Query 030984
Match_columns 168
No_of_seqs 26 out of 28
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 11:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_N PSAN, PSI-N, photosyste 100.0 3.5E-93 1.2E-97 571.1 -2.0 164 1-168 1-170 (170)
2 3lw5_N Photosystem I-N subunit 100.0 7.8E-61 2.7E-65 351.5 -2.0 82 87-168 1-85 (85)
3 3ux2_A MIP18 family protein FA 46.5 5.2 0.00018 30.3 0.5 12 97-108 104-115 (130)
4 3u7d_B Protein HEG homolog 1; 39.7 9.5 0.00032 22.7 0.8 18 121-148 3-20 (26)
5 1gr0_A Inositol-3-phosphate sy 18.0 37 0.0013 29.6 0.9 24 126-149 173-199 (367)
6 2xzh_A Clathrin heavy chain 1; 13.4 38 0.0013 29.7 -0.2 6 163-168 109-114 (365)
7 2vd3_A ATP phosphoribosyltrans 13.4 22 0.00077 29.7 -1.6 24 98-121 111-134 (289)
8 4dxr_B Nesprin-1; beta-sandwic 12.8 45 0.0015 21.0 0.1 11 107-117 13-23 (35)
9 1z7m_E ATP phosphoribosyltrans 11.9 24 0.00082 28.1 -1.7 20 101-120 109-128 (208)
10 1bpo_A Protein (clathrin); cla 11.6 49 0.0017 30.1 -0.0 6 163-168 108-113 (494)
No 1
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=100.00 E-value=3.5e-93 Score=571.13 Aligned_cols=164 Identities=73% Similarity=1.201 Sum_probs=81.9
Q ss_pred CccccccceecceeeccCCCCcccccceeeccC---CccccCCccceeeeeccccccccCcchhHHHHHHHHHHHHHHhh
Q 030984 1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT 77 (168)
Q Consensus 1 maamnssvlac~yaisg~~g~sel~~k~~s~~s---p~~~~~klPvira~~~~~~~~~~~~~grraAl~~laa~l~~ta~ 77 (168)
||+||||||+||||||| ++|||+|++|||| |.++|+|||+||+||+.+. +....+|||+|+++|||+|+++++
T Consensus 1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~~-~~~~~~~rRaAl~~LaA~l~~~aa 76 (170)
T 2wsc_N 1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVT-ESKSDQGRRSALVYLAATLFTAAA 76 (170)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeecc-cccccchhHHHHHHHHHHHHHHhh
Confidence 99999999999999999 7999999999999 8899999999999997744 445568999999999999999997
Q ss_pred hhccccccccchHHHHHHh---hhhhhhhhhhccccccceeeeeeeccccCCCCccchhhhhhcCCCcccccCcceeecc
Q 030984 78 AAASSSANAGVIDEYLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKG 154 (168)
Q Consensus 78 ~a~a~sAnAgv~~d~l~kS---KeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECeG 154 (168)
++++++||||||||||||| ||||||||||||+|||+|+||||||+||||||||||||||+||+||||||||+|||||
T Consensus 77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECEG 156 (170)
T 2wsc_N 77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEG 156 (170)
T ss_dssp ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTTCTTSSCCSCCCSCTT
T ss_pred cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcCCCceecccceeeecc
Confidence 7899999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcceecC
Q 030984 155 KDKYKCGSNVFWKW 168 (168)
Q Consensus 155 kdk~kCgSnvfwkw 168 (168)
||+|||||||||||
T Consensus 157 kd~~kCgSnvfwkw 170 (170)
T 2wsc_N 157 KDKYKCGSNVFWKW 170 (170)
T ss_dssp CCCCCSSCSCCCCC
T ss_pred ccCccccccceecC
Confidence 99999999999999
No 2
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=100.00 E-value=7.8e-61 Score=351.50 Aligned_cols=82 Identities=89% Similarity=1.559 Sum_probs=81.4
Q ss_pred cchHHHHHHh---hhhhhhhhhhccccccceeeeeeeccccCCCCccchhhhhhcCCCcccccCcceeecccccccccCc
Q 030984 87 GVIDEYLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSN 163 (168)
Q Consensus 87 gv~~d~l~kS---KeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECeGkdk~kCgSn 163 (168)
|||||||+|| ||||||||||||+|||||+|||+||+|+||+|||||||+|++++||||||||+|||||||+||||||
T Consensus 1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~~V~FlsdD~~lECeGkd~~kcgsn 80 (85)
T 3lw5_N 1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSN 80 (85)
T ss_dssp CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTTBTTBSCCSCCCSCCSCCCCCSSTT
T ss_pred CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcCCCceecccceeeecCccccccccc
Confidence 7999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecC
Q 030984 164 VFWKW 168 (168)
Q Consensus 164 vfwkw 168 (168)
|||||
T Consensus 81 vfwkw 85 (85)
T 3lw5_N 81 VFWKW 85 (85)
T ss_dssp TCCCC
T ss_pred ceecC
Confidence 99999
No 3
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=46.53 E-value=5.2 Score=30.32 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=10.8
Q ss_pred hhhhhhhhhhcc
Q 030984 97 KELNDQKRLATS 108 (168)
Q Consensus 97 KeLNDKKRlATS 108 (168)
|.||||.|.|..
T Consensus 104 KQl~DKERvaAA 115 (130)
T 3ux2_A 104 KQINDKERVAAA 115 (130)
T ss_dssp HHHHCHHHHHHH
T ss_pred HhhhhHHHHHHH
Confidence 999999999865
No 4
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=39.68 E-value=9.5 Score=22.74 Aligned_cols=18 Identities=44% Similarity=0.774 Sum_probs=14.0
Q ss_pred ccccCCCCccchhhhhhcCCCcccccCc
Q 030984 121 GTCKFPENFTGCQDLAKQKKVPFISDDL 148 (168)
Q Consensus 121 GtCkFP~Nf~GCqdlAk~k~V~FlsdDl 148 (168)
-+|-||. |.+-.|||||-
T Consensus 3 hsciypg----------qynpsfisdds 20 (26)
T 3u7d_B 3 HSCIFPG----------QYNPSFISDES 20 (26)
T ss_pred ccccccC----------ccCcccccCcc
Confidence 3688887 55778999985
No 5
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
Probab=18.00 E-value=37 Score=29.65 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCCcc---chhhhhhcCCCcccccCcc
Q 030984 126 PENFT---GCQDLAKQKKVPFISDDLE 149 (168)
Q Consensus 126 P~Nf~---GCqdlAk~k~V~FlsdDl~ 149 (168)
|.+.+ +.+++++++++|.+-||++
T Consensus 173 P~~~~~~P~~~el~~~~g~pi~GdD~K 199 (367)
T 1gr0_A 173 PVFIASDPVWAKKFTDARVPIVGDDIK 199 (367)
T ss_dssp SCCSTTSHHHHHHHHHHTCEEEESSBC
T ss_pred CccccCCHHHHHHHHHcCCCEeccccc
Confidence 66666 8999999999999999987
No 6
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=13.43 E-value=38 Score=29.70 Aligned_cols=6 Identities=67% Similarity=2.018 Sum_probs=4.0
Q ss_pred cceecC
Q 030984 163 NVFWKW 168 (168)
Q Consensus 163 nvfwkw 168 (168)
=+||||
T Consensus 109 VvfWkW 114 (365)
T 2xzh_A 109 VTFWKW 114 (365)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 367777
No 7
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=13.38 E-value=22 Score=29.69 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.2
Q ss_pred hhhhhhhhhccccccceeeeeeec
Q 030984 98 ELNDQKRLATSGANFARAYTVQFG 121 (168)
Q Consensus 98 eLNDKKRlATS~ANfaRa~TV~~G 121 (168)
.|.+.+|.||++-|++|.|--+-|
T Consensus 111 ~l~~~~RIATkyp~l~~~yf~~~g 134 (289)
T 2vd3_A 111 DIPRGAVIATEFPGITENYLREHG 134 (289)
T ss_dssp GCCTTCEEEESCHHHHHHHHHHTT
T ss_pred HhcCCCEEEeCcHHHHHHHHHHcC
Confidence 343568999999999999864433
No 8
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=12.84 E-value=45 Score=20.98 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.0
Q ss_pred ccccccceeee
Q 030984 107 TSGANFARAYT 117 (168)
Q Consensus 107 TS~ANfaRa~T 117 (168)
+-.-|||||..
T Consensus 13 ~~aNNFARSF~ 23 (35)
T 4dxr_B 13 ALSNNFARSFH 23 (35)
T ss_dssp TTCCTGGGSSS
T ss_pred HhhhhHHHHhH
Confidence 44569999975
No 9
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=11.87 E-value=24 Score=28.08 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.4
Q ss_pred hhhhhhccccccceeeeeee
Q 030984 101 DQKRLATSGANFARAYTVQF 120 (168)
Q Consensus 101 DKKRlATS~ANfaRa~TV~~ 120 (168)
..+|.||++-|++|.|--+-
T Consensus 109 ~~~RIATkyp~l~~~yf~~~ 128 (208)
T 1z7m_E 109 RHKRIASKYPRVTKKYFAQK 128 (208)
T ss_dssp SCEEEEESCHHHHHHHHHHT
T ss_pred CCCEEEECchHHHHHHHHHc
Confidence 36899999999999886443
No 10
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=11.63 E-value=49 Score=30.12 Aligned_cols=6 Identities=67% Similarity=2.018 Sum_probs=4.2
Q ss_pred cceecC
Q 030984 163 NVFWKW 168 (168)
Q Consensus 163 nvfwkw 168 (168)
=|||||
T Consensus 108 VvfWkW 113 (494)
T 1bpo_A 108 VTFWKW 113 (494)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 367777
Done!