BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030985
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1Z|A Chain A, Crystal Structure Of Human Haloacid Dehalogenase-like
Hydrolase Domain Containing 3 (hdhd3)
Length = 263
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 56 DAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA 98
D TLL+L P+ E YA+ AR +GL V+ + +++GFR+A+ A
Sbjct: 7 DVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRA 49
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 58 GGTLLQLAEPVEETY------ASIARKYGLNVDSADIKKGFRKA-FAAPWPEKLRYEGDG 110
GGTL++ A VEE Y A GL + ++ G + A F AP+ G+G
Sbjct: 72 GGTLIESAILVEECYSVEPSAALTIFATGLGLTPINLAAGPQHAEFLAPF-----LSGEG 126
Query: 111 RPFWRLVVSEATGCTN 126
P LV SE G N
Sbjct: 127 SPLASLVFSEPGGVAN 142
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGF 92
+DAVL D G L++ + + + S+ + GL++D +I F
Sbjct: 28 FDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYF 70
>pdb|3UPS|A Chain A, Crystal Structure Of Iojap-Like Protein From Zymomonas
Mobilis
Length = 136
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDS 85
A D VLLDAG ++ L P ++ ++ R +G +S
Sbjct: 90 AADWVLLDAGDIIIHLFRPEVRSFYNLERXWGFGDES 126
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 26.9 bits (58), Expect = 5.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 33 CSSMPLHSGVGKS--VKKAYDAVLLDAGGTLLQLAEPVEETYASI 75
CS++ L+ G + K D D G T L +++PVE +A+I
Sbjct: 43 CSNLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATI 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,363,790
Number of Sequences: 62578
Number of extensions: 152858
Number of successful extensions: 427
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 9
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)