BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030985
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BSH5|HDHD3_HUMAN Haloacid dehalogenase-like hydrolase domain-containing protein 3
OS=Homo sapiens GN=HDHD3 PE=1 SV=1
Length = 251
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 56 DAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA 98
D TLL+L P+ E YA+ AR +GL V+ + +++GFR+A+ A
Sbjct: 13 DVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRA 55
>sp|O14262|YFP5_SCHPO Putative uncharacterized hydrolase C7D4.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC7D4.05 PE=3 SV=3
Length = 228
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 53 VLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRP 112
V DA GT+L L++PV Y+ +A+KYG++ +I+ KAF + EK + G
Sbjct: 13 VTFDAFGTILHLSKPVPIVYSEVAQKYGVHATIDEIEHNSNKAFKD-FSEKHKNHG---- 67
Query: 113 FWRLVVSEATGCTNDDYFEEVYEVSF 138
+ +G D++ +V E SF
Sbjct: 68 -------KKSGLNPHDWWIKVIEHSF 86
>sp|Q9CYW4|HDHD3_MOUSE Haloacid dehalogenase-like hydrolase domain-containing protein 3
OS=Mus musculus GN=Hdhd3 PE=2 SV=1
Length = 251
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 56 DAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA 98
D TL++L PV E YAS AR +G+ V+ +++ FR+A+ A
Sbjct: 13 DVKDTLIKLRRPVGEEYASKARAHGVVVEDITVEQAFRQAYRA 55
>sp|Q5E9D6|HDHD3_BOVIN Haloacid dehalogenase-like hydrolase domain-containing protein 3
OS=Bos taurus GN=HDHD3 PE=2 SV=1
Length = 251
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 56 DAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA 98
D TLL+L PV YA+ AR +GL V++ + + F++A+ A
Sbjct: 13 DVKDTLLRLRHPVGVEYATKARAHGLEVEATALGQAFKQAYKA 55
>sp|Q3ICZ5|ISPG_PSEHT 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=ispG PE=3 SV=1
Length = 372
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 22 PLRFNISNRLRCSSMPLHSGVGKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGL 81
P++ S R+ ++P+ G +V+ + +D G T+ Q+ + +++ A I R
Sbjct: 6 PIKRRKSTRINVGNVPIGDGAPIAVQSMTNTDTMDVGATVAQI-QAIQDAGADIVRVSVP 64
Query: 82 NVDSADIKKGFRKAFAAPWPEKLRYE 107
+D+A+ K ++ P + ++
Sbjct: 65 TMDAAEAFKSIKEQVTIPLVADIHFD 90
>sp|Q08CY5|HDHD3_XENTR Haloacid dehalogenase-like hydrolase domain-containing protein 3
OS=Xenopus tropicalis GN=hdhd3 PE=2 SV=1
Length = 189
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 53 VLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAP---WPEKLRYEG- 108
+ D TLL++ PV + Y + A++ GL +D ++ FR A+ +P +G
Sbjct: 6 ITWDIKDTLLRVRVPVGQQYFAEAKRQGLCMDPGSLETSFRNAYRTHSRLFPNYGLAQGM 65
Query: 109 DGRPFWRLVVSEA---TGCTNDDYFEEVYEVSF--YETYVLTFLIPKLSLQVKECSGL-- 161
D R +W VV + +G +D+ V + + + T ++P + C GL
Sbjct: 66 DSRQWWLDVVLQTFRLSGAEDDETVRSVAQQLYQDFSTARNWAVVPGAREALDSCKGLGL 125
Query: 162 -LETGSNF 168
+ SNF
Sbjct: 126 KMAVISNF 133
>sp|Q7T012|HDHD3_DANRE Haloacid dehalogenase-like hydrolase domain-containing protein 3
OS=Danio rerio GN=hdhd3 PE=2 SV=1
Length = 242
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 53 VLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAF---AAPWPEKLRYEG- 108
VL D TLL++ V E Y A++ GL + A ++ FR A+ + P R +G
Sbjct: 8 VLWDVKDTLLKVRRSVGEQYCREAQQAGLQLSPAQVETAFRLAYKQKSQLLPNYGRAQGM 67
Query: 109 DGRPFWRLVVSEATG 123
D + +W +V + G
Sbjct: 68 DSQVWWTGLVRDTFG 82
>sp|Q04223|YM14_YEAST Uncharacterized protein YMR130W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR130W PE=1 SV=1
Length = 302
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 53 VLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAA---PWPEKLRYEGD 109
+ DA TL PV E Y + RKYG+ + + + F F +P+ +Y G
Sbjct: 24 ITFDAYNTLYATKLPVMEQYCIVGRKYGIKANPSTLTNNFPHVFKKLKEDYPQYGKYSGI 83
Query: 110 GRPFWRLVVSEATGCTNDDYFEEVYEVSF-YETYVLTFLIPKL 151
W ++ N+ E + E+ +E + F+ P L
Sbjct: 84 KPEQWWSILIRNVFAPNEIPDEMINEILMRFEGFDSYFVYPDL 126
>sp|B3DVH7|RS16_METI4 30S ribosomal protein S16 OS=Methylacidiphilum infernorum (isolate
V4) GN=rpsP PE=3 SV=1
Length = 86
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 103 KLRYEGD-GRPFWRLVVSEATGCTNDDYFEEVYEVSFYETYVLTFLIPKLSLQ 154
+LR EG GRP +R+VV++ TN Y E EV FY+ V +L LQ
Sbjct: 6 RLRREGKKGRPQYRIVVADKRCPTNGKYIE---EVGFYDPMVEAPQGYRLKLQ 55
>sp|P36836|S15A1_RABIT Solute carrier family 15 member 1 OS=Oryctolagus cuniculus
GN=SLC15A1 PE=2 SV=1
Length = 707
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 80 GLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEV 133
G V SA I + R+ F +P+ E G + L+ S+ATGC FE++
Sbjct: 526 GFTVSSAGISEQCRRDFESPYLEF------GSAYTYLITSQATGCPQVTEFEDI 573
>sp|Q5HZL9|HDHD3_XENLA Haloacid dehalogenase-like hydrolase domain-containing protein 3
OS=Xenopus laevis GN=hdhd3 PE=2 SV=1
Length = 244
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 53 VLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAF 96
+ D TLL++ PV + Y + A+K GL V+ ++ FR A+
Sbjct: 6 ITWDVKDTLLRVRVPVGQQYYAEAKKRGLCVNPGTLETSFRNAY 49
>sp|Q38ZE1|GUAA_LACSS GMP synthase [glutamine-hydrolyzing] OS=Lactobacillus sakei subsp.
sakei (strain 23K) GN=guaA PE=3 SV=1
Length = 517
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 38 LHSGVGKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFA 97
LH +G + ++ +D G LL+ E VE+ S+ K+GLN+ D K+ F A
Sbjct: 242 LHRAIGDQLV----SIFVDHG--LLRKGE-VEQVMESLGGKFGLNIIQVDAKERFMSKLA 294
Query: 98 A-PWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEE 132
PEK R + G F ++ EAT D+ +
Sbjct: 295 GVSDPEKKR-KIIGNEFIQVFDEEATKLNGIDFLAQ 329
>sp|A2Q9M4|MTNB_ASPNC Methylthioribulose-1-phosphate dehydratase OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=mde1 PE=3 SV=1
Length = 242
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 25 FNISNRLRCSSMPLHSGVGKSVKKAYDAVLL----------DAGGTLLQLAEPVEETYAS 74
F ISN + +P G GK + YD + + D G+L + E +TYA
Sbjct: 140 FEISNIEQIKGIP--RGKGKGMMGFYDTLRIPIIDNTAFEEDLTGSLEKAMEEYPDTYAV 197
Query: 75 IARKYGLNVDSADIKKG 91
+ R++G+ V D+ K
Sbjct: 198 LVRRHGIYVWGDDVVKA 214
>sp|B1VFW6|KHSE_CORU7 Homoserine kinase OS=Corynebacterium urealyticum (strain ATCC 43042
/ DSM 7109) GN=thrB PE=3 SV=1
Length = 306
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 14 LLKALKMKP------LRFNISNRLRCSSMPLHSG-VGKSVKKAYDAVLLDAGGTLLQLA- 65
LL AL P R + R +P+ S V + + Y A L AG T+L L+
Sbjct: 215 LLVALSKDPSLLWEGTRDRMHQPFRAEVLPISSEWVNRLRNQGYPAFLSGAGPTVLVLST 274
Query: 66 EPVEETYASIARKYGLNVD 84
EPVEE AR G+ V+
Sbjct: 275 EPVEEALLQEARDRGIRVE 293
>sp|B2RJM1|HCP_PORG3 Hydroxylamine reductase OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=hcp PE=3 SV=1
Length = 550
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 2 EACISKCCHGNSLLKALKMKPLRFNISNRLRCSSMPLHSGVGKSVKKAYDAVLLDAGGTL 61
+ CI K G A M L FN+ + H+GV +KA A++ T+
Sbjct: 17 KGCILKGVCGKDFSTANLMDLLVFNLKGIAIIMTSMRHAGVKADYRKADKAIMESLFATI 76
Query: 62 LQ-------LAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFW 114
+A+ VE+T+A A Y L + P E + +G +
Sbjct: 77 TNANFDYSSIAKRVEKTFALKAELYSL---------ALTQGIELPENEAVTMQGKPEEYD 127
Query: 115 RLVVSEATGCTNDDYFEEVYEVSFY 139
RL +S D+ + E++ Y
Sbjct: 128 RLALSVGILRETDEDVRSLKELTIY 152
>sp|Q6NHU3|KHSE_CORDI Homoserine kinase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=thrB PE=3 SV=1
Length = 308
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 5 ISKCCHGNSLLKALKMKP------LRFNISNRLRCSSMPLHSG-VGKSVKKAYDAVLLDA 57
+S+C + AL+ P R + R +P+ + V + + Y A L A
Sbjct: 210 VSRCA---VMTVALQHHPELLWEGTRDRLHQPYRADVLPVTAEWVNRLRNRGYAAYLSGA 266
Query: 58 GGTLLQL-AEPVEETYASIARKYGLNVDSADI 88
G T++ L EPV+E + AR+ GL V S D+
Sbjct: 267 GPTIMVLHTEPVDEAVLNDAREAGLRVLSLDV 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,124,752
Number of Sequences: 539616
Number of extensions: 2443189
Number of successful extensions: 5599
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5590
Number of HSP's gapped (non-prelim): 24
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)