Query 030985
Match_columns 168
No_of_seqs 120 out of 313
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 07:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3085 Predicted hydrolase (H 99.8 8E-19 1.7E-23 147.8 10.1 121 47-168 4-138 (237)
2 TIGR02252 DREG-2 REG-2-like, H 99.2 8.1E-11 1.8E-15 93.4 10.9 105 51-155 1-118 (203)
3 TIGR02253 CTE7 HAD superfamily 97.9 4.2E-05 9.1E-10 61.1 8.0 51 50-100 2-55 (221)
4 TIGR03351 PhnX-like phosphonat 97.8 0.00023 5.1E-09 57.0 9.7 42 50-91 1-42 (220)
5 PRK10826 2-deoxyglucose-6-phos 97.6 0.00012 2.7E-09 59.0 5.3 94 49-155 6-105 (222)
6 PRK10725 fructose-1-P/6-phosph 97.6 0.00059 1.3E-08 53.2 8.9 41 48-88 3-43 (188)
7 COG1011 Predicted hydrolase (H 97.5 0.00048 1E-08 54.9 7.2 114 48-165 2-123 (229)
8 TIGR02254 YjjG/YfnB HAD superf 97.4 0.00089 1.9E-08 53.2 8.3 38 50-87 1-38 (224)
9 TIGR02009 PGMB-YQAB-SF beta-ph 97.4 0.0013 2.8E-08 50.9 8.6 93 50-156 1-102 (185)
10 TIGR01428 HAD_type_II 2-haloal 97.3 0.00034 7.3E-09 55.3 4.8 100 50-155 1-105 (198)
11 PRK10563 6-phosphogluconate ph 97.3 0.00037 8.1E-09 56.0 5.1 42 49-90 3-44 (221)
12 PRK09449 dUMP phosphatase; Pro 97.3 0.0012 2.6E-08 53.0 7.9 101 49-155 2-108 (224)
13 PRK10748 flavin mononucleotide 97.2 0.0013 2.8E-08 54.2 7.4 105 47-155 7-126 (238)
14 PF13419 HAD_2: Haloacid dehal 97.2 0.00012 2.7E-09 54.6 1.1 92 53-161 1-95 (176)
15 TIGR01493 HAD-SF-IA-v2 Haloaci 97.2 0.00063 1.4E-08 52.5 4.9 96 52-153 1-101 (175)
16 PLN02940 riboflavin kinase 97.2 0.0017 3.7E-08 57.8 8.0 94 46-154 7-105 (382)
17 PRK13222 phosphoglycolate phos 97.1 0.0016 3.4E-08 52.0 6.3 42 48-89 4-46 (226)
18 COG0637 Predicted phosphatase/ 97.1 0.005 1.1E-07 50.6 9.3 43 49-91 1-43 (221)
19 PLN02919 haloacid dehalogenase 97.0 0.0045 9.7E-08 62.0 9.9 95 46-155 71-174 (1057)
20 PLN03243 haloacid dehalogenase 96.9 0.0034 7.4E-08 53.1 7.3 94 48-156 22-123 (260)
21 PLN02770 haloacid dehalogenase 96.9 0.0033 7.1E-08 52.2 6.6 35 47-81 19-53 (248)
22 TIGR02247 HAD-1A3-hyp Epoxide 96.8 0.0011 2.5E-08 52.8 3.5 98 50-155 2-107 (211)
23 PRK13226 phosphoglycolate phos 96.8 0.01 2.2E-07 48.5 8.6 46 48-93 10-56 (229)
24 TIGR01422 phosphonatase phosph 96.7 0.0027 5.9E-08 52.3 5.0 42 50-91 2-44 (253)
25 COG0546 Gph Predicted phosphat 96.6 0.0035 7.6E-08 51.1 5.1 44 48-91 2-46 (220)
26 PRK13478 phosphonoacetaldehyde 96.6 0.0038 8.3E-08 52.1 5.0 42 48-89 2-44 (267)
27 PRK13223 phosphoglycolate phos 96.4 0.012 2.5E-07 49.9 7.0 35 50-84 13-47 (272)
28 PRK13288 pyrophosphatase PpaX; 96.3 0.0064 1.4E-07 48.7 4.4 44 49-92 2-46 (214)
29 PLN02575 haloacid dehalogenase 96.0 0.025 5.3E-07 51.1 7.5 94 49-155 130-229 (381)
30 TIGR01449 PGP_bact 2-phosphogl 96.0 0.016 3.5E-07 45.8 5.6 38 53-90 1-39 (213)
31 PRK11587 putative phosphatase; 95.9 0.0074 1.6E-07 48.7 3.2 34 49-82 2-35 (218)
32 TIGR01548 HAD-SF-IA-hyp1 haloa 95.8 0.013 2.9E-07 46.4 4.4 41 52-92 2-43 (197)
33 TIGR01990 bPGM beta-phosphoglu 95.8 0.012 2.5E-07 45.5 3.7 35 52-86 1-35 (185)
34 PHA02597 30.2 hypothetical pro 95.7 0.029 6.2E-07 44.3 5.7 36 50-91 2-37 (197)
35 PRK13225 phosphoglycolate phos 95.5 0.015 3.3E-07 49.5 3.7 41 48-88 60-101 (273)
36 PLN02779 haloacid dehalogenase 95.4 0.022 4.7E-07 48.7 4.5 34 48-81 38-72 (286)
37 PRK06698 bifunctional 5'-methy 95.1 0.058 1.3E-06 48.8 6.4 40 37-80 232-271 (459)
38 PRK14988 GMP/IMP nucleotidase; 94.9 0.15 3.3E-06 41.7 7.9 47 48-97 8-59 (224)
39 TIGR00338 serB phosphoserine p 94.8 0.036 7.7E-07 44.3 3.8 34 47-85 11-44 (219)
40 PRK09456 ?-D-glucose-1-phospha 94.6 0.23 5E-06 39.4 8.1 91 51-155 1-97 (199)
41 PLN02954 phosphoserine phospha 94.6 0.05 1.1E-06 43.6 4.1 31 48-83 10-40 (224)
42 TIGR01549 HAD-SF-IA-v1 haloaci 94.4 0.039 8.5E-07 41.5 3.1 36 52-89 1-36 (154)
43 PRK11133 serB phosphoserine ph 93.7 0.099 2.2E-06 45.9 4.5 42 44-90 104-145 (322)
44 PRK03669 mannosyl-3-phosphogly 93.1 0.098 2.1E-06 43.7 3.4 37 47-83 4-43 (271)
45 TIGR01993 Pyr-5-nucltdase pyri 93.0 0.22 4.7E-06 38.8 5.0 31 52-82 2-37 (184)
46 PRK13582 thrH phosphoserine ph 92.3 0.14 3E-06 40.4 3.1 27 50-82 1-27 (205)
47 PRK01158 phosphoglycolate phos 92.2 0.12 2.7E-06 41.4 2.8 35 49-83 2-39 (230)
48 TIGR01454 AHBA_synth_RP 3-amin 92.0 0.15 3.2E-06 40.5 2.9 38 53-90 1-40 (205)
49 PRK11590 hypothetical protein; 90.9 0.31 6.8E-06 39.4 3.9 33 49-83 5-38 (211)
50 TIGR01491 HAD-SF-IB-PSPlk HAD- 90.1 0.39 8.4E-06 37.3 3.6 29 50-82 4-32 (201)
51 PF00702 Hydrolase: haloacid d 89.8 0.17 3.6E-06 39.4 1.4 30 50-79 1-34 (215)
52 COG0561 Cof Predicted hydrolas 89.0 0.33 7.2E-06 40.0 2.6 34 49-82 2-38 (264)
53 PTZ00174 phosphomannomutase; P 88.9 0.34 7.4E-06 40.1 2.7 46 48-93 3-57 (247)
54 PRK10530 pyridoxal phosphate ( 88.8 0.35 7.6E-06 39.6 2.7 35 49-83 2-39 (272)
55 PRK10513 sugar phosphate phosp 88.5 0.36 7.8E-06 39.8 2.5 35 49-83 2-39 (270)
56 PRK15126 thiamin pyrimidine py 87.2 0.49 1.1E-05 39.3 2.6 34 50-83 2-38 (272)
57 PRK10976 putative hydrolase; P 86.9 0.53 1.1E-05 38.8 2.6 34 50-83 2-38 (266)
58 TIGR01487 SPP-like sucrose-pho 86.2 0.63 1.4E-05 37.2 2.7 34 50-83 1-37 (215)
59 PRK00192 mannosyl-3-phosphogly 86.1 0.75 1.6E-05 38.5 3.2 34 49-82 3-39 (273)
60 PLN02887 hydrolase family prot 85.9 0.67 1.4E-05 44.1 3.0 38 46-83 304-344 (580)
61 TIGR01684 viral_ppase viral ph 85.4 0.85 1.8E-05 40.2 3.2 37 46-82 122-164 (301)
62 TIGR01672 AphA HAD superfamily 83.6 1.5 3.2E-05 37.1 3.8 42 50-100 63-109 (237)
63 PHA03398 viral phosphatase sup 83.0 1.2 2.6E-05 39.4 3.1 37 46-82 124-166 (303)
64 PLN02423 phosphomannomutase 82.1 1.2 2.6E-05 37.1 2.8 23 48-70 4-27 (245)
65 TIGR01482 SPP-subfamily Sucros 82.1 0.82 1.8E-05 36.4 1.6 31 53-83 1-34 (225)
66 PRK12702 mannosyl-3-phosphogly 82.0 1.4 3.1E-05 38.8 3.3 34 50-83 1-37 (302)
67 TIGR01457 HAD-SF-IIA-hyp2 HAD- 81.6 1.7 3.8E-05 36.1 3.5 33 50-82 1-35 (249)
68 PF13344 Hydrolase_6: Haloacid 81.4 0.85 1.8E-05 33.2 1.4 30 53-82 1-32 (101)
69 TIGR02463 MPGP_rel mannosyl-3- 81.3 1.5 3.3E-05 35.0 3.0 31 52-82 1-34 (221)
70 KOG3109 Haloacid dehalogenase- 81.0 6 0.00013 33.9 6.5 41 44-84 9-54 (244)
71 TIGR01509 HAD-SF-IA-v3 haloaci 80.3 12 0.00027 28.2 7.6 19 52-70 1-19 (183)
72 TIGR01452 PGP_euk phosphoglyco 80.3 1.1 2.5E-05 37.7 2.0 33 49-82 1-36 (279)
73 TIGR01458 HAD-SF-IIA-hyp3 HAD- 79.5 2.2 4.7E-05 35.8 3.4 15 50-64 1-15 (257)
74 TIGR01670 YrbI-phosphatas 3-de 79.2 1 2.2E-05 34.9 1.2 14 50-63 1-14 (154)
75 PLN02645 phosphoglycolate phos 78.6 1.1 2.4E-05 38.6 1.4 24 46-69 24-47 (311)
76 TIGR02137 HSK-PSP phosphoserin 77.6 2.1 4.6E-05 34.8 2.8 25 51-81 2-26 (203)
77 TIGR01486 HAD-SF-IIB-MPGP mann 77.2 2.1 4.6E-05 35.2 2.7 32 52-83 1-35 (256)
78 KOG2914 Predicted haloacid-hal 77.0 4.7 0.0001 33.9 4.7 35 48-82 8-42 (222)
79 TIGR01489 DKMTPPase-SF 2,3-dik 76.7 4.2 9.1E-05 31.0 4.1 15 52-66 3-17 (188)
80 PRK14502 bifunctional mannosyl 76.5 3.3 7.2E-05 40.4 4.1 36 48-83 414-452 (694)
81 COG0560 SerB Phosphoserine pho 76.3 3.5 7.7E-05 33.9 3.7 30 48-82 3-32 (212)
82 TIGR01662 HAD-SF-IIIA HAD-supe 75.4 3.6 7.8E-05 30.2 3.2 13 51-63 1-13 (132)
83 TIGR02461 osmo_MPG_phos mannos 75.0 2.6 5.7E-05 34.6 2.7 31 52-82 1-33 (225)
84 PRK10444 UMP phosphatase; Prov 74.5 2.3 5E-05 35.7 2.2 20 50-69 1-20 (248)
85 PF08282 Hydrolase_3: haloacid 74.2 2.2 4.9E-05 33.4 2.0 41 53-93 1-50 (254)
86 COG3769 Predicted hydrolase (H 74.1 3.1 6.8E-05 35.9 2.9 36 47-83 4-42 (274)
87 KOG3309 Ferredoxin [Energy pro 73.8 5.4 0.00012 32.2 4.0 42 44-85 38-79 (159)
88 smart00775 LNS2 LNS2 domain. T 73.6 3.3 7.2E-05 32.4 2.8 30 52-82 1-45 (157)
89 PF08645 PNK3P: Polynucleotide 73.0 2.2 4.8E-05 33.6 1.6 16 51-66 1-16 (159)
90 TIGR01689 EcbF-BcbF capsule bi 71.8 4.4 9.6E-05 31.1 3.0 15 50-64 1-15 (126)
91 PRK10187 trehalose-6-phosphate 71.6 4.5 9.7E-05 34.2 3.3 48 45-92 9-71 (266)
92 PRK09484 3-deoxy-D-manno-octul 71.5 2.1 4.6E-05 34.0 1.3 16 49-64 20-35 (183)
93 TIGR00099 Cof-subfamily Cof su 70.5 3.3 7.2E-05 33.9 2.3 31 52-82 1-34 (256)
94 PRK09552 mtnX 2-hydroxy-3-keto 66.6 4.3 9.4E-05 32.7 2.1 25 51-80 4-28 (219)
95 TIGR01484 HAD-SF-IIB HAD-super 63.5 5 0.00011 31.5 1.9 43 52-94 1-53 (204)
96 TIGR01490 HAD-SF-IB-hyp1 HAD-s 62.8 7.8 0.00017 30.2 2.9 14 52-65 1-14 (202)
97 cd01427 HAD_like Haloacid deha 61.5 8.3 0.00018 26.7 2.6 30 52-82 1-42 (139)
98 PF02257 RFX_DNA_binding: RFX 59.1 9.6 0.00021 27.6 2.5 37 64-100 25-62 (85)
99 TIGR01488 HAD-SF-IB Haloacid D 58.3 4.6 0.0001 30.6 0.8 15 52-66 1-15 (177)
100 PF11019 DUF2608: Protein of u 58.1 4.8 0.0001 34.1 1.0 20 51-70 21-40 (252)
101 TIGR00213 GmhB_yaeD D,D-heptos 57.9 13 0.00029 28.9 3.4 13 51-63 2-14 (176)
102 TIGR01459 HAD-SF-IIA-hyp4 HAD- 57.4 7.7 0.00017 31.8 2.1 36 46-82 4-42 (242)
103 PF06437 ISN1: IMP-specific 5' 57.0 5.8 0.00013 36.4 1.3 33 49-82 146-184 (408)
104 PRK06769 hypothetical protein; 56.8 14 0.00031 28.9 3.4 15 49-63 3-17 (173)
105 COG0647 NagD Predicted sugar p 56.3 18 0.00039 31.3 4.2 37 46-82 4-42 (269)
106 KOG3189 Phosphomannomutase [Li 56.2 9.6 0.00021 32.5 2.4 28 51-78 12-39 (252)
107 PRK14501 putative bifunctional 56.1 13 0.00027 36.0 3.5 47 47-93 489-550 (726)
108 COG2069 CdhD CO dehydrogenase/ 55.8 12 0.00026 33.7 3.0 36 47-82 119-166 (403)
109 PLN02205 alpha,alpha-trehalose 55.0 14 0.0003 36.8 3.7 48 48-95 594-654 (854)
110 TIGR01681 HAD-SF-IIIC HAD-supe 53.3 8.4 0.00018 28.8 1.5 14 51-64 1-14 (128)
111 PF12710 HAD: haloacid dehalog 51.3 8.8 0.00019 29.3 1.4 13 53-65 1-13 (192)
112 PRK08942 D,D-heptose 1,7-bisph 50.4 9.7 0.00021 29.7 1.5 15 50-64 3-17 (181)
113 TIGR01545 YfhB_g-proteo haloac 50.2 9.1 0.0002 31.2 1.4 17 49-65 4-20 (210)
114 PRK14300 chaperone protein Dna 49.9 36 0.00079 30.3 5.3 60 78-139 8-69 (372)
115 TIGR02349 DnaJ_bact chaperone 49.8 32 0.0007 30.2 4.9 59 79-139 6-66 (354)
116 TIGR01656 Histidinol-ppas hist 49.8 9.7 0.00021 28.8 1.4 16 51-66 1-16 (147)
117 PF05152 DUF705: Protein of un 49.7 21 0.00045 31.6 3.6 50 46-95 118-179 (297)
118 TIGR01664 DNA-3'-Pase DNA 3'-p 49.2 11 0.00025 29.5 1.7 18 48-65 11-28 (166)
119 COG1778 Low specificity phosph 48.9 9.1 0.0002 31.2 1.2 18 46-63 4-21 (170)
120 TIGR02471 sucr_syn_bact_C sucr 47.5 18 0.00038 29.3 2.7 42 52-94 1-50 (236)
121 TIGR02726 phenyl_P_delta pheny 47.3 11 0.00024 30.1 1.4 18 47-64 4-21 (169)
122 PRK14280 chaperone protein Dna 45.4 41 0.0009 30.0 4.9 59 79-139 10-70 (376)
123 PRK14293 chaperone protein Dna 45.1 34 0.00073 30.5 4.3 59 79-139 9-69 (374)
124 PRK14281 chaperone protein Dna 44.6 39 0.00085 30.4 4.7 60 79-139 9-70 (397)
125 PF12689 Acid_PPase: Acid Phos 44.6 13 0.00029 29.9 1.5 17 49-65 2-18 (169)
126 PRK10767 chaperone protein Dna 42.9 47 0.001 29.5 4.8 60 79-139 10-71 (371)
127 PF03031 NIF: NLI interacting 42.8 15 0.00032 27.8 1.5 16 51-66 1-16 (159)
128 TIGR01685 MDP-1 magnesium-depe 42.4 16 0.00034 29.4 1.6 14 50-63 2-15 (174)
129 PRK14277 chaperone protein Dna 42.3 48 0.001 29.7 4.8 61 78-139 10-72 (386)
130 PRK14289 chaperone protein Dna 42.1 53 0.0011 29.4 5.1 60 79-139 11-72 (386)
131 TIGR01663 PNK-3'Pase polynucle 41.9 21 0.00044 33.8 2.5 21 45-65 163-183 (526)
132 TIGR01460 HAD-SF-IIA Haloacid 41.5 14 0.00031 30.3 1.3 18 53-70 1-18 (236)
133 PF00709 Adenylsucc_synt: Aden 41.0 57 0.0012 30.1 5.2 83 64-162 127-217 (421)
134 PRK14297 chaperone protein Dna 40.7 34 0.00074 30.6 3.7 60 79-139 10-71 (380)
135 PF08769 Spo0A_C: Sporulation 40.1 30 0.00065 25.8 2.7 29 70-100 41-69 (106)
136 PLN02811 hydrolase 40.0 30 0.00066 27.7 3.0 30 57-86 1-30 (220)
137 PRK14292 chaperone protein Dna 40.0 39 0.00085 30.0 3.9 58 79-138 8-67 (371)
138 TIGR01456 CECR5 HAD-superfamil 39.9 28 0.00062 30.1 2.9 19 52-70 2-20 (321)
139 PRK14286 chaperone protein Dna 39.6 58 0.0012 29.1 4.9 60 79-139 10-71 (372)
140 PRK14288 chaperone protein Dna 39.6 68 0.0015 28.6 5.3 60 79-139 9-70 (369)
141 PF00165 HTH_AraC: Bacterial r 39.2 42 0.00091 20.0 2.9 24 72-97 11-34 (42)
142 PRK14276 chaperone protein Dna 38.6 57 0.0012 29.2 4.7 59 79-139 10-70 (380)
143 TIGR01485 SPP_plant-cyano sucr 38.4 34 0.00075 28.0 3.1 31 52-82 3-39 (249)
144 TIGR00184 purA adenylosuccinat 38.4 1.4E+02 0.0029 27.8 7.2 84 63-162 124-215 (425)
145 PRK14291 chaperone protein Dna 38.1 60 0.0013 29.1 4.8 59 79-139 9-69 (382)
146 cd06257 DnaJ DnaJ domain or J- 37.0 41 0.00089 20.7 2.7 25 79-103 6-32 (55)
147 PRK14299 chaperone protein Dna 36.6 61 0.0013 27.9 4.4 60 78-139 9-70 (291)
148 PF07862 Nif11: Nitrogen fixat 36.5 38 0.00082 21.2 2.4 20 69-88 29-48 (49)
149 TIGR01261 hisB_Nterm histidino 35.9 22 0.00048 27.8 1.5 15 51-65 2-16 (161)
150 PF06941 NT5C: 5' nucleotidase 35.4 20 0.00044 28.3 1.2 36 51-89 2-40 (191)
151 COG1647 Esterase/lipase [Gener 34.9 62 0.0013 27.9 4.1 11 109-119 64-74 (243)
152 PTZ00445 p36-lilke protein; Pr 34.8 33 0.00072 29.1 2.5 37 47-83 40-94 (219)
153 TIGR00685 T6PP trehalose-phosp 34.5 25 0.00054 28.9 1.7 17 49-65 2-18 (244)
154 PRK14294 chaperone protein Dna 34.3 75 0.0016 28.3 4.8 60 79-139 10-71 (366)
155 TIGR01668 YqeG_hyp_ppase HAD s 33.6 51 0.0011 25.7 3.2 34 48-82 23-61 (170)
156 PF03767 Acid_phosphat_B: HAD 32.9 27 0.00059 29.0 1.6 15 48-62 70-84 (229)
157 PF09419 PGP_phosphatase: Mito 32.4 33 0.00071 27.7 2.0 19 47-65 38-56 (168)
158 PRK14287 chaperone protein Dna 32.2 72 0.0016 28.5 4.3 59 79-139 10-70 (371)
159 cd02010 TPP_ALS Thiamine pyrop 31.5 73 0.0016 25.0 3.9 28 71-98 128-159 (177)
160 PLN03017 trehalose-phosphatase 31.4 40 0.00088 30.5 2.6 15 48-62 109-123 (366)
161 cd02009 TPP_SHCHC_synthase Thi 31.1 83 0.0018 24.6 4.1 28 71-98 133-164 (175)
162 smart00271 DnaJ DnaJ molecular 30.7 60 0.0013 20.3 2.7 26 78-103 6-33 (60)
163 PRK14282 chaperone protein Dna 30.6 96 0.0021 27.6 4.8 61 78-139 9-72 (369)
164 PRK14285 chaperone protein Dna 30.6 72 0.0016 28.4 4.0 60 78-138 8-69 (365)
165 TIGR02244 HAD-IG-Ncltidse HAD 30.4 51 0.0011 29.5 3.1 29 47-75 9-39 (343)
166 COG4172 ABC-type uncharacteriz 29.6 1.7E+02 0.0037 27.8 6.3 66 46-112 361-433 (534)
167 PRK14298 chaperone protein Dna 29.4 75 0.0016 28.5 4.0 59 79-139 11-71 (377)
168 cd02001 TPP_ComE_PpyrDC Thiami 29.4 96 0.0021 24.0 4.1 29 70-98 112-144 (157)
169 PF08281 Sigma70_r4_2: Sigma-7 29.0 84 0.0018 19.5 3.1 27 69-97 26-52 (54)
170 PRK14283 chaperone protein Dna 29.0 97 0.0021 27.7 4.6 59 79-139 11-71 (378)
171 PHA02530 pseT polynucleotide k 28.6 58 0.0013 27.2 3.0 18 48-65 156-173 (300)
172 COG2179 Predicted hydrolase of 28.3 43 0.00093 27.5 2.0 35 48-82 26-64 (175)
173 cd02003 TPP_IolD Thiamine pyro 28.0 88 0.0019 25.1 3.8 28 71-98 142-173 (205)
174 PF06457 Ectatomin: Ectatomin; 27.7 27 0.00059 21.1 0.6 19 146-164 8-26 (34)
175 PRK14290 chaperone protein Dna 27.4 90 0.002 27.7 4.1 59 79-138 9-70 (365)
176 KOG2134 Polynucleotide kinase 27.1 55 0.0012 30.3 2.7 29 36-66 63-91 (422)
177 COG0241 HisB Histidinol phosph 27.1 71 0.0015 26.1 3.1 44 50-97 5-49 (181)
178 PF13624 SurA_N_3: SurA N-term 26.6 97 0.0021 23.2 3.6 24 71-94 88-111 (154)
179 COG4996 Predicted phosphatase 26.5 35 0.00076 27.4 1.1 26 128-153 127-160 (164)
180 cd02006 TPP_Gcl Thiamine pyrop 26.2 88 0.0019 25.0 3.5 27 71-97 148-178 (202)
181 PF07027 DUF1318: Protein of u 26.2 1.3E+02 0.0029 22.0 4.1 28 69-98 50-77 (95)
182 COG0484 DnaJ DnaJ-class molecu 26.1 1.4E+02 0.003 27.3 5.0 20 83-102 16-35 (371)
183 PRK14301 chaperone protein Dna 25.9 97 0.0021 27.7 4.0 59 79-138 10-70 (373)
184 PRK14296 chaperone protein Dna 25.4 1.2E+02 0.0027 27.0 4.6 59 79-139 10-70 (372)
185 PF10084 DUF2322: Uncharacteri 25.3 1.7E+02 0.0036 22.0 4.5 39 52-92 17-62 (100)
186 PHA02436 hypothetical protein 25.2 37 0.0008 22.2 0.9 22 117-138 10-32 (52)
187 PF14420 Clr5: Clr5 domain 25.1 1.8E+02 0.004 18.7 4.3 30 64-93 19-48 (54)
188 PF11662 DUF3263: Protein of u 24.9 66 0.0014 23.0 2.2 25 110-134 14-44 (77)
189 PF00226 DnaJ: DnaJ domain; I 24.8 94 0.002 19.8 2.9 26 78-103 5-32 (64)
190 KOG1615 Phosphoserine phosphat 24.7 83 0.0018 26.8 3.1 31 47-82 13-43 (227)
191 PF10545 MADF_DNA_bdg: Alcohol 24.6 74 0.0016 21.0 2.4 34 59-92 16-49 (85)
192 TIGR03798 ocin_TIGR03798 bacte 24.6 1.2E+02 0.0026 20.1 3.4 23 69-91 27-49 (64)
193 TIGR01686 FkbH FkbH-like domai 24.1 46 0.00099 28.7 1.6 16 48-63 1-16 (320)
194 PRK14284 chaperone protein Dna 23.7 1.4E+02 0.0031 26.8 4.6 60 79-139 7-68 (391)
195 TIGR01533 lipo_e_P4 5'-nucleot 23.4 49 0.0011 28.5 1.6 17 48-64 73-89 (266)
196 PRK14278 chaperone protein Dna 23.3 1.1E+02 0.0023 27.5 3.8 20 83-102 15-34 (378)
197 TIGR02245 HAD_IIID1 HAD-superf 23.2 53 0.0011 27.0 1.7 16 50-65 21-36 (195)
198 PF09079 Cdc6_C: CDC6, C termi 22.9 1.6E+02 0.0034 20.1 3.9 26 67-92 20-46 (85)
199 cd02004 TPP_BZL_OCoD_HPCL Thia 22.9 1.4E+02 0.0031 22.9 4.0 28 71-98 130-161 (172)
200 PHA03102 Small T antigen; Revi 22.8 1.5E+02 0.0032 23.7 4.1 27 77-103 9-39 (153)
201 PRK13786 adenylosuccinate synt 22.4 1.9E+02 0.0041 26.9 5.2 82 64-161 127-217 (424)
202 PF09682 Holin_LLH: Phage holi 22.1 1.1E+02 0.0024 22.5 3.1 27 74-100 79-105 (108)
203 PF05402 PqqD: Coenzyme PQQ sy 21.9 57 0.0012 21.2 1.4 35 126-162 32-67 (68)
204 cd02013 TPP_Xsc_like Thiamine 21.7 1.2E+02 0.0026 24.2 3.5 27 71-97 134-164 (196)
205 cd02015 TPP_AHAS Thiamine pyro 21.7 1.6E+02 0.0034 23.0 4.1 28 71-98 132-163 (186)
206 PRK11009 aphA acid phosphatase 21.5 60 0.0013 27.4 1.7 16 49-64 62-77 (237)
207 PRK01117 adenylosuccinate synt 21.5 3.7E+02 0.008 25.0 6.9 35 63-97 128-166 (430)
208 KOG3439 Protein conjugation fa 21.4 49 0.0011 25.5 1.1 22 120-141 82-103 (116)
209 PF12471 GTP_CH_N: GTP cyclohy 20.9 3.2E+02 0.0069 22.8 5.8 119 11-136 54-194 (194)
210 cd02014 TPP_POX Thiamine pyrop 20.9 1.5E+02 0.0034 23.0 3.9 29 71-99 131-163 (178)
211 PF09312 SurA_N: SurA N-termin 20.9 1.1E+02 0.0024 22.5 2.9 26 73-98 57-82 (118)
212 PF02775 TPP_enzyme_C: Thiamin 20.8 1.2E+02 0.0027 22.7 3.2 29 71-99 112-146 (153)
213 smart00788 Adenylsucc_synt Ade 20.6 5.3E+02 0.012 23.9 7.8 35 63-97 126-164 (421)
214 PF04545 Sigma70_r4: Sigma-70, 20.1 1.5E+02 0.0032 18.2 3.0 27 70-98 21-47 (50)
215 cd02002 TPP_BFDC Thiamine pyro 20.1 1.8E+02 0.004 22.3 4.1 28 71-98 137-168 (178)
216 COG2157 RPL20A Ribosomal prote 20.0 1.2E+02 0.0027 22.1 2.8 36 64-99 34-80 (85)
217 PF03732 Retrotrans_gag: Retro 20.0 87 0.0019 20.9 2.0 33 107-139 8-42 (96)
No 1
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.78 E-value=8e-19 Score=147.84 Aligned_cols=121 Identities=31% Similarity=0.365 Sum_probs=98.5
Q ss_pred cCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCC---CC--CchhHHHHHHHHH
Q 030985 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRY---EG--DGRPFWRLVVSEA 121 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y---~g--~~~~WW~~vV~~t 121 (168)
.+++|+||||++|||+.++++++++|+++++++|++++++.++..|+++|+++++.+|+| .| ++++||..||.++
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~ 83 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST 83 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999987776666 56 8999999999999
Q ss_pred hCCCchHHHHHHH--------HhhCCCCceee-ccHHHHHhhhhhcCCccccCCCC
Q 030985 122 TGCTNDDYFEEVY--------EVSFYETYVLT-FLIPKLSLQVKECSGLLETGSNF 168 (168)
Q Consensus 122 fg~~~~~l~~eLy--------~~F~se~w~ly-DViP~L~~~~k~~~g~~~~~~~~ 168 (168)
|+..+.+..++++ +.|++.+|.+. ..+++|+++.++. =.|-+-|||
T Consensus 84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g-~~l~iisN~ 138 (237)
T KOG3085|consen 84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKG-TILGIISNF 138 (237)
T ss_pred hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCC-eEEEEecCC
Confidence 9866544444444 44444699988 6669999876654 233444444
No 2
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.24 E-value=8.1e-11 Score=93.44 Aligned_cols=105 Identities=33% Similarity=0.537 Sum_probs=88.4
Q ss_pred cEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCC---C-CchhHHHHHHHHHhCC--
Q 030985 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYE---G-DGRPFWRLVVSEATGC-- 124 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~---g-~~~~WW~~vV~~tfg~-- 124 (168)
|+|.||++|||+.......+.+.++++++|++++++++...|.+.|+.....++.+. | ...+||..++.+++..
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999998899999999998766666652 4 6678999999988752
Q ss_pred -Cc----hHHHHHHHHhhCC-CCceee-ccHHHHHhhh
Q 030985 125 -TN----DDYFEEVYEVSFY-ETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 125 -~~----~~l~~eLy~~F~s-e~w~ly-DViP~L~~~~ 155 (168)
.+ ++++++++++|.. ..|.++ ++.++|+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~ 118 (203)
T TIGR02252 81 VPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLR 118 (203)
T ss_pred CCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHH
Confidence 11 3678888888876 778999 9999999854
No 3
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.95 E-value=4.2e-05 Score=61.11 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=42.5
Q ss_pred ccEEEEecCCccccccCCHHHHHHHH---HHHcCCCCCHHHHHHHHHHHhhccC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNVDSADIKKGFRKAFAAPW 100 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v~~e~l~~~F~~afk~~~ 100 (168)
+++|.||++|||+...+.+.+.+.++ ..++|++++.+++...|.+.++...
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 55 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYG 55 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhc
Confidence 68899999999999998887776654 4688999999999888888777543
No 4
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.78 E-value=0.00023 Score=56.99 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=37.6
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHH
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKG 91 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~ 91 (168)
+++|.||.+|||+...+...+.|.++++++|++.+++++.+.
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~ 42 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSA 42 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 588999999999999999999999999999999887766653
No 5
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.58 E-value=0.00012 Score=59.00 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=58.5
Q ss_pred CccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHh-CCCc
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDS-ADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCTN 126 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~-e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tf-g~~~ 126 (168)
.++.|.||.+|||+...+.....+.++++++|++.+. +.+...+....+ .....|.+.. .. +...
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~-----------~~~~~~~~~~--~~~~~~~ 72 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRID-----------QVVDLWYARQ--PWNGPSR 72 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHH-----------HHHHHHHHhc--CCCCCCH
Confidence 4889999999999999988889999999999998775 444332211000 0111222110 01 1112
Q ss_pred hHHHHHHHHhhCC---CCceee-ccHHHHHhhh
Q 030985 127 DDYFEEVYEVSFY---ETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 127 ~~l~~eLy~~F~s---e~w~ly-DViP~L~~~~ 155 (168)
+++..++++++.. +.+.+| +|.++|+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~ 105 (222)
T PRK10826 73 QEVVQRIIARVISLIEETRPLLPGVREALALCK 105 (222)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 3555666665543 457888 9999998743
No 6
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.58 E-value=0.00059 Score=53.16 Aligned_cols=41 Identities=22% Similarity=0.548 Sum_probs=35.9
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADI 88 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l 88 (168)
.++++|.||.+|||+.......+.+.++++++|++++.+.+
T Consensus 3 ~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~ 43 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAM 43 (188)
T ss_pred CcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 35789999999999999998999999999999998776543
No 7
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.46 E-value=0.00048 Score=54.91 Aligned_cols=114 Identities=18% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hhccCCCCCCCCC-CchhHHHHHHHHH--h
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKA--FAAPWPEKLRYEG-DGRPFWRLVVSEA--T 122 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~a--fk~~~p~~p~y~g-~~~~WW~~vV~~t--f 122 (168)
+.+|+|+||++|||+.....+..++.......+............... ++... .+.+.+ ....++ .+.... .
T Consensus 2 ~~~k~i~FD~d~TL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 78 (229)
T COG1011 2 MMIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIEKLEARFL--RGEYTGEYGLTLE-RLLELLERL 78 (229)
T ss_pred CceeEEEEecCCcccccchHHhHHHHHHHHHhchHHHhhhhHHHHHHHHHHHHHH--cccchHHHhhhHH-HHHHHHHhh
Confidence 568999999999999999999988888887777775544333333332 22111 011111 111121 122111 1
Q ss_pred -CCCchHHHHHHHHhhCCCCceee-ccHHHHHhhhhh-cCCccccC
Q 030985 123 -GCTNDDYFEEVYEVSFYETYVLT-FLIPKLSLQVKE-CSGLLETG 165 (168)
Q Consensus 123 -g~~~~~l~~eLy~~F~se~w~ly-DViP~L~~~~k~-~~g~~~~~ 165 (168)
.......+++++..+.. .|..+ +++++|+.+-+. .-|++.-|
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~~~l~ilTNg 123 (229)
T COG1011 79 LGDEDAELVEELLAALAK-LLPDYPEALEALKELGKKYKLGILTNG 123 (229)
T ss_pred cccccHHHHHHHHHHHHh-hCccChhHHHHHHHHHhhccEEEEeCC
Confidence 23334666666666443 67888 999999974443 24555443
No 8
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.43 E-value=0.00089 Score=53.19 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=33.8
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHH
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSAD 87 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~ 87 (168)
+|+|.||++|||+.......+.+.++.+++|+..+.+.
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~ 38 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDM 38 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHH
Confidence 58899999999999999889899999999999876543
No 9
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.38 E-value=0.0013 Score=50.86 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=56.7
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHh-CCCch-
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEAT-GCTND- 127 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tf-g~~~~- 127 (168)
+++|.||++|||+...+.....+.++++++|+.++.+ +...+. ..+..+.|..+..+.. +...+
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~ 66 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQ-----YNTSLG---------GLSREDILRAILKLRKPGLSLET 66 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHH-----HHHHcC---------CCCHHHHHHHHHHhcCCCCCHHH
Confidence 5789999999999999877788899999999986632 222111 1123445555544321 12211
Q ss_pred -----HHHHHHHHhhCC-CCceee-ccHHHHHhhhh
Q 030985 128 -----DYFEEVYEVSFY-ETYVLT-FLIPKLSLQVK 156 (168)
Q Consensus 128 -----~l~~eLy~~F~s-e~w~ly-DViP~L~~~~k 156 (168)
+.+.++|.+.-. ....++ ++..+|+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~ 102 (185)
T TIGR02009 67 IHQLAERKNELYRELLRLTGAEVLPGIENFLKRLKK 102 (185)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence 233344444332 345778 88888887533
No 10
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.33 E-value=0.00034 Score=55.30 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=49.5
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCCC---CchhHHHHHHHHHhCCC-
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEG---DGRPFWRLVVSEATGCT- 125 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~g---~~~~WW~~vV~~tfg~~- 125 (168)
+|+|+||++|||+...+ +.+...++....|..+........+...+.... -++|.. -.++.+..+ .+.+|..
T Consensus 1 ik~viFD~dgTLiD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~-~~~~g~~~ 76 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHS-VVERFAELYGGRGEALSQLWRQKQLEYSWLRTL--MGPYADFWDLTREALRYL-LGRLGLED 76 (198)
T ss_pred CcEEEEeCCCcCccHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc--cCCCcCHHHHHHHHHHHH-HHHcCCCC
Confidence 57899999999999884 344444444444333322222222222222111 112221 011222222 2234543
Q ss_pred chHHHHHHHHhhCCCCceee-ccHHHHHhhh
Q 030985 126 NDDYFEEVYEVSFYETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 126 ~~~l~~eLy~~F~se~w~ly-DViP~L~~~~ 155 (168)
.+...+++++.+. .+.++ ++.++|+.+.
T Consensus 77 ~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~ 105 (198)
T TIGR01428 77 DESAADRLAEAYL--RLPPHPDVPAGLRALK 105 (198)
T ss_pred CHHHHHHHHHHHh--cCCCCCCHHHHHHHHH
Confidence 2344556666553 35678 9999999844
No 11
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.33 E-value=0.00037 Score=55.97 Aligned_cols=42 Identities=21% Similarity=0.464 Sum_probs=36.7
Q ss_pred CccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHH
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKK 90 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~ 90 (168)
++++|.||.+|||+...+...+.|.++++++|+.++.+++.+
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~ 44 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFK 44 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 589999999999999888888999999999999988765443
No 12
>PRK09449 dUMP phosphatase; Provisional
Probab=97.32 E-value=0.0012 Score=53.02 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=54.3
Q ss_pred CccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHH--HHHHhhccCCCCCCCCCCchhHHH---HHHHHHhC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKG--FRKAFAAPWPEKLRYEGDGRPFWR---LVVSEATG 123 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~--F~~afk~~~p~~p~y~g~~~~WW~---~vV~~tfg 123 (168)
++|+|.||.+|||+... ..+...++++++|+.++++.+..- +...+.. .+-...-...+.+. +.+.+.++
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWV---DYQNGAITALQLQHTRFESWAEKLN 76 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 58899999999999743 345667888999998876655432 1111110 00000001222221 12334455
Q ss_pred CCchHHHHHHHHhhCCCCceee-ccHHHHHhhh
Q 030985 124 CTNDDYFEEVYEVSFYETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 124 ~~~~~l~~eLy~~F~se~w~ly-DViP~L~~~~ 155 (168)
...+.+.+...+++. +.+.++ ++.++|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~L~~L~ 108 (224)
T PRK09449 77 VTPGELNSAFLNAMA-EICTPLPGAVELLNALR 108 (224)
T ss_pred CCHHHHHHHHHHHHh-hcCccCccHHHHHHHHH
Confidence 543333333333332 235678 8999998754
No 13
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.23 E-value=0.0013 Score=54.20 Aligned_cols=105 Identities=14% Similarity=0.079 Sum_probs=59.9
Q ss_pred cCCccEEEEecCCccccccCCHHHHHHHHHHHcCCC------CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHH
Q 030985 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN------VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSE 120 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~------v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~ 120 (168)
+.++|+|+||++|||+...+-+...+.++++..|.. .+.+.+.. ++..+....+.. |. .-..|+...+..
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~-~~~~~~~~~l~~ 82 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQR-LRQALREAEPEI--YH-DVTRWRWRAIEQ 82 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHH-HHHHHHHhCchh--hC-cHHHHHHHHHHH
Confidence 456899999999999999877777777766554211 23333332 444444322211 11 123355455544
Q ss_pred Hh---CCCch---HHHHHHHHhhCC--CCceee-ccHHHHHhhh
Q 030985 121 AT---GCTND---DYFEEVYEVSFY--ETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 121 tf---g~~~~---~l~~eLy~~F~s--e~w~ly-DViP~L~~~~ 155 (168)
.+ |...+ ...++.+++|.. ....+| +|.++|+.+-
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~ 126 (238)
T PRK10748 83 AMLDAGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLA 126 (238)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 44 44332 344555555543 335678 9999999863
No 14
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.21 E-value=0.00012 Score=54.64 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=59.3
Q ss_pred EEEecCCccccccCCHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHH
Q 030985 53 VLLDAGGTLLQLAEPVEETYAS-IARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFE 131 (168)
Q Consensus 53 VtFDA~GTLi~~r~pV~e~Ya~-va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~ 131 (168)
|.||++|||+.......+.+.+ +++.+|++.+.+.+++.+... ..+.|..++.+.- . ...-+.
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-~-~~~~~~ 64 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKS--------------YEEALERLLERFG-I-DPEEIQ 64 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSH--------------HHHHHHHHHHHHH-H-HHHHHH
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCC--------------HHHHHHHhhhccc-h-hHHHHH
Confidence 7899999999988767778887 578898886666665554222 2234555554331 1 134455
Q ss_pred HHHHhhCC-CCceee-ccHHHHHhhhhhcCCc
Q 030985 132 EVYEVSFY-ETYVLT-FLIPKLSLQVKECSGL 161 (168)
Q Consensus 132 eLy~~F~s-e~w~ly-DViP~L~~~~k~~~g~ 161 (168)
+++..+.. ....++ ++.++|+.+ ++.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~ 95 (176)
T PF13419_consen 65 ELFREYNLESKLQPYPGVRELLERL-KAKGIP 95 (176)
T ss_dssp HHHHHHHHHGGEEESTTHHHHHHHH-HHTTSE
T ss_pred HHhhhhhhhhccchhhhhhhhhhhc-ccccce
Confidence 66666533 567888 999999985 444443
No 15
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.19 E-value=0.00063 Score=52.49 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=56.5
Q ss_pred EEEEecCCccccccCCHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCC-ch
Q 030985 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLN---VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT-ND 127 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~---v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~-~~ 127 (168)
+|+||++|||+.....+.+.+..+++++|.. .+.+++...+.......+ ..|..-.+..+. .+.+.+|.. .+
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~g~~~~~ 76 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDR---RAFPEDTVRALR-YIADRLGLDAEP 76 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCc---CCHHHHHHHHHH-HHHHHcCCCCCH
Confidence 4899999999999999999999888886643 334445555554443211 111111112233 344555654 23
Q ss_pred HHHHHHHHhhCCCCceee-ccHHHHHh
Q 030985 128 DYFEEVYEVSFYETYVLT-FLIPKLSL 153 (168)
Q Consensus 128 ~l~~eLy~~F~se~w~ly-DViP~L~~ 153 (168)
+..+.+.+.+. .+.++ ++.++|+.
T Consensus 77 ~~~~~~~~~~~--~~~~~~g~~~~L~~ 101 (175)
T TIGR01493 77 KYGERLRDAYK--NLPPWPDSAAALAR 101 (175)
T ss_pred HHHHHHHHHHh--cCCCCCchHHHHHH
Confidence 34455544443 34577 99999984
No 16
>PLN02940 riboflavin kinase
Probab=97.17 E-value=0.0017 Score=57.84 Aligned_cols=94 Identities=21% Similarity=0.160 Sum_probs=60.1
Q ss_pred ccCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCC
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT 125 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~ 125 (168)
....+++|.||.+|||+.......+.+.++++++|+.++++++.+.+. ....+.|..+..+ ++..
T Consensus 7 ~~~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G--------------~~~~~~~~~~~~~-~~~~ 71 (382)
T PLN02940 7 LKKLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVG--------------KTPLEAAATVVED-YGLP 71 (382)
T ss_pred ccccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcC--------------CCHHHHHHHHHHH-hCCC
Confidence 345699999999999999999899999999999999888766543221 1334566655433 3322
Q ss_pred --chHHHHHHHHhhCC--CCceee-ccHHHHHhh
Q 030985 126 --NDDYFEEVYEVSFY--ETYVLT-FLIPKLSLQ 154 (168)
Q Consensus 126 --~~~l~~eLy~~F~s--e~w~ly-DViP~L~~~ 154 (168)
.+++..++.+.+.. +.-.++ ++.++|+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~L 105 (382)
T PLN02940 72 CSTDEFNSEITPLLSEQWCNIKALPGANRLIKHL 105 (382)
T ss_pred CCHHHHHHHHHHHHHHHHccCCCCcCHHHHHHHH
Confidence 23333333333321 223466 777777764
No 17
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.08 E-value=0.0016 Score=51.97 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=35.5
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCC-CCHHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIK 89 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~-v~~e~l~ 89 (168)
..+++|.||.+|||+.........+.++++++|++ .+.+.+.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVR 46 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 56899999999999998888888999999999998 4555554
No 18
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.06 E-value=0.005 Score=50.63 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=36.6
Q ss_pred CccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHH
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKG 91 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~ 91 (168)
.+++|.||.+|||+...+-..+.+.++++++|+.++.+.....
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~ 43 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIREL 43 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3789999999999999766677899999999999998766543
No 19
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.99 E-value=0.0045 Score=62.01 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=64.1
Q ss_pred ccCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCC-
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC- 124 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~- 124 (168)
-.+.+++|.||++|||+.-.....+.+.++++++|++++++++...+ .....++|..+... ++.
T Consensus 71 ~~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~--------------G~~~~~~~~~~~~~-~~l~ 135 (1057)
T PLN02919 71 EWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFM--------------GTGEANFLGGVASV-KGVK 135 (1057)
T ss_pred cCCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHh--------------CCCHHHHHHHHHHh-cCCC
Confidence 35679999999999999999888899999999999998877654322 11345677665542 332
Q ss_pred --CchHHHHHHH----HhhCC-CCceee-ccHHHHHhhh
Q 030985 125 --TNDDYFEEVY----EVSFY-ETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 125 --~~~~l~~eLy----~~F~s-e~w~ly-DViP~L~~~~ 155 (168)
..++..++++ ++|.. +...+| ++.++|+++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~elL~~Lk 174 (1057)
T PLN02919 136 GFDPDAAKKRFFEIYLEKYAKPNSGIGFPGALELITQCK 174 (1057)
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCccCccHHHHHHHHH
Confidence 2233333333 33433 344568 8888888754
No 20
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.92 E-value=0.0034 Score=53.09 Aligned_cols=94 Identities=16% Similarity=0.048 Sum_probs=57.3
Q ss_pred CCccEEEEecCCccccccCCHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCc
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVE-ETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN 126 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~-e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~ 126 (168)
..+|+|.||.+|||+.-...+. +.+.++++++|+.+++++..+.+ . .....+.++.+... ....
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~----~---------G~~~~~~~~~l~~~--~~~~ 86 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRA----E---------GMKNEQAISEVLCW--SRDF 86 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHh----c---------CCCHHHHHHHHhcc--CCCH
Confidence 4589999999999999766655 58899999999998765443221 0 01223333333211 1111
Q ss_pred ------hHHHHHHHHhhCCCCceee-ccHHHHHhhhh
Q 030985 127 ------DDYFEEVYEVSFYETYVLT-FLIPKLSLQVK 156 (168)
Q Consensus 127 ------~~l~~eLy~~F~se~w~ly-DViP~L~~~~k 156 (168)
.+.+.++|.++....+.+| ++.++|+.+.+
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~~l~pg~~e~L~~L~~ 123 (260)
T PLN03243 87 LQMKRLAIRKEDLYEYMQGGLYRLRPGSREFVQALKK 123 (260)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccCCCHHHHHHHHHH
Confidence 1234455544434567788 89999888543
No 21
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.86 E-value=0.0033 Score=52.17 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=31.0
Q ss_pred cCCccEEEEecCCccccccCCHHHHHHHHHHHcCC
Q 030985 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGL 81 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi 81 (168)
...+++|.||.+|||+.-.....+.+.++++++|+
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~ 53 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINF 53 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhcc
Confidence 45589999999999999988888889999999965
No 22
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.84 E-value=0.0011 Score=52.78 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=48.9
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccC-CCCCC-C-CC--CchhHHHHHHHHHhCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPW-PEKLR-Y-EG--DGRPFWRLVVSEATGC 124 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~-p~~p~-y-~g--~~~~WW~~vV~~tfg~ 124 (168)
+++|.||.+|||+.... +.+........+|+. +++... .+.... +.... + .| +..+||..+ .+.++.
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~--~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~ 73 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK--DFIVTV----NITGPDFNPWARTFERGELTAEAFDGLF-RHEYGL 73 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc--cHHHHH----HhcCCCCChHHHHHHcCCCCHHHHHHHH-HHHhcc
Confidence 68999999999999743 444444433445553 332222 222111 11111 1 12 234555444 444442
Q ss_pred --CchHHHHHHHHhhCCCCceee-ccHHHHHhhh
Q 030985 125 --TNDDYFEEVYEVSFYETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 125 --~~~~l~~eLy~~F~se~w~ly-DViP~L~~~~ 155 (168)
..+....+.+..+......++ +++++|+.+-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 107 (211)
T TIGR02247 74 RLGHDVRIAPVFPLLYGENTKLRPSMMAAIKTLR 107 (211)
T ss_pred ccCCCcCchhhHHHHhccccccChhHHHHHHHHH
Confidence 222223344443333456778 9999998743
No 23
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.75 E-value=0.01 Score=48.48 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=37.8
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGFR 93 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~-v~~e~l~~~F~ 93 (168)
..+++|.||.+|||+.-..-..+.+..+++++|++ .+.+.+...+.
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g 56 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVS 56 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhh
Confidence 34689999999999999888888888999999997 67766655543
No 24
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.71 E-value=0.0027 Score=52.26 Aligned_cols=42 Identities=14% Similarity=0.351 Sum_probs=34.4
Q ss_pred ccEEEEecCCccccccCC-HHHHHHHHHHHcCCCCCHHHHHHH
Q 030985 50 YDAVLLDAGGTLLQLAEP-VEETYASIARKYGLNVDSADIKKG 91 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~p-V~e~Ya~va~~~Gi~v~~e~l~~~ 91 (168)
+++|.||.+|||+..... ..+.+.++++++|++++++++.+.
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~ 44 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGP 44 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHh
Confidence 789999999999997543 467888999999999888766543
No 25
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.64 E-value=0.0035 Score=51.12 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=39.3
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCC-CCHHHHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKG 91 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~-v~~e~l~~~ 91 (168)
+.++.|.||.+|||+...+........+++++|+. ++++++..-
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQL 46 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 46889999999999999999999999999999999 888887663
No 26
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.57 E-value=0.0038 Score=52.07 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=34.0
Q ss_pred CCccEEEEecCCccccccCCH-HHHHHHHHHHcCCCCCHHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLAEPV-EETYASIARKYGLNVDSADIK 89 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV-~e~Ya~va~~~Gi~v~~e~l~ 89 (168)
..+|+|.||.+|||+...... .+.+.++++++|++++.+++.
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~ 44 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEAR 44 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHH
Confidence 358899999999999975443 578889999999988776654
No 27
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.40 E-value=0.012 Score=49.85 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=32.4
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVD 84 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~ 84 (168)
+++|.||.+|||+...+-....+.++++++|++..
T Consensus 13 ~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~ 47 (272)
T PRK13223 13 PRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPA 47 (272)
T ss_pred CCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCC
Confidence 78999999999999998899999999999999854
No 28
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.26 E-value=0.0064 Score=48.66 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=36.0
Q ss_pred CccEEEEecCCccccccCCHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKKGF 92 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~-v~~e~l~~~F 92 (168)
.+++|.||.+|||+.......+.+.++++++|.. ++.+++...+
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 46 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFI 46 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHh
Confidence 4789999999999999988888999999999875 6666555443
No 29
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.05 E-value=0.025 Score=51.12 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=55.6
Q ss_pred CccEEEEecCCccccccCCHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCC-c
Q 030985 49 AYDAVLLDAGGTLLQLAEPVE-ETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT-N 126 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~-e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~-~ 126 (168)
.++.|.||.+|||+.-.+.+. +.+.++++++|+++.++++.+.+. .....+-|..+........ -
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~-------------G~~~~~~l~~ll~~~~~~~~~ 196 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVE-------------GMKNEQAISEVLCWSRDPAEL 196 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhc-------------CCCHHHHHHHHhhccCCHHHH
Confidence 689999999999998765444 588889999999977665433321 0022233333322100000 0
Q ss_pred h---HHHHHHHHhhCCCCceee-ccHHHHHhhh
Q 030985 127 D---DYFEEVYEVSFYETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 127 ~---~l~~eLy~~F~se~w~ly-DViP~L~~~~ 155 (168)
+ +.+.++|.....+.+.+| .+.++|+.+.
T Consensus 197 e~l~~~~~~~y~~~~~~~~~l~pGa~ElL~~Lk 229 (381)
T PLN02575 197 RRMATRKEEIYQALQGGIYRLRTGSQEFVNVLM 229 (381)
T ss_pred HHHHHHHHHHHHHHhccCCCcCcCHHHHHHHHH
Confidence 1 233444444444567888 8888888753
No 30
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.04 E-value=0.016 Score=45.82 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=31.6
Q ss_pred EEEecCCccccccCCHHHHHHHHHHHcCCC-CCHHHHHH
Q 030985 53 VLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKK 90 (168)
Q Consensus 53 VtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~-v~~e~l~~ 90 (168)
|.||.+|||+...+...+.+.++++++|+. .+.+.+..
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIG 39 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHH
Confidence 579999999998877888889999999997 66665543
No 31
>PRK11587 putative phosphatase; Provisional
Probab=95.88 E-value=0.0074 Score=48.69 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=31.5
Q ss_pred CccEEEEecCCccccccCCHHHHHHHHHHHcCCC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~ 82 (168)
.+++|.||.+|||+.-.+...+.+.++++++|++
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~ 35 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIA 35 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCC
Confidence 5788999999999999998999999999999986
No 32
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.83 E-value=0.013 Score=46.40 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=34.7
Q ss_pred EEEEecCCccccccCCHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 030985 52 AVLLDAGGTLLQLAEPVEETYASIARKYG-LNVDSADIKKGF 92 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e~Ya~va~~~G-i~v~~e~l~~~F 92 (168)
+|.||.+|||+...+...+.+.++++++| ..++.+++.+-+
T Consensus 2 ~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~ 43 (197)
T TIGR01548 2 ALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTK 43 (197)
T ss_pred ceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 58999999999999999999999999998 567877765443
No 33
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.76 E-value=0.012 Score=45.50 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.5
Q ss_pred EEEEecCCccccccCCHHHHHHHHHHHcCCCCCHH
Q 030985 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSA 86 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e 86 (168)
+|.||.+|||+...+.....+.++++++|++++.+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~ 35 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEE 35 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHH
Confidence 48999999999999988889999999999987754
No 34
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.67 E-value=0.029 Score=44.28 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=25.5
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHH
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKG 91 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~ 91 (168)
+|+|.||++|||+...... .++.+++|++. +++...
T Consensus 2 ~k~viFDlDGTLiD~~~~~----~~~~~~~g~~~--~~~~~~ 37 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGL----PYFAQKYNIPT--DHILKM 37 (197)
T ss_pred CcEEEEecCCceEchhhcc----HHHHHhcCCCH--HHHHHH
Confidence 5789999999999965443 35667899753 444433
No 35
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=95.48 E-value=0.015 Score=49.53 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=34.6
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCC-CCHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADI 88 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~-v~~e~l 88 (168)
+.+++|.||.+|||+...+-+.+.+.++++++|++ ++.+.+
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~ 101 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDY 101 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHH
Confidence 47999999999999998888888899999999997 554433
No 36
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.43 E-value=0.022 Score=48.68 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=30.1
Q ss_pred CCccEEEEecCCcccccc-CCHHHHHHHHHHHcCC
Q 030985 48 KAYDAVLLDAGGTLLQLA-EPVEETYASIARKYGL 81 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r-~pV~e~Ya~va~~~Gi 81 (168)
.++++|.||.+|||+... .-..+.+.++++++|+
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~ 72 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGL 72 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCC
Confidence 558999999999999998 5556788999999999
No 37
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.09 E-value=0.058 Score=48.83 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=33.0
Q ss_pred cccccCCCcccCCccEEEEecCCccccccCCHHHHHHHHHHHcC
Q 030985 37 PLHSGVGKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYG 80 (168)
Q Consensus 37 ~~~~~~~~~~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~G 80 (168)
...+| + .+.++.|.||.+|||+...+...+.+.++.+++|
T Consensus 232 ~~~~~--~--~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~ 271 (459)
T PRK06698 232 YSSKG--E--NEMLQALIFDMDGTLFQTDKILELSLDDTFDHLR 271 (459)
T ss_pred ccccc--h--HHhhhheeEccCCceecchhHHHHHHHHHHHHHh
Confidence 33455 5 4557899999999999999999999999998885
No 38
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=94.92 E-value=0.15 Score=41.75 Aligned_cols=47 Identities=28% Similarity=0.478 Sum_probs=29.4
Q ss_pred CCccEEEEecCCccccccCCHHHHH-----HHHHHHcCCCCCHHHHHHHHHHHhh
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETY-----ASIARKYGLNVDSADIKKGFRKAFA 97 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Y-----a~va~~~Gi~v~~e~l~~~F~~afk 97 (168)
+++|+|.||.+|||+.-... ...+ ..+++.+|+. .++..+.+...|.
T Consensus 8 ~~~k~vIFDlDGTL~d~~~~-~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~~~~ 59 (224)
T PRK14988 8 QDVDTVLLDMDGTLLDLAFD-NYFWQKLVPETLGAQRGIS--PQEAQEYIRQEYH 59 (224)
T ss_pred ccCCEEEEcCCCCccchhhh-chHHHhhHHHHHHHHhCcC--HHHHHHHHHHHHH
Confidence 45899999999999994211 1111 2344677874 5555666655443
No 39
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.79 E-value=0.036 Score=44.29 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=26.3
Q ss_pred cCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCH
Q 030985 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDS 85 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~ 85 (168)
.+.+++|+||++|||+.. +.+.++++.+|.+...
T Consensus 11 ~~~~k~iiFD~DGTL~~~-----~~~~~l~~~~g~~~~~ 44 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINA-----ETIDEIAKIAGVEEEV 44 (219)
T ss_pred hccCCEEEEeCcccCCCc-----hHHHHHHHHhCCHHHH
Confidence 556789999999999985 3566778888886433
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=94.65 E-value=0.23 Score=39.38 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=47.4
Q ss_pred cEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCCCC-CC--CchhHHHHHHHHHhCCC-c
Q 030985 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAPWPEKLRY-EG--DGRPFWRLVVSEATGCT-N 126 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~p~~p~y-~g--~~~~WW~~vV~~tfg~~-~ 126 (168)
++|.||.+|||+... .....+......|+ ..+++...+.. .+....+ .| +..+||..+.. .++.. +
T Consensus 1 ~~viFDldgvL~d~~--~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~ 70 (199)
T PRK09456 1 MLYIFDLGNVIVDID--FNRVLGVWSDLSRV--PLATLKKRFTM-----GEAFHQHERGEISDEAFAEALCH-EMALSLS 70 (199)
T ss_pred CEEEEeCCCccccCc--HHHHHHHHHHhcCC--CHHHHHHHHhc-----CcHHHHHhcCCCCHHHHHHHHHH-HhCCCCC
Confidence 479999999999874 23333333333443 34444444331 1111111 22 46777766554 45543 2
Q ss_pred -hHHHHHHHHhhCCCCceee-ccHHHHHhhh
Q 030985 127 -DDYFEEVYEVSFYETYVLT-FLIPKLSLQV 155 (168)
Q Consensus 127 -~~l~~eLy~~F~se~w~ly-DViP~L~~~~ 155 (168)
+++.....+.+ ..++ +++++|+.+.
T Consensus 71 ~~~~~~~~~~~~----~~~~~g~~e~L~~l~ 97 (199)
T PRK09456 71 YEQFAHGWQAVF----VALRPEVIAIMHKLR 97 (199)
T ss_pred HHHHHHHHHHHH----hccCHHHHHHHHHHH
Confidence 34444333333 2367 8888888743
No 41
>PLN02954 phosphoserine phosphatase
Probab=94.56 E-value=0.05 Score=43.60 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=25.5
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCCC
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNV 83 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v 83 (168)
+.+|+|.||.+|||+.- +.+..+++.+|...
T Consensus 10 ~~~k~viFDfDGTL~~~-----~~~~~~~~~~g~~~ 40 (224)
T PLN02954 10 RSADAVCFDVDSTVCVD-----EGIDELAEFCGAGE 40 (224)
T ss_pred ccCCEEEEeCCCcccch-----HHHHHHHHHcCChH
Confidence 45899999999999985 45677888888853
No 42
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=94.43 E-value=0.039 Score=41.53 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=29.4
Q ss_pred EEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHH
Q 030985 52 AVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIK 89 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~ 89 (168)
+|.||.+|||+.....+.....++++++|. +.+.+.
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~ 36 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALK 36 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHH
Confidence 489999999999988888888899999986 444443
No 43
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=93.68 E-value=0.099 Score=45.89 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=31.1
Q ss_pred CcccCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHH
Q 030985 44 KSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKK 90 (168)
Q Consensus 44 ~~~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~ 90 (168)
.+.++++|+|.||.+|||+ ..+..-++++.+|+.....++.+
T Consensus 104 ~~~~~~~~LvvfDmDGTLI-----~~e~i~eia~~~g~~~~v~~it~ 145 (322)
T PRK11133 104 IPHLRTPGLLVMDMDSTAI-----QIECIDEIAKLAGTGEEVAEVTE 145 (322)
T ss_pred cccccCCCEEEEECCCCCc-----chHHHHHHHHHhCCchHHHHHHH
Confidence 4567889999999999999 33567778888888654444433
No 44
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.07 E-value=0.098 Score=43.74 Aligned_cols=37 Identities=19% Similarity=0.067 Sum_probs=27.3
Q ss_pred cCCccEEEEecCCccccccCCH-HHHHHH--HHHHcCCCC
Q 030985 47 KKAYDAVLLDAGGTLLQLAEPV-EETYAS--IARKYGLNV 83 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r~pV-~e~Ya~--va~~~Gi~v 83 (168)
++.+++|++|++|||+.....+ .+.... -+++.|+.+
T Consensus 4 ~~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~ 43 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPV 43 (271)
T ss_pred cCCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeE
Confidence 5679999999999999876655 233333 356899984
No 45
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=92.98 E-value=0.22 Score=38.81 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=24.5
Q ss_pred EEEEecCCccccccCCHHHHHHHHH-----HHcCCC
Q 030985 52 AVLLDAGGTLLQLAEPVEETYASIA-----RKYGLN 82 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e~Ya~va-----~~~Gi~ 82 (168)
+|.||.+|||+.....+...+.+++ +++|++
T Consensus 2 ~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~ 37 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLS 37 (184)
T ss_pred eEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcC
Confidence 6999999999998877777776654 367775
No 46
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=92.31 E-value=0.14 Score=40.37 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=20.9
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~ 82 (168)
+++|.||.+|||+. +.+..+++++|++
T Consensus 1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~ 27 (205)
T PRK13582 1 MEIVCLDLEGVLVP------EIWIAFAEKTGIP 27 (205)
T ss_pred CeEEEEeCCCCChh------hHHHHHHHHcCCh
Confidence 47899999999992 2445678888875
No 47
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=92.18 E-value=0.12 Score=41.37 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=25.2
Q ss_pred CccEEEEecCCccccccCCHHH-HHHHH--HHHcCCCC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEE-TYASI--ARKYGLNV 83 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e-~Ya~v--a~~~Gi~v 83 (168)
.+|+|++|.+|||+.....+.+ ....+ +++.|+.+
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~ 39 (230)
T PRK01158 2 KIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPV 39 (230)
T ss_pred ceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEE
Confidence 4799999999999987765543 33333 35689884
No 48
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=91.95 E-value=0.15 Score=40.48 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=30.0
Q ss_pred EEEecCCccccccCCHHHHHHHHHHH-cCCC-CCHHHHHH
Q 030985 53 VLLDAGGTLLQLAEPVEETYASIARK-YGLN-VDSADIKK 90 (168)
Q Consensus 53 VtFDA~GTLi~~r~pV~e~Ya~va~~-~Gi~-v~~e~l~~ 90 (168)
|.||.+|||+.......+.+.+++++ +|+. .+.+.+.+
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRR 40 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 57999999999998888899988887 5875 45554443
No 49
>PRK11590 hypothetical protein; Provisional
Probab=90.93 E-value=0.31 Score=39.35 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=24.6
Q ss_pred CccEEEEecCCccccccCCHHHHHHHHH-HHcCCCC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASIA-RKYGLNV 83 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~va-~~~Gi~v 83 (168)
.-|+|.||.+|||+ .+.......+.+ +++|+..
T Consensus 5 ~~k~~iFD~DGTL~--~~d~~~~~~~~~~~~~g~~~ 38 (211)
T PRK11590 5 ERRVVFFDLDGTLH--QQDMFGSFLRYLLRRQPLNL 38 (211)
T ss_pred cceEEEEecCCCCc--ccchHHHHHHHHHHhcchhh
Confidence 45799999999999 444555666666 8898773
No 50
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=90.06 E-value=0.39 Score=37.31 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=20.7
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~ 82 (168)
+|+|+||.+|||+..... +..+...+|..
T Consensus 4 ~k~viFD~DGTLid~~~~----~~~~~~~~~~~ 32 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVMSS----WEYLHRRLETC 32 (201)
T ss_pred ceEEEEeCCCCCcCCccH----HHHHHHHhCch
Confidence 789999999999987633 33344556654
No 51
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=89.85 E-value=0.17 Score=39.44 Aligned_cols=30 Identities=37% Similarity=0.367 Sum_probs=25.1
Q ss_pred ccEEEEecCCccccccCCH----HHHHHHHHHHc
Q 030985 50 YDAVLLDAGGTLLQLAEPV----EETYASIARKY 79 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV----~e~Ya~va~~~ 79 (168)
+++|+||.+|||..-+..+ .+...++++.+
T Consensus 1 i~~i~fDktGTLt~~~~~v~~~~~~~~~~~~~~~ 34 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSVAPPSNEAALAIAAAL 34 (215)
T ss_dssp ESEEEEECCTTTBESHHEEESCSHHHHHHHHHHH
T ss_pred CeEEEEecCCCcccCeEEEEeccHHHHHHHHHHh
Confidence 5789999999999998888 77777777655
No 52
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=89.02 E-value=0.33 Score=40.03 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=27.0
Q ss_pred CccEEEEecCCccccccCCHHHHHHHH---HHHcCCC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLN 82 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~ 82 (168)
.+|+|+||.+|||+.....+.+.=.++ +++.|+.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~ 38 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVK 38 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCE
Confidence 579999999999999888766544444 4688998
No 53
>PTZ00174 phosphomannomutase; Provisional
Probab=88.94 E-value=0.34 Score=40.14 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=32.2
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHH---HHHcCCCC------CHHHHHHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNV------DSADIKKGFR 93 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v------~~e~l~~~F~ 93 (168)
+.+|+|.+|++|||+.....+.+.-.++ +++.|+.+ +...+.+.+.
T Consensus 3 ~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 4589999999999998877665543333 46789983 4555555554
No 54
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=88.85 E-value=0.35 Score=39.64 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=24.7
Q ss_pred CccEEEEecCCccccccCCHHHHHHHH---HHHcCCCC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNV 83 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v 83 (168)
.+|+|++|++|||+.....+...-.++ +++.|+.+
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~ 39 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKV 39 (272)
T ss_pred CccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEE
Confidence 479999999999998765443322222 46889874
No 55
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=88.53 E-value=0.36 Score=39.80 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=25.3
Q ss_pred CccEEEEecCCccccccCCHHHHHHHH---HHHcCCCC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNV 83 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v 83 (168)
.+|+|++|++|||+.....+.+.-.++ +++.|+.+
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~ 39 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNV 39 (270)
T ss_pred ceEEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEE
Confidence 479999999999998766554322222 56889873
No 56
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=87.17 E-value=0.49 Score=39.27 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=24.8
Q ss_pred ccEEEEecCCccccccCCHHHHHHHH---HHHcCCCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNV 83 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v 83 (168)
+|+|++|++|||+.....+.+.-.++ +++.|+.+
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~ 38 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITL 38 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEE
Confidence 68999999999998766554433333 46789974
No 57
>PRK10976 putative hydrolase; Provisional
Probab=86.86 E-value=0.53 Score=38.77 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=24.7
Q ss_pred ccEEEEecCCccccccCCHHHHHHHH---HHHcCCCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNV 83 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v 83 (168)
+|+|++|++|||+.....+.+.-.++ +++.|+.+
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~ 38 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHF 38 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEE
Confidence 68999999999998765554433232 46889984
No 58
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=86.23 E-value=0.63 Score=37.24 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=24.3
Q ss_pred ccEEEEecCCccccccCCHH-HHHHHH--HHHcCCCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVE-ETYASI--ARKYGLNV 83 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~-e~Ya~v--a~~~Gi~v 83 (168)
+|+|++|.+|||+.....+. +.+..+ +++.|+.+
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~ 37 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPV 37 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEE
Confidence 58999999999998765443 344333 46789873
No 59
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.12 E-value=0.75 Score=38.47 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=23.3
Q ss_pred CccEEEEecCCccccccC-CHHHHHHHH--HHHcCCC
Q 030985 49 AYDAVLLDAGGTLLQLAE-PVEETYASI--ARKYGLN 82 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~-pV~e~Ya~v--a~~~Gi~ 82 (168)
.+|+|++|++|||+.... ........+ +++.|+.
T Consensus 3 ~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~ 39 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIP 39 (273)
T ss_pred cceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCE
Confidence 489999999999997433 233333333 4678987
No 60
>PLN02887 hydrolase family protein
Probab=85.86 E-value=0.67 Score=44.07 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=28.7
Q ss_pred ccCCccEEEEecCCccccccCCHHHHHHHH---HHHcCCCC
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPVEETYASI---ARKYGLNV 83 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v 83 (168)
..+.+|+|++|++|||+.....+.+.-.++ +++.|+.+
T Consensus 304 ~~~~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~ 344 (580)
T PLN02887 304 YKPKFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKV 344 (580)
T ss_pred hccCccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeE
Confidence 567899999999999998766554433333 57899984
No 61
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=85.38 E-value=0.85 Score=40.24 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=27.6
Q ss_pred ccCCccEEEEecCCccccccCCH----HHHHHHH--HHHcCCC
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPV----EETYASI--ARKYGLN 82 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV----~e~Ya~v--a~~~Gi~ 82 (168)
....+++|.||.+||||.-...| +.++..+ +++.|+.
T Consensus 122 ~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGik 164 (301)
T TIGR01684 122 VFEPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCI 164 (301)
T ss_pred ccccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCE
Confidence 45678999999999999887654 4455444 5788876
No 62
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=83.61 E-value=1.5 Score=37.07 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=31.9
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCC-CCHHHHHH----HHHHHhhccC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLN-VDSADIKK----GFRKAFAAPW 100 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~-v~~e~l~~----~F~~afk~~~ 100 (168)
+-+|.||.+|||+.-.+-. .+|.+ .+++++.. .|...|.+..
T Consensus 63 p~aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~~~w~~~~~~~ 109 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQVFWEKVNNGW 109 (237)
T ss_pred CeEEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcChHHHHHHHHhc
Confidence 4499999999999987544 28988 68876666 7777776554
No 63
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=82.99 E-value=1.2 Score=39.37 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=29.0
Q ss_pred ccCCccEEEEecCCccccccCCH----HHHHHHH--HHHcCCC
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPV----EETYASI--ARKYGLN 82 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV----~e~Ya~v--a~~~Gi~ 82 (168)
+..-+++|.||.+|||+...+.| +.++.-+ +++.|+.
T Consensus 124 ~~~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGik 166 (303)
T PHA03398 124 VWEIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCV 166 (303)
T ss_pred EeeeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCE
Confidence 55678999999999999988875 5566543 4688876
No 64
>PLN02423 phosphomannomutase
Probab=82.13 E-value=1.2 Score=37.10 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=16.9
Q ss_pred CCccEEE-EecCCccccccCCHHH
Q 030985 48 KAYDAVL-LDAGGTLLQLAEPVEE 70 (168)
Q Consensus 48 ~~~rlVt-FDA~GTLi~~r~pV~e 70 (168)
+++|+|+ ||++|||+.....+.+
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~~i~~ 27 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRKEATP 27 (245)
T ss_pred CccceEEEEeccCCCcCCCCcCCH
Confidence 4567555 9999999987765543
No 65
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=82.06 E-value=0.82 Score=36.37 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEecCCccccccCCHHHHHHHH---HHHcCCCC
Q 030985 53 VLLDAGGTLLQLAEPVEETYASI---ARKYGLNV 83 (168)
Q Consensus 53 VtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v 83 (168)
|+||.+|||+.....+..-..++ +++.|+.+
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~ 34 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPV 34 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEE
Confidence 58999999998766554333333 35699883
No 66
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=82.04 E-value=1.4 Score=38.83 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=22.9
Q ss_pred ccEEEEecCCccccccC-CHHHHH--HHHHHHcCCCC
Q 030985 50 YDAVLLDAGGTLLQLAE-PVEETY--ASIARKYGLNV 83 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~-pV~e~Y--a~va~~~Gi~v 83 (168)
+|+|++|++|||+.... ...... -+-+++.|+.+
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~v 37 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPL 37 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEE
Confidence 48999999999998443 222222 33357889983
No 67
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=81.62 E-value=1.7 Score=36.13 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=24.2
Q ss_pred ccEEEEecCCccccccCCHHHHHHHH--HHHcCCC
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASI--ARKYGLN 82 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~v--a~~~Gi~ 82 (168)
+|+|.||++|||+.-..++......+ .++.|++
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~ 35 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIP 35 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCe
Confidence 47899999999998777666555444 3566775
No 68
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=81.43 E-value=0.85 Score=33.20 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=18.5
Q ss_pred EEEecCCccccccCCHHHHHHHH--HHHcCCC
Q 030985 53 VLLDAGGTLLQLAEPVEETYASI--ARKYGLN 82 (168)
Q Consensus 53 VtFDA~GTLi~~r~pV~e~Ya~v--a~~~Gi~ 82 (168)
|.||++|||+.=..+++..-..+ .++.|.+
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~ 32 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKP 32 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSE
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCC
Confidence 68999999998555554433222 3566664
No 69
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.29 E-value=1.5 Score=35.01 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=21.8
Q ss_pred EEEEecCCccccccC-CHHHHH--HHHHHHcCCC
Q 030985 52 AVLLDAGGTLLQLAE-PVEETY--ASIARKYGLN 82 (168)
Q Consensus 52 lVtFDA~GTLi~~r~-pV~e~Y--a~va~~~Gi~ 82 (168)
+|++|++|||+.... .+.... -+.+++.|+.
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~ 34 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIP 34 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCe
Confidence 489999999998764 333333 3335788987
No 70
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=80.97 E-value=6 Score=33.92 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=31.7
Q ss_pred CcccCCccEEEEecCCccccccCCHHHHHH----HHH-HHcCCCCC
Q 030985 44 KSVKKAYDAVLLDAGGTLLQLAEPVEETYA----SIA-RKYGLNVD 84 (168)
Q Consensus 44 ~~~~~~~rlVtFDA~GTLi~~r~pV~e~Ya----~va-~~~Gi~v~ 84 (168)
++-.+++++++||.++||+.+..-+...-. +.. .++|+.-+
T Consensus 9 ~~~~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e 54 (244)
T KOG3109|consen 9 ISSGPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEE 54 (244)
T ss_pred ccCCccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChh
Confidence 444568999999999999999988887766 333 58888743
No 71
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=80.30 E-value=12 Score=28.16 Aligned_cols=19 Identities=32% Similarity=0.643 Sum_probs=15.8
Q ss_pred EEEEecCCccccccCCHHH
Q 030985 52 AVLLDAGGTLLQLAEPVEE 70 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e 70 (168)
+|.||.+|||+...+....
T Consensus 1 ~vlFDlDgtLv~~~~~~~~ 19 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEK 19 (183)
T ss_pred CeeeccCCceechHHHHHH
Confidence 4899999999999866554
No 72
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=80.26 E-value=1.1 Score=37.69 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=22.2
Q ss_pred CccEEEEecCCccccccCCHH---HHHHHHHHHcCCC
Q 030985 49 AYDAVLLDAGGTLLQLAEPVE---ETYASIARKYGLN 82 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r~pV~---e~Ya~va~~~Gi~ 82 (168)
|+++|.||++|||+.-..++. +...+ .++.|++
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~-L~~~g~~ 36 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPGAPELLDR-LARAGKA 36 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcCHHHHHHH-HHHCCCe
Confidence 689999999999996554443 33222 3566765
No 73
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=79.52 E-value=2.2 Score=35.78 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.2
Q ss_pred ccEEEEecCCccccc
Q 030985 50 YDAVLLDAGGTLLQL 64 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~ 64 (168)
+|+|.||++|||+.-
T Consensus 1 ~k~i~~D~DGtl~~~ 15 (257)
T TIGR01458 1 VKGVLLDISGVLYIS 15 (257)
T ss_pred CCEEEEeCCCeEEeC
Confidence 578999999999974
No 74
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=79.22 E-value=1 Score=34.87 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=13.1
Q ss_pred ccEEEEecCCcccc
Q 030985 50 YDAVLLDAGGTLLQ 63 (168)
Q Consensus 50 ~rlVtFDA~GTLi~ 63 (168)
+|+|+||++|||+.
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 68999999999998
No 75
>PLN02645 phosphoglycolate phosphatase
Probab=78.58 E-value=1.1 Score=38.57 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=18.2
Q ss_pred ccCCccEEEEecCCccccccCCHH
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPVE 69 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV~ 69 (168)
+..++++|+||++|||+.-..++.
T Consensus 24 ~~~~~~~~~~D~DGtl~~~~~~~~ 47 (311)
T PLN02645 24 LIDSVETFIFDCDGVIWKGDKLIE 47 (311)
T ss_pred HHHhCCEEEEeCcCCeEeCCccCc
Confidence 455789999999999997444333
No 76
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=77.63 E-value=2.1 Score=34.85 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.9
Q ss_pred cEEEEecCCccccccCCHHHHHHHHHHHcCC
Q 030985 51 DAVLLDAGGTLLQLAEPVEETYASIARKYGL 81 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi 81 (168)
++++||++|||+.. ...+++.+.|+
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~ 26 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGI 26 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCC
Confidence 67999999999954 35677788885
No 77
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=77.19 E-value=2.1 Score=35.24 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.2
Q ss_pred EEEEecCCccccccC-CHHHHH--HHHHHHcCCCC
Q 030985 52 AVLLDAGGTLLQLAE-PVEETY--ASIARKYGLNV 83 (168)
Q Consensus 52 lVtFDA~GTLi~~r~-pV~e~Y--a~va~~~Gi~v 83 (168)
+|++|.+|||+.... .+.... -+-+++.|+.+
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~ 35 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPV 35 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeE
Confidence 589999999998765 343333 33357889883
No 78
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=76.99 E-value=4.7 Score=33.94 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=30.2
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCC
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~ 82 (168)
..+-++.||++|||+....=..+.+..++++||-.
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~ 42 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKP 42 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCC
Confidence 44778999999999998888888899999999963
No 79
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=76.75 E-value=4.2 Score=30.99 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=13.0
Q ss_pred EEEEecCCccccccC
Q 030985 52 AVLLDAGGTLLQLAE 66 (168)
Q Consensus 52 lVtFDA~GTLi~~r~ 66 (168)
+|.||.+|||+....
T Consensus 3 ~iiFD~dgTL~~~~~ 17 (188)
T TIGR01489 3 VVVSDFDGTITLNDS 17 (188)
T ss_pred EEEEeCCCcccCCCc
Confidence 689999999998754
No 80
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=76.46 E-value=3.3 Score=40.42 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=24.7
Q ss_pred CCccEEEEecCCccccccCCH-HHHH--HHHHHHcCCCC
Q 030985 48 KAYDAVLLDAGGTLLQLAEPV-EETY--ASIARKYGLNV 83 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV-~e~Y--a~va~~~Gi~v 83 (168)
+..|+|++|.+|||+....-+ .... -+.+++.|+.+
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~ 452 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPL 452 (694)
T ss_pred ceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeE
Confidence 567899999999999865422 2222 33357889973
No 81
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=76.26 E-value=3.5 Score=33.92 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCccEEEEecCCccccccCCHHHHHHHHHHHcCCC
Q 030985 48 KAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~ 82 (168)
...+++.||.+|||+. .+.--.+++..|+.
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~ 32 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVG 32 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCH
Confidence 4578999999999999 44445555666654
No 82
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=75.35 E-value=3.6 Score=30.18 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.8
Q ss_pred cEEEEecCCcccc
Q 030985 51 DAVLLDAGGTLLQ 63 (168)
Q Consensus 51 rlVtFDA~GTLi~ 63 (168)
|+|.||.+|||..
T Consensus 1 k~~~~D~dgtL~~ 13 (132)
T TIGR01662 1 KGVVLDLDGTLTD 13 (132)
T ss_pred CEEEEeCCCceec
Confidence 6899999999994
No 83
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=75.05 E-value=2.6 Score=34.62 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEEEecCCccccccCCHHHHHHH--HHHHcCCC
Q 030985 52 AVLLDAGGTLLQLAEPVEETYAS--IARKYGLN 82 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e~Ya~--va~~~Gi~ 82 (168)
+|+||.+|||+.-...+.+.-.. -+++.|+.
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~ 33 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREALEELKDLGFP 33 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHHHHHHHCCCE
Confidence 58999999999843333333222 24678997
No 84
>PRK10444 UMP phosphatase; Provisional
Probab=74.50 E-value=2.3 Score=35.73 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=15.5
Q ss_pred ccEEEEecCCccccccCCHH
Q 030985 50 YDAVLLDAGGTLLQLAEPVE 69 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~ 69 (168)
||+|.||++|||+.-..++.
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p 20 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVP 20 (248)
T ss_pred CcEEEEeCCCceEeCCeeCc
Confidence 68899999999996544443
No 85
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=74.20 E-value=2.2 Score=33.36 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=27.7
Q ss_pred EEEecCCccccccCCHHHHHHHH---HHHcCCCC------CHHHHHHHHH
Q 030985 53 VLLDAGGTLLQLAEPVEETYASI---ARKYGLNV------DSADIKKGFR 93 (168)
Q Consensus 53 VtFDA~GTLi~~r~pV~e~Ya~v---a~~~Gi~v------~~e~l~~~F~ 93 (168)
|++|.+|||+.....+.+.-.++ +++.|+.+ +...+.+-+.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccc
Confidence 78999999999776665544333 46788873 3555555555
No 86
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=74.08 E-value=3.1 Score=35.89 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=29.4
Q ss_pred cCCccEEEEecCCccccc---cCCHHHHHHHHHHHcCCCC
Q 030985 47 KKAYDAVLLDAGGTLLQL---AEPVEETYASIARKYGLNV 83 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~---r~pV~e~Ya~va~~~Gi~v 83 (168)
.+.+++||.|.+|||+.+ .+|.+.+|.+ +.+.|+++
T Consensus 4 ~~~~~lIFtDlD~TLl~~~ye~~pA~pv~~e-l~d~G~~V 42 (274)
T COG3769 4 IQMPLLIFTDLDGTLLPHSYEWQPAAPVLLE-LKDAGVPV 42 (274)
T ss_pred cccceEEEEcccCcccCCCCCCCccchHHHH-HHHcCCeE
Confidence 356899999999999983 3677888888 58899984
No 87
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=73.83 E-value=5.4 Score=32.22 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=38.1
Q ss_pred CcccCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCH
Q 030985 44 KSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDS 85 (168)
Q Consensus 44 ~~~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~ 85 (168)
......+++-+.|..|.=+..++.||+.-.++|.++||+++-
T Consensus 38 ~~~~e~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleG 79 (159)
T KOG3309|consen 38 PRKVEDIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEG 79 (159)
T ss_pred CCCCceEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccc
Confidence 555667999999999999999999999999999999998764
No 88
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=73.63 E-value=3.3 Score=32.41 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEecCCcccccc---------------CCHHHHHHHHHHHcCCC
Q 030985 52 AVLLDAGGTLLQLA---------------EPVEETYASIARKYGLN 82 (168)
Q Consensus 52 lVtFDA~GTLi~~r---------------~pV~e~Ya~va~~~Gi~ 82 (168)
+|.+|++|||+... +.+.+.|.++ ++.|+.
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l-~~~G~~ 45 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDI-QNNGYK 45 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHH-HHcCCe
Confidence 58999999999654 3445555543 566776
No 89
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=72.99 E-value=2.2 Score=33.56 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=12.6
Q ss_pred cEEEEecCCccccccC
Q 030985 51 DAVLLDAGGTLLQLAE 66 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~ 66 (168)
|+.+||.+|||+.++.
T Consensus 1 Kia~fD~DgTLi~~~s 16 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS 16 (159)
T ss_dssp SEEEE-SCTTTEE-ST
T ss_pred CEEEEeCCCCccCCCC
Confidence 6899999999999875
No 90
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=71.76 E-value=4.4 Score=31.11 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=13.0
Q ss_pred ccEEEEecCCccccc
Q 030985 50 YDAVLLDAGGTLLQL 64 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~ 64 (168)
.|+|.||++|||+.-
T Consensus 1 ~K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 1 MKRLVMDLDNTITLT 15 (126)
T ss_pred CCEEEEeCCCCcccC
Confidence 378999999999875
No 91
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=71.55 E-value=4.5 Score=34.18 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=28.4
Q ss_pred cccCCccEEEEecCCccccccC---------CHHHHHHHHHHHcCCCC------CHHHHHHHH
Q 030985 45 SVKKAYDAVLLDAGGTLLQLAE---------PVEETYASIARKYGLNV------DSADIKKGF 92 (168)
Q Consensus 45 ~~~~~~rlVtFDA~GTLi~~r~---------pV~e~Ya~va~~~Gi~v------~~e~l~~~F 92 (168)
|.+..-++|+||.+|||+.... ..-+...++++..|+.+ +.+.+.+.+
T Consensus 9 ~~~~~~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~ 71 (266)
T PRK10187 9 PELSANYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALA 71 (266)
T ss_pred CCCCCCEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhc
Confidence 3444558999999999997521 12223333333478763 356665554
No 92
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=71.53 E-value=2.1 Score=33.96 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=14.6
Q ss_pred CccEEEEecCCccccc
Q 030985 49 AYDAVLLDAGGTLLQL 64 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~ 64 (168)
.+|+|.||++|||+..
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4999999999999975
No 93
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=70.53 E-value=3.3 Score=33.88 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEecCCccccccCCHHH-HH--HHHHHHcCCC
Q 030985 52 AVLLDAGGTLLQLAEPVEE-TY--ASIARKYGLN 82 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e-~Y--a~va~~~Gi~ 82 (168)
+|++|++|||+.....+.+ .. -+-+++.|+.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~ 34 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIK 34 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCe
Confidence 5899999999987655532 22 2225678987
No 94
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=66.61 E-value=4.3 Score=32.68 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=18.0
Q ss_pred cEEEEecCCccccccCCHHHHHHHHHHHcC
Q 030985 51 DAVLLDAGGTLLQLAEPVEETYASIARKYG 80 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~pV~e~Ya~va~~~G 80 (168)
++|.||.+|||+.-..-. .+++++|
T Consensus 4 ~~vifDfDgTi~~~d~~~-----~~~~~~~ 28 (219)
T PRK09552 4 IQIFCDFDGTITNNDNII-----AIMKKFA 28 (219)
T ss_pred cEEEEcCCCCCCcchhhH-----HHHHHhC
Confidence 389999999999877422 2555665
No 95
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=63.47 E-value=5 Score=31.54 Aligned_cols=43 Identities=30% Similarity=0.488 Sum_probs=26.2
Q ss_pred EEEEecCCcccccc-CCH-HHHHHHH--HHHcCCCC------CHHHHHHHHHH
Q 030985 52 AVLLDAGGTLLQLA-EPV-EETYASI--ARKYGLNV------DSADIKKGFRK 94 (168)
Q Consensus 52 lVtFDA~GTLi~~r-~pV-~e~Ya~v--a~~~Gi~v------~~e~l~~~F~~ 94 (168)
+|+||.+|||+.+. ..+ .+....+ +++.|+.+ +...+.+-++.
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 58999999999875 322 3333333 35777652 34556655554
No 96
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=62.75 E-value=7.8 Score=30.23 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=12.1
Q ss_pred EEEEecCCcccccc
Q 030985 52 AVLLDAGGTLLQLA 65 (168)
Q Consensus 52 lVtFDA~GTLi~~r 65 (168)
+++||++|||+.-.
T Consensus 1 ~a~FD~DgTL~~~~ 14 (202)
T TIGR01490 1 LAFFDFDGTLTAKD 14 (202)
T ss_pred CeEEccCCCCCCCc
Confidence 47999999999964
No 97
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=61.46 E-value=8.3 Score=26.73 Aligned_cols=30 Identities=37% Similarity=0.541 Sum_probs=19.9
Q ss_pred EEEEecCCccccccC------------CHHHHHHHHHHHcCCC
Q 030985 52 AVLLDAGGTLLQLAE------------PVEETYASIARKYGLN 82 (168)
Q Consensus 52 lVtFDA~GTLi~~r~------------pV~e~Ya~va~~~Gi~ 82 (168)
++.||.+|||+.... .+.+...+ +++.|+.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~g~~ 42 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKE-LKEKGIK 42 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHH-HHHCCCe
Confidence 479999999987663 34444433 4556776
No 98
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=59.07 E-value=9.6 Score=27.64 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=28.2
Q ss_pred ccCCHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhccC
Q 030985 64 LAEPVEETYASIARKYGLN-VDSADIKKGFRKAFAAPW 100 (168)
Q Consensus 64 ~r~pV~e~Ya~va~~~Gi~-v~~e~l~~~F~~afk~~~ 100 (168)
||..+-+.|...++++++. +++....+-++.+|-.+.
T Consensus 25 pR~~lY~~Y~~~C~~~~~~pln~AsFGKlir~vFP~l~ 62 (85)
T PF02257_consen 25 PRSDLYAHYLSFCEKNGIKPLNAASFGKLIRQVFPNLK 62 (85)
T ss_dssp EHHHHHHHHHHHHHHTT-----HHHHHHHHHHHSTT-E
T ss_pred chHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCc
Confidence 6677889999999999998 999999999999988654
No 99
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=58.31 E-value=4.6 Score=30.62 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.7
Q ss_pred EEEEecCCccccccC
Q 030985 52 AVLLDAGGTLLQLAE 66 (168)
Q Consensus 52 lVtFDA~GTLi~~r~ 66 (168)
+++||.+|||+.-..
T Consensus 1 l~~fD~DgTl~~~~s 15 (177)
T TIGR01488 1 LAIFDFDGTLTRQDS 15 (177)
T ss_pred CEEecCccccccchh
Confidence 489999999998664
No 100
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=58.06 E-value=4.8 Score=34.15 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.9
Q ss_pred cEEEEecCCccccccCCHHH
Q 030985 51 DAVLLDAGGTLLQLAEPVEE 70 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~pV~e 70 (168)
-+|.||+++||+.++.+++.
T Consensus 21 tLvvfDiDdTLi~~~~~lg~ 40 (252)
T PF11019_consen 21 TLVVFDIDDTLITPKQPLGS 40 (252)
T ss_pred eEEEEEcchhhhcCccccCC
Confidence 47999999999999966654
No 101
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=57.91 E-value=13 Score=28.90 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=11.9
Q ss_pred cEEEEecCCcccc
Q 030985 51 DAVLLDAGGTLLQ 63 (168)
Q Consensus 51 rlVtFDA~GTLi~ 63 (168)
|+|+||-+|||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 7899999999994
No 102
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=57.43 E-value=7.7 Score=31.81 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=24.3
Q ss_pred ccCCccEEEEecCCccccccCCH---HHHHHHHHHHcCCC
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPV---EETYASIARKYGLN 82 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV---~e~Ya~va~~~Gi~ 82 (168)
+..++++|.||++|||+.-..+. .+.-.+ .++.|++
T Consensus 4 ~~~~~~~~~~D~dG~l~~~~~~~pga~e~L~~-L~~~G~~ 42 (242)
T TIGR01459 4 LINDYDVFLLDLWGVIIDGNHTYPGAVQNLNK-IIAQGKP 42 (242)
T ss_pred hhhcCCEEEEecccccccCCccCccHHHHHHH-HHHCCCE
Confidence 45679999999999999654443 333333 4566775
No 103
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=57.01 E-value=5.8 Score=36.41 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=23.8
Q ss_pred CccEEEEecCCcccc------ccCCHHHHHHHHHHHcCCC
Q 030985 49 AYDAVLLDAGGTLLQ------LAEPVEETYASIARKYGLN 82 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~------~r~pV~e~Ya~va~~~Gi~ 82 (168)
.+++||||.++||+. +..||-...-+.. +.|+.
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL-~~gv~ 184 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLL-RRGVK 184 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHH-hcCCe
Confidence 799999999999985 4566665555543 45554
No 104
>PRK06769 hypothetical protein; Validated
Probab=56.81 E-value=14 Score=28.94 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.0
Q ss_pred CccEEEEecCCcccc
Q 030985 49 AYDAVLLDAGGTLLQ 63 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~ 63 (168)
.+|+|+||.+|||-.
T Consensus 3 ~~~~~~~d~d~~~~~ 17 (173)
T PRK06769 3 NIQAIFIDRDGTIGG 17 (173)
T ss_pred CCcEEEEeCCCcccC
Confidence 489999999999953
No 105
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=56.28 E-value=18 Score=31.32 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=27.6
Q ss_pred ccCCccEEEEecCCccccccCCHHHHHHHH--HHHcCCC
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPVEETYASI--ARKYGLN 82 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~v--a~~~Gi~ 82 (168)
+..+++.++||++|||+.=..+++..=.-+ .++.|++
T Consensus 4 ~~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~ 42 (269)
T COG0647 4 VMDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKP 42 (269)
T ss_pred hhhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCe
Confidence 456688899999999998777776644333 4677776
No 106
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=56.21 E-value=9.6 Score=32.52 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.8
Q ss_pred cEEEEecCCccccccCCHHHHHHHHHHH
Q 030985 51 DAVLLDAGGTLLQLAEPVEETYASIARK 78 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~pV~e~Ya~va~~ 78 (168)
-++.||+.|||--+|..+..-..+..++
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHH
Confidence 3889999999999999887766666544
No 107
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=56.08 E-value=13 Score=35.96 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=29.0
Q ss_pred cCCccEEEEecCCcccccc------CCHHHH---HHHHHHHcCCCC------CHHHHHHHHH
Q 030985 47 KKAYDAVLLDAGGTLLQLA------EPVEET---YASIARKYGLNV------DSADIKKGFR 93 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r------~pV~e~---Ya~va~~~Gi~v------~~e~l~~~F~ 93 (168)
..+.|+|+||.+|||+... .+..+. -.++++.-|+.+ +.+.+++-|.
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred hccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 3567999999999999632 122333 344444357763 4667766654
No 108
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=55.79 E-value=12 Score=33.73 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=30.1
Q ss_pred cCCccEEEEecCCc-cccccCCHHHHHHHHH-----------HHcCCC
Q 030985 47 KKAYDAVLLDAGGT-LLQLAEPVEETYASIA-----------RKYGLN 82 (168)
Q Consensus 47 ~~~~rlVtFDA~GT-Li~~r~pV~e~Ya~va-----------~~~Gi~ 82 (168)
.+.+.+||||++++ -.++..||-+.|..+. ++||.+
T Consensus 119 qPnppvVtfDVFD~p~pglpkpire~~~dVmedP~eWArk~Vk~fgad 166 (403)
T COG2069 119 QPNPPVVTFDVFDIPRPGLPKPIREHYDDVMEDPGEWARKCVKKFGAD 166 (403)
T ss_pred CCCCCeeEEEeccCCCCCCchhHHHHHHHHhhCHHHHHHHHHHHhCCc
Confidence 35678999999999 8899999999997765 478875
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=54.96 E-value=14 Score=36.84 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCccEEEEecCCcccccc-------CCHHHHHHHHHHHcCCCC------CHHHHHHHHHHH
Q 030985 48 KAYDAVLLDAGGTLLQLA-------EPVEETYASIARKYGLNV------DSADIKKGFRKA 95 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r-------~pV~e~Ya~va~~~Gi~v------~~e~l~~~F~~a 95 (168)
...|+|++|.+|||+... +-+.+...+++++-|+.+ +.++|++-|...
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~ 654 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPC 654 (854)
T ss_pred hcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCC
Confidence 457999999999999433 224456666667777762 567888888543
No 110
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=53.34 E-value=8.4 Score=28.78 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=13.0
Q ss_pred cEEEEecCCccccc
Q 030985 51 DAVLLDAGGTLLQL 64 (168)
Q Consensus 51 rlVtFDA~GTLi~~ 64 (168)
|+|.||.+|||...
T Consensus 1 kli~~DlD~Tl~~~ 14 (128)
T TIGR01681 1 KVIVFDLDNTLWTG 14 (128)
T ss_pred CEEEEeCCCCCCCC
Confidence 68999999999987
No 111
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=51.28 E-value=8.8 Score=29.30 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=12.0
Q ss_pred EEEecCCcccccc
Q 030985 53 VLLDAGGTLLQLA 65 (168)
Q Consensus 53 VtFDA~GTLi~~r 65 (168)
|+||.+|||+.-.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999887
No 112
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=50.45 E-value=9.7 Score=29.67 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.9
Q ss_pred ccEEEEecCCccccc
Q 030985 50 YDAVLLDAGGTLLQL 64 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~ 64 (168)
.|+|+||-+|||+.-
T Consensus 3 ~~~~~~d~~~t~~~~ 17 (181)
T PRK08942 3 MKAIFLDRDGVINVD 17 (181)
T ss_pred ccEEEEECCCCcccC
Confidence 689999999998654
No 113
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=50.15 E-value=9.1 Score=31.20 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.3
Q ss_pred CccEEEEecCCcccccc
Q 030985 49 AYDAVLLDAGGTLLQLA 65 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r 65 (168)
.-|++.||.+|||.+--
T Consensus 4 ~~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQD 20 (210)
T ss_pred cCcEEEEcCCCCCccCc
Confidence 46889999999999754
No 114
>PRK14300 chaperone protein DnaJ; Provisional
Probab=49.88 E-value=36 Score=30.34 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=38.3
Q ss_pred HcCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 78 KYGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 78 ~~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
-+||. +++++|+++|++.=+..+|.... .....+.| ..|.+.+.+..+..-+.+|+.|+.
T Consensus 8 iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f-~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 8 ILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKF-KEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHH-HHHHHHHHHhhhHhHhhHHHhccc
Confidence 35665 78889999999888887776432 22344455 445555555555566666766653
No 115
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=49.82 E-value=32 Score=30.22 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=39.0
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. ++.++|+++|++.-+..+|.... .....+.+. .|.+.+.+..+..-..+|+.|+.
T Consensus 6 Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~-~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 6 LGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFK-EINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHH-HHHHHHHHhhChHHHHhhhhccc
Confidence 5665 78899999999998887776533 223444454 45566665544556777877764
No 116
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=49.80 E-value=9.7 Score=28.84 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.6
Q ss_pred cEEEEecCCccccccC
Q 030985 51 DAVLLDAGGTLLQLAE 66 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~ 66 (168)
++++||.+|||+.-+.
T Consensus 1 ~~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 1 PALFLDRDGVINEDTV 16 (147)
T ss_pred CeEEEeCCCceeccCC
Confidence 4799999999998764
No 117
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=49.70 E-value=21 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=35.2
Q ss_pred ccCCccEEEEecCCccccccCCH----HHHHHHH--HHHcCCC------CCHHHHHHHHHHH
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPV----EETYASI--ARKYGLN------VDSADIKKGFRKA 95 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV----~e~Ya~v--a~~~Gi~------v~~e~l~~~F~~a 95 (168)
....+.+|.||++.|||+-.+++ +.+|..+ .++.|.- -+.+-+..+.++.
T Consensus 118 ~~~~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~ 179 (297)
T PF05152_consen 118 VWEPPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL 179 (297)
T ss_pred cCCCCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh
Confidence 56778899999999999765433 6666655 4677853 3666666666554
No 118
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=49.23 E-value=11 Score=29.55 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCccEEEEecCCcccccc
Q 030985 48 KAYDAVLLDAGGTLLQLA 65 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r 65 (168)
+..|+++||.+|||+...
T Consensus 11 ~~~k~~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTR 28 (166)
T ss_pred CcCcEEEEeCCCceEecC
Confidence 356899999999999743
No 119
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=48.87 E-value=9.1 Score=31.24 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.5
Q ss_pred ccCCccEEEEecCCcccc
Q 030985 46 VKKAYDAVLLDAGGTLLQ 63 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~ 63 (168)
...++|++.||++|||-.
T Consensus 4 ra~~IkLli~DVDGvLTD 21 (170)
T COG1778 4 RAKNIKLLILDVDGVLTD 21 (170)
T ss_pred hhhhceEEEEeccceeec
Confidence 457899999999999964
No 120
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=47.51 E-value=18 Score=29.32 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=26.7
Q ss_pred EEEEecCCccccccCCHHHHHHHHH--HHcCCCC------CHHHHHHHHHH
Q 030985 52 AVLLDAGGTLLQLAEPVEETYASIA--RKYGLNV------DSADIKKGFRK 94 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e~Ya~va--~~~Gi~v------~~e~l~~~F~~ 94 (168)
+|++|.+|||+.....+.+ +..+. ++.|+.+ +..++.+-+..
T Consensus 1 li~~DlDgTLl~~~~~~~~-~~~~~~~~~~gi~~viaTGR~~~~v~~~~~~ 50 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLAS-FVELLRGSGDAVGFGIATGRSVESAKSRYAK 50 (236)
T ss_pred CeEEeccccccCCHHHHHH-HHHHHHhcCCCceEEEEeCCCHHHHHHHHHh
Confidence 5889999999985555544 22333 4567762 45666666544
No 121
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=47.28 E-value=11 Score=30.08 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.5
Q ss_pred cCCccEEEEecCCccccc
Q 030985 47 KKAYDAVLLDAGGTLLQL 64 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~ 64 (168)
..++|++.||++|+|-.-
T Consensus 4 ~~~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 4 AKNIKLVILDVDGVMTDG 21 (169)
T ss_pred cccCeEEEEeCceeeECC
Confidence 456999999999999865
No 122
>PRK14280 chaperone protein DnaJ; Provisional
Probab=45.42 E-value=41 Score=30.03 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=38.2
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. ++.++|+++|++.-+..+|..... ....+=|. -|.+.+.+..+..-+.+|++|+.
T Consensus 10 Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~-~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 10 LGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFK-EISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHH-HHHHHHHHhccHhHHHHHHhcCc
Confidence 5665 788889999998888777764322 23334443 45566665555566777777753
No 123
>PRK14293 chaperone protein DnaJ; Provisional
Probab=45.14 E-value=34 Score=30.54 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=38.6
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. +++++|+++|++.=+..+|.... .....+-| ..|.+.+.+..+..-+.+|+.|+.
T Consensus 9 Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f-~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 9 LGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRF-KEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHH-HHHHHHHHHHhchHHHHHHhhccc
Confidence 4555 78889999999888877776422 22233333 456677766655677777887763
No 124
>PRK14281 chaperone protein DnaJ; Provisional
Probab=44.60 E-value=39 Score=30.44 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=38.8
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. ++.++|+++|++.=+..+|....-.....+.+ ..|.+.+.+..+..-+.+|+.|+.
T Consensus 9 Lgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f-~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 9 LGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHF-KEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHH-HHHHHHHHHhhhhhhhhhhhhccc
Confidence 4565 77888999998888877776533222233444 456677766555556777777754
No 125
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=44.56 E-value=13 Score=29.85 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=11.6
Q ss_pred CccEEEEecCCcccccc
Q 030985 49 AYDAVLLDAGGTLLQLA 65 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r 65 (168)
-+|+|.||+++||-.+.
T Consensus 2 ~PklvvFDLD~TlW~~~ 18 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPW 18 (169)
T ss_dssp S-SEEEE-STTTSSSS-
T ss_pred CCcEEEEcCcCCCCchh
Confidence 47899999999997543
No 126
>PRK10767 chaperone protein DnaJ; Provisional
Probab=42.86 E-value=47 Score=29.52 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=38.3
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. ++.++|+++|++.-+..+|....-.....+.+. .|.+.+.+..+..-..+|++|+.
T Consensus 10 Lgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 10 LGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFK-EIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHH-HHHHHHHHhcchhhhhHhhhccc
Confidence 5665 778899999988877777764221112344554 56666665555566777887753
No 127
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=42.80 E-value=15 Score=27.85 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=12.2
Q ss_pred cEEEEecCCccccccC
Q 030985 51 DAVLLDAGGTLLQLAE 66 (168)
Q Consensus 51 rlVtFDA~GTLi~~r~ 66 (168)
|+|.||..|||++-..
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 5799999999997553
No 128
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=42.37 E-value=16 Score=29.41 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=12.5
Q ss_pred ccEEEEecCCcccc
Q 030985 50 YDAVLLDAGGTLLQ 63 (168)
Q Consensus 50 ~rlVtFDA~GTLi~ 63 (168)
+|+|.||+++||..
T Consensus 2 ~~~~~~~~~~~~~~ 15 (174)
T TIGR01685 2 PRVIVFDLDGTLWD 15 (174)
T ss_pred CcEEEEeCCCCCcC
Confidence 68999999999875
No 129
>PRK14277 chaperone protein DnaJ; Provisional
Probab=42.30 E-value=48 Score=29.75 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=39.9
Q ss_pred HcCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 78 KYGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 78 ~~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
-.||. ++.++|+++|++.-+..+|...+-.....+-|. -|.+.+.+..+..-+.+|+.|+.
T Consensus 10 ~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 10 ILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFK-EINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHH-HHHHHHHHhCCHHHHHHHHhhcc
Confidence 35776 788999999999888887765321223344443 55666665555566777777764
No 130
>PRK14289 chaperone protein DnaJ; Provisional
Probab=42.06 E-value=53 Score=29.38 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=39.6
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. .+.++|+++|++.=+..+|...+-.....+-|. .|.+.+.+..+.....+|+.|+.
T Consensus 11 Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~-~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 11 LGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFK-EAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHH-HHHHHHHHhcCHHHHHHHHHhcc
Confidence 4666 788999999998888777765432223344554 55566665545567778888753
No 131
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=41.90 E-value=21 Score=33.80 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.7
Q ss_pred cccCCccEEEEecCCcccccc
Q 030985 45 SVKKAYDAVLLDAGGTLLQLA 65 (168)
Q Consensus 45 ~~~~~~rlVtFDA~GTLi~~r 65 (168)
...++.|+++||.+|||+..+
T Consensus 163 ~~~~~~Kia~fD~DGTLi~t~ 183 (526)
T TIGR01663 163 GVKGQEKIAGFDLDGTIIKTK 183 (526)
T ss_pred CcCccCcEEEEECCCCccccC
Confidence 356778999999999999754
No 132
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=41.48 E-value=14 Score=30.33 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=12.9
Q ss_pred EEEecCCccccccCCHHH
Q 030985 53 VLLDAGGTLLQLAEPVEE 70 (168)
Q Consensus 53 VtFDA~GTLi~~r~pV~e 70 (168)
|.||++|||+.-..++..
T Consensus 1 ~lfD~DGvL~~~~~~~~~ 18 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPG 18 (236)
T ss_pred CEEeCcCccCcCCccCcC
Confidence 578999999975554443
No 133
>PF00709 Adenylsucc_synt: Adenylosuccinate synthetase; InterPro: IPR001114 Adenylosuccinate synthetase (6.3.4.4 from EC) plays an important role in purine biosynthesis, by catalysing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterised from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present: one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins []. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein [].; GO: 0000287 magnesium ion binding, 0004019 adenylosuccinate synthase activity, 0005525 GTP binding, 0006164 purine nucleotide biosynthetic process, 0005737 cytoplasm; PDB: 3HID_A 1DJ3_B 2D7U_A 1DJ2_A 1P9B_A 1LON_A 1MF0_A 1LOO_A 1LNY_B 2DGN_A ....
Probab=41.05 E-value=57 Score=30.09 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=52.9
Q ss_pred ccCCHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCc---hHHHHHHHHh
Q 030985 64 LAEPVEETYASIARKYGLN----VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTN---DDYFEEVYEV 136 (168)
Q Consensus 64 ~r~pV~e~Ya~va~~~Gi~----v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~---~~l~~eLy~~ 136 (168)
...-++..|++-+.+.||. ++++.+.+.+++..+ ++.+++.+.++... +++++++.++
T Consensus 127 TgrGIGp~y~dk~~R~gir~~DL~~~~~l~~kl~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (421)
T PF00709_consen 127 TGRGIGPAYADKVARRGIRVGDLLDPEVLREKLKQILD---------------EKNRLLEKLYGEEPLDVEEILEEYLEY 191 (421)
T ss_dssp SSTTHHHHHHHHHTT-S-BGGGGGSHHHHHHHHHHHHH---------------HHHHHHHHCSTT-HHHHHHHHHHHHHH
T ss_pred cCCChHHHhhhhccCCCcEeeecCCHHHHHHHHHHHHH---------------HHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 4567899999988888997 478888888887765 55666655554332 4555555554
Q ss_pred hCC-CCceeeccHHHHHhhhhhcCCcc
Q 030985 137 SFY-ETYVLTFLIPKLSLQVKECSGLL 162 (168)
Q Consensus 137 F~s-e~w~lyDViP~L~~~~k~~~g~~ 162 (168)
... .++ +-|+...|...+++.+.+|
T Consensus 192 ~~~l~~~-v~d~~~~l~~al~~gk~iL 217 (421)
T PF00709_consen 192 AERLKPY-VCDTVEFLNEALKEGKKIL 217 (421)
T ss_dssp HHHHGGC-EE-HHHHHHHHHHTT--EE
T ss_pred HHHhhCc-eecHHHHHHHHHHcCCcEE
Confidence 443 443 2299999998888877755
No 134
>PRK14297 chaperone protein DnaJ; Provisional
Probab=40.72 E-value=34 Score=30.55 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=34.5
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. .+.++|+++|++.=++.+|....-.....+.|. .|.+.+.+..+..-+.+|+.|+.
T Consensus 10 Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 10 LGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFK-EINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHH-HHHHHHHHhcCHhhhCchhhcCc
Confidence 4665 677788888877766666654221223445554 35555554444455666666643
No 135
>PF08769 Spo0A_C: Sporulation initiation factor Spo0A C terminal; InterPro: IPR014879 The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005509 calcium ion binding, 0006355 regulation of transcription, DNA-dependent, 0042173 regulation of sporulation resulting in formation of a cellular spore, 0005737 cytoplasm; PDB: 1FC3_C 1LQ1_D.
Probab=40.13 E-value=30 Score=25.76 Aligned_cols=29 Identities=34% Similarity=0.811 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhccC
Q 030985 70 ETYASIARKYGLNVDSADIKKGFRKAFAAPW 100 (168)
Q Consensus 70 e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~~ 100 (168)
..|-.||++|| .++..|+++.|.|....|
T Consensus 41 ~LYp~IA~k~~--TT~s~VERaIR~aI~~~w 69 (106)
T PF08769_consen 41 ELYPDIAKKYG--TTPSRVERAIRHAIEVAW 69 (106)
T ss_dssp THHHHHHHHTT--S-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Confidence 58999999998 667777888777777543
No 136
>PLN02811 hydrolase
Probab=40.00 E-value=30 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=22.7
Q ss_pred cCCccccccCCHHHHHHHHHHHcCCCCCHH
Q 030985 57 AGGTLLQLAEPVEETYASIARKYGLNVDSA 86 (168)
Q Consensus 57 A~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e 86 (168)
.+|||+.-..-..+...++.+++|++++.+
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~ 30 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWS 30 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHH
Confidence 368998877666777778888899887644
No 137
>PRK14292 chaperone protein DnaJ; Provisional
Probab=39.98 E-value=39 Score=30.00 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=32.3
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSF 138 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~ 138 (168)
.||. .++++|+++|++.-+..+|.... .....+-| ..|.+.+.+..+..-+.+|+.|+
T Consensus 8 Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~-~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 8 LGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKF-AQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHH-HHHHHHHHHhcchhhhhhHhhcC
Confidence 4555 66777888887777766665422 11222333 44555555444445566666655
No 138
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=39.85 E-value=28 Score=30.07 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=14.1
Q ss_pred EEEEecCCccccccCCHHH
Q 030985 52 AVLLDAGGTLLQLAEPVEE 70 (168)
Q Consensus 52 lVtFDA~GTLi~~r~pV~e 70 (168)
+|.||++|||++-..++..
T Consensus 2 ~~ifD~DGvL~~g~~~i~g 20 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAG 20 (321)
T ss_pred EEEEeCcCceECCccccHH
Confidence 5899999999965554443
No 139
>PRK14286 chaperone protein DnaJ; Provisional
Probab=39.60 E-value=58 Score=29.11 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=37.4
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. .+.++|+++|++.=+..+|...+-.....+.|. .|.+.+.+..+.--.++|++|+.
T Consensus 10 Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 10 LGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFK-EATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHH-HHHHHHHHhccHHHHHHHHHhCc
Confidence 5676 778889998888877777764221223444554 45566665555556677777753
No 140
>PRK14288 chaperone protein DnaJ; Provisional
Probab=39.58 E-value=68 Score=28.63 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=37.6
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. +++++|+++|++-=+..+|..-+-.....+-+ ..|.+.+.+..+.--+.+|++|+.
T Consensus 9 Lgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f-~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 9 LEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKF-KLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHH-HHHHHHHHHhccHHHHHHHHHhcc
Confidence 5666 78888999888876666666421112233333 346677766555566678887764
No 141
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=39.21 E-value=42 Score=20.05 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=18.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhh
Q 030985 72 YASIARKYGLNVDSADIKKGFRKAFA 97 (168)
Q Consensus 72 Ya~va~~~Gi~v~~e~l~~~F~~afk 97 (168)
-.++|...|+ ++..+.+.|++.+-
T Consensus 11 l~~iA~~~g~--S~~~f~r~Fk~~~g 34 (42)
T PF00165_consen 11 LEDIAEQAGF--SPSYFSRLFKKETG 34 (42)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHHTS
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHC
Confidence 3578999998 88888888887754
No 142
>PRK14276 chaperone protein DnaJ; Provisional
Probab=38.64 E-value=57 Score=29.21 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=37.4
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. .+.++|+++|++.=+..+|.... .....+=+ ..|.+.+.+..+.--+.+|+.|+.
T Consensus 10 Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f-~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 10 LGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKY-KEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHH-HHHHHHHHHhcCHhhhhhHhhcCC
Confidence 5665 78889999998888777776432 22223333 456666665555556777777763
No 143
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=38.44 E-value=34 Score=27.95 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=19.8
Q ss_pred EEEEecCCcccc---ccCCHHHHHHHH---HHHcCCC
Q 030985 52 AVLLDAGGTLLQ---LAEPVEETYASI---ARKYGLN 82 (168)
Q Consensus 52 lVtFDA~GTLi~---~r~pV~e~Ya~v---a~~~Gi~ 82 (168)
+|+.|.+|||+. ....+.+...++ +.+.|+.
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~ 39 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSL 39 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCce
Confidence 789999999995 444443332222 4567765
No 144
>TIGR00184 purA adenylosuccinate synthase. Alternate name IMP--aspartate ligase.
Probab=38.40 E-value=1.4e+02 Score=27.83 Aligned_cols=84 Identities=10% Similarity=0.122 Sum_probs=49.8
Q ss_pred cccCCHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCC---CchHHHHHHHH
Q 030985 63 QLAEPVEETYASIARKYGLN----VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGC---TNDDYFEEVYE 135 (168)
Q Consensus 63 ~~r~pV~e~Ya~va~~~Gi~----v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~---~~~~l~~eLy~ 135 (168)
..+.-++..|+.-+.+.||. ++++.+.+..+..... -..++.+.++. ..+++++++.+
T Consensus 124 TT~rGIGPaY~dK~~R~giR~~Dl~~~~~~~~kl~~~~~~---------------~n~~~~~~y~~~~~~~~~~~~~~~~ 188 (425)
T TIGR00184 124 TTGKGIGPAYEDKVARSGLRVGDLLDDEAFAEKAKNILEY---------------LNEQLVKYYKDEGVDYEKKLDEYMK 188 (425)
T ss_pred CCCCCcHHHHHHHhhccccchhhhcCHHHHHHHHHHHHHH---------------HHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 45788999999999999998 5677777777766552 22333333331 11344555444
Q ss_pred hhCC-CCceeeccHHHHHhhhhhcCCcc
Q 030985 136 VSFY-ETYVLTFLIPKLSLQVKECSGLL 162 (168)
Q Consensus 136 ~F~s-e~w~lyDViP~L~~~~k~~~g~~ 162 (168)
.... .+| +.|+...|...+++.+-+|
T Consensus 189 ~~~~l~p~-v~D~~~~l~~a~~~gk~vL 215 (425)
T TIGR00184 189 YAEELKPF-VVDVSVELNEALDEGEKVL 215 (425)
T ss_pred HHHHHhhh-cccHHHHHHHHHHCCCeEE
Confidence 3333 443 1266666766666654433
No 145
>PRK14291 chaperone protein DnaJ; Provisional
Probab=38.10 E-value=60 Score=29.07 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=37.1
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. .+.++|+++|++.=+..+|.... .....+=|. .|.+.+.+..+.--+.+|+.|+.
T Consensus 9 Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~-~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 9 LGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFK-EINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHH-HHHHHHHHhcCHHHHHHHhhhcc
Confidence 5665 78889999998887777766421 123333343 46666665555556677777764
No 146
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=36.98 E-value=41 Score=20.65 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.2
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEK 103 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~ 103 (168)
+|+. ++.++|+++|++.-+..+|..
T Consensus 6 Lgl~~~~~~~~ik~~y~~l~~~~HPD~ 32 (55)
T cd06257 6 LGVPPDASDEEIKKAYRKLALKYHPDK 32 (55)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCC
Confidence 5665 789999999999999877754
No 147
>PRK14299 chaperone protein DnaJ; Provisional
Probab=36.56 E-value=61 Score=27.87 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=37.7
Q ss_pred HcCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 78 KYGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 78 ~~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
-.||. .++++|+++|++.=+..+|.... .....+=+ ..|.+.+.+..+.--.++|+.|+.
T Consensus 9 vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f-~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 9 ILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKF-KEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHH-HHHHHHHHHhcCHHHHHHHHhcCC
Confidence 35665 78889999998888877776532 22222223 456666665544566777777654
No 148
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=36.52 E-value=38 Score=21.21 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 030985 69 EETYASIARKYGLNVDSADI 88 (168)
Q Consensus 69 ~e~Ya~va~~~Gi~v~~e~l 88 (168)
.+...++|+++|..++++++
T Consensus 29 ~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 29 PEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHHHHcCCCCCHHHh
Confidence 34567889999999999876
No 149
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=35.89 E-value=22 Score=27.85 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=13.3
Q ss_pred cEEEEecCCcccccc
Q 030985 51 DAVLLDAGGTLLQLA 65 (168)
Q Consensus 51 rlVtFDA~GTLi~~r 65 (168)
|+++||-+|||+.-.
T Consensus 2 ~~~~~d~dg~l~~~~ 16 (161)
T TIGR01261 2 KILFIDRDGTLIEEP 16 (161)
T ss_pred CEEEEeCCCCccccC
Confidence 689999999999954
No 150
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=35.43 E-value=20 Score=28.27 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=21.1
Q ss_pred cE-EEEecCCccccccCCHHHHHHHHHHHcCCC--CCHHHHH
Q 030985 51 DA-VLLDAGGTLLQLAEPVEETYASIARKYGLN--VDSADIK 89 (168)
Q Consensus 51 rl-VtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~--v~~e~l~ 89 (168)
++ |.+|++|||..+-+..-+.|. +.||.. ++++++.
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~~ 40 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDIT 40 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGGT
T ss_pred CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHhh
Confidence 45 899999999988544433332 467776 6555543
No 151
>COG1647 Esterase/lipase [General function prediction only]
Probab=34.85 E-value=62 Score=27.92 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=9.2
Q ss_pred CchhHHHHHHH
Q 030985 109 DGRPFWRLVVS 119 (168)
Q Consensus 109 ~~~~WW~~vV~ 119 (168)
++++||+++..
T Consensus 64 ~~~DW~~~v~d 74 (243)
T COG1647 64 TPRDWWEDVED 74 (243)
T ss_pred CHHHHHHHHHH
Confidence 78999998774
No 152
>PTZ00445 p36-lilke protein; Provisional
Probab=34.82 E-value=33 Score=29.09 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=25.9
Q ss_pred cCCccEEEEecCCcccc-----ccCC----------H---HHHHHHHHHHcCCCC
Q 030985 47 KKAYDAVLLDAGGTLLQ-----LAEP----------V---EETYASIARKYGLNV 83 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~-----~r~p----------V---~e~Ya~va~~~Gi~v 83 (168)
...||+|.+|.+.||+. ...| + -......+.+.||.+
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v 94 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKI 94 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeE
Confidence 45699999999999998 3333 1 223455567888873
No 153
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=34.47 E-value=25 Score=28.93 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.0
Q ss_pred CccEEEEecCCcccccc
Q 030985 49 AYDAVLLDAGGTLLQLA 65 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~r 65 (168)
+-++|+||.+|||..+.
T Consensus 2 ~~~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIV 18 (244)
T ss_pred CcEEEEEecCccccCCc
Confidence 34789999999998753
No 154
>PRK14294 chaperone protein DnaJ; Provisional
Probab=34.33 E-value=75 Score=28.25 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=37.1
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. ++.++|+++|++.=+..+|....-.....+-|.+| .+.+.+..+..-..+|++|+.
T Consensus 10 lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~-~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 10 LGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEA-AEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHH-HHHHHHhccHHHHHHHHhhcc
Confidence 4565 77888998888887777766532222233444433 456655555566777777764
No 155
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=33.61 E-value=51 Score=25.66 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCccEEEEecCCccccccC-----CHHHHHHHHHHHcCCC
Q 030985 48 KAYDAVLLDAGGTLLQLAE-----PVEETYASIARKYGLN 82 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~-----pV~e~Ya~va~~~Gi~ 82 (168)
..+++|.+|.+|||...+. .+.+. -+.+++.|+.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~-L~~Lk~~g~~ 61 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHNEAYPALRDW-IEELKAAGRK 61 (170)
T ss_pred CCCCEEEEecCCccccCCCCCcChhHHHH-HHHHHHcCCE
Confidence 5689999999999995443 23222 2334566766
No 156
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=32.91 E-value=27 Score=29.02 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.7
Q ss_pred CCccEEEEecCCccc
Q 030985 48 KAYDAVLLDAGGTLL 62 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi 62 (168)
.++.+|.||+++||+
T Consensus 70 ~~~~avv~DIDeTvL 84 (229)
T PF03767_consen 70 DKPPAVVFDIDETVL 84 (229)
T ss_dssp TSEEEEEEESBTTTE
T ss_pred CCCcEEEEECCcccc
Confidence 468999999999999
No 157
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=32.36 E-value=33 Score=27.69 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.4
Q ss_pred cCCccEEEEecCCcccccc
Q 030985 47 KKAYDAVLLDAGGTLLQLA 65 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r 65 (168)
...||+|.||.++||..+.
T Consensus 38 ~~Gik~li~DkDNTL~~~~ 56 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPY 56 (168)
T ss_pred hcCceEEEEcCCCCCCCCC
Confidence 4569999999999998765
No 158
>PRK14287 chaperone protein DnaJ; Provisional
Probab=32.23 E-value=72 Score=28.47 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=34.1
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. .+.++|+++|++.=+..+|.... .....+=+ .-|.+.+.+..+.--..+|++|+.
T Consensus 10 Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f-~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 10 LGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKF-KEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHH-HHHHHHHHHhCcHhHHHHHHhhCC
Confidence 4665 67788888888777766665422 11222222 235566655545555666776653
No 159
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=31.52 E-value=73 Score=25.03 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhhc
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFAA 98 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk~ 98 (168)
-|+++|+.+|++ -++++++.+++++.+.
T Consensus 128 d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~ 159 (177)
T cd02010 128 DFVKYAESFGAKGYRIESADDLLPVLERALAA 159 (177)
T ss_pred CHHHHHHHCCCEEEEECCHHHHHHHHHHHHhC
Confidence 589999999997 4789999999999874
No 160
>PLN03017 trehalose-phosphatase
Probab=31.39 E-value=40 Score=30.51 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=12.9
Q ss_pred CCccEEEEecCCccc
Q 030985 48 KAYDAVLLDAGGTLL 62 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi 62 (168)
.+-.+|++|.+|||+
T Consensus 109 ~k~~llflD~DGTL~ 123 (366)
T PLN03017 109 GKQIVMFLDYDGTLS 123 (366)
T ss_pred CCCeEEEEecCCcCc
Confidence 345889999999999
No 161
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=31.10 E-value=83 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhhc
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFAA 98 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk~ 98 (168)
-|.++|+.+|++ -++++++.+++++++.
T Consensus 133 d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~ 164 (175)
T cd02009 133 DFEHLAKAYGLEYRRVSSLDELEQALESALAQ 164 (175)
T ss_pred CHHHHHHHcCCCeeeCCCHHHHHHHHHHHHhC
Confidence 589999999997 3789999999999874
No 162
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=30.71 E-value=60 Score=20.34 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=20.5
Q ss_pred HcCCC--CCHHHHHHHHHHHhhccCCCC
Q 030985 78 KYGLN--VDSADIKKGFRKAFAAPWPEK 103 (168)
Q Consensus 78 ~~Gi~--v~~e~l~~~F~~afk~~~p~~ 103 (168)
-+||. .+.++|+++|++.-+..+|..
T Consensus 6 vLgl~~~~~~~~ik~ay~~l~~~~HPD~ 33 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKLALKYHPDK 33 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCC
Confidence 35665 788999999999998887754
No 163
>PRK14282 chaperone protein DnaJ; Provisional
Probab=30.58 E-value=96 Score=27.58 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=39.3
Q ss_pred HcCCC--CCHHHHHHHHHHHhhccCCCCCCC-CCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 78 KYGLN--VDSADIKKGFRKAFAAPWPEKLRY-EGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 78 ~~Gi~--v~~e~l~~~F~~afk~~~p~~p~y-~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
-+||. +++++|+++|++.=+..+|...+- .....+.|.+ |.+.+.+..+.--..+|++|+.
T Consensus 9 ~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~-i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 9 ILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKE-IQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHH-HHHHHHHhcChhhHHHHhhcCc
Confidence 35665 788999999998888877765321 1234555544 5566665555566677777653
No 164
>PRK14285 chaperone protein DnaJ; Provisional
Probab=30.55 E-value=72 Score=28.42 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=34.0
Q ss_pred HcCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhC
Q 030985 78 KYGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSF 138 (168)
Q Consensus 78 ~~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~ 138 (168)
-.||. .+.++|+++|++.-+..+|....-.....+-| ..|.+.+.+..+.--+.+|++|+
T Consensus 8 iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f-~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 8 ILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIF-KEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHcCcchhHHHHhcC
Confidence 35665 77888999998888887776522111222333 33445554433333455666654
No 165
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=30.43 E-value=51 Score=29.50 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=22.8
Q ss_pred cCCccEEEEecCCccccccCCHHH--HHHHH
Q 030985 47 KKAYDAVLLDAGGTLLQLAEPVEE--TYASI 75 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r~pV~e--~Ya~v 75 (168)
+..|++|-||.+.||++.+.|--+ +|.-+
T Consensus 9 l~~i~~~GFDmDyTLa~Y~~~~~e~L~y~~~ 39 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYKSPELEALIYDLA 39 (343)
T ss_pred cccCCEEEECccccccccChHHHHHHHHHHH
Confidence 567999999999999999986554 44433
No 166
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=29.58 E-value=1.7e+02 Score=27.76 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=53.8
Q ss_pred ccCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcc--CC----CCCC-CCCCchh
Q 030985 46 VKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSADIKKGFRKAFAAP--WP----EKLR-YEGDGRP 112 (168)
Q Consensus 46 ~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~~--~p----~~p~-y~g~~~~ 112 (168)
.+.++.+||=|=+|.| .||-+|+++-.+=..-|+-.++.++-.++-.+|.++. .| .||. |+|+-++
T Consensus 361 lR~~mQvVFQDPygSL-sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ 433 (534)
T COG4172 361 LRRRMQVVFQDPYGSL-SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433 (534)
T ss_pred hhhhceEEEeCCCCCC-CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence 6788999999999996 8999999999998888888899999999999999863 23 3554 3566665
No 167
>PRK14298 chaperone protein DnaJ; Provisional
Probab=29.41 E-value=75 Score=28.47 Aligned_cols=59 Identities=29% Similarity=0.300 Sum_probs=33.7
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
+||. .+.++|+++|++.=+..+|.... .....+-| ..|.+.+.+..+..-..+|++|+.
T Consensus 11 Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f-~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 11 LGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKF-KEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHH-HHHHHHHHHhcchHhhhhhhhcCc
Confidence 4555 67788888888776666665421 12222333 345556655545555666776653
No 168
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=29.39 E-value=96 Score=24.00 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCC----CCHHHHHHHHHHHhhc
Q 030985 70 ETYASIARKYGLN----VDSADIKKGFRKAFAA 98 (168)
Q Consensus 70 e~Ya~va~~~Gi~----v~~e~l~~~F~~afk~ 98 (168)
--|.++|+.+|++ -++++|+++++++.+.
T Consensus 112 ~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~ 144 (157)
T cd02001 112 VNLEAWAAACGYLVLSAPLLGGLGSEFAGLLAT 144 (157)
T ss_pred CCHHHHHHHCCCceEEcCCHHHHHHHHHHHHhC
Confidence 3589999999997 4689999999999874
No 169
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=29.02 E-value=84 Score=19.46 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 030985 69 EETYASIARKYGLNVDSADIKKGFRKAFA 97 (168)
Q Consensus 69 ~e~Ya~va~~~Gi~v~~e~l~~~F~~afk 97 (168)
+..|.+||+..| +++..|+....+|-+
T Consensus 26 g~s~~eIa~~l~--~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 26 GMSYAEIAEILG--ISESTVKRRLRRARK 52 (54)
T ss_dssp ---HHHHHHHCT--S-HHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHC--cCHHHHHHHHHHHHh
Confidence 346789999997 567788888777755
No 170
>PRK14283 chaperone protein DnaJ; Provisional
Probab=29.01 E-value=97 Score=27.67 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=37.8
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. .+.++|+++|++.=+..+|.... .....+=|. -|.+.+.+..+..-+.+|+.|+.
T Consensus 11 Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~-~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 11 LGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFK-EISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHH-HHHHHHHHhchhHHHHHHhhhcc
Confidence 5776 77889999998887777776432 233444454 44556655555566777777653
No 171
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=28.63 E-value=58 Score=27.16 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=14.7
Q ss_pred CCccEEEEecCCcccccc
Q 030985 48 KAYDAVLLDAGGTLLQLA 65 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r 65 (168)
.+.+++.||+.|||....
T Consensus 156 ~~~~~~~~D~dgtl~~~~ 173 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMG 173 (300)
T ss_pred CCCCEEEEECCCcCcCCC
Confidence 346899999999999743
No 172
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=28.33 E-value=43 Score=27.54 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=25.1
Q ss_pred CCccEEEEecCCccccccCCH----HHHHHHHHHHcCCC
Q 030985 48 KAYDAVLLDAGGTLLQLAEPV----EETYASIARKYGLN 82 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~r~pV----~e~Ya~va~~~Gi~ 82 (168)
..+|.|.+|+++||+....|= -.....-+++.|+.
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIK 64 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCE
Confidence 348999999999999765432 22445556788886
No 173
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=28.01 E-value=88 Score=25.14 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhhc
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFAA 98 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk~ 98 (168)
-|.++|+.+|++ -++++|+.+++++.+.
T Consensus 142 d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~ 173 (205)
T cd02003 142 DFAANARSLGARVEKVKTIEELKAALAKAKAS 173 (205)
T ss_pred CHHHHHHhCCCEEEEECCHHHHHHHHHHHHhC
Confidence 588999999997 4799999999999875
No 174
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=27.67 E-value=27 Score=21.06 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.9
Q ss_pred ccHHHHHhhhhhcCCcccc
Q 030985 146 FLIPKLSLQVKECSGLLET 164 (168)
Q Consensus 146 DViP~L~~~~k~~~g~~~~ 164 (168)
-|-|+|+-++|.|+|-+.|
T Consensus 8 ticpt~~~~akkc~g~iat 26 (34)
T PF06457_consen 8 TICPTVKPWAKKCSGSIAT 26 (34)
T ss_dssp HHHHHHHHHHCTBSCCHHH
T ss_pred hcCcccHHHHHHccccHHH
Confidence 4779999999999997644
No 175
>PRK14290 chaperone protein DnaJ; Provisional
Probab=27.38 E-value=90 Score=27.71 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=35.9
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCC-CCchhHHHHHHHHHhCCCchHHHHHHHHhhC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYE-GDGRPFWRLVVSEATGCTNDDYFEEVYEVSF 138 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~-g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~ 138 (168)
.||. ++.++|+++|++.=++.+|....-. ....+.|+ .|.+.+.+..+..-..+|+.|+
T Consensus 9 Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~-~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 9 LGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFK-EISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHH-HHHHHHHHhcChhhhhhhcccC
Confidence 4665 6778888888887777766642211 13445554 4556665555556666777665
No 176
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=27.10 E-value=55 Score=30.29 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=22.7
Q ss_pred ccccccCCCcccCCccEEEEecCCccccccC
Q 030985 36 MPLHSGVGKSVKKAYDAVLLDAGGTLLQLAE 66 (168)
Q Consensus 36 ~~~~~~~~~~~~~~~rlVtFDA~GTLi~~r~ 66 (168)
-+|..+ +-+...-|.+.||..||||.-+.
T Consensus 63 L~i~~~--~~v~~~~K~i~FD~dgtlI~t~s 91 (422)
T KOG2134|consen 63 LQIFTL--PKVNGGSKIIMFDYDGTLIDTKS 91 (422)
T ss_pred eEEeec--cccCCCcceEEEecCCceeecCC
Confidence 445555 55677789999999999998775
No 177
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=27.08 E-value=71 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.6
Q ss_pred ccEEEEecCCccccccCCHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhh
Q 030985 50 YDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVD-SADIKKGFRKAFA 97 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~-~e~l~~~F~~afk 97 (168)
.++|++|=+|||+..+++ |..-..++-+.-. .+.+.+--+..|+
T Consensus 5 ~k~lflDRDGtin~d~~~----yv~~~~~~~~~~g~i~al~~l~~~gy~ 49 (181)
T COG0241 5 QKALFLDRDGTINIDKGD----YVDSLDDFQFIPGVIPALLKLQRAGYK 49 (181)
T ss_pred CcEEEEcCCCceecCCCc----ccCcHHHhccCccHHHHHHHHHhCCCe
Confidence 689999999999999987 6665666655532 2334443355555
No 178
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=26.56 E-value=97 Score=23.17 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Q 030985 71 TYASIARKYGLNVDSADIKKGFRK 94 (168)
Q Consensus 71 ~Ya~va~~~Gi~v~~e~l~~~F~~ 94 (168)
...+.|++.||.+++++|.+.+.+
T Consensus 88 ll~q~A~~~gi~vsd~ev~~~i~~ 111 (154)
T PF13624_consen 88 LLLQEAKKLGISVSDAEVDDAIKQ 111 (154)
T ss_dssp HHHHHHHHTT----HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345667899999999999999887
No 179
>COG4996 Predicted phosphatase [General function prediction only]
Probab=26.46 E-value=35 Score=27.41 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCC----CCc---eee-ccHHHHHh
Q 030985 128 DYFEEVYEVSFY----ETY---VLT-FLIPKLSL 153 (168)
Q Consensus 128 ~l~~eLy~~F~s----e~w---~ly-DViP~L~~ 153 (168)
--+.++|++-+. +-| ..| +++|.|..
T Consensus 127 iH~~~Iwe~~G~V~~~~~~~Di~c~~ei~slLs~ 160 (164)
T COG4996 127 IHFGNIWEYLGNVKCLEMWKDISCYSEIFSLLSH 160 (164)
T ss_pred ccHHHHHHhcCCeeeeEeecchHHHHHHHHHHHh
Confidence 478899999886 445 345 77777765
No 180
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=26.21 E-value=88 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhh
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFA 97 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk 97 (168)
-|+++|+.+|++ -++++|+.+++++++
T Consensus 148 d~~~lA~a~G~~~~~v~~~~el~~al~~a~~ 178 (202)
T cd02006 148 DHVKVAEGLGCKAIRVTKPEELAAAFEQAKK 178 (202)
T ss_pred CHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
Confidence 589999999997 468999999999986
No 181
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.15 E-value=1.3e+02 Score=22.03 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 030985 69 EETYASIARKYGLNVDSADIKKGFRKAFAA 98 (168)
Q Consensus 69 ~e~Ya~va~~~Gi~v~~e~l~~~F~~afk~ 98 (168)
-..|.+||++.|++ +++|...|.+-.-.
T Consensus 50 ~~~Y~~iA~~ng~t--~~~V~~~~a~k~~~ 77 (95)
T PF07027_consen 50 RALYQEIAKKNGIT--VEQVAATAAQKWIE 77 (95)
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHH
Confidence 45799999999987 67788777665553
No 182
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=1.4e+02 Score=27.28 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHhhccCCC
Q 030985 83 VDSADIKKGFRKAFAAPWPE 102 (168)
Q Consensus 83 v~~e~l~~~F~~afk~~~p~ 102 (168)
.++++|+++||+-=++.+|.
T Consensus 16 As~~EIKkAYRkLA~kyHPD 35 (371)
T COG0484 16 ASEEEIKKAYRKLAKKYHPD 35 (371)
T ss_pred CCHHHHHHHHHHHHHHhCCC
Confidence 45555555555544444443
No 183
>PRK14301 chaperone protein DnaJ; Provisional
Probab=25.90 E-value=97 Score=27.68 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=32.0
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSF 138 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~ 138 (168)
+||. ++.++|+++|++.=+..+|....-.....+=|. .|.+.+.+..+..-..+|++|+
T Consensus 10 Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~vL~d~~kr~~yD~~g 70 (373)
T PRK14301 10 LGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFK-EAAEAYEVLRDAEKRARYDRFG 70 (373)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHH-HHHHHHHHhcchhhhhhhhhcc
Confidence 4554 677778887777777666654211112223333 3445555444445566666664
No 184
>PRK14296 chaperone protein DnaJ; Provisional
Probab=25.40 E-value=1.2e+02 Score=27.04 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=36.4
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. +++++|+++|++.=++.+|...+ .....+=+ +-|.+.+.+..|.--..+|++|+.
T Consensus 10 Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F-~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 10 LGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKM-VEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHH-HHHHHHHHHhcCHHHhhhhhhccc
Confidence 5665 77888999888877777766422 22333333 345566665554555677777653
No 185
>PF10084 DUF2322: Uncharacterized protein conserved in bacteria (DUF2322); InterPro: IPR016755 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.33 E-value=1.7e+02 Score=22.02 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=29.1
Q ss_pred EEEEecCCccccc-------cCCHHHHHHHHHHHcCCCCCHHHHHHHH
Q 030985 52 AVLLDAGGTLLQL-------AEPVEETYASIARKYGLNVDSADIKKGF 92 (168)
Q Consensus 52 lVtFDA~GTLi~~-------r~pV~e~Ya~va~~~Gi~v~~e~l~~~F 92 (168)
+-.+|..|+.+.- .+|+. +|..++++||- ++++.-++..
T Consensus 17 l~l~d~~g~~v~~I~n~pGk~GSL~-VY~~La~~fg~-l~~~AA~~GL 62 (100)
T PF10084_consen 17 LDLLDADGNVVAHIENKPGKLGSLA-VYNALAQKFGG-LDAEAAQEGL 62 (100)
T ss_pred eEeecCCCcEEEEecCCCCcceeHH-HHHHHHHHhCC-CCHHHHHHHH
Confidence 4567888777752 23443 99999999999 9998777664
No 186
>PHA02436 hypothetical protein
Probab=25.24 E-value=37 Score=22.23 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=16.8
Q ss_pred HHHHHhCCCc-hHHHHHHHHhhC
Q 030985 117 VVSEATGCTN-DDYFEEVYEVSF 138 (168)
Q Consensus 117 vV~~tfg~~~-~~l~~eLy~~F~ 138 (168)
+|++++|.-. ++.|+++|+.+-
T Consensus 10 iiKE~yGeRkIEEVFeE~YE~~Y 32 (52)
T PHA02436 10 IIKETYGERNIEEVFKEAYESFY 32 (52)
T ss_pred EeehhhchhhHHHHHHHHHHHhc
Confidence 5678887553 789999999864
No 187
>PF14420 Clr5: Clr5 domain
Probab=25.07 E-value=1.8e+02 Score=18.71 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=23.7
Q ss_pred ccCCHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 030985 64 LAEPVEETYASIARKYGLNVDSADIKKGFR 93 (168)
Q Consensus 64 ~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F~ 93 (168)
-..+..++-....++||+.+++.+....|+
T Consensus 19 e~~tl~~v~~~M~~~~~F~at~rqy~~r~~ 48 (54)
T PF14420_consen 19 ENKTLEEVMEIMKEEHGFKATKRQYKRRFK 48 (54)
T ss_pred CCCcHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 345677777777789999999888888876
No 188
>PF11662 DUF3263: Protein of unknown function (DUF3263); InterPro: IPR021678 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.95 E-value=66 Score=23.00 Aligned_cols=25 Identities=20% Similarity=0.582 Sum_probs=17.3
Q ss_pred chhHH------HHHHHHHhCCCchHHHHHHH
Q 030985 110 GRPFW------RLVVSEATGCTNDDYFEEVY 134 (168)
Q Consensus 110 ~~~WW------~~vV~~tfg~~~~~l~~eLy 134 (168)
++.|| .+-|.+.||.++-.++..|=
T Consensus 14 E~~ww~~~GaKe~aIre~fGls~~rYyq~Ln 44 (77)
T PF11662_consen 14 ERRWWRHGGAKEEAIREEFGLSPTRYYQRLN 44 (77)
T ss_pred HHHhCcCCCCcHHHHHHHHCCCHHHHHHHHH
Confidence 45688 47888999988865554443
No 189
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=24.80 E-value=94 Score=19.83 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=21.1
Q ss_pred HcCCC--CCHHHHHHHHHHHhhccCCCC
Q 030985 78 KYGLN--VDSADIKKGFRKAFAAPWPEK 103 (168)
Q Consensus 78 ~~Gi~--v~~e~l~~~F~~afk~~~p~~ 103 (168)
-+||. .+.++|+++|++.-+..+|..
T Consensus 5 iLgl~~~~~~~eik~~y~~l~~~~HPD~ 32 (64)
T PF00226_consen 5 ILGLPPDASDEEIKKAYRRLSKQYHPDK 32 (64)
T ss_dssp HCTSTTTSSHHHHHHHHHHHHHHTSTTT
T ss_pred HCCCCCCCCHHHHHHHHHhhhhcccccc
Confidence 46776 788999999999999887754
No 190
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.66 E-value=83 Score=26.77 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=21.2
Q ss_pred cCCccEEEEecCCccccccCCHHHHHHHHHHHcCCC
Q 030985 47 KKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLN 82 (168)
Q Consensus 47 ~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~ 82 (168)
...-++|+||++-|+|.-. .--.+|+-.|+.
T Consensus 13 ~~~~~aVcFDvDSTvi~eE-----gIdelA~~~G~~ 43 (227)
T KOG1615|consen 13 WRSADAVCFDVDSTVIQEE-----GIDELAAYCGVG 43 (227)
T ss_pred HHhcCeEEEecCcchhHHh-----hHHHHHHHhCch
Confidence 3456899999999999643 344455555554
No 191
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=24.60 E-value=74 Score=21.01 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred CccccccCCHHHHHHHHHHHcCCCCCHHHHHHHH
Q 030985 59 GTLLQLAEPVEETYASIARKYGLNVDSADIKKGF 92 (168)
Q Consensus 59 GTLi~~r~pV~e~Ya~va~~~Gi~v~~e~l~~~F 92 (168)
..-++-+....+.|.+||..+|-.++++++.+..
T Consensus 16 ~~~y~~~~~r~~aw~~Ia~~l~~~~~~~~~~~~w 49 (85)
T PF10545_consen 16 HPDYKNRQLREEAWQEIARELGKEFSVDDCKKRW 49 (85)
T ss_pred CcccCCHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence 3334445567889999999999777776655543
No 192
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=24.59 E-value=1.2e+02 Score=20.06 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q 030985 69 EETYASIARKYGLNVDSADIKKG 91 (168)
Q Consensus 69 ~e~Ya~va~~~Gi~v~~e~l~~~ 91 (168)
.+.-.++|++.|+.++.++|...
T Consensus 27 ~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 27 PEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Confidence 44567899999999999999874
No 193
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=24.10 E-value=46 Score=28.66 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.8
Q ss_pred CCccEEEEecCCcccc
Q 030985 48 KAYDAVLLDAGGTLLQ 63 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~ 63 (168)
+.+|+|.+|.++||..
T Consensus 1 ~~~k~~v~DlDnTlw~ 16 (320)
T TIGR01686 1 PALKVLVLDLDNTLWG 16 (320)
T ss_pred CCeEEEEEcCCCCCCC
Confidence 4689999999999964
No 194
>PRK14284 chaperone protein DnaJ; Provisional
Probab=23.65 E-value=1.4e+02 Score=26.79 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=37.1
Q ss_pred cCCC--CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCCchHHHHHHHHhhCC
Q 030985 79 YGLN--VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCTNDDYFEEVYEVSFY 139 (168)
Q Consensus 79 ~Gi~--v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~~~~l~~eLy~~F~s 139 (168)
.||. +++++|+++|++.=+..+|...+-.....+=+. .|.+.+.+..+.--+++|++|+.
T Consensus 7 Lgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 7 LGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFK-EVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHH-HHHHHHHHhcCHHHHHHHHhccc
Confidence 5665 788999999888777766654221122333343 45566655445566778888763
No 195
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=23.39 E-value=49 Score=28.47 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.3
Q ss_pred CCccEEEEecCCccccc
Q 030985 48 KAYDAVLLDAGGTLLQL 64 (168)
Q Consensus 48 ~~~rlVtFDA~GTLi~~ 64 (168)
.++.+|.||+++|++.-
T Consensus 73 ~kp~AVV~DIDeTvLdn 89 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDN 89 (266)
T ss_pred CCCCEEEEeCccccccC
Confidence 34789999999999854
No 196
>PRK14278 chaperone protein DnaJ; Provisional
Probab=23.30 E-value=1.1e+02 Score=27.49 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHhhccCCC
Q 030985 83 VDSADIKKGFRKAFAAPWPE 102 (168)
Q Consensus 83 v~~e~l~~~F~~afk~~~p~ 102 (168)
.++++|+++|++-=+..+|.
T Consensus 15 a~~~eik~ayr~la~~~hpD 34 (378)
T PRK14278 15 ASDAEIKRAYRKLARELHPD 34 (378)
T ss_pred CCHHHHHHHHHHHHHHHCCC
Confidence 44555555555544444443
No 197
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=23.18 E-value=53 Score=27.03 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=14.1
Q ss_pred ccEEEEecCCcccccc
Q 030985 50 YDAVLLDAGGTLLQLA 65 (168)
Q Consensus 50 ~rlVtFDA~GTLi~~r 65 (168)
-+++.+|.++||++.+
T Consensus 21 kklLVLDLDeTLvh~~ 36 (195)
T TIGR02245 21 KKLLVLDIDYTLFDHR 36 (195)
T ss_pred CcEEEEeCCCceEccc
Confidence 4899999999999864
No 198
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=22.89 E-value=1.6e+02 Score=20.15 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 030985 67 PVEETYASIARKYGLN-VDSADIKKGF 92 (168)
Q Consensus 67 pV~e~Ya~va~~~Gi~-v~~e~l~~~F 92 (168)
-|.++|..+++..|++ ++...+..--
T Consensus 20 ~vy~~Y~~lc~~~~~~pls~~r~~~~l 46 (85)
T PF09079_consen 20 EVYEVYEELCESLGVDPLSYRRFSDYL 46 (85)
T ss_dssp HHHHHHHHHHHHTTS----HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4788999999999997 7765555444
No 199
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=22.89 E-value=1.4e+02 Score=22.89 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhhc
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFAA 98 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk~ 98 (168)
-|.++|+.+|++ -++++|+.+++++.+.
T Consensus 130 d~~~la~a~G~~~~~v~~~~el~~al~~a~~~ 161 (172)
T cd02004 130 RYDLVAEAFGGKGELVTTPEELKPALKRALAS 161 (172)
T ss_pred CHHHHHHHCCCeEEEECCHHHHHHHHHHHHHc
Confidence 488999999997 3678999999998864
No 200
>PHA03102 Small T antigen; Reviewed
Probab=22.83 E-value=1.5e+02 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=14.2
Q ss_pred HHcCCC--C--CHHHHHHHHHHHhhccCCCC
Q 030985 77 RKYGLN--V--DSADIKKGFRKAFAAPWPEK 103 (168)
Q Consensus 77 ~~~Gi~--v--~~e~l~~~F~~afk~~~p~~ 103 (168)
.-.||. . +.++|+++|++.-+..+|..
T Consensus 9 ~vLGl~~~A~~s~~eIKkAYr~la~~~HPDk 39 (153)
T PHA03102 9 DLLGLPRSAWGNLPLMRKAYLRKCLEFHPDK 39 (153)
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHHHCcCC
Confidence 444554 3 55556666655555554443
No 201
>PRK13786 adenylosuccinate synthetase; Provisional
Probab=22.42 E-value=1.9e+02 Score=26.90 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=48.2
Q ss_pred ccCCHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhhccCCCCCCCCCCchhHHHHHHHHHhCCC----chHHHHHHHH
Q 030985 64 LAEPVEETYASIARKYGLN----VDSADIKKGFRKAFAAPWPEKLRYEGDGRPFWRLVVSEATGCT----NDDYFEEVYE 135 (168)
Q Consensus 64 ~r~pV~e~Ya~va~~~Gi~----v~~e~l~~~F~~afk~~~p~~p~y~g~~~~WW~~vV~~tfg~~----~~~l~~eLy~ 135 (168)
.+.-++..|+.-+.+.||. ++++.+.+.++..... -..++.+.++.. .+++++++.+
T Consensus 127 T~rGIGPaY~DK~~R~giR~~Dl~~~~~~~~kl~~~~~~---------------~n~~~~~~~~~~~~~~~~~~~~~~~~ 191 (424)
T PRK13786 127 TKRGIGFAYIDKIARDEVRMSDLVDKERLMRRLEELAPQ---------------KEKEIKELGGDPSIVRDEALIDKYLE 191 (424)
T ss_pred CCCCchHhHHHHhhCccceeehhcCHHHHHHHHHHHHHH---------------HHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 5688999999999999998 4677777777766542 223333333321 1334444443
Q ss_pred hhCC-CCceeeccHHHHHhhhhhcCCc
Q 030985 136 VSFY-ETYVLTFLIPKLSLQVKECSGL 161 (168)
Q Consensus 136 ~F~s-e~w~lyDViP~L~~~~k~~~g~ 161 (168)
+... .+| +.|+...|...+++.+=+
T Consensus 192 ~~~~l~p~-v~Dt~~~l~~al~~gk~v 217 (424)
T PRK13786 192 LGRQLAPY-ITDVSYEINKALDEGKSV 217 (424)
T ss_pred HHHHhhcc-ccCHHHHHHHHHHcCCcE
Confidence 3222 333 117777777767665533
No 202
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.10 E-value=1.1e+02 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhccC
Q 030985 74 SIARKYGLNVDSADIKKGFRKAFAAPW 100 (168)
Q Consensus 74 ~va~~~Gi~v~~e~l~~~F~~afk~~~ 100 (168)
+.+.++||.+++++|+...-+|.+++.
T Consensus 79 ~~L~~~gi~~t~~~i~~~IEaAV~~m~ 105 (108)
T PF09682_consen 79 ERLKKKGIKVTDEQIEGAIEAAVKEMN 105 (108)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHh
Confidence 346799999999999999999988764
No 203
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.92 E-value=57 Score=21.25 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=24.4
Q ss_pred chHHHHHHHHhhCCCCceee-ccHHHHHhhhhhcCCcc
Q 030985 126 NDDYFEEVYEVSFYETYVLT-FLIPKLSLQVKECSGLL 162 (168)
Q Consensus 126 ~~~l~~eLy~~F~se~w~ly-DViP~L~~~~k~~~g~~ 162 (168)
.+++++.|-++|.-++=++. ||..+|..+.+ +|++
T Consensus 32 ~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~--~glI 67 (68)
T PF05402_consen 32 VEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE--KGLI 67 (68)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH--TT--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--CcCc
Confidence 47899999999965444567 99999998665 4554
No 204
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=21.72 E-value=1.2e+02 Score=24.15 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhh
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFA 97 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk 97 (168)
-|.++|+.+|++ -++++|+.+++++++
T Consensus 134 d~~~lA~a~G~~~~~v~~~~el~~al~~a~~ 164 (196)
T cd02013 134 SFAKIAEACGAKGITVDKPEDVGPALQKAIA 164 (196)
T ss_pred CHHHHHHHCCCEEEEECCHHHHHHHHHHHHh
Confidence 488999999997 368999999999987
No 205
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=21.70 E-value=1.6e+02 Score=23.05 Aligned_cols=28 Identities=18% Similarity=0.573 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhhc
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFAA 98 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk~ 98 (168)
-|.++|+.+|++ -++++++++++++++.
T Consensus 132 d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~ 163 (186)
T cd02015 132 DFVKLAEAYGIKGLRVEKPEELEAALKEALAS 163 (186)
T ss_pred CHHHHHHHCCCceEEeCCHHHHHHHHHHHHhC
Confidence 489999999997 3688999999999874
No 206
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=21.48 E-value=60 Score=27.38 Aligned_cols=16 Identities=31% Similarity=0.113 Sum_probs=13.3
Q ss_pred CccEEEEecCCccccc
Q 030985 49 AYDAVLLDAGGTLLQL 64 (168)
Q Consensus 49 ~~rlVtFDA~GTLi~~ 64 (168)
++-.|.||++||++.-
T Consensus 62 ~p~av~~DIDeTvldn 77 (237)
T PRK11009 62 PPMAVGFDIDDTVLFS 77 (237)
T ss_pred CCcEEEEECcCccccC
Confidence 3559999999999973
No 207
>PRK01117 adenylosuccinate synthetase; Provisional
Probab=21.46 E-value=3.7e+02 Score=25.01 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=27.7
Q ss_pred cccCCHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhh
Q 030985 63 QLAEPVEETYASIARKYGLN----VDSADIKKGFRKAFA 97 (168)
Q Consensus 63 ~~r~pV~e~Ya~va~~~Gi~----v~~e~l~~~F~~afk 97 (168)
..+.-++..|+.-+.+.||. ++++.+.+.+.....
T Consensus 128 TT~rGIGpay~dk~~R~gir~~Dl~~~~~l~~kl~~~~~ 166 (430)
T PRK01117 128 TTGRGIGPAYEDKVARRGIRVGDLLDPETFAEKLEENLE 166 (430)
T ss_pred CCCCCchHHHHHhhhcccccHHHhcCHHHHHHHHHHHHH
Confidence 35678999999999999998 467777777776655
No 208
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=49 Score=25.45 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=18.0
Q ss_pred HHhCCCchHHHHHHHHhhCCCC
Q 030985 120 EATGCTNDDYFEEVYEVSFYET 141 (168)
Q Consensus 120 ~tfg~~~~~l~~eLy~~F~se~ 141 (168)
++|..++|+.+.+||+.|++++
T Consensus 82 ~sFAPsPDq~v~~Ly~cf~~d~ 103 (116)
T KOG3439|consen 82 NSFAPSPDQIVGNLYECFGTDG 103 (116)
T ss_pred CccCCCchhHHHHHHHhcCCCC
Confidence 5666677899999999999844
No 209
>PF12471 GTP_CH_N: GTP cyclohydrolase N terminal ; InterPro: IPR022163 This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. This family is the N-terminal of GTP cyclohydrolase, the rate limiting enzyme in the synthesis of tetrahydrobiopterin.
Probab=20.95 E-value=3.2e+02 Score=22.85 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=71.9
Q ss_pred chHHHHHhhcCcccccc--ccccccCCccccccCCCcccCCccEEEEecCCccccccCCHHHHHHHHHHHcCCCCCHH--
Q 030985 11 GNSLLKALKMKPLRFNI--SNRLRCSSMPLHSGVGKSVKKAYDAVLLDAGGTLLQLAEPVEETYASIARKYGLNVDSA-- 86 (168)
Q Consensus 11 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~rlVtFDA~GTLi~~r~pV~e~Ya~va~~~Gi~v~~e-- 86 (168)
+-++++||..---..+. .-=|+..+-+..-|--.+|..+-|+|++|=.|-| +.++|.+.. +-|+++-|.
T Consensus 54 SYsvYrALAVAsg~L~~~hrpD~tnT~P~~~igP~p~W~dp~kIVsmDPwGhl------v~~~f~~~~-~~G~DiRPTIA 126 (194)
T PF12471_consen 54 SYSVYRALAVASGALDPDHRPDLTNTEPAFDIGPHPQWSDPKKIVSMDPWGHL------VPEVFKDEI-EEGYDIRPTIA 126 (194)
T ss_pred chHHHHHHHHHhcCCCcccCCCccCCCCCCCCCCCCCcCCCCcEEEeCCcccc------cHHHHHHHH-HcCCccCccce
Confidence 34678887643222222 2224445555555633559999999999999988 578999988 888875442
Q ss_pred ---------HHHHHHHHHhhccCCC-CCCCCC--------CchhHHHHHHHHHhCCCchHHHHHHHHh
Q 030985 87 ---------DIKKGFRKAFAAPWPE-KLRYEG--------DGRPFWRLVVSEATGCTNDDYFEEVYEV 136 (168)
Q Consensus 87 ---------~l~~~F~~afk~~~p~-~p~y~g--------~~~~WW~~vV~~tfg~~~~~l~~eLy~~ 136 (168)
+|.++.++.-=..--. -.+-.| =+--||--=|.+-||++...+=+.||++
T Consensus 127 vTkAh~~lpEi~eav~~GrL~~DGki~~~~~g~~~VTK~AvEPVWyLPGVA~RFGi~E~~LRR~LFE~ 194 (194)
T PF12471_consen 127 VTKAHMKLPEIREAVRKGRLVPDGKIVLNSNGDLAVTKAAVEPVWYLPGVAERFGISEGELRRALFEH 194 (194)
T ss_pred eeccccCcHHHHHHHHhCCCCCCCeEEecCCCcEEEEEEEecccccchhhHHHcCCCHHHHHHHHhcC
Confidence 4555544432111100 111111 1334888889999999877666666653
No 210
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=20.94 E-value=1.5e+02 Score=22.99 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhhcc
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFAAP 99 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk~~ 99 (168)
-|.++|+.+|++ -+++++++.++++++..
T Consensus 131 d~~~la~a~G~~~~~v~~~~el~~~l~~a~~~~ 163 (178)
T cd02014 131 DFAKIAEAMGIKGIRVEDPDELEAALDEALAAD 163 (178)
T ss_pred CHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCC
Confidence 588999999996 36889999999998753
No 211
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=20.90 E-value=1.1e+02 Score=22.48 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=17.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhc
Q 030985 73 ASIARKYGLNVDSADIKKGFRKAFAA 98 (168)
Q Consensus 73 a~va~~~Gi~v~~e~l~~~F~~afk~ 98 (168)
.+.|+++||.+++++|+++...--+.
T Consensus 57 ~q~ak~~gI~vsd~evd~~i~~ia~~ 82 (118)
T PF09312_consen 57 LQEAKRLGIKVSDEEVDEAIANIAKQ 82 (118)
T ss_dssp HHHHHHCT----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 55678999999999999999776554
No 212
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=20.84 E-value=1.2e+02 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.611 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCC---C-CH--HHHHHHHHHHhhcc
Q 030985 71 TYASIARKYGLN---V-DS--ADIKKGFRKAFAAP 99 (168)
Q Consensus 71 ~Ya~va~~~Gi~---v-~~--e~l~~~F~~afk~~ 99 (168)
-|.++|+.+|++ + ++ ++++++++++++..
T Consensus 112 d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~ 146 (153)
T PF02775_consen 112 DFAALAEAFGIKGARVTTPDPEELEEALREALESG 146 (153)
T ss_dssp GHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCC
Confidence 589999999997 2 45 99999999999643
No 213
>smart00788 Adenylsucc_synt Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Furt
Probab=20.64 E-value=5.3e+02 Score=23.88 Aligned_cols=35 Identities=9% Similarity=0.253 Sum_probs=27.3
Q ss_pred cccCCHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhh
Q 030985 63 QLAEPVEETYASIARKYGLN----VDSADIKKGFRKAFA 97 (168)
Q Consensus 63 ~~r~pV~e~Ya~va~~~Gi~----v~~e~l~~~F~~afk 97 (168)
..+.-++..|+.-+.+.||. .+++.+.+.++....
T Consensus 126 TT~rGIGpay~dk~~R~gir~~Dl~~~~~~~~kl~~~~~ 164 (421)
T smart00788 126 TTGRGIGPAYEDKVARRGIRVGDLFDEDVFREKLEELLD 164 (421)
T ss_pred CCCCCcHHHHHHHhhccCcchhhhcCHHHHHHHHHHHHH
Confidence 35678999999999999997 467777777776654
No 214
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=20.11 E-value=1.5e+02 Score=18.19 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 030985 70 ETYASIARKYGLNVDSADIKKGFRKAFAA 98 (168)
Q Consensus 70 e~Ya~va~~~Gi~v~~e~l~~~F~~afk~ 98 (168)
..|.+||+.+|+ +.+.|.+..++|.+.
T Consensus 21 ~t~~eIa~~lg~--s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 21 LTLEEIAERLGI--SRSTVRRILKRALKK 47 (50)
T ss_dssp -SHHHHHHHHTS--CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCC--cHHHHHHHHHHHHHH
Confidence 357889999987 677777777777654
No 215
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=20.10 E-value=1.8e+02 Score=22.26 Aligned_cols=28 Identities=25% Similarity=0.627 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHHhhc
Q 030985 71 TYASIARKYGLN----VDSADIKKGFRKAFAA 98 (168)
Q Consensus 71 ~Ya~va~~~Gi~----v~~e~l~~~F~~afk~ 98 (168)
-|.++|+.+|++ -++++++++++++.+.
T Consensus 137 d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~ 168 (178)
T cd02002 137 DFAAIAKAFGVEAERVETPEELDEALREALAE 168 (178)
T ss_pred CHHHHHHHcCCceEEeCCHHHHHHHHHHHHhC
Confidence 478899999987 3688999999998863
No 216
>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=1.2e+02 Score=22.09 Aligned_cols=36 Identities=11% Similarity=0.339 Sum_probs=27.0
Q ss_pred ccCCHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHhhcc
Q 030985 64 LAEPVEETYASIARKYGLN-----------VDSADIKKGFRKAFAAP 99 (168)
Q Consensus 64 ~r~pV~e~Ya~va~~~Gi~-----------v~~e~l~~~F~~afk~~ 99 (168)
...-+..+|+.++.+|++. ++|+++++..-+.+...
T Consensus 34 e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~ 80 (85)
T COG2157 34 EEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTE 80 (85)
T ss_pred HHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhcc
Confidence 3445778999999999984 57888888777666543
No 217
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=20.03 E-value=87 Score=20.85 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=26.6
Q ss_pred CCCchhHHHHHHHHHhCCC--chHHHHHHHHhhCC
Q 030985 107 EGDGRPFWRLVVSEATGCT--NDDYFEEVYEVSFY 139 (168)
Q Consensus 107 ~g~~~~WW~~vV~~tfg~~--~~~l~~eLy~~F~s 139 (168)
.|....||..++.+.-... =+++.+.+..+|.+
T Consensus 8 ~g~A~~w~~~~~~~~~~~~~~W~~~~~~~~~~f~~ 42 (96)
T PF03732_consen 8 KGPARQWYRNLRPNEIRDFITWEEFKDAFRKRFFP 42 (96)
T ss_pred cCHHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHhh
Confidence 4678899999998887642 27899999999986
Done!