BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030986
MASFCLSTASTSKTLAFAPPHAAKMTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQT
LVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFS
PMKTPLPPPLPCDPPEEDEEEEEKKEEEEENPDKEDPDKEESGNSNSQ

High Scoring Gene Products

Symbol, full name Information P value
AT2G17240 protein from Arabidopsis thaliana 3.1e-19
AT3G24506 protein from Arabidopsis thaliana 5.8e-18

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030986
        (168 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2059647 - symbol:AT2G17240 "AT2G17240" species...   230  3.1e-19   1
TAIR|locus:505006370 - symbol:AT3G24506 "AT3G24506" speci...   218  5.8e-18   1


>TAIR|locus:2059647 [details] [associations]
            symbol:AT2G17240 "AT2G17240" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] GO:GO:0009507
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC007127 EMBL:AF380653
            EMBL:AY054153 EMBL:AY088315 IPI:IPI00527219 PIR:G84549
            RefSeq:NP_565410.1 UniGene:At.14402 STRING:Q9SII4 PRIDE:Q9SII4
            EnsemblPlants:AT2G17240.1 GeneID:816229 KEGG:ath:AT2G17240
            TAIR:At2g17240 eggNOG:NOG275318 InParanoid:Q9SII4 OMA:MASLCSA
            ProtClustDB:CLSN2914933 ArrayExpress:Q9SII4 Genevestigator:Q9SII4
            Uniprot:Q9SII4
        Length = 140

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/62 (72%), Positives = 50/62 (80%)

Query:    66 FGFTRVIRYNQRAKR---QVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFSPM 122
             F F+ V R + R  R   QVV MAPEEEKLTRR+PLDFPIEWE+PKP RRPDIFP+FSPM
Sbjct:    39 FAFSSVHRSSSRRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPM 98

Query:   123 KT 124
             KT
Sbjct:    99 KT 100


>TAIR|locus:505006370 [details] [associations]
            symbol:AT3G24506 "AT3G24506" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009536 "plastid" evidence=IDA] GO:GO:0009536
            EMBL:CP002686 EMBL:AB020746 EMBL:AY091105 EMBL:AY122943
            EMBL:AK117426 IPI:IPI00537346 RefSeq:NP_566750.1 UniGene:At.27908
            PRIDE:Q9LV56 EnsemblPlants:AT3G24506.1 GeneID:822043
            KEGG:ath:AT3G24506 TAIR:At3g24506 InParanoid:Q9LV56 OMA:PMKSPLP
            ProtClustDB:CLSN2917252 ArrayExpress:Q9LV56 Genevestigator:Q9LV56
            Uniprot:Q9LV56
        Length = 149

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:    61 LVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKPKPARRPDIFPQFS 120
             + V +F  +R      R + QVV MAPEEEKLTRR+PLDFPIEWE+PKP RRPDIFP+FS
Sbjct:    49 IAVQRFALSR----KTRKQLQVVAMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFS 104

Query:   121 PMKT 124
             PMK+
Sbjct:   105 PMKS 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       109   0.00091  102 3  11 22  0.43    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  524 (56 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.99u 0.16s 11.15t   Elapsed:  00:00:00
  Total cpu time:  10.99u 0.16s 11.15t   Elapsed:  00:00:00
  Start:  Fri May 10 06:47:59 2013   End:  Fri May 10 06:47:59 2013

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