BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030986
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V5P|A Chain A, Complex Structure Of Human Igf2r Domains 11-13 Bound To
           Igf-Ii
 pdb|2V5P|B Chain B, Complex Structure Of Human Igf2r Domains 11-13 Bound To
           Igf-Ii
          Length = 492

 Score = 30.8 bits (68), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 60  TLVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKP 107
            L    F +T +I ++   KR V    P   KL R S  DF  EWE P
Sbjct: 243 CLADKHFNYTSLIAFH--CKRGVSMGTP---KLLRTSECDFVFEWETP 285


>pdb|2V5N|A Chain A, Structure Of Human Igf2r Domains 11-12
          Length = 299

 Score = 30.8 bits (68), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 60  TLVVPQFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKP 107
            L    F +T +I ++   KR V    P   KL R S  DF  EWE P
Sbjct: 243 CLADKHFNYTSLIAFH--CKRGVSXGTP---KLLRTSECDFVFEWETP 285


>pdb|2V5O|A Chain A, Structure Of Human Igf2r Domains 11-14
          Length = 627

 Score = 27.7 bits (60), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 65  QFGFTRVIRYNQRAKRQVVRMAPEEEKLTRRSPLDFPIEWEKP 107
            F +T +I ++   KR V    P   KL R S  DF  EWE P
Sbjct: 248 HFNYTSLIAFH--CKRGVSMGTP---KLLRTSECDFVFEWETP 285


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.130    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,935,997
Number of Sequences: 62578
Number of extensions: 85842
Number of successful extensions: 208
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)