Query 030986
Match_columns 168
No_of_seqs 19 out of 21
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 07:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03066 Nucleoplasmin: Nucleo 46.7 6.5 0.00014 30.9 0.0 11 156-166 137-147 (149)
2 PF10297 Hap4_Hap_bind: Minima 44.2 12 0.00027 21.2 0.9 8 106-113 10-17 (17)
3 COG5271 MDN1 AAA ATPase contai 37.5 24 0.00052 40.0 2.4 35 134-168 3945-3979(4600)
4 PF15364 PAXIP1_C: PAXIP1-asso 28.9 68 0.0015 25.8 3.2 10 102-113 39-48 (141)
5 PF06524 NOA36: NOA36 protein; 23.2 32 0.00068 31.2 0.4 9 98-106 247-255 (314)
6 COG4425 Predicted membrane pro 22.2 88 0.0019 30.5 3.1 88 14-120 428-523 (588)
7 PF02459 Adeno_terminal: Adeno 20.5 32 0.0007 33.1 -0.1 9 36-44 235-243 (548)
8 PF06524 NOA36: NOA36 protein; 18.4 41 0.00089 30.5 0.1 31 132-162 273-303 (314)
9 PF05454 DAG1: Dystroglycan (D 18.2 40 0.00087 29.6 0.0 49 74-129 171-224 (290)
10 PF04317 DUF463: YcjX-like fam 15.8 1E+02 0.0022 28.9 1.9 62 43-104 33-119 (443)
No 1
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=46.73 E-value=6.5 Score=30.86 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCCcCCCCCC
Q 030986 156 DPDKEESGNSN 166 (168)
Q Consensus 156 ~~d~p~k~~~~ 166 (168)
+....+++.|+
T Consensus 137 e~~ee~~p~K~ 147 (149)
T PF03066_consen 137 EEEEEESPVKK 147 (149)
T ss_dssp -----------
T ss_pred ccccccCCCcc
Confidence 33444455544
No 2
>PF10297 Hap4_Hap_bind: Minimal binding motif of Hap4 for binding to Hap2/3/5 ; InterPro: IPR018287 This entry represents an essential domain of the transcription activator Hap4 that allows it to associate with Hap2, Hap3 and Hap5 to form the Hap complex [, ]. In Saccharomyces cerevisiae (Baker's yeast), the haem-activated protein complex Hap2/3/4/5 plays a major role in the transcription of genes involved in respiration []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.19 E-value=12 Score=21.17 Aligned_cols=8 Identities=63% Similarity=1.522 Sum_probs=6.8
Q ss_pred cCCCCCCC
Q 030986 106 KPKPARRP 113 (168)
Q Consensus 106 rp~P~rRP 113 (168)
||+|||+|
T Consensus 10 rpkpgRKp 17 (17)
T PF10297_consen 10 RPKPGRKP 17 (17)
T ss_pred CCCCCCCC
Confidence 78999986
No 3
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=37.48 E-value=24 Score=40.03 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=26.7
Q ss_pred CCCCchHHHHHHhhhhcCCCCCCCCCcCCCCCCCC
Q 030986 134 PPEEDEEEEEKKEEEEENPDKEDPDKEESGNSNSQ 168 (168)
Q Consensus 134 P~~edeEeeE~k~eeeedp~ke~~d~p~k~~~~~~ 168 (168)
+++-|++|+|..+|+++|--.+++-+||-++.|+|
T Consensus 3945 ~ed~d~q~~~de~e~~ddvg~ddeiq~d~~en~~~ 3979 (4600)
T COG5271 3945 LEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979 (4600)
T ss_pred ccccchhhhcchhhhccccCcccccCcchhcccCC
Confidence 45666666666666777888888889999988886
No 4
>PF15364 PAXIP1_C: PAXIP1-associated-protein-1 C term PTIP binding protein
Probab=28.87 E-value=68 Score=25.84 Aligned_cols=10 Identities=50% Similarity=1.405 Sum_probs=7.0
Q ss_pred cccccCCCCCCC
Q 030986 102 IEWEKPKPARRP 113 (168)
Q Consensus 102 ~Ew~rp~P~rRP 113 (168)
.+|+ -|||||
T Consensus 39 L~w~--~pgRR~ 48 (141)
T PF15364_consen 39 LQWK--CPGRRP 48 (141)
T ss_pred eeee--cCCCCC
Confidence 4555 579998
No 5
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=23.24 E-value=32 Score=31.21 Aligned_cols=9 Identities=11% Similarity=0.490 Sum_probs=4.8
Q ss_pred CCCcccccc
Q 030986 98 LDFPIEWEK 106 (168)
Q Consensus 98 lDfP~Ew~r 106 (168)
-+|...|.+
T Consensus 247 ~~y~~y~~~ 255 (314)
T PF06524_consen 247 SGYGSYWKN 255 (314)
T ss_pred ccccchhcc
Confidence 345555555
No 6
>COG4425 Predicted membrane protein [Function unknown]
Probab=22.18 E-value=88 Score=30.53 Aligned_cols=88 Identities=27% Similarity=0.482 Sum_probs=51.2
Q ss_pred ccccCCCcccc-----ccccCCCCCCcccccCcCcCCCCCCCcCCCcccceeeeec--ccccchhhhhhhccccceeeeC
Q 030986 14 TLAFAPPHAAK-----MTSSSASTSHSCSCSMESVPNFSSNRLIPNNRMAQTLVVP--QFGFTRVIRYNQRAKRQVVRMA 86 (168)
Q Consensus 14 pL~~~PP~sa~-----~~~~sas~s~Sc~~s~~s~p~F~s~rl~~~~~~~~~~V~p--~fgf~r~~~~~~R~~~~vv~~a 86 (168)
-|.++||..+. +++|.++++ +-.|-|-+||.|--..-+..+-+| ..|+-|-. +.--|
T Consensus 428 aLwSGppf~s~~w~slt~~R~agSp-------ewLPr~~dg~~IRF~~q~~~l~~Pga~Wg~~RiV---------ylQ~A 491 (588)
T COG4425 428 ALWSGPPFNSTLWNSLTADRDAGSP-------EWLPRYDDGRNIRFANQARDLDMPGAPWGPPRIV---------YLQHA 491 (588)
T ss_pred ceecCCCCCcHHHHHHhccCCCCCc-------hhcceecCCceeeeccCcccccCCCCCCCCceEE---------EEecc
Confidence 57788998776 455554432 456888888888666655566555 23333322 23344
Q ss_pred chhhh-hhccCCCCCccccccCCCCCCCCCCCCCC
Q 030986 87 PEEEK-LTRRSPLDFPIEWEKPKPARRPDIFPQFS 120 (168)
Q Consensus 87 Pe~Ek-~t~rSplDfP~Ew~rp~P~rRPDifP~f~ 120 (168)
-|+-+ -+-|+=+.=| +|.++. |-||+||++.
T Consensus 492 SDPIt~~~~~~lyReP-dWlk~p--rgpDVsp~lR 523 (588)
T COG4425 492 SDPITWWDPRLLYREP-DWLKPP--RGPDVSPQLR 523 (588)
T ss_pred CCCceeccHHHhccCc-ccccCC--CCCCcCcccc
Confidence 44433 1112211112 677765 8899999987
No 7
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=20.50 E-value=32 Score=33.13 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=3.6
Q ss_pred ccccCcCcC
Q 030986 36 CSCSMESVP 44 (168)
Q Consensus 36 c~~s~~s~p 44 (168)
|+.+-.+.|
T Consensus 235 ~i~~~lsl~ 243 (548)
T PF02459_consen 235 CIVSALSLP 243 (548)
T ss_pred HHHHHhhCC
Confidence 444433333
No 8
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=18.44 E-value=41 Score=30.52 Aligned_cols=31 Identities=35% Similarity=0.725 Sum_probs=0.0
Q ss_pred CCCCCCchHHHHHHhhhhcCCCCCCCCCcCC
Q 030986 132 CDPPEEDEEEEEKKEEEEENPDKEDPDKEES 162 (168)
Q Consensus 132 ~DP~~edeEeeE~k~eeeedp~ke~~d~p~k 162 (168)
.|..++|+++++..+++++|.+.|+.|..+.
T Consensus 273 ~ddd~~d~d~d~d~eed~~d~~~e~~de~~~ 303 (314)
T PF06524_consen 273 DDDDDDDEDDDEDDEEDEDDEEEEEEDEEEE 303 (314)
T ss_pred ccccccccccccccccccccccccccccccc
No 9
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=18.25 E-value=40 Score=29.57 Aligned_cols=49 Identities=37% Similarity=0.674 Sum_probs=0.0
Q ss_pred hhhccccceeeeCchhhh--hhccCCCCCccccccCCC---CCCCCCCCCCCCCCCCCCCC
Q 030986 74 YNQRAKRQVVRMAPEEEK--LTRRSPLDFPIEWEKPKP---ARRPDIFPQFSPMKTPLPPP 129 (168)
Q Consensus 74 ~~~R~~~~vv~~aPe~Ek--~t~rSplDfP~Ew~rp~P---~rRPDifP~f~p~ktplP~p 129 (168)
+++|++...+ |+++ ..+|-|+=|+.|.+-.+| ++.|=|. +.=|.|||+|
T Consensus 171 rrkR~GK~~~----ee~~~f~~KGiPvIF~dElee~kp~~~~~~P~Il---keEkPPl~pp 224 (290)
T PF05454_consen 171 RRKRKGKMSL----EEQKTFISKGIPVIFQDELEESKPEPGSKSPVIL---KEEKPPLPPP 224 (290)
T ss_dssp -------------------------------------------------------------
T ss_pred hhhhcccccc----chhHHHHhcCCceeccccccccCCCCCCCCCeee---cccCCCCCCC
No 10
>PF04317 DUF463: YcjX-like family, DUF463; InterPro: IPR007413 Some members of this family are thought to possess an ATP-binding domain towards their N terminus.
Probab=15.75 E-value=1e+02 Score=28.95 Aligned_cols=62 Identities=26% Similarity=0.484 Sum_probs=0.0
Q ss_pred cCCC---CCCCcCCCccccee-eeecccccchhhhhhhccc-------------cceeeeCchhhhhhccCC--------
Q 030986 43 VPNF---SSNRLIPNNRMAQT-LVVPQFGFTRVIRYNQRAK-------------RQVVRMAPEEEKLTRRSP-------- 97 (168)
Q Consensus 43 ~p~F---~s~rl~~~~~~~~~-~V~p~fgf~r~~~~~~R~~-------------~~vv~~aPe~Ek~t~rSp-------- 97 (168)
.|.| .+|||++.....|. .-||+|.+-..++-....+ +..++.-|..--...-.+
T Consensus 33 LP~f~~~~~gRl~~a~~~pq~d~~vPrF~Ye~~l~aL~~~~P~WP~sTr~iSelRL~iry~~~~~l~~~~~~~~tL~LDi 112 (443)
T PF04317_consen 33 LPLFSAAREGRLLGAKLQPQPDDAVPRFDYEEHLAALTGDPPHWPESTRGISELRLAIRYRPASGLRRHLGPTRTLYLDI 112 (443)
T ss_pred CccccccccCceeeeEeccCCCCCCCCCChHHHHHHhcCCCCCCCCCCCcceEEEEEEEEeccccHHHhcCCCceEEEEe
Q ss_pred CCCcccc
Q 030986 98 LDFPIEW 104 (168)
Q Consensus 98 lDfP~Ew 104 (168)
+|||-||
T Consensus 113 vDYPGEW 119 (443)
T PF04317_consen 113 VDYPGEW 119 (443)
T ss_pred ecCCcHH
Done!