Query 030986
Match_columns 168
No_of_seqs 19 out of 21
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 11:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4p_A Proteasome subunit alph 32.5 11 0.00037 29.8 0.4 13 135-147 245-257 (264)
2 3izc_t 60S acidic ribosomal pr 17.4 27 0.00094 25.3 0.0 21 131-151 79-99 (106)
3 3iz5_t 60S acidic ribosomal pr 15.3 33 0.0011 25.1 0.0 17 135-151 87-103 (110)
4 3peh_A Endoplasmin homolog; st 11.7 66 0.0023 26.7 0.8 28 138-165 239-266 (281)
5 3cx5_F Cytochrome B-C1 complex 11.0 57 0.002 25.5 0.2 26 135-160 51-76 (146)
6 1qy5_A Endoplasmin; GRP94, NEC 10.6 56 0.0019 26.4 0.0 32 134-165 224-255 (269)
7 3bbo_G Ribosomal protein L4; l 8.7 74 0.0025 26.8 0.0 28 137-164 265-292 (293)
8 4afx_A Protein Z dependent pro 8.4 51 0.0017 27.4 -1.1 20 133-152 23-45 (387)
9 1fhg_A Telokin; immunoglobulin 7.7 92 0.0031 20.7 0.2 20 126-145 135-154 (154)
10 4ajt_A Protein Z-dependent pro 7.4 75 0.0026 26.9 -0.5 20 133-152 31-50 (427)
No 1
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=32.52 E-value=11 Score=29.76 Aligned_cols=13 Identities=54% Similarity=0.831 Sum_probs=1.2
Q ss_pred CCCchHHHHHHhh
Q 030986 135 PEEDEEEEEKKEE 147 (168)
Q Consensus 135 ~~edeEeeE~k~e 147 (168)
+++|++|||.|+|
T Consensus 245 ~~~~~~~~~~~~~ 257 (264)
T 3h4p_A 245 NEENKKEEENREE 257 (264)
T ss_dssp SCC----------
T ss_pred hcchhhhhhhhhh
Confidence 3444444444444
No 2
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=17.44 E-value=27 Score=25.34 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCchHHHHHHhhhhcC
Q 030986 131 PCDPPEEDEEEEEKKEEEEEN 151 (168)
Q Consensus 131 P~DP~~edeEeeE~k~eeeed 151 (168)
.+..+.+++++||+|||++||
T Consensus 79 ~~a~~~~~~~kee~~EEsddD 99 (106)
T 3izc_t 79 EAGEAEAEKEEEEAKEESDDD 99 (106)
T ss_dssp ---------------------
T ss_pred ccccchhhhhhcccccccccc
No 3
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=15.30 E-value=33 Score=25.09 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=0.0
Q ss_pred CCCchHHHHHHhhhhcC
Q 030986 135 PEEDEEEEEKKEEEEEN 151 (168)
Q Consensus 135 ~~edeEeeE~k~eeeed 151 (168)
+.++|+++|++||+.||
T Consensus 87 ~~~~e~k~ee~EEsddD 103 (110)
T 3iz5_t 87 EKKEEKKEEAKEESDDD 103 (110)
T ss_dssp -----------------
T ss_pred chhhhhccccccccccc
No 4
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=11.75 E-value=66 Score=26.67 Aligned_cols=28 Identities=0% Similarity=0.036 Sum_probs=0.0
Q ss_pred chHHHHHHhhhhcCCCCCCCCCcCCCCC
Q 030986 138 DEEEEEKKEEEEENPDKEDPDKEESGNS 165 (168)
Q Consensus 138 deEeeE~k~eeeedp~ke~~d~p~k~~~ 165 (168)
.++|+|++++++++++.|+.+..++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~e~~~~~~~~~k 266 (281)
T 3peh_A 239 LADIAKDMVNDPNYDSVKVEETDDPNKK 266 (281)
T ss_dssp EHHHHHHHTTCTTSSEEEECCCCCTTCC
T ss_pred CcchhhhccccccccccccccccccccC
No 5
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=11.04 E-value=57 Score=25.45 Aligned_cols=26 Identities=23% Similarity=0.670 Sum_probs=0.0
Q ss_pred CCCchHHHHHHhhhhcCCCCCCCCCc
Q 030986 135 PEEDEEEEEKKEEEEENPDKEDPDKE 160 (168)
Q Consensus 135 ~~edeEeeE~k~eeeedp~ke~~d~p 160 (168)
..+++++++..++++++.+.|+.-+|
T Consensus 51 ~~~ee~eeeeeeeeeeeeeEEE~vDP 76 (146)
T 3cx5_F 51 EDEDEDEDDDDDDDEDEEEEEEVTDQ 76 (146)
T ss_dssp ----------------------CCCH
T ss_pred ccccccccccccccccccccccccCh
No 6
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=10.63 E-value=56 Score=26.40 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHhhhhcCCCCCCCCCcCCCCC
Q 030986 134 PPEEDEEEEEKKEEEEENPDKEDPDKEESGNS 165 (168)
Q Consensus 134 P~~edeEeeE~k~eeeedp~ke~~d~p~k~~~ 165 (168)
..+++|+++++++++++.++-+++++.++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 255 (269)
T 1qy5_A 224 PMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKT 255 (269)
T ss_dssp --------------------------------
T ss_pred CccchhhhhhcccccccccccccccccccccC
No 7
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=8.66 E-value=74 Score=26.85 Aligned_cols=28 Identities=43% Similarity=0.511 Sum_probs=0.0
Q ss_pred CchHHHHHHhhhhcCCCCCCCCCcCCCC
Q 030986 137 EDEEEEEKKEEEEENPDKEDPDKEESGN 164 (168)
Q Consensus 137 edeEeeE~k~eeeedp~ke~~d~p~k~~ 164 (168)
|++|++|+.+|+.++-+.++.+.-..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
T 3bbo_G 265 EDEDEEEEEEEEGEEVDDGVEDGTPEPA 292 (293)
T ss_dssp ----------------------------
T ss_pred cccccchhhhccccccccccccCCCCCC
No 8
>4afx_A Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_A 3h5c_A* 3f1s_A*
Probab=8.45 E-value=51 Score=27.38 Aligned_cols=20 Identities=55% Similarity=0.843 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHhh---hhcCC
Q 030986 133 DPPEEDEEEEEKKEE---EEENP 152 (168)
Q Consensus 133 DP~~edeEeeE~k~e---eeedp 152 (168)
+|.+++|||+|+.+| .|+||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~ 45 (387)
T 4afx_A 23 APKEEEEDEQEASEEKASEEEKA 45 (387)
T ss_dssp -----------------CHHHHH
T ss_pred CCcccchhhhhhcccccccccCc
No 9
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=7.73 E-value=92 Score=20.72 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCchHHHHHH
Q 030986 126 LPPPLPCDPPEEDEEEEEKK 145 (168)
Q Consensus 126 lP~plP~DP~~edeEeeE~k 145 (168)
.|+..++.++.+++|+||+.
T Consensus 135 ~p~~~~~~~~g~~~~~~~~~ 154 (154)
T 1fhg_A 135 MGKEGEGEGEGEEDEEEEEE 154 (154)
T ss_dssp C-------------------
T ss_pred cCcCCCCCCCCCcccccccC
No 10
>4ajt_A Protein Z-dependent protease inhibitor; blood clotting, ZPI; 2.50A {Mus musculus}
Probab=7.36 E-value=75 Score=26.87 Aligned_cols=20 Identities=60% Similarity=0.863 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHhhhhcCC
Q 030986 133 DPPEEDEEEEEKKEEEEENP 152 (168)
Q Consensus 133 DP~~edeEeeE~k~eeeedp 152 (168)
+|.+++|||+|+.+-.+|++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~ 50 (427)
T 4ajt_A 31 DPREEEEEEEEKEEGKDEEY 50 (427)
T ss_dssp ----------------CCTH
T ss_pred CCcccchhhhcccccccccc
Done!