BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030987
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
Length = 793
Score = 30.4 bits (67), Expect = 0.51, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 570 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 628
>pdb|4GFH|F Chain F, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1099
Score = 30.4 bits (67), Expect = 0.51, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 936 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 994
>pdb|4GFH|A Chain A, Topoisomerase Ii-Dna-Amppnp Complex
Length = 1103
Score = 30.4 bits (67), Expect = 0.51, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 940 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 998
>pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
Length = 722
Score = 30.4 bits (67), Expect = 0.51, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 559 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 617
>pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna
Length = 759
Score = 30.4 bits (67), Expect = 0.51, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 560 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 618
>pdb|3QFI|A Chain A, X-Ray Crystal Structure Of Transcriptional Regulator
(Ef0465) From Enterococcus Faecalis, Northeast
Structural Genomics Consortium Target Efr190
Length = 301
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 77 VQRSENFAGISALRSIYDAIPANVKENL 104
V++ +F G+S R I DA+ ANVK +L
Sbjct: 181 VRKVMSFDGVSKYRKILDAVEANVKTDL 208
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 13 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 67
Query: 99 NVKENLQAVYFVHPGLQ 115
+ KE + +H L
Sbjct: 68 HQKEKMSTEIAIHKSLD 84
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 29 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 83
Query: 99 NVKENLQAVYFVHPGLQ 115
+ KE + +H L
Sbjct: 84 HQKEKMSTEIAIHKSLD 100
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 29 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 83
Query: 99 NVKENLQAVYFVHPGLQ 115
+ KE + +H L
Sbjct: 84 HQKEKMSTEIAIHKSLD 100
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 39 KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
K P L+ +KRY+ R LGK F Y T + E FAG +S+ +
Sbjct: 29 KEIPDVLVDPRTMKRYMRGRF---LGKGGFAKCYEITDMDTKEVFAGKVVPKSML--LKP 83
Query: 99 NVKENLQAVYFVHPGLQ 115
+ KE + +H L
Sbjct: 84 HQKEKMSTEIAIHKSLD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.332 0.146 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,915,375
Number of Sequences: 62578
Number of extensions: 132784
Number of successful extensions: 289
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 14
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)