BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030987
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura
GN=GA15091 PE=3 SV=1
Length = 542
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
G D+ GR ++ GK+FPA+ + +E YL + + P + K + + Y HT + + N+
Sbjct: 390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 447
Query: 85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFY 144
+ LR +Y +P K+NL+A Y VHP ++ F + V LP
Sbjct: 448 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLPGVEHL 507
Query: 145 Y 145
Y
Sbjct: 508 Y 508
>sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2
SV=1
Length = 540
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
G D+ GR ++ GK+FPA+ + +E YL + + P + K + + Y HT + + N+
Sbjct: 388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 445
Query: 85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPFFNFY 144
+ LR +Y +P K+NL+A Y VHP ++ F + V LP
Sbjct: 446 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLPGVEHL 505
Query: 145 Y 145
Y
Sbjct: 506 Y 506
>sp|Q54TH9|GACY_DICDI Rho GTPase-activating protein gacY OS=Dictyostelium discoideum
GN=gacY PE=3 SV=1
Length = 721
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 7 SESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK 66
S+S++ I+ L G+D GR I+ II P R + +E + Y + P + ++
Sbjct: 362 SKSQRFPEIEALNFIYPAGKDNLGRTIIVIIASHLPVREMDMERVLLYTISIMDPVV-EE 420
Query: 67 AFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
+ ++YVHT + S N ++ ++ +Y K+NL+ +Y VHP + L F
Sbjct: 421 EYVLVYVHTNMNNS-NKPSMAWMKKVYTIFNRKYKKNLKGLYIVHPTTWIKFTLGIF 476
>sp|Q5FWK3|RHG01_MOUSE Rho GTPase-activating protein 1 OS=Mus musculus GN=Arhgap1 PE=1
SV=1
Length = 439
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 15 IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
I R +I ++ G DK GRKI+ + P+ L L YL + + + +T+LY+
Sbjct: 67 IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL-KHTLDQYVESDYTLLYL 125
Query: 74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
H G+ S+N +S LR Y K+N++A+Y VHP + + L F L
Sbjct: 126 HHGL-TSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPL 177
>sp|Q07960|RHG01_HUMAN Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1
SV=1
Length = 439
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 15 IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
I R +I ++ G DK GRKI+ + P+ L L YL + + + +T+LY+
Sbjct: 67 IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYL-KHTLDQYVESDYTLLYL 125
Query: 74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
H G+ S+N +S LR Y K+N++A+Y VHP + + L F L
Sbjct: 126 HHGL-TSDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPL 177
>sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associated protein 2 OS=Mus
musculus GN=Gdap2 PE=2 SV=1
Length = 498
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 8 ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
++ E+L D L+ G D GR ++ ++G+ P L+ ++ Y V +
Sbjct: 326 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 384
Query: 66 KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
K + ++Y HT + N L+ +YD + K NL+AVYFVHP ++++ F T
Sbjct: 385 KEYVLVYFHT-LTSDYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTT 443
Query: 123 FG 124
F
Sbjct: 444 FS 445
>sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associated protein 2 OS=Bos
taurus GN=GDAP2 PE=2 SV=1
Length = 497
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 8 ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
++ E+L D L+ G D GR ++ ++G+ P L+ ++ Y V +
Sbjct: 325 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 383
Query: 66 KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
K + ++Y HT + N L+ +YD + K NL+AVYFVHP ++++ F T
Sbjct: 384 KEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTT 442
Query: 123 FG 124
F
Sbjct: 443 FS 444
>sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associated protein 2 OS=Xenopus
tropicalis PE=2 SV=1
Length = 496
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 6 VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
+S + E+L D L+ G D GR ++ ++G+ P L+ +E Y + +
Sbjct: 322 LSRARTEDLSDIAALKALYQSGVDNCGRTVMVVVGRNIPVLLIDMEKALLYFI-HMMDHV 380
Query: 64 GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
K + ++Y HT + N L+++YD + K+NL+A+YFVHP ++++ F
Sbjct: 381 AAKEYVLVYFHT-LTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFF 439
Query: 121 ATF 123
TF
Sbjct: 440 TTF 442
>sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associated protein 2 OS=Homo
sapiens GN=GDAP2 PE=2 SV=1
Length = 497
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 8 ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
++ E+L D L+ G D GR ++ ++G+ P L+ ++ Y V +
Sbjct: 325 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 383
Query: 66 KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
K + ++Y HT + N L+ +YD + K NL+AVYFVHP ++++ F T
Sbjct: 384 KEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTT 442
Query: 123 FG 124
F
Sbjct: 443 FS 444
>sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associated protein 2 OS=Xenopus
laevis PE=2 SV=1
Length = 496
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 6 VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
+S + E+L D L+ G D GR ++ ++G+ P L+ +E Y + +
Sbjct: 322 LSRARTEDLSDIAALKALYQSGVDNCGRSVMVVVGRNIPVLLIDMEKALLYFI-HMMDHV 380
Query: 64 GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
K + ++Y HT + N L+++YD I K+NL+A+YFVHP ++++ F
Sbjct: 381 TAKDYVLVYFHT-LTGEHNHLDSDFLKNMYDIIDVKYKKNLKALYFVHPTFRSKVSTWFF 439
Query: 121 ATF 123
TF
Sbjct: 440 TTF 442
>sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associated protein 2 OS=Macaca
fascicularis GN=GDAP2 PE=2 SV=1
Length = 461
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 8 ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
++ E+L D L+ G D GR ++ ++G+ P L+ ++ Y V +
Sbjct: 289 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 347
Query: 66 KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
K + ++Y HT + N L+ +YD + K NL+AVYFVHP ++++ F T
Sbjct: 348 KEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTT 406
Query: 123 FG 124
F
Sbjct: 407 FS 408
>sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associated-protein 2 OS=Rattus
norvegicus GN=Gdap2 PE=2 SV=1
Length = 497
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 8 ESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
++ E+L D L+ G D GR ++ ++G+ P L+ ++ Y V +
Sbjct: 325 QARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAV 383
Query: 66 KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLAT 122
K + ++Y HT + N L+ +YD + K NL+AVYFVHP ++++ F T
Sbjct: 384 KEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTT 442
Query: 123 FG 124
F
Sbjct: 443 FS 444
>sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associated protein 2 OS=Danio
rerio GN=gdap2 PE=2 SV=1
Length = 504
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
G D GR ++ ++G+ P L+ +E Y V + K + ++Y HT + N
Sbjct: 353 GVDLCGRTVMVVVGRNIPVMLIDMEKALLYFI-HVMDHITVKEYVMVYFHT-LTGEHNHL 410
Query: 85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFG 124
L+ +YD + A K+NL+A YFVHP ++++ F TF
Sbjct: 411 DTDFLKKLYDIVDAKFKKNLRAFYFVHPTFRSKVSTWFFTTFS 453
>sp|Q9CXP4|RHG08_MOUSE Rho GTPase-activating protein 8 OS=Mus musculus GN=Arhgap8 PE=2
SV=3
Length = 425
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 15 IDRLEIFKIHGRDKQGRKI-------LRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKA 67
+ R I ++ G D+QGR+I L + + RLL E LK L + V +
Sbjct: 17 VARHGILQVAGDDRQGRRIFTFSCCRLPPLHQLNHQRLL--EYLKYTLDQHV-----END 69
Query: 68 FTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLF 127
+T++Y H G+ S+N + L++ Y K+NL+A+Y VHP + F L
Sbjct: 70 YTIVYFHYGLS-SQNKPSLGWLQNTYKEFDRKYKKNLKALYVVHPTSLIKALWNIFKPLI 128
Query: 128 FNGVGGYVSLLPFFNFYYCFNL 149
+ G V+ YC NL
Sbjct: 129 SHKFGKKVT--------YCSNL 142
>sp|Q9VTU3|RG68F_DROME Rho GTPase-activating protein 68F OS=Drosophila melanogaster
GN=RhoGAP68F PE=1 SV=1
Length = 476
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
G DKQGR I I FP + +E R + + + P + + ++Y H G+ + +N
Sbjct: 105 GTDKQGRHIFGIYASRFPEKS-QLEGFVREIIKEIEP-FVENDYILVYFHQGL-KEDNKP 161
Query: 85 GISALRSIYDAIPANVKENLQAVYFVHP 112
L + Y + N ++NL+ +Y VHP
Sbjct: 162 SAQFLWNSYKELDRNFRKNLKTLYVVHP 189
>sp|A7T167|GDAP2_NEMVE Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1
Length = 502
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 17 RLEIFKIHGRDKQGRKILRIIGKFFPARLLSV-EVLKRYLSERVYPRLGKKAFTVLYVHT 75
R +I G D GR ++ + + F A+ + + + ++S V R+ + + V+Y HT
Sbjct: 338 RQKILYQSGVDFLGRPVVVFVARHFTAQNTDLGKAVAYFIS--VLDRIVNRDYVVVYFHT 395
Query: 76 GVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
EN +S L+ +Y + + NL+A Y VHP + AR+ F TF
Sbjct: 396 H-STEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVWARIVTWFFTTF 445
>sp|Q9CHE0|SYM_LACLA Methionine--tRNA ligase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=metG PE=3 SV=1
Length = 662
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 6 VSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK 65
V E E E D+L FK+ D + R+IL I +F+P E++ + L ++ L
Sbjct: 570 VLEVEPVEGSDKLLRFKLDAGDSEPRQILSGIAQFYPNEQ---ELVGKKL--QIVANLKP 624
Query: 66 KAFTVLYVHTGVQRSENFAGISALRSIYDAIPA 98
+ YV G+ S F G ++ ++ D +PA
Sbjct: 625 RKMMKKYVSQGMILSAEFDGKLSVLTVDDDVPA 657
>sp|Q54PT1|GDAP2_DICDI Protein GDAP2 homolog OS=Dictyostelium discoideum GN=gdap2 PE=3
SV=1
Length = 568
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 5 VVSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPR 62
+++ S+ E+L D RL F + D Q R I+ IIG +R + + YL +
Sbjct: 392 LLTRSKVEDLSDVSRLN-FTLQTTDDQNRPIVVIIGSQLNSRKDLYDQVLLYLIRVLEQT 450
Query: 63 LGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPG--LQARLFL 120
+ + F+++Y H+ + S+ +S L+ + + L+ VHP L+ LF+
Sbjct: 451 IQRGNFSIIYFHSNMS-SQQSPDLSWLKKLLEIFELKYNNYLKDFNIVHPTFLLKTTLFI 509
Query: 121 A 121
+
Sbjct: 510 S 510
>sp|Q30S64|HIS1_SULDN ATP phosphoribosyltransferase OS=Sulfurimonas denitrificans (strain
ATCC 33889 / DSM 1251) GN=hisG PE=3 SV=1
Length = 209
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 28 KQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGIS 87
K K++ I ++F R +SV+++K Y S + P +G V V TG +N G+
Sbjct: 108 KVASKMVNITKRYFEERAVSVDIIKLYGSIELAPLIGLADMIVDVVETGSTMKQN--GLE 165
Query: 88 ALRSI 92
+ I
Sbjct: 166 VVEDI 170
>sp|Q7VJU4|HIS1_HELHP ATP phosphoribosyltransferase OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=hisG PE=3 SV=1
Length = 205
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 28 KQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSEN 82
K K+ I K+F + +S+E LK Y S + P +G V V TGV +N
Sbjct: 108 KIATKMPHITRKYFSNKAISIEALKLYGSIELAPLVGLSDAIVDIVETGVTMKQN 162
>sp|A6Q7C5|HIS1_SULNB ATP phosphoribosyltransferase OS=Sulfurovum sp. (strain NBC37-1)
GN=hisG PE=3 SV=1
Length = 206
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 28 KQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGIS 87
K K++ I +F + + VEV+K Y S + P +G V V TG EN G+
Sbjct: 108 KVATKMVNIAKNYFAQKAVGVEVVKLYGSIELAPLVGLADAIVDIVETGNTMREN--GLK 165
Query: 88 ALRSIYDA 95
I D+
Sbjct: 166 VAEDIMDS 173
>sp|P45444|DYHC_EMENI Dynein heavy chain, cytoplasmic OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudA
PE=3 SV=2
Length = 4345
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 32 KILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAF-TVLYVHTGVQRSENFAGISALR 90
+I G P ++ +++ + L E + P+L ++ T+L + + ++FAG+ +
Sbjct: 2129 RIANSDGDLGPDEIVEPQIIVQSLRETIAPKLVREDVATMLQI-----QEQDFAGVEYVP 2183
Query: 91 SIYDAIPANVKENLQAVYFV 110
+ Y+A+ A ++E + +FV
Sbjct: 2184 ANYEALTAAIREIAREQHFV 2203
>sp|B4U858|HIS1_HYDS0 ATP phosphoribosyltransferase OS=Hydrogenobaculum sp. (strain
Y04AAS1) GN=hisG PE=3 SV=1
Length = 204
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 2 CSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYP 61
CS VV+ + E+L D +KI K K + I FF + +S+ ++K S + P
Sbjct: 90 CSMVVA-GKPEKLGD----YKILHFTKVATKYVNIARSFFEGKDVSINIIKLNGSVEIAP 144
Query: 62 RLGKKAFTVLYVHTGVQRSENFAGISALRSIYDA 95
+G + V TG EN G+ + I+D+
Sbjct: 145 IIGLSDYIVDITQTGKTLKEN--GLIVMEKIFDS 176
>sp|Q2RGV7|HIS1_MOOTA ATP phosphoribosyltransferase OS=Moorella thermoacetica (strain
ATCC 39073) GN=hisG PE=3 SV=1
Length = 228
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 23 IHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSEN 82
+ G + K R+ FF R L VE++K + + + PR G V V TG EN
Sbjct: 118 LAGSRRVATKFPRVAASFFQERGLPVEIIKLHGNIELAPRAGLADLIVDIVSTGRTLKEN 177
>sp|P06786|TOP2_YEAST DNA topoisomerase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TOP2 PE=1 SV=2
Length = 1428
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 21 FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
F HG+ K+ + I+ +F+ RL + K ++SER+ + K +F V ++ +++
Sbjct: 978 FDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEK 1036
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.146 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,156,550
Number of Sequences: 539616
Number of extensions: 2269174
Number of successful extensions: 6673
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6648
Number of HSP's gapped (non-prelim): 28
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)