Query 030987
Match_columns 168
No_of_seqs 116 out of 267
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pg7_A Neurofibromin; SEC lipi 100.0 5.5E-35 1.9E-39 244.4 11.7 131 9-141 1-132 (256)
2 3peg_A Neurofibromin; SEC14 do 100.0 5.5E-30 1.9E-34 217.9 10.8 135 8-144 19-154 (290)
3 1r5l_A Alpha-TTP, protein (alp 99.6 3.6E-15 1.2E-19 121.5 9.7 124 14-139 78-210 (262)
4 3hx3_A Retinaldehyde-binding p 99.6 1E-14 3.5E-19 123.9 9.9 126 11-138 134-268 (316)
5 1aua_A Phosphatidylinositol tr 99.5 5.6E-14 1.9E-18 117.2 6.5 125 14-140 99-242 (296)
6 1olm_A SEC14-like protein 2; l 99.4 1.4E-13 4.8E-18 119.6 7.1 115 23-139 88-221 (403)
7 3q8g_A CRAL-TRIO domain-contai 99.4 3.5E-13 1.2E-17 114.9 6.3 124 14-139 114-256 (320)
8 1c76_A Staphylokinase, SAK; be 59.6 31 0.0011 25.7 6.6 56 21-77 27-85 (136)
9 2lf0_A Uncharacterized protein 53.7 4.2 0.00014 30.1 1.0 16 98-113 88-103 (123)
10 2sak_A Staphylokinase; plasmin 52.0 48 0.0016 24.4 6.5 56 21-77 12-70 (121)
11 2q3l_A Uncharacterized protein 25.0 1.8E+02 0.0061 20.3 6.7 80 46-131 33-112 (126)
No 1
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=100.00 E-value=5.5e-35 Score=244.41 Aligned_cols=131 Identities=16% Similarity=0.122 Sum_probs=121.5
Q ss_pred hhhHhHHHhcCCEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCcccccCcccHHH
Q 030987 9 SEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISA 88 (168)
Q Consensus 9 ~e~~~di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~~~~~n~P~~~w 88 (168)
.|||+||++++++|++|.|++||||+|++||++|++.+|+|.|+.|++ ++++++.+++|++||+||++ +.+|.|+.+|
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl-~tl~~~~~~~y~lV~d~T~~-~~~n~p~~~w 78 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVL-LTLKPYYAKPYEIVVDLTHT-GPSNRFKTDF 78 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHH-HHHTTTTTSCEEEEEECTTC-CGGGCCCHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHH-HHHHHhcCCCeEEEEECCCC-CcccCCcHHH
Confidence 389999999999999999999999999999999998899999999999 57999999999999999999 6899999999
Q ss_pred HHHHHHhcChhhhhccceEEEEcCChHHHHHHHH-hchhhcccccccceecCce
Q 030987 89 LRSIYDAIPANVKENLQAVYFVHPGLQARLFLAT-FGRLFFNGVGGYVSLLPFF 141 (168)
Q Consensus 89 L~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~-~~pFissk~~~kv~~l~~~ 141 (168)
|+++|+.+|++++|||+++|+||||+|+|.+++. .++|.++++++|++.+..+
T Consensus 79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl 132 (256)
T 3pg7_A 79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP 132 (256)
T ss_dssp HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST
T ss_pred HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH
Confidence 9999999999999999999999999999987766 4666777999999966554
No 2
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.96 E-value=5.5e-30 Score=217.94 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=120.6
Q ss_pred hhhhHhHHHhcCCEEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCcccccCcccHH
Q 030987 8 ESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGIS 87 (168)
Q Consensus 8 ~~e~~~di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~~~~~n~P~~~ 87 (168)
..|++++|++.+++|++|.|++||||||+++|++|....|+|.++.|++ ++++++.+++|++|||||+. +.+|.|+.+
T Consensus 19 ~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il-~tl~~~~~~~y~lV~D~T~~-~~~n~p~~~ 96 (290)
T 3peg_A 19 EKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVL-LTLKPYYAKPYEIVVDLTHT-GPSNRFKTD 96 (290)
T ss_dssp -----CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHH-HHHTTTTTSCEEEEEECTTC-CGGGCCCHH
T ss_pred ChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHH-HHHHHhcCCCeEEEEEcCCC-CccCCChHH
Confidence 4578999999999999999999999999999999998899999999999 56999999999999999999 689999999
Q ss_pred HHHHHHHhcChhhhhccceEEEEcCChHHHHHHH-HhchhhcccccccceecCceeee
Q 030987 88 ALRSIYDAIPANVKENLQAVYFVHPGLQARLFLA-TFGRLFFNGVGGYVSLLPFFNFY 144 (168)
Q Consensus 88 wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~-~~~pFissk~~~kv~~l~~~~~~ 144 (168)
|++++|+.+|++|+|||+++|+||||+|+|.+++ .+++|.+.++.+|+..++..+.+
T Consensus 97 ~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L 154 (290)
T 3peg_A 97 FLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKL 154 (290)
T ss_dssp HHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC-
T ss_pred HHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHH
Confidence 9999999999999999999999999999999774 67888999999999876655444
No 3
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.59 E-value=3.6e-15 Score=121.52 Aligned_cols=124 Identities=7% Similarity=0.080 Sum_probs=101.2
Q ss_pred HHHhcCCE-EEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCC------CCeEEEEEcCCcccccCc--c
Q 030987 14 LIDRLEIF-KIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF--A 84 (168)
Q Consensus 14 di~~~~il-y~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~------~~yvlVy~htg~~~~~n~--P 84 (168)
++-+.|.. +..|+|++||||+++-...+.++..+.+.++++.+ .++|.... +.+++|++.+|. +..+. +
T Consensus 78 ~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~-~~~E~~~~~~~~~~~g~~~I~D~~g~-s~~~~~~~ 155 (262)
T 1r5l_A 78 GLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSL-ITSELIVQEVETQRNGIKAIFDLEGW-QFSHAFQI 155 (262)
T ss_dssp HHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHH-HHHHHHTTSHHHHHHCEEEEEECTTC-CHHHHHHC
T ss_pred HHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHH-HHHHHHHhChhhcccceEEEEECCCC-CHHHHhcc
Confidence 33456654 45699999999999999877666567777777766 34554332 358999999999 45553 4
Q ss_pred cHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecC
Q 030987 85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLP 139 (168)
Q Consensus 85 ~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~ 139 (168)
+.+.++++.+.++..|+++|+++|||||+++++++|++++||++++..+||+.+.
T Consensus 156 ~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~ 210 (262)
T 1r5l_A 156 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG 210 (262)
T ss_dssp CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECC
T ss_pred CHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeC
Confidence 6789999999999999999999999999999999999999999999999999764
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.56 E-value=1e-14 Score=123.85 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=102.9
Q ss_pred hHhHHHhcCC-EEEeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHhhcCcCCC------CCeEEEEEcCCcccccCc
Q 030987 11 QEELIDRLEI-FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF 83 (168)
Q Consensus 11 ~~~di~~~~i-ly~~G~D~~GrPVvV~~a~~lP~~~~d~e~ll~Yvv~~~Ld~~~~------~~yvlVy~htg~~~~~n~ 83 (168)
+..++-+.|. .+..|.|++||||+++-..++..+..+.++++++++ .++|.... +.+++|++.+|. +..+.
T Consensus 134 ~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~-~~lE~~l~~~~~~v~g~v~IiD~~g~-sl~~~ 211 (316)
T 3hx3_A 134 AVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYC-FILEKLLENEETQINGFCIIENFKGF-TMQQA 211 (316)
T ss_dssp HHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHH-HHHHHHTTSHHHHHHCEEEEEECTTC-CHHHH
T ss_pred HHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHH-HHHHHHHhcccCCcceEEEEEECCCC-CHHHh
Confidence 4444445666 455699999999999998777666677888888887 45664433 479999999999 44443
Q ss_pred --ccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceec
Q 030987 84 --AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLL 138 (168)
Q Consensus 84 --P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l 138 (168)
.+.+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+-.
T Consensus 212 ~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~ 268 (316)
T 3hx3_A 212 ASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVH 268 (316)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEE
T ss_pred ccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEe
Confidence 3567899999999999999999999999999999999999999999999999854
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.46 E-value=5.6e-14 Score=117.17 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=97.7
Q ss_pred HHHhcCCEEEeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHhhcCcC--------------CCCCeEEEEEcC
Q 030987 14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL--------------GKKAFTVLYVHT 75 (168)
Q Consensus 14 di~~~~ily~~G~D~~GrPVvV~~a~~lP~~----~~d~e~ll~Yvv~~~Ld~~--------------~~~~yvlVy~ht 75 (168)
.+.+....+..|.|++||||+++-..++..+ ..+.++++++++ ..++.+ ..+..++|++.+
T Consensus 99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~-~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~ 177 (296)
T 1aua_A 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLV-WEYESVVQYRLPACSRAAGHLVETSCTIMDLK 177 (296)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHH-HHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence 3444333456799999999999987766432 246777777665 223321 245699999999
Q ss_pred CcccccCccc-HHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecCc
Q 030987 76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLPF 140 (168)
Q Consensus 76 g~~~~~n~P~-~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~~ 140 (168)
|. +..+.+. .+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+.+..
T Consensus 178 g~-s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~ 242 (296)
T 1aua_A 178 GI-SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS 242 (296)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc
Confidence 99 5566654 5788999999999999999999999999999999999999999999999996643
No 6
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.43 E-value=1.4e-13 Score=119.55 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=96.4
Q ss_pred EeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHhhcCcC-------------CCCCeEEEEEcCCcccccCc--
Q 030987 23 IHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL-------------GKKAFTVLYVHTGVQRSENF-- 83 (168)
Q Consensus 23 ~~G~D~~GrPVvV~~a~~lP~~----~~d~e~ll~Yvv~~~Ld~~-------------~~~~yvlVy~htg~~~~~n~-- 83 (168)
..|.|++||||+++....+..+ ..+.++++++++ .++|.. ..+.+++|++.+|. +..+.
T Consensus 88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~-~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~-sl~~~~~ 165 (403)
T 1olm_A 88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKM-RECELLLQECAHQTTKLGRKVETITIIYDCEGL-GLKHLWK 165 (403)
T ss_dssp EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTC-CGGGGCH
T ss_pred eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHH-HHHHHHHHHHHhhHHhhCCcccceEEEEECCCC-CHHHHhh
Confidence 4699999999999998776443 356778888776 345432 13679999999998 44454
Q ss_pred ccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecC
Q 030987 84 AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLP 139 (168)
Q Consensus 84 P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~ 139 (168)
|..+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+.+.
T Consensus 166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~ 221 (403)
T 1olm_A 166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG 221 (403)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC
T ss_pred HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEC
Confidence 57889999999999999999999999999999999999999999999999999764
No 7
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.38 E-value=3.5e-13 Score=114.94 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=97.6
Q ss_pred HHHhcCCEEEeccCCCCCeEEEEEeecCCCCC----CCHHHHHHHHHHhhcCc--------------CCCCCeEEEEEcC
Q 030987 14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSERVYPR--------------LGKKAFTVLYVHT 75 (168)
Q Consensus 14 di~~~~ily~~G~D~~GrPVvV~~a~~lP~~~----~d~e~ll~Yvv~~~Ld~--------------~~~~~yvlVy~ht 75 (168)
.+.+....+..|+|++||||+++-...+..+. .+.++++++++ ..+|. ...+..++|++.+
T Consensus 114 ~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv-~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~ 192 (320)
T 3q8g_A 114 KLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLV-KEYELFATYRVPACSRRAGYLIETSCTVLDLK 192 (320)
T ss_dssp HHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHH-HHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred HHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHH-HHHHHHHHHhhhHHHHhcCCCcceeEEEEECC
Confidence 45566667778999999999999987664332 25566666554 22222 1235678999999
Q ss_pred CcccccCccc-HHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhchhhcccccccceecC
Q 030987 76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGYVSLLP 139 (168)
Q Consensus 76 g~~~~~n~P~-~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~pFissk~~~kv~~l~ 139 (168)
|. +-.+.+. .+.++++.+.++..|+++|++++|||++++++++|++++||++++..+||+.+.
T Consensus 193 g~-sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~ 256 (320)
T 3q8g_A 193 GI-SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILG 256 (320)
T ss_dssp TC-CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeC
Confidence 98 5556543 678899999999999999999999999999999999999999999999998664
No 8
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=59.63 E-value=31 Score=25.73 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=41.7
Q ss_pred EEEeccCCCCCeEEE--EEeecC-CCCCCCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCc
Q 030987 21 FKIHGRDKQGRKILR--IIGKFF-PARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGV 77 (168)
Q Consensus 21 ly~~G~D~~GrPVvV--~~a~~l-P~~~~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~ 77 (168)
+-+-|+|..|+-|+. ..--++ |....+-|.++.|+. .++|..+.++|-+|=|+.++
T Consensus 27 iNVTGvD~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ-~~idas~~~~f~vV~~~e~a 85 (136)
T 1c76_A 27 VNVTGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVE-WALDATAYKEFRVVELDPSA 85 (136)
T ss_dssp EEEEEECTTCCEEECCCCEEEECCTTCEECHHHHHHHHH-HHHTTSTTTTEEEEEECTTC
T ss_pred EEEeeecCCCCEEeccccEEEecCcCceecHHHHHHHHH-HHhhhhhcCceEEEecCCCc
Confidence 345699999998772 112233 335578999999998 56999999999999888775
No 9
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=53.71 E-value=4.2 Score=30.07 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.0
Q ss_pred hhhhhccceEEEEcCC
Q 030987 98 ANVKENLQAVYFVHPG 113 (168)
Q Consensus 98 ~~ykKNLkalYIVHPt 113 (168)
-+.||+.+.|.||||-
T Consensus 88 GkLKKSVrGLVVVHPM 103 (123)
T 2lf0_A 88 GKLKKSVRGLVVVHPM 103 (123)
T ss_dssp HHHHHHTTSCEEECSS
T ss_pred HHHhhcccceeEecCc
Confidence 4579999999999994
No 10
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=52.03 E-value=48 Score=24.37 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=44.5
Q ss_pred EEEeccCCCCCeEEEEEeecCCC---CCCCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCc
Q 030987 21 FKIHGRDKQGRKILRIIGKFFPA---RLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGV 77 (168)
Q Consensus 21 ly~~G~D~~GrPVvV~~a~~lP~---~~~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~ 77 (168)
+-+.|+|+.|+-++..-.--+|- ...+-+.++.|+-. .++....++|-+|=|+..+
T Consensus 12 INvtGvd~~g~~~~~p~y~d~~l~~g~~~tK~elL~~Vq~-~idas~~~qf~vVdf~e~A 70 (121)
T 2sak_A 12 VNVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEW-ALDATAYKEFRVVELDPSA 70 (121)
T ss_dssp EEEEEECTTCCEEEEEEEEEEECCTTCEECHHHHHHHHHH-HHTTSTTTTCEEEEECTTC
T ss_pred EEEEeEeCCCCEEEeeeeEEEEcccCcEecHHHHHHHHHH-HhhhhhccceEEEecCccc
Confidence 45669999999999877754443 34688999999985 5888888899999888875
No 11
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=25.01 E-value=1.8e+02 Score=20.34 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHhhcCcCCCCCeEEEEEcCCcccccCcccHHHHHHHHHhcChhhhhccceEEEEcCChHHHHHHHHhch
Q 030987 46 LSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGR 125 (168)
Q Consensus 46 ~d~e~ll~Yvv~~~Ld~~~~~~yvlVy~htg~~~~~n~P~~~wL~~~y~~L~~~ykKNLkalYIVHPt~~~K~~l~~~~p 125 (168)
.|++++..-+. ..++.....+.-+.+..+....+ +++-+.+-.+ +..++.+..+++=||=-+-|.+.+..+++|
T Consensus 33 ~d~~~l~~~l~-~~l~~~~~~~i~ll~~~~~f~G~----~~~a~~~d~k-~~~~h~~~~~RiAvV~d~~W~~~~~~~~~~ 106 (126)
T 2q3l_A 33 EDYEQMTPLLE-SALAGIKTPEIVALIDITELDGL----SLHAAWDDLK-LGLKHGKEFKRVAIIGQGELQEWATRVANW 106 (126)
T ss_dssp HHHHHHHHHHH-HHTTTCCSSCEEEEEEEEEEEEE----CHHHHHHHHH-HHHHHGGGEEEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhCCCceEEEEEEecCCCCC----CHHHHHHHHH-hhhhHHhcCCEEEEEcChHHHHHHHHHHhh
Confidence 46777666665 33665555557777765554211 2333333332 456788999999999999999999999999
Q ss_pred hhcccc
Q 030987 126 LFFNGV 131 (168)
Q Consensus 126 Fissk~ 131 (168)
|+....
T Consensus 107 ~~~~ev 112 (126)
T 2q3l_A 107 FTPGEF 112 (126)
T ss_dssp HCSSEE
T ss_pred ccCCce
Confidence 976543
Done!