BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030988
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 189 bits (479), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 121/168 (72%), Gaps = 1/168 (0%)
Query: 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
ML+LLA LTC++ T +DG V R+YGLA+V +YL+ NEDGVS++ + L++Q+ V ++
Sbjct: 80 MLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMES 139
Query: 61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
WYHLKD +L+G +PF KA+ FEY R +FN+ M +H+ + MKKILE Y GF
Sbjct: 140 WYHLKDAVLDGGIPFNKAYGM-TAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGF 198
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
E + LVDV GG GA I+ +VSKYP I+GINFDLPHVI+DAPSY G+
Sbjct: 199 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVE 246
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Query: 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
+L+LLAS S +T L G V R+YGLA V ++L NEDGVSLAP LL+ + V ++P
Sbjct: 83 VLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEP 142
Query: 61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
W++LKD +LEG +PF KA+ N F+Y R +FN+ M +++ + MKKILE+Y GF
Sbjct: 143 WFYLKDAILEGGIPFNKAYGM-NIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGF 201
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
E + +VDV GG GA S++V+KYP I INFDLPHVI+DAP++ G+
Sbjct: 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVE 249
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Query: 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
+L+LLAS + +TC + KDG + R YG A V ++L PNEDGVS+A + L++Q+ V ++
Sbjct: 81 ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMES 140
Query: 61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
WY+LKD +L+G +PF KA+ + FEY R +FN+ M NH+ ++ KK+LE+Y GF
Sbjct: 141 WYYLKDAVLDGGIPFNKAYG-MSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGF 199
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGI 167
E + LVDV GG+GA ++ + + YP I+G+NFDLPHVI +AP + G+
Sbjct: 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGV 246
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 101/168 (60%)
Query: 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDP 60
ML+LLAS S LT T +DG RVYGL+ VG+YL+P+E LA +
Sbjct: 88 MLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQV 147
Query: 61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
W + K+ +++ + K + +E+ K + +FN+SM + A MK++LEIY GF
Sbjct: 148 WMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGF 207
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
E I+ LVDV GG G N+ L++SKYP I+GINFDLP VI++AP GI
Sbjct: 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIE 255
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 93/163 (57%)
Query: 6 ASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLK 65
AS S LT T +DG RVYGL+ VG+YL+P+E LA + W + K
Sbjct: 93 ASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFK 152
Query: 66 DCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQ 125
+ +++ + K + +E+ K + +FN+S + A K+ LEIY GFE I+
Sbjct: 153 EAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGIST 212
Query: 126 LVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQGIH 168
LVDV GG G N+ L++SKYP I+GINFDLP VI++AP GI
Sbjct: 213 LVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIE 255
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 56/130 (43%)
Query: 31 SVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMK 90
+V LL + LAP+ + ++ LK + E L +++ K
Sbjct: 97 TVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDK 156
Query: 91 AARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGI 150
FN +M + + L+ + + F+ + +VDV GG G ++ +P+++ I
Sbjct: 157 NPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCI 216
Query: 151 NFDLPHVIKD 160
FD P V+++
Sbjct: 217 VFDRPQVVEN 226
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 15 LVTNKD-GNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTL 73
++TN++ N Y L +V LL + LAP+ + +++LK + E L
Sbjct: 86 IITNQELENEEEAYAL-TVASELLVKGTELCLAPMVECVLDPTLSTSFHNLKKWVYEEDL 144
Query: 74 PFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALV---MKKILEIYKGFEEINQLVDVA 130
+ + +E+ K L+N ++ + + ++ MK +++G E I VDV
Sbjct: 145 TLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESI---VDVG 201
Query: 131 GGLGANISLLVSKYPQIRGINFDLPHVIKD 160
GG G ++ +P++ + FD P V+++
Sbjct: 202 GGNGTTGKIICETFPKLTCVVFDRPKVVEN 231
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 54/130 (41%)
Query: 31 SVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMK 90
+V LL + LAP + ++ LK + E L +++ K
Sbjct: 97 TVASELLVRGSDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDK 156
Query: 91 AARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGI 150
FN + + + L+ + + F+ + +VDV GG G ++ +P+++ I
Sbjct: 157 NPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCI 216
Query: 151 NFDLPHVIKD 160
FD P V+++
Sbjct: 217 VFDRPQVVEN 226
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 18 NKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLL-EGTLPFM 76
K+G+ FR L RYL + PI + + + D W L + L E L F
Sbjct: 87 TKEGDAFRNTALTE--RYLTTTSADY-IGPI--VEHQYLQWDNWPRLGEILRSEKPLAFQ 141
Query: 77 KAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGAN 136
+ ++ F + +A R+ FN + + + + E+ F ++D+AGG G
Sbjct: 142 Q----ESRFAHDTRA---RDAFNDAXVRLSQPXVDVVSELGV-FARARTVIDLAGGHGTY 193
Query: 137 ISLLVSKYPQIRGINFDLPHVIKDA 161
++ ++ ++PQ+ G +DLP +DA
Sbjct: 194 LAQVLRRHPQLTGQIWDLP-TTRDA 217
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 61 WYHLKDCLLEGTLPFMKAHN--AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYK 118
W HL D + EG +++ A+ F ++ R F Q++ ++ + +L +
Sbjct: 117 WGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD 176
Query: 119 GFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164
+ D+ GG GA +S YP + FD+P V+ A +
Sbjct: 177 -LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQH 221
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF 120
W L + G F A N + ++ + + R LFN++ + + ++ Y F
Sbjct: 143 WEQLTHSVRTGEASFDVA-NGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-F 200
Query: 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA 161
VD+ GG G+ + ++ +P +RG + P V ++A
Sbjct: 201 SGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEA 241
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 92 ARRRNLFNQSMH-NHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGI 150
R NL+ + +H ++A ++ +LE K + + +++DV GG+G + ++ +P++
Sbjct: 160 TREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDST 218
Query: 151 NFDLPHVI 158
+LP I
Sbjct: 219 ILNLPGAI 226
>pdb|3BBN|T Chain T, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 202
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 68 LLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEE 122
+ E P KA +A A K R ++N+S + A MKK+LE +G ++
Sbjct: 77 VCEAAAPTKKADSAAKRARQAEK----RRVYNKSKKSEARTRMKKVLEALEGLKK 127
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 75 FMKAHNAKNPFEYAMKAARRRNLFN-QSMHNHAALVMKKILEIYKGFEEINQLVDVAGGL 133
+ H +N EY + LF+ +S A M E K F + +VD+ GL
Sbjct: 117 YTDGHGTRN-IEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGL 175
Query: 134 GANISLLVSKYPQIRGINF 152
G L YPQ G +F
Sbjct: 176 GPAGELRYPSYPQSHGWSF 194
>pdb|2UWF|A Chain A, Crystal Structure Of Family 10 Xylanase From Bacillus
Halodurans
Length = 356
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 90 KAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRG 149
K + L + M NH V+++ + ++ +N+++D GGL S++ QI G
Sbjct: 114 KRKANKQLLLERMENHIKTVVERYKDDVTSWDVVNEVIDDDGGLRE------SEWYQITG 167
Query: 150 INF 152
++
Sbjct: 168 TDY 170
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 EDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN 80
E+G++ PIFLLS +NV + L D L+ LP K HN
Sbjct: 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLI-SDLPIYKRHN 258
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 EDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN 80
E+G++ PIFLLS +NV + L D L+ LP K HN
Sbjct: 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLI-SDLPIYKRHN 258
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 EDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN 80
E+G++ PIFLLS +NV + L D L+ LP K HN
Sbjct: 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLI-SDLPIYKRHN 258
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 40 EDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN 80
E+G++ PIFLLS +NV + L D L+ LP K HN
Sbjct: 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLI-SDLPIYKRHN 258
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 75 FMKAHNAKNPFEYAMKAARRRNLFN-QSMHNHAALVMKKILEIYKGFEEINQLVDVAGGL 133
+ H +N EY + LF+ +S A M E K F + +VD+ GL
Sbjct: 121 YTDGHGTRN-IEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGL 179
Query: 134 GANISLLVSKYPQIRGINF 152
G + YPQ G +F
Sbjct: 180 GPAGEMRYPSYPQSHGWSF 198
>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex
pdb|2VG1|B Chain B, Rv1086 E,E-Farnesyl Diphosphate Complex
Length = 228
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 39 NEDGVSLAPIFLLSQENVNVDP 60
+E G+ LA ++LLS EN+ DP
Sbjct: 45 HEAGIELATVYLLSTENLQRDP 66
>pdb|2VFW|A Chain A, Rv1086 Native
pdb|2VFW|B Chain B, Rv1086 Native
pdb|2VG0|A Chain A, Rv1086 Citronelly Pyrophosphate Complex
pdb|2VG0|B Chain B, Rv1086 Citronelly Pyrophosphate Complex
Length = 227
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 39 NEDGVSLAPIFLLSQENVNVDP 60
+E G+ LA ++LLS EN+ DP
Sbjct: 44 HEAGIELATVYLLSTENLQRDP 65
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 61 WYHLKDCLLEGTLPFMKAHNAKNPFEYAMKA--ARRRNLFNQSMHNHAALVMKKILEIYK 118
W + LL GT F A ++ + Y + A RR L N A + ++L+ ++
Sbjct: 110 WTPACEALLSGTPGFELAFG-EDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD-FR 167
Query: 119 GFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD 153
G VDV GG G ++ P RG+ D
Sbjct: 168 G----RSFVDVGGGSGELTKAILQAEPSARGVMLD 198
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 154 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 196
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGQLRYPSYPQSQGWEF 200
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEF 200
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINF 152
MK E F E ++D+ GLG L YPQ +G F
Sbjct: 158 MKSFRENMSDFLESGLIIDIYVGLGPAGELRYPSYPQSQGWEF 200
>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
Length = 626
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 16 VTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLL 69
V ++DGN+ + + +Y+L + V P+ L+ EN +V W L+ L+
Sbjct: 226 VLDQDGNIVNPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDV--WAELRQKLI 277
>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With Antidiabetic Drug St1326
pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
Length = 653
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 16 VTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLL 69
V ++DGN+ + + +Y+L + V P+ L+ EN +V W L+ L+
Sbjct: 251 VLDQDGNIVNPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDV--WAELRQKLI 302
>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2DEB|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2FYO|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group P43212
Length = 653
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 16 VTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLL 69
V ++DGN+ + + +Y+L + V P+ L+ EN +V W L+ L+
Sbjct: 251 VLDQDGNIVNPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDV--WAELRQKLI 302
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFL 50
+L + S ++L NL N D N + + LLPN G+SL P L
Sbjct: 271 ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 320
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFL 50
+L + S ++L NL N D N + + LLPN G+SL P L
Sbjct: 270 ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,837,383
Number of Sequences: 62578
Number of extensions: 186527
Number of successful extensions: 454
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 58
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)