Query 030988
Match_columns 168
No_of_seqs 122 out of 1054
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 6E-30 1.3E-34 195.3 10.9 138 24-163 3-141 (241)
2 KOG3178 Hydroxyindole-O-methyl 99.9 2.1E-23 4.5E-28 163.2 8.1 161 1-168 63-224 (342)
3 TIGR02716 C20_methyl_CrtF C-20 99.8 9.2E-20 2E-24 143.8 6.0 143 1-162 43-189 (306)
4 PRK06922 hypothetical protein; 98.4 7.2E-07 1.6E-11 76.3 7.8 80 82-162 377-459 (677)
5 PF12847 Methyltransf_18: Meth 98.2 1.6E-06 3.4E-11 58.0 3.3 39 124-162 3-42 (112)
6 PRK14103 trans-aconitate 2-met 98.1 1E-05 2.3E-10 62.2 7.2 52 111-163 19-71 (255)
7 PRK08287 cobalt-precorrin-6Y C 98.1 5.5E-06 1.2E-10 60.8 5.2 49 113-162 23-72 (187)
8 TIGR02469 CbiT precorrin-6Y C5 97.9 4.4E-05 9.6E-10 51.6 6.4 49 112-161 10-59 (124)
9 PRK01683 trans-aconitate 2-met 97.9 5.4E-05 1.2E-09 58.2 7.5 52 110-162 20-72 (258)
10 COG4106 Tam Trans-aconitate me 97.9 3E-05 6.5E-10 57.9 5.1 52 110-162 19-71 (257)
11 TIGR02021 BchM-ChlM magnesium 97.8 0.00012 2.6E-09 55.0 7.6 78 83-162 15-94 (219)
12 PRK15001 SAM-dependent 23S rib 97.8 4.5E-05 9.8E-10 62.0 5.1 49 113-162 220-269 (378)
13 PRK04457 spermidine synthase; 97.8 3E-05 6.6E-10 60.1 3.9 44 121-164 65-109 (262)
14 PRK07402 precorrin-6B methylas 97.7 7.3E-05 1.6E-09 55.3 5.4 49 113-162 32-81 (196)
15 PRK00107 gidB 16S rRNA methylt 97.7 0.00014 3.1E-09 53.6 6.7 41 122-162 45-86 (187)
16 TIGR03587 Pse_Me-ase pseudamin 97.7 9.6E-05 2.1E-09 55.2 5.7 43 121-163 42-85 (204)
17 PRK06202 hypothetical protein; 97.6 0.00043 9.4E-09 52.4 8.4 44 120-163 58-106 (232)
18 TIGR00091 tRNA (guanine-N(7)-) 97.6 0.00012 2.5E-09 54.2 4.8 40 122-161 16-56 (194)
19 PF05175 MTS: Methyltransferas 97.6 5E-05 1.1E-09 55.0 2.7 40 122-161 31-71 (170)
20 TIGR02752 MenG_heptapren 2-hep 97.6 0.00016 3.4E-09 54.6 5.6 50 112-162 36-87 (231)
21 TIGR00740 methyltransferase, p 97.6 8.4E-05 1.8E-09 56.6 4.1 42 121-162 52-96 (239)
22 PF08242 Methyltransf_12: Meth 97.6 1.8E-05 4E-10 51.8 0.2 37 127-163 1-38 (99)
23 COG2813 RsmC 16S RNA G1207 met 97.5 0.00015 3.3E-09 56.8 4.9 50 112-162 149-199 (300)
24 PRK15451 tRNA cmo(5)U34 methyl 97.5 0.00011 2.4E-09 56.3 4.2 42 121-162 55-99 (247)
25 PRK10258 biotin biosynthesis p 97.5 0.00067 1.5E-08 51.9 8.2 51 109-162 30-81 (251)
26 TIGR00138 gidB 16S rRNA methyl 97.5 0.00035 7.7E-09 51.2 6.0 37 123-159 43-80 (181)
27 PRK00121 trmB tRNA (guanine-N( 97.5 0.00022 4.9E-09 53.0 5.0 49 112-162 32-81 (202)
28 PRK11207 tellurite resistance 97.4 0.00026 5.7E-09 52.4 5.0 49 111-162 20-69 (197)
29 COG2242 CobL Precorrin-6B meth 97.4 0.0003 6.6E-09 51.5 5.2 46 114-160 27-73 (187)
30 PRK09489 rsmC 16S ribosomal RN 97.4 0.00024 5.2E-09 57.2 5.1 49 113-162 188-237 (342)
31 PRK11036 putative S-adenosyl-L 97.4 0.00041 8.9E-09 53.4 6.0 47 112-162 36-83 (255)
32 PRK14121 tRNA (guanine-N(7)-)- 97.4 0.00045 9.8E-09 56.3 5.8 47 113-160 114-161 (390)
33 COG2890 HemK Methylase of poly 97.3 0.0002 4.2E-09 56.1 3.4 38 125-162 113-151 (280)
34 PRK08317 hypothetical protein; 97.3 0.00054 1.2E-08 51.4 5.6 49 112-161 10-60 (241)
35 TIGR03704 PrmC_rel_meth putati 97.3 0.00064 1.4E-08 52.4 6.1 40 123-162 87-127 (251)
36 PRK00216 ubiE ubiquinone/menaq 97.3 0.0016 3.4E-08 49.1 8.1 50 112-162 42-93 (239)
37 PRK11805 N5-glutamine S-adenos 97.3 0.00025 5.4E-09 56.3 3.8 39 124-162 135-174 (307)
38 PF13649 Methyltransf_25: Meth 97.3 0.00024 5.3E-09 46.7 3.1 37 126-162 1-41 (101)
39 TIGR02072 BioC biotin biosynth 97.3 0.00074 1.6E-08 50.8 6.1 39 123-161 35-74 (240)
40 TIGR03533 L3_gln_methyl protei 97.3 0.00037 7.9E-09 54.7 4.3 41 122-162 121-162 (284)
41 PRK07580 Mg-protoporphyrin IX 97.2 0.00087 1.9E-08 50.4 6.1 41 120-162 61-102 (230)
42 PRK00274 ksgA 16S ribosomal RN 97.2 0.00067 1.5E-08 52.8 5.5 48 111-161 32-80 (272)
43 TIGR03534 RF_mod_PrmC protein- 97.2 0.00098 2.1E-08 50.7 5.8 41 122-162 87-128 (251)
44 PLN02233 ubiquinone biosynthes 97.2 0.0022 4.7E-08 49.7 7.8 43 120-162 71-115 (261)
45 TIGR00477 tehB tellurite resis 97.2 0.00078 1.7E-08 49.8 4.9 47 112-161 21-68 (195)
46 PF06325 PrmA: Ribosomal prote 97.2 0.00041 9E-09 54.6 3.5 62 97-162 139-201 (295)
47 PRK14966 unknown domain/N5-glu 97.2 0.00054 1.2E-08 56.3 4.3 40 123-162 252-292 (423)
48 TIGR01934 MenG_MenH_UbiE ubiqu 97.1 0.0014 3E-08 48.8 6.1 49 112-161 30-80 (223)
49 smart00650 rADc Ribosomal RNA 97.1 0.001 2.2E-08 48.0 5.2 47 111-160 3-50 (169)
50 PTZ00098 phosphoethanolamine N 97.1 0.001 2.2E-08 51.6 5.5 50 111-162 42-92 (263)
51 COG2226 UbiE Methylase involve 97.1 0.0013 2.7E-08 50.3 5.8 50 112-162 42-92 (238)
52 COG2230 Cfa Cyclopropane fatty 97.1 0.0017 3.7E-08 50.7 6.7 43 110-154 61-103 (283)
53 PLN02244 tocopherol O-methyltr 97.1 0.0013 2.9E-08 52.8 6.2 40 121-161 117-157 (340)
54 TIGR00536 hemK_fam HemK family 97.1 0.00056 1.2E-08 53.6 3.8 39 124-162 116-155 (284)
55 COG2264 PrmA Ribosomal protein 97.1 0.00051 1.1E-08 54.0 3.5 62 97-162 140-202 (300)
56 PRK01544 bifunctional N5-gluta 97.1 0.00061 1.3E-08 57.6 3.8 40 123-162 139-179 (506)
57 PLN02366 spermidine synthase 97.0 0.00074 1.6E-08 53.6 3.9 43 121-164 90-134 (308)
58 PRK11705 cyclopropane fatty ac 97.0 0.0023 5.1E-08 52.3 6.8 49 112-162 158-207 (383)
59 PRK09328 N5-glutamine S-adenos 97.0 0.0017 3.7E-08 50.2 5.8 43 120-162 106-149 (275)
60 PRK05785 hypothetical protein; 97.0 0.001 2.2E-08 50.5 4.4 39 123-162 52-91 (226)
61 PRK01581 speE spermidine synth 97.0 0.00088 1.9E-08 54.1 4.1 45 120-164 148-193 (374)
62 smart00138 MeTrc Methyltransfe 97.0 0.0031 6.8E-08 48.9 7.1 52 111-163 89-150 (264)
63 PRK00811 spermidine synthase; 97.0 0.00079 1.7E-08 52.8 3.4 43 121-163 75-118 (283)
64 TIGR00080 pimt protein-L-isoas 96.9 0.0029 6.3E-08 47.4 6.3 50 112-162 68-119 (215)
65 PRK11088 rrmA 23S rRNA methylt 96.9 0.0029 6.3E-08 49.2 6.4 41 122-162 85-129 (272)
66 PLN02490 MPBQ/MSBQ methyltrans 96.9 0.0024 5.2E-08 51.3 6.0 49 113-162 104-154 (340)
67 PRK00377 cbiT cobalt-precorrin 96.9 0.0021 4.5E-08 47.6 5.2 47 115-162 34-82 (198)
68 PF02390 Methyltransf_4: Putat 96.9 0.0018 3.9E-08 48.0 4.9 40 113-154 10-49 (195)
69 PF13659 Methyltransf_26: Meth 96.9 0.0013 2.8E-08 44.0 3.8 38 124-162 2-40 (117)
70 PRK11188 rrmJ 23S rRNA methylt 96.9 0.0048 1E-07 46.2 7.2 44 112-155 41-85 (209)
71 TIGR00406 prmA ribosomal prote 96.9 0.0013 2.8E-08 51.7 4.3 61 98-162 138-199 (288)
72 PLN02336 phosphoethanolamine N 96.8 0.0024 5.2E-08 53.5 5.5 49 111-161 256-305 (475)
73 TIGR00438 rrmJ cell division p 96.8 0.0043 9.4E-08 45.4 6.3 45 112-156 22-67 (188)
74 PRK04266 fibrillarin; Provisio 96.8 0.0049 1.1E-07 46.8 6.5 40 116-156 67-107 (226)
75 PRK13944 protein-L-isoaspartat 96.8 0.0052 1.1E-07 45.8 6.3 50 112-162 63-114 (205)
76 TIGR00537 hemK_rel_arch HemK-r 96.7 0.0021 4.5E-08 46.8 4.0 38 123-162 20-58 (179)
77 PF01209 Ubie_methyltran: ubiE 96.7 0.0018 4E-08 49.3 3.8 49 113-162 39-89 (233)
78 PRK14896 ksgA 16S ribosomal RN 96.7 0.0042 9E-08 48.0 5.8 48 110-160 18-66 (258)
79 PRK13942 protein-L-isoaspartat 96.7 0.0054 1.2E-07 46.0 6.3 50 112-162 67-118 (212)
80 PRK15068 tRNA mo(5)U34 methylt 96.7 0.005 1.1E-07 49.2 6.4 41 113-155 114-154 (322)
81 PF13489 Methyltransf_23: Meth 96.7 0.0057 1.2E-07 43.0 6.0 37 120-158 20-57 (161)
82 PRK12335 tellurite resistance 96.7 0.0028 6.2E-08 49.6 4.8 46 113-161 112-158 (287)
83 PRK00517 prmA ribosomal protei 96.7 0.0019 4.2E-08 49.6 3.7 41 121-162 118-159 (250)
84 PF02353 CMAS: Mycolic acid cy 96.7 0.0029 6.2E-08 49.4 4.5 43 110-154 51-93 (273)
85 COG4123 Predicted O-methyltran 96.7 0.0037 8E-08 48.0 4.9 44 113-156 35-78 (248)
86 PF08241 Methyltransf_11: Meth 96.6 0.0021 4.6E-08 40.9 3.1 35 127-162 1-36 (95)
87 PRK00050 16S rRNA m(4)C1402 me 96.6 0.0054 1.2E-07 48.4 5.7 51 111-162 9-61 (296)
88 PF07757 AdoMet_MTase: Predict 96.6 0.0041 8.8E-08 41.5 4.2 40 112-154 49-88 (112)
89 TIGR03438 probable methyltrans 96.6 0.0045 9.7E-08 48.9 5.3 48 111-161 55-104 (301)
90 PF13679 Methyltransf_32: Meth 96.6 0.0035 7.5E-08 43.9 4.2 41 120-160 23-68 (141)
91 TIGR00452 methyltransferase, p 96.6 0.0071 1.5E-07 48.2 6.2 40 113-154 113-152 (314)
92 KOG1540 Ubiquinone biosynthesi 96.6 0.0087 1.9E-07 46.1 6.3 65 97-162 75-147 (296)
93 PHA03411 putative methyltransf 96.5 0.0032 7E-08 49.1 4.0 40 123-162 65-105 (279)
94 PLN02396 hexaprenyldihydroxybe 96.5 0.0031 6.7E-08 50.4 3.9 38 123-162 132-170 (322)
95 TIGR00755 ksgA dimethyladenosi 96.5 0.008 1.7E-07 46.2 5.9 41 111-154 19-59 (253)
96 PRK14968 putative methyltransf 96.5 0.0047 1E-07 44.7 4.3 39 121-161 22-61 (188)
97 COG2227 UbiG 2-polyprenyl-3-me 96.4 0.0036 7.7E-08 47.7 3.4 37 124-162 61-98 (243)
98 PLN02672 methionine S-methyltr 96.3 0.0037 8E-08 57.0 3.7 38 124-161 120-158 (1082)
99 PLN03075 nicotianamine synthas 96.3 0.0085 1.8E-07 47.2 5.2 42 121-162 122-166 (296)
100 PLN02585 magnesium protoporphy 96.3 0.0048 1E-07 49.2 3.7 37 123-161 145-182 (315)
101 PRK03612 spermidine synthase; 96.2 0.0061 1.3E-07 51.8 4.3 42 121-163 296-339 (521)
102 PRK11727 23S rRNA mA1618 methy 96.2 0.006 1.3E-07 48.7 3.9 41 122-162 114-155 (321)
103 PLN02336 phosphoethanolamine N 96.2 0.01 2.2E-07 49.7 5.4 49 110-161 26-75 (475)
104 PRK00536 speE spermidine synth 96.2 0.0052 1.1E-07 47.7 3.4 42 120-163 70-112 (262)
105 COG0421 SpeE Spermidine syntha 96.2 0.0067 1.4E-07 47.6 3.9 46 120-165 74-120 (282)
106 PRK11873 arsM arsenite S-adeno 96.2 0.0095 2E-07 46.2 4.7 43 120-162 75-119 (272)
107 cd02440 AdoMet_MTases S-adenos 96.1 0.0084 1.8E-07 38.0 3.8 34 125-159 1-35 (107)
108 PRK14967 putative methyltransf 96.1 0.0098 2.1E-07 44.8 4.7 40 120-160 34-74 (223)
109 COG0220 Predicted S-adenosylme 96.1 0.014 3E-07 44.4 5.4 32 123-154 49-80 (227)
110 TIGR00417 speE spermidine synt 96.1 0.0074 1.6E-07 46.9 4.0 43 121-163 71-114 (270)
111 KOG2904 Predicted methyltransf 96.0 0.019 4.2E-07 44.7 5.7 35 122-156 148-182 (328)
112 KOG1270 Methyltransferases [Co 96.0 0.0048 1E-07 47.6 2.4 37 124-162 91-128 (282)
113 PHA03412 putative methyltransf 96.0 0.0075 1.6E-07 46.0 3.5 40 123-162 50-93 (241)
114 PRK13943 protein-L-isoaspartat 95.9 0.017 3.8E-07 46.1 5.4 50 112-162 71-122 (322)
115 PF03848 TehB: Tellurite resis 95.9 0.024 5.1E-07 42.0 5.6 41 112-155 21-61 (192)
116 PRK13168 rumA 23S rRNA m(5)U19 95.9 0.012 2.6E-07 49.0 4.5 48 112-162 288-336 (443)
117 TIGR02081 metW methionine bios 95.9 0.012 2.7E-07 43.2 4.0 38 122-160 13-51 (194)
118 PRK10901 16S rRNA methyltransf 95.9 0.011 2.5E-07 48.9 4.2 49 112-161 235-284 (427)
119 TIGR03840 TMPT_Se_Te thiopurin 95.8 0.021 4.6E-07 42.9 5.0 39 120-160 32-71 (213)
120 PLN02823 spermine synthase 95.7 0.012 2.6E-07 47.3 3.7 44 121-164 102-146 (336)
121 PF10294 Methyltransf_16: Puta 95.7 0.015 3.2E-07 42.2 3.9 41 121-161 44-84 (173)
122 PRK04148 hypothetical protein; 95.6 0.032 6.8E-07 38.9 5.1 48 112-162 7-56 (134)
123 TIGR00478 tly hemolysin TlyA f 95.6 0.046 9.9E-07 41.6 6.4 44 111-156 64-108 (228)
124 PRK14902 16S rRNA methyltransf 95.6 0.016 3.5E-07 48.3 4.1 49 112-161 241-291 (444)
125 PF07021 MetW: Methionine bios 95.6 0.02 4.4E-07 42.2 4.1 32 122-154 13-44 (193)
126 COG2263 Predicted RNA methylas 95.6 0.016 3.5E-07 42.6 3.5 41 120-162 44-85 (198)
127 PRK03522 rumB 23S rRNA methylu 95.5 0.039 8.4E-07 43.9 5.9 38 123-162 174-212 (315)
128 PRK05134 bifunctional 3-demeth 95.3 0.075 1.6E-06 40.0 6.6 38 122-161 48-86 (233)
129 COG4976 Predicted methyltransf 95.3 0.011 2.4E-07 44.9 1.8 41 112-155 116-156 (287)
130 PRK10909 rsmD 16S rRNA m(2)G96 95.2 0.041 9E-07 40.9 4.8 38 123-161 54-92 (199)
131 PTZ00338 dimethyladenosine tra 95.2 0.053 1.2E-06 42.8 5.7 41 111-154 26-66 (294)
132 KOG2899 Predicted methyltransf 95.2 0.033 7.1E-07 42.7 4.2 52 111-162 46-99 (288)
133 PF08003 Methyltransf_9: Prote 95.1 0.043 9.3E-07 43.4 4.8 39 113-153 107-145 (315)
134 PRK13255 thiopurine S-methyltr 95.0 0.055 1.2E-06 40.8 5.1 39 120-160 35-74 (218)
135 PF01728 FtsJ: FtsJ-like methy 95.0 0.033 7.2E-07 40.4 3.8 47 111-157 10-59 (181)
136 PRK00312 pcm protein-L-isoaspa 94.9 0.07 1.5E-06 39.7 5.5 47 112-161 69-116 (212)
137 TIGR01983 UbiG ubiquinone bios 94.8 0.033 7.1E-07 41.6 3.4 38 122-161 45-83 (224)
138 TIGR02085 meth_trns_rumB 23S r 94.8 0.044 9.6E-07 44.7 4.3 37 124-162 235-272 (374)
139 PF01564 Spermine_synth: Sperm 94.7 0.028 6E-07 43.2 2.9 44 121-164 75-119 (246)
140 TIGR00095 RNA methyltransferas 94.7 0.041 9E-07 40.5 3.7 36 124-160 51-87 (189)
141 PF06080 DUF938: Protein of un 94.7 0.042 9E-07 41.0 3.6 30 125-154 28-57 (204)
142 KOG1271 Methyltransferases [Ge 94.6 0.059 1.3E-06 39.6 4.2 39 122-161 67-107 (227)
143 TIGR00479 rumA 23S rRNA (uraci 94.6 0.065 1.4E-06 44.4 4.9 47 113-162 284-331 (431)
144 PLN02781 Probable caffeoyl-CoA 94.6 0.13 2.9E-06 39.1 6.2 43 120-162 66-110 (234)
145 PRK01544 bifunctional N5-gluta 94.6 0.043 9.4E-07 46.5 3.9 33 122-154 347-379 (506)
146 PTZ00146 fibrillarin; Provisio 94.5 0.075 1.6E-06 41.9 4.9 36 120-155 130-166 (293)
147 KOG3420 Predicted RNA methylas 94.5 0.065 1.4E-06 38.0 3.9 47 112-161 39-87 (185)
148 COG4262 Predicted spermidine s 94.3 0.083 1.8E-06 42.9 4.7 40 122-162 289-330 (508)
149 TIGR00563 rsmB ribosomal RNA s 94.3 0.057 1.2E-06 44.8 3.9 48 112-160 229-277 (426)
150 KOG1499 Protein arginine N-met 94.1 0.07 1.5E-06 42.8 3.9 40 122-162 60-99 (346)
151 PF01135 PCMT: Protein-L-isoas 94.1 0.1 2.2E-06 39.1 4.7 50 112-162 63-114 (209)
152 COG0357 GidB Predicted S-adeno 94.0 0.14 3E-06 38.6 5.0 32 123-154 68-99 (215)
153 PF02527 GidB: rRNA small subu 93.9 0.15 3.3E-06 37.4 5.1 30 125-154 51-80 (184)
154 KOG1541 Predicted protein carb 93.8 0.059 1.3E-06 40.8 2.9 47 113-162 40-89 (270)
155 TIGR01177 conserved hypothetic 93.8 0.15 3.3E-06 40.7 5.4 47 112-161 173-220 (329)
156 PF05148 Methyltransf_8: Hypot 93.7 0.44 9.6E-06 35.8 7.3 69 83-154 29-101 (219)
157 KOG3115 Methyltransferase-like 93.6 0.042 9.1E-07 41.0 1.7 32 123-154 61-92 (249)
158 PF00398 RrnaAD: Ribosomal RNA 93.5 0.17 3.7E-06 39.1 5.1 43 109-154 18-60 (262)
159 PF05185 PRMT5: PRMT5 arginine 93.5 0.16 3.5E-06 42.4 5.3 66 82-154 150-222 (448)
160 KOG2361 Predicted methyltransf 93.2 0.17 3.6E-06 38.8 4.4 39 124-162 73-114 (264)
161 KOG4589 Cell division protein 93.1 0.37 8.1E-06 35.7 5.9 47 112-158 59-106 (232)
162 TIGR02143 trmA_only tRNA (urac 93.1 0.18 4E-06 40.8 4.8 37 124-162 199-236 (353)
163 PF08123 DOT1: Histone methyla 92.4 0.31 6.8E-06 36.4 5.0 42 112-154 33-74 (205)
164 PRK14903 16S rRNA methyltransf 92.2 0.22 4.7E-06 41.5 4.3 47 113-160 229-277 (431)
165 PRK05031 tRNA (uracil-5-)-meth 91.8 0.3 6.4E-06 39.7 4.6 37 124-162 208-245 (362)
166 KOG3010 Methyltransferase [Gen 91.8 0.15 3.2E-06 39.1 2.6 42 122-165 33-75 (261)
167 PRK11760 putative 23S rRNA C24 91.7 0.27 5.8E-06 39.7 4.1 43 121-165 210-252 (357)
168 COG0030 KsgA Dimethyladenosine 91.7 0.59 1.3E-05 36.3 5.8 44 110-154 19-62 (259)
169 PF09243 Rsm22: Mitochondrial 91.4 0.51 1.1E-05 36.8 5.3 42 112-154 24-66 (274)
170 PF05401 NodS: Nodulation prot 91.2 0.22 4.7E-06 37.0 2.9 45 115-162 37-82 (201)
171 COG0293 FtsJ 23S rRNA methylas 90.7 1.3 2.8E-05 33.2 6.6 56 101-156 24-80 (205)
172 PRK14904 16S rRNA methyltransf 90.5 0.38 8.2E-06 40.2 4.1 42 120-161 248-291 (445)
173 COG2518 Pcm Protein-L-isoaspar 90.2 0.67 1.4E-05 34.8 4.7 48 112-162 63-111 (209)
174 PRK14901 16S rRNA methyltransf 89.9 0.5 1.1E-05 39.3 4.3 48 113-161 244-293 (434)
175 PF12147 Methyltransf_20: Puta 89.8 0.47 1E-05 37.4 3.8 40 121-160 134-176 (311)
176 PF04072 LCM: Leucine carboxyl 89.6 1.5 3.2E-05 32.0 6.1 64 97-160 53-116 (183)
177 PRK04338 N(2),N(2)-dimethylgua 89.5 0.5 1.1E-05 38.8 3.9 39 124-162 59-98 (382)
178 PF03141 Methyltransf_29: Puta 89.5 0.32 7E-06 41.0 2.8 26 121-148 116-141 (506)
179 TIGR00006 S-adenosyl-methyltra 89.5 1 2.2E-05 35.8 5.5 51 111-162 10-61 (305)
180 PF01596 Methyltransf_3: O-met 89.2 0.61 1.3E-05 34.9 3.9 43 120-162 43-87 (205)
181 PRK15128 23S rRNA m(5)C1962 me 88.9 0.51 1.1E-05 38.9 3.6 39 123-162 221-260 (396)
182 TIGR00446 nop2p NOL1/NOP2/sun 88.8 0.73 1.6E-05 35.7 4.3 40 120-159 69-110 (264)
183 KOG1500 Protein arginine N-met 88.7 1.4 3E-05 35.7 5.7 23 120-143 176-198 (517)
184 PLN02668 indole-3-acetate carb 88.2 1.9 4.2E-05 35.4 6.4 34 122-155 63-111 (386)
185 PF04672 Methyltransf_19: S-ad 88.1 2 4.4E-05 33.5 6.2 50 112-162 58-112 (267)
186 PF01795 Methyltransf_5: MraW 87.6 1.1 2.5E-05 35.6 4.6 51 111-162 10-61 (310)
187 PRK11783 rlmL 23S rRNA m(2)G24 87.5 0.68 1.5E-05 41.0 3.7 39 123-162 539-578 (702)
188 PF05206 TRM13: Methyltransfer 86.2 2.6 5.6E-05 32.7 5.9 36 120-155 16-56 (259)
189 PRK13256 thiopurine S-methyltr 86.1 1.6 3.5E-05 33.1 4.7 39 120-160 41-80 (226)
190 PLN02476 O-methyltransferase 86.1 1.3 2.8E-05 34.7 4.2 43 120-162 116-160 (278)
191 PF12692 Methyltransf_17: S-ad 86.1 7.6 0.00016 27.7 7.5 57 95-154 4-60 (160)
192 KOG2187 tRNA uracil-5-methyltr 85.9 1.2 2.6E-05 37.8 4.1 41 120-162 381-422 (534)
193 PF05724 TPMT: Thiopurine S-me 85.8 1.5 3.2E-05 33.1 4.3 40 120-161 35-75 (218)
194 KOG0820 Ribosomal RNA adenine 85.8 2.1 4.5E-05 33.7 5.0 42 110-154 47-88 (315)
195 PF03291 Pox_MCEL: mRNA cappin 85.5 1.6 3.4E-05 35.1 4.6 38 122-161 62-101 (331)
196 COG3963 Phospholipid N-methylt 84.6 5.4 0.00012 29.1 6.4 36 107-143 34-69 (194)
197 PF11312 DUF3115: Protein of u 83.7 6.7 0.00014 31.3 7.2 32 123-154 87-138 (315)
198 PF01170 UPF0020: Putative RNA 83.4 2.3 4.9E-05 31.0 4.2 49 112-161 19-77 (179)
199 TIGR02987 met_A_Alw26 type II 83.3 0.88 1.9E-05 38.8 2.4 38 122-159 31-77 (524)
200 PF05219 DREV: DREV methyltran 83.0 1.8 3.8E-05 33.7 3.7 34 122-155 94-127 (265)
201 PF02475 Met_10: Met-10+ like- 82.7 2.2 4.9E-05 31.8 4.0 39 121-159 100-139 (200)
202 PF03514 GRAS: GRAS domain fam 81.6 2.2 4.7E-05 34.9 3.9 45 111-156 100-151 (374)
203 COG5459 Predicted rRNA methyla 81.3 2.4 5.1E-05 34.6 3.9 41 113-154 105-146 (484)
204 KOG3045 Predicted RNA methylas 80.9 6.5 0.00014 30.8 6.0 56 83-138 137-196 (325)
205 cd00006 PTS_IIA_man PTS_IIA, P 80.2 4.7 0.0001 27.2 4.7 51 112-162 49-101 (122)
206 COG4122 Predicted O-methyltran 80.0 3.3 7.1E-05 31.4 4.1 43 120-162 57-101 (219)
207 PF02636 Methyltransf_28: Puta 79.6 4.2 9.2E-05 31.1 4.8 34 122-155 18-59 (252)
208 PF08704 GCD14: tRNA methyltra 78.1 6.7 0.00014 30.3 5.4 57 97-154 12-73 (247)
209 COG1352 CheR Methylase of chem 78.0 20 0.00043 28.0 8.0 41 122-162 96-146 (268)
210 COG2519 GCD14 tRNA(1-methylade 77.4 7.8 0.00017 30.0 5.5 53 101-154 70-127 (256)
211 KOG2940 Predicted methyltransf 76.7 11 0.00024 29.1 6.1 42 121-163 71-113 (325)
212 COG1565 Uncharacterized conser 76.0 13 0.00028 30.4 6.6 50 90-144 50-99 (370)
213 COG0275 Predicted S-adenosylme 75.7 8.5 0.00018 30.7 5.4 52 111-163 13-66 (314)
214 KOG1709 Guanidinoacetate methy 74.6 9.6 0.00021 29.1 5.2 51 112-164 93-143 (271)
215 TIGR00027 mthyl_TIGR00027 meth 74.2 14 0.00031 28.5 6.4 56 101-160 62-118 (260)
216 KOG2651 rRNA adenine N-6-methy 74.2 4.4 9.6E-05 33.4 3.6 45 112-157 143-187 (476)
217 TIGR00824 EIIA-man PTS system, 73.8 11 0.00024 25.3 5.0 50 113-162 51-102 (116)
218 KOG2918 Carboxymethyl transfer 73.4 13 0.00029 29.7 5.9 41 120-160 85-127 (335)
219 TIGR03329 Phn_aa_oxid putative 72.8 4.3 9.2E-05 33.9 3.4 34 124-157 25-60 (460)
220 PLN02589 caffeoyl-CoA O-methyl 71.7 6.5 0.00014 30.3 3.9 43 120-162 77-121 (247)
221 PF06406 StbA: StbA protein; 71.3 20 0.00043 28.5 6.8 61 98-158 248-310 (318)
222 PF07091 FmrO: Ribosomal RNA m 71.2 3.9 8.5E-05 31.6 2.6 34 122-155 105-138 (251)
223 PRK09273 hypothetical protein; 67.5 4.6 0.0001 30.3 2.2 41 125-165 65-105 (211)
224 PF02384 N6_Mtase: N-6 DNA Met 67.1 11 0.00024 29.5 4.5 39 120-158 44-90 (311)
225 KOG2793 Putative N2,N2-dimethy 66.9 8.7 0.00019 29.7 3.7 42 120-162 83-125 (248)
226 TIGR00308 TRM1 tRNA(guanine-26 66.5 7.3 0.00016 31.9 3.4 38 124-161 46-85 (374)
227 PF03610 EIIA-man: PTS system 63.4 7.9 0.00017 25.8 2.6 50 112-161 49-100 (116)
228 COG2384 Predicted SAM-dependen 62.7 9.2 0.0002 29.0 3.0 31 124-154 18-48 (226)
229 PRK13917 plasmid segregation p 62.0 44 0.00095 27.0 7.1 43 112-156 281-323 (344)
230 KOG3191 Predicted N6-DNA-methy 61.6 9.5 0.00021 28.3 2.9 38 123-160 44-83 (209)
231 PF01739 CheR: CheR methyltran 61.4 12 0.00026 27.8 3.4 51 111-162 21-81 (196)
232 PF02502 LacAB_rpiB: Ribose/Ga 61.1 5.1 0.00011 28.1 1.3 37 129-165 62-98 (140)
233 cd06059 Tubulin The tubulin su 61.1 20 0.00042 29.4 5.0 38 111-148 80-122 (382)
234 TIGR02364 dha_pts dihydroxyace 59.3 13 0.00028 25.5 3.1 39 121-160 60-101 (125)
235 KOG1661 Protein-L-isoaspartate 59.3 9.2 0.0002 29.0 2.5 43 120-162 80-125 (237)
236 cd02190 epsilon_tubulin The tu 59.2 20 0.00042 29.5 4.6 37 112-148 91-132 (379)
237 COG3315 O-Methyltransferase in 59.0 13 0.00028 29.5 3.5 56 101-160 73-129 (297)
238 PHA01634 hypothetical protein 58.5 13 0.00029 25.9 3.0 24 124-149 30-53 (156)
239 cd00286 Tubulin_FtsZ Tubulin/F 58.4 23 0.00049 28.3 4.8 37 111-147 80-121 (328)
240 COG0248 GppA Exopolyphosphatas 58.1 12 0.00025 32.0 3.2 28 109-137 117-144 (492)
241 TIGR00689 rpiB_lacA_lacB sugar 57.2 9 0.00019 27.0 2.1 37 129-165 61-97 (144)
242 PF03492 Methyltransf_7: SAM d 57.1 10 0.00023 30.5 2.7 37 120-156 14-66 (334)
243 PRK11783 rlmL 23S rRNA m(2)G24 57.0 18 0.00039 32.2 4.3 33 110-143 178-211 (702)
244 PF03602 Cons_hypoth95: Conser 56.2 14 0.0003 27.0 3.0 30 124-154 44-73 (183)
245 TIGR01120 rpiB ribose 5-phosph 55.9 9.9 0.00021 26.8 2.1 37 129-165 62-98 (143)
246 TIGR03739 PRTRC_D PRTRC system 55.8 75 0.0016 25.2 7.4 45 112-156 263-307 (320)
247 KOG2920 Predicted methyltransf 55.7 9.7 0.00021 29.9 2.2 32 123-155 117-148 (282)
248 PRK10742 putative methyltransf 55.3 37 0.00079 26.3 5.2 45 111-158 76-122 (250)
249 PRK05571 ribose-5-phosphate is 55.1 10 0.00023 26.9 2.1 37 129-165 64-100 (148)
250 COG0500 SmtA SAM-dependent met 54.8 21 0.00046 23.2 3.6 29 126-155 52-81 (257)
251 PRK04176 ribulose-1,5-biphosph 54.7 33 0.00073 26.4 5.1 31 125-155 27-57 (257)
252 COG5023 Tubulin [Cytoskeleton] 54.5 28 0.00061 28.7 4.6 47 111-157 121-175 (443)
253 KOG1975 mRNA cap methyltransfe 53.9 21 0.00046 28.9 3.8 42 112-157 109-151 (389)
254 cd06060 misato Human Misato sh 52.9 23 0.0005 30.2 4.2 38 111-148 142-183 (493)
255 PF13450 NAD_binding_8: NAD(P) 52.6 14 0.0003 22.2 2.1 26 129-155 2-28 (68)
256 COG1189 Predicted rRNA methyla 52.5 33 0.00071 26.4 4.5 31 112-143 69-100 (245)
257 PF14338 Mrr_N: Mrr N-terminal 52.4 3.9 8.3E-05 26.3 -0.4 30 3-40 62-91 (92)
258 PF05958 tRNA_U5-meth_tr: tRNA 52.3 20 0.00043 29.1 3.6 46 112-161 188-234 (352)
259 PTZ00383 malate:quinone oxidor 51.8 18 0.00039 30.9 3.4 33 124-156 46-80 (497)
260 cd02188 gamma_tubulin Gamma-tu 51.7 28 0.00061 29.1 4.5 36 112-147 122-162 (431)
261 TIGR03439 methyl_EasF probable 51.0 49 0.0011 26.6 5.6 43 110-155 67-113 (319)
262 PF00091 Tubulin: Tubulin/FtsZ 49.9 51 0.0011 24.5 5.3 45 112-156 116-166 (216)
263 PF09959 DUF2193: Uncharacteri 49.4 58 0.0013 27.1 5.7 84 57-140 67-154 (499)
264 KOG1098 Putative SAM-dependent 49.2 39 0.00085 29.9 4.9 53 104-156 26-79 (780)
265 KOG2782 Putative SAM dependent 48.3 21 0.00046 27.3 2.9 47 112-159 34-80 (303)
266 PLN00220 tubulin beta chain; P 47.0 38 0.00083 28.4 4.6 36 112-147 122-162 (447)
267 KOG3851 Sulfide:quinone oxidor 46.9 28 0.00062 28.3 3.6 32 122-153 38-71 (446)
268 PRK12615 galactose-6-phosphate 46.8 17 0.00037 26.4 2.2 37 129-165 63-99 (171)
269 KOG1501 Arginine N-methyltrans 46.7 16 0.00036 30.8 2.3 32 121-153 65-96 (636)
270 PF14947 HTH_45: Winged helix- 46.2 4 8.7E-05 25.3 -1.0 27 2-37 40-66 (77)
271 KOG0822 Protein kinase inhibit 46.1 56 0.0012 28.4 5.3 55 82-143 332-388 (649)
272 PTZ00387 epsilon tubulin; Prov 45.6 39 0.00085 28.6 4.4 37 111-147 122-163 (465)
273 PF00549 Ligase_CoA: CoA-ligas 44.8 29 0.00064 24.7 3.1 33 122-154 35-81 (153)
274 PF06792 UPF0261: Uncharacteri 44.7 76 0.0017 26.4 5.8 36 109-145 81-117 (403)
275 PF01638 HxlR: HxlR-like helix 44.6 7.2 0.00016 24.8 -0.0 34 2-37 40-73 (90)
276 PRK11031 guanosine pentaphosph 44.6 26 0.00056 29.9 3.3 23 113-136 124-146 (496)
277 TIGR01119 lacB galactose-6-pho 43.9 19 0.00041 26.2 2.0 37 129-165 63-99 (171)
278 cd02187 beta_tubulin The tubul 43.5 35 0.00077 28.4 3.9 37 112-148 121-162 (425)
279 COG0698 RpiB Ribose 5-phosphat 43.5 23 0.0005 25.2 2.3 37 129-165 64-100 (151)
280 cd02189 delta_tubulin The tubu 43.4 45 0.00098 28.0 4.5 37 112-148 118-159 (446)
281 COG3897 Predicted methyltransf 43.4 57 0.0012 24.5 4.5 24 120-143 77-100 (218)
282 PLN02927 antheraxanthin epoxid 42.8 32 0.00069 30.6 3.6 33 122-154 80-112 (668)
283 PTZ00215 ribose 5-phosphate is 42.8 21 0.00045 25.4 2.1 37 129-165 67-103 (151)
284 PRK08622 galactose-6-phosphate 42.7 20 0.00044 26.0 2.0 37 129-165 63-99 (171)
285 PF14314 Methyltrans_Mon: Viru 42.6 51 0.0011 29.3 4.8 44 109-154 311-357 (675)
286 PF02541 Ppx-GppA: Ppx/GppA ph 41.6 36 0.00078 26.4 3.5 13 121-133 111-123 (285)
287 COG4883 Uncharacterized protei 41.5 1.2E+02 0.0026 24.6 6.2 87 57-143 68-161 (500)
288 KOG1800 Ferredoxin/adrenodoxin 41.3 38 0.00082 28.2 3.5 41 114-154 11-53 (468)
289 cd02186 alpha_tubulin The tubu 41.3 45 0.00098 27.9 4.2 37 112-148 123-164 (434)
290 COG4820 EutJ Ethanolamine util 40.2 16 0.00034 27.7 1.1 11 124-134 142-152 (277)
291 PRK13610 photosystem II reacti 39.9 20 0.00044 24.0 1.5 21 88-108 89-109 (113)
292 COG1660 Predicted P-loop-conta 39.7 66 0.0014 25.3 4.5 52 79-135 202-254 (286)
293 PF02784 Orn_Arg_deC_N: Pyrido 39.6 70 0.0015 24.2 4.7 12 124-135 197-208 (251)
294 KOG4300 Predicted methyltransf 39.4 67 0.0014 24.5 4.3 33 122-155 76-108 (252)
295 PLN00222 tubulin gamma chain; 38.8 56 0.0012 27.6 4.3 37 112-148 124-165 (454)
296 PRK10854 exopolyphosphatase; P 38.8 31 0.00067 29.5 2.9 21 113-134 129-149 (513)
297 COG0031 CysK Cysteine synthase 38.7 1.3E+02 0.0027 24.1 6.1 43 110-155 159-205 (300)
298 PRK07535 methyltetrahydrofolat 38.0 53 0.0012 25.5 3.9 38 95-134 12-49 (261)
299 PLN00221 tubulin alpha chain; 37.7 55 0.0012 27.6 4.2 37 111-147 123-164 (450)
300 TIGR00292 thiazole biosynthesi 37.0 81 0.0018 24.2 4.7 32 125-156 23-54 (254)
301 PLN00039 photosystem II reacti 37.0 23 0.00051 23.7 1.5 21 88-108 83-103 (111)
302 TIGR03140 AhpF alkyl hydropero 36.9 37 0.00079 28.9 3.1 31 123-153 212-242 (515)
303 COG0045 SucC Succinyl-CoA synt 36.9 97 0.0021 25.6 5.2 40 112-153 273-316 (387)
304 PTZ00335 tubulin alpha chain; 36.9 58 0.0012 27.5 4.1 37 112-148 124-165 (448)
305 PRK07364 2-octaprenyl-6-methox 36.8 44 0.00096 27.1 3.5 32 124-155 19-50 (415)
306 KOG2352 Predicted spermine/spe 36.5 7.3 0.00016 32.9 -1.2 73 91-166 267-340 (482)
307 cd08283 FDH_like_1 Glutathione 36.5 73 0.0016 25.8 4.7 44 120-163 182-227 (386)
308 KOG4058 Uncharacterized conser 36.4 51 0.0011 23.7 3.2 41 112-154 63-103 (199)
309 TIGR03047 PS_II_psb28 photosys 36.2 25 0.00054 23.6 1.5 21 88-108 82-102 (109)
310 PF05891 Methyltransf_PK: AdoM 35.7 22 0.00047 27.0 1.3 40 122-162 55-95 (218)
311 COG4076 Predicted RNA methylas 35.4 1.6E+02 0.0034 22.2 5.7 36 124-161 34-70 (252)
312 KOG3987 Uncharacterized conser 35.3 21 0.00045 27.2 1.2 26 120-145 109-135 (288)
313 PF05577 Peptidase_S28: Serine 35.1 94 0.002 25.7 5.1 34 113-147 103-137 (434)
314 CHL00128 psbW photosystem II p 35.0 26 0.00057 23.6 1.5 21 88-108 85-105 (113)
315 PRK13612 photosystem II reacti 35.0 27 0.00058 23.6 1.5 21 88-108 85-105 (113)
316 PLN02546 glutathione reductase 34.7 45 0.00098 28.9 3.3 31 125-155 81-111 (558)
317 cd00740 MeTr MeTr subgroup of 34.6 60 0.0013 25.0 3.7 15 121-135 37-51 (252)
318 PF03912 Psb28: Psb28 protein; 34.2 22 0.00047 23.8 1.0 21 88-108 82-102 (108)
319 PRK10611 chemotaxis methyltran 33.7 52 0.0011 26.0 3.2 40 123-162 116-164 (287)
320 KOG1331 Predicted methyltransf 33.3 29 0.00062 27.5 1.7 31 122-156 45-75 (293)
321 KOG1335 Dihydrolipoamide dehyd 33.3 54 0.0012 27.4 3.3 31 124-154 40-70 (506)
322 PRK02399 hypothetical protein; 33.3 1.5E+02 0.0033 24.8 5.9 32 113-145 87-119 (406)
323 KOG2183 Prolylcarboxypeptidase 33.1 87 0.0019 26.4 4.4 28 121-148 164-192 (492)
324 PRK14484 phosphotransferase ma 33.0 1.5E+02 0.0032 20.3 5.0 44 112-157 50-94 (124)
325 COG1063 Tdh Threonine dehydrog 32.9 60 0.0013 26.1 3.6 39 125-163 171-211 (350)
326 TIGR01118 lacA galactose-6-pho 32.8 27 0.0006 24.5 1.4 36 130-165 62-97 (141)
327 PLN02661 Putative thiazole syn 32.8 73 0.0016 26.1 4.0 32 124-155 93-125 (357)
328 PLN02463 lycopene beta cyclase 32.6 52 0.0011 27.7 3.2 31 124-154 29-59 (447)
329 PF00175 NAD_binding_1: Oxidor 32.3 49 0.0011 21.1 2.5 6 129-134 2-7 (109)
330 KOG1447 GTP-specific succinyl- 31.8 50 0.0011 26.1 2.8 33 122-154 308-344 (412)
331 PF12242 Eno-Rase_NADH_b: NAD( 31.8 52 0.0011 20.7 2.3 37 120-156 36-76 (78)
332 TIGR03706 exo_poly_only exopol 31.5 64 0.0014 25.4 3.4 22 114-137 119-140 (300)
333 PRK13611 photosystem II reacti 31.3 34 0.00073 22.7 1.5 21 88-108 78-98 (104)
334 PLN00124 succinyl-CoA ligase [ 30.8 71 0.0015 26.8 3.7 32 122-153 317-352 (422)
335 COG1064 AdhP Zn-dependent alco 30.6 40 0.00086 27.4 2.1 39 124-164 170-209 (339)
336 PF11144 DUF2920: Protein of u 30.2 1.9E+02 0.0042 24.1 6.0 43 112-154 172-215 (403)
337 PTZ00153 lipoamide dehydrogena 30.0 58 0.0012 28.9 3.2 30 125-154 118-147 (659)
338 PF06969 HemN_C: HemN C-termin 29.7 21 0.00045 21.0 0.3 24 2-34 42-65 (66)
339 PF14881 Tubulin_3: Tubulin do 29.6 75 0.0016 23.2 3.3 39 111-149 65-107 (180)
340 PTZ00058 glutathione reductase 29.5 60 0.0013 28.2 3.2 30 125-154 50-79 (561)
341 PTZ00010 tubulin beta chain; P 29.4 68 0.0015 27.0 3.4 36 112-147 122-162 (445)
342 COG2265 TrmA SAM-dependent met 29.3 84 0.0018 26.4 3.9 37 113-150 285-321 (432)
343 PRK12613 galactose-6-phosphate 29.1 35 0.00076 24.0 1.4 35 131-165 62-96 (141)
344 COG2159 Predicted metal-depend 28.9 1.3E+02 0.0029 23.7 4.8 33 122-154 157-200 (293)
345 PF07381 DUF1495: Winged helix 28.9 22 0.00047 23.0 0.3 30 3-37 57-87 (90)
346 KOG1663 O-methyltransferase [S 28.7 1.1E+02 0.0024 23.5 4.1 36 120-155 71-107 (237)
347 PF13463 HTH_27: Winged helix 28.6 25 0.00054 20.5 0.5 30 2-33 39-68 (68)
348 KOG1276 Protoporphyrinogen oxi 28.6 83 0.0018 26.6 3.6 32 123-154 11-44 (491)
349 PLN02507 glutathione reductase 28.5 67 0.0015 27.3 3.3 29 126-154 28-56 (499)
350 PRK13748 putative mercuric red 28.2 68 0.0015 27.4 3.3 31 125-155 100-130 (561)
351 PRK08621 galactose-6-phosphate 27.4 35 0.00076 24.0 1.2 35 131-165 63-97 (142)
352 PRK08294 phenol 2-monooxygenas 27.0 71 0.0015 28.1 3.3 32 123-154 32-64 (634)
353 COG3016 PhuW Uncharacterized i 26.4 1.9E+02 0.0041 22.7 5.0 60 91-152 197-262 (295)
354 PLN00093 geranylgeranyl diphos 26.3 76 0.0016 26.6 3.2 32 124-155 40-71 (450)
355 PRK14727 putative mercuric red 26.2 79 0.0017 26.6 3.3 32 124-155 17-48 (479)
356 PF02608 Bmp: Basic membrane p 26.0 83 0.0018 24.7 3.2 34 121-154 60-93 (306)
357 PF07101 DUF1363: Protein of u 25.9 31 0.00066 22.6 0.6 29 126-154 6-39 (124)
358 PF05971 Methyltransf_10: Prot 25.7 49 0.0011 26.4 1.8 39 122-161 102-142 (299)
359 PLN02697 lycopene epsilon cycl 25.4 78 0.0017 27.3 3.1 31 124-154 109-139 (529)
360 cd06353 PBP1_BmpA_Med_like Per 25.2 1.4E+02 0.003 22.8 4.2 33 122-154 57-89 (258)
361 PRK08132 FAD-dependent oxidore 25.0 81 0.0018 27.0 3.2 32 124-155 24-55 (547)
362 PRK15317 alkyl hydroperoxide r 24.9 75 0.0016 27.0 3.0 30 124-153 212-241 (517)
363 KOG2915 tRNA(1-methyladenosine 24.8 1.2E+02 0.0026 24.1 3.7 57 97-154 77-138 (314)
364 COG1077 MreB Actin-like ATPase 24.5 45 0.00097 27.0 1.4 12 123-134 154-165 (342)
365 KOG0405 Pyridine nucleotide-di 24.5 94 0.002 25.8 3.2 30 126-155 23-52 (478)
366 PRK11475 DNA-binding transcrip 24.2 2.3E+02 0.0051 20.9 5.2 30 127-156 46-81 (207)
367 COG0116 Predicted N6-adenine-s 24.2 1.3E+02 0.0027 25.0 3.9 37 110-147 180-216 (381)
368 cd06843 PLPDE_III_PvsE_like Ty 23.9 1.6E+02 0.0034 23.9 4.6 13 123-135 204-216 (377)
369 PF15538 Toxin_61: Putative to 23.7 1.4E+02 0.003 21.4 3.6 45 88-134 21-65 (157)
370 PF02402 Lysis_col: Lysis prot 23.6 40 0.00086 18.7 0.7 11 123-133 21-31 (46)
371 KOG1374 Gamma tubulin [Cytoske 23.4 65 0.0014 26.7 2.2 33 114-146 126-163 (448)
372 PF08840 BAAT_C: BAAT / Acyl-C 23.4 1.7E+02 0.0036 21.7 4.3 44 112-156 11-55 (213)
373 PF12757 DUF3812: Protein of u 23.2 40 0.00087 23.1 0.8 13 121-133 55-67 (126)
374 PF01555 N6_N4_Mtase: DNA meth 23.2 2.4E+02 0.0052 20.3 5.1 46 112-161 183-229 (231)
375 TIGR03315 Se_ygfK putative sel 22.9 95 0.0021 29.2 3.3 31 124-154 538-568 (1012)
376 cd06831 PLPDE_III_ODC_like_AZI 22.8 1.7E+02 0.0037 24.1 4.5 11 124-134 204-214 (394)
377 PRK05354 arginine decarboxylas 22.2 1.3E+02 0.0028 26.7 3.9 12 124-135 284-295 (634)
378 cd06829 PLPDE_III_CANSDC Type 22.0 46 0.00099 26.7 1.1 12 124-135 189-200 (346)
379 KOG4716 Thioredoxin reductase 21.5 1.1E+02 0.0025 25.2 3.1 30 125-154 21-50 (503)
380 TIGR02133 RPI_actino ribose 5- 21.5 39 0.00085 23.9 0.5 37 129-165 64-100 (148)
381 PTZ00367 squalene epoxidase; P 21.3 1.1E+02 0.0024 26.6 3.3 31 124-154 34-64 (567)
382 COG3967 DltE Short-chain dehyd 21.3 2.1E+02 0.0045 21.9 4.3 29 123-151 53-83 (245)
383 TIGR01372 soxA sarcosine oxida 21.2 97 0.0021 28.9 3.1 31 124-154 164-194 (985)
384 PRK14045 1-aminocyclopropane-1 21.0 2.9E+02 0.0064 21.9 5.5 26 129-154 190-219 (329)
385 PRK06481 fumarate reductase fl 21.0 1E+02 0.0022 26.2 3.0 33 124-156 62-94 (506)
386 KOG2960 Protein involved in th 20.7 88 0.0019 24.0 2.2 29 125-153 78-108 (328)
387 TIGR03576 pyridox_MJ0158 pyrid 20.7 3.4E+02 0.0073 21.8 5.8 38 60-105 10-49 (346)
388 COG1179 Dinucleotide-utilizing 20.6 3.1E+02 0.0068 21.4 5.2 36 122-158 31-66 (263)
389 COG4567 Response regulator con 20.2 3.5E+02 0.0076 19.6 6.3 30 124-153 56-88 (182)
390 TIGR01273 speA arginine decarb 20.1 1.5E+02 0.0033 26.2 3.9 13 123-135 276-288 (624)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.96 E-value=6e-30 Score=195.35 Aligned_cols=138 Identities=29% Similarity=0.476 Sum_probs=121.7
Q ss_pred ccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcCCCchhHHhHhcHHHHHHHHHHHH
Q 030988 24 FRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAMKAARRRNLFNQSMH 103 (168)
Q Consensus 24 ~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g~~~~~e~~~~~p~~~~~f~~~m~ 103 (168)
+++|+||++|+.|+.+++..++..++.+...+..++.|.+|++++++|+++|+..+| .++|+++.++|+..+.|+++|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g-~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFG-TPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHS-S-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcC-CcHHHhhhhChHHHHHHHHHHH
Confidence 899999999999887765346888887755788899999999999999999999999 7899999999999999999999
Q ss_pred HhhHHHH-HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCC
Q 030988 104 NHAALVM-KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPS 163 (168)
Q Consensus 104 ~~~~~~~-~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~ 163 (168)
..+...+ +.+.+.++ |+..++|||||||+|.++++++++||++++++||+|+|++.++.
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~ 141 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE 141 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc
Confidence 9999887 78899999 99999999999999999999999999999999999999987653
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.89 E-value=2.1e-23 Score=163.15 Aligned_cols=161 Identities=45% Similarity=0.723 Sum_probs=144.6
Q ss_pred CccccccCCcccceeecCCCCccccceecchhccccCCCCCCCChHHHHHhhcCccccccCCcchHHHhcCCchhHhhcC
Q 030988 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGVSLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMKAHN 80 (168)
Q Consensus 1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~g 80 (168)
+||.|+++++++...+.. . .|++++.++.++.++...|+++++....++..++.|.++.++++.+..+|..++|
T Consensus 63 ~lr~L~s~~i~k~~~~~~-----~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G 136 (342)
T KOG3178|consen 63 ILRLLVSYSILKCRLVGG-----E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHG 136 (342)
T ss_pred HHHHHHHhhhceeeeecc-----e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccc
Confidence 589999999999974221 3 8999999999775544468999998877888999999999999999999999999
Q ss_pred CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988 81 AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD 160 (168)
Q Consensus 81 ~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~ 160 (168)
...|+|...+....+.|+++|...+....+.+.+.|.+|+....+||||||.|..+..++..||+++++.||+|.|++.
T Consensus 137 -~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~ 215 (342)
T KOG3178|consen 137 -MMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAA 215 (342)
T ss_pred -hhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhh
Confidence 8899999998888899999999999988888999998899999999999999999999999999999999999999999
Q ss_pred CCCC-CCCC
Q 030988 161 APSY-QGIH 168 (168)
Q Consensus 161 a~~~-~~~~ 168 (168)
++.+ |||+
T Consensus 216 a~~~~~gV~ 224 (342)
T KOG3178|consen 216 APYLAPGVE 224 (342)
T ss_pred hhhhcCCcc
Confidence 9988 7875
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.79 E-value=9.2e-20 Score=143.75 Aligned_cols=143 Identities=17% Similarity=0.344 Sum_probs=100.2
Q ss_pred CccccccCCcccceeecCCCCccccceecchhccccCCCCCCC---ChHHHHHhhcCccccccCCcchHHHhcCCchhHh
Q 030988 1 MLQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNEDGV---SLAPIFLLSQENVNVDPWYHLKDCLLEGTLPFMK 77 (168)
Q Consensus 1 lLr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~ 77 (168)
+||+|+++|+|++. +++|+||+.++.++.++++. ++.++..+. .......|.+|.+++| ++++|..
T Consensus 43 lL~~L~~lgll~~~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r-~~~~~~~ 111 (306)
T TIGR02716 43 LLETLRQMRVINLE---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVR-GQKNFKG 111 (306)
T ss_pred HHHHHHhCCCeEec---------CCcEecchhHHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhc-CCccccc
Confidence 58999999999984 78999999999877654421 112333322 1122357899999998 4444433
Q ss_pred hcCCCchhHHhHhcHHHHHHHHHHHH-HhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 78 AHNAKNPFEYAMKAARRRNLFNQSMH-NHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 78 ~~g~~~~~e~~~~~p~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
..+ +....++.. .|...|. .......+.+++.++ +++..+|||||||+|.+++.+++++|+++++++|+|+
T Consensus 112 ~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~ 183 (306)
T TIGR02716 112 QVP------YPPVTREDN-LYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPG 183 (306)
T ss_pred ccC------CCCCCHHHH-HhHHHHHHhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHH
Confidence 222 111223322 3444443 333445566888888 9888999999999999999999999999999999999
Q ss_pred HHhhCC
Q 030988 157 VIKDAP 162 (168)
Q Consensus 157 vi~~a~ 162 (168)
+++.++
T Consensus 184 ~~~~a~ 189 (306)
T TIGR02716 184 AIDLVN 189 (306)
T ss_pred HHHHHH
Confidence 998765
No 4
>PRK06922 hypothetical protein; Provisional
Probab=98.44 E-value=7.2e-07 Score=76.30 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=62.5
Q ss_pred CchhHHhHhcHHHHHHHHHHHHHhhHHH--HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH-HH
Q 030988 82 KNPFEYAMKAARRRNLFNQSMHNHAALV--MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH-VI 158 (168)
Q Consensus 82 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~-vi 158 (168)
..+|+++..+++..++|.+.|.....+. .......++ +....+|||||||+|.++..+++.+|+.+++.+|+.+ .+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 5789999999998999988876644331 122234556 6677899999999999999999999999999999965 46
Q ss_pred hhCC
Q 030988 159 KDAP 162 (168)
Q Consensus 159 ~~a~ 162 (168)
+.++
T Consensus 456 e~Ar 459 (677)
T PRK06922 456 DTLK 459 (677)
T ss_pred HHHH
Confidence 5544
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.18 E-value=1.6e-06 Score=57.98 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=35.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~ 42 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIAR 42 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999999999999998 77777654
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.12 E-value=1e-05 Score=62.22 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=44.6
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
..+++.++ .....+|||||||+|.++..+++++|+.+++.+|. |..++.++.
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence 46777777 66778999999999999999999999999999999 777776653
No 7
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.11 E-value=5.5e-06 Score=60.78 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=41.1
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
++..++ .....+|||||||+|.+++.+++++|+.+++.+|. |..++.++
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~ 72 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK 72 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 345555 66678999999999999999999999999999999 77666654
No 8
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.91 E-value=4.4e-05 Score=51.58 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=39.3
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.+++.+. .....+++|+|||+|.++..+++++|+.+++.+|. |..++.+
T Consensus 10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a 59 (124)
T TIGR02469 10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLI 59 (124)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHH
Confidence 3555565 55567999999999999999999999999999998 4555443
No 9
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.90 E-value=5.4e-05 Score=58.21 Aligned_cols=52 Identities=27% Similarity=0.466 Sum_probs=44.0
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+..+++.++ .....+|+|||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~ 72 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR 72 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 346777777 77778999999999999999999999999999998 66666554
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.85 E-value=3e-05 Score=57.95 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=45.5
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+-.++...+ ......|+|+|||+|....-++++||....+.+|- |..++.|+
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa 71 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAA 71 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHH
Confidence 346777788 88889999999999999999999999999999996 77777665
No 11
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.79 E-value=0.00012 Score=54.97 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=51.9
Q ss_pred chhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 83 NPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKG-FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 83 ~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
..|+....++.....+...|..........+++.... .....+++|||||+|.++..+++. +.+++.+|. |..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQM 92 (219)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence 4566666655556666666644333333445544431 334689999999999999999886 457889997 666665
Q ss_pred CC
Q 030988 161 AP 162 (168)
Q Consensus 161 a~ 162 (168)
++
T Consensus 93 a~ 94 (219)
T TIGR02021 93 AR 94 (219)
T ss_pred HH
Confidence 54
No 12
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.75 E-value=4.5e-05 Score=62.01 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhhCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~a~ 162 (168)
+++.++ .....+|||+|||+|.+++.+++++|+.+++.+|.. ..++.++
T Consensus 220 lL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 220 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred HHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 455555 333368999999999999999999999999999984 5565554
No 13
>PRK04457 spermidine synthase; Provisional
Probab=97.75 E-value=3e-05 Score=60.08 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY 164 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 164 (168)
+..++|+|||+|.|.++..+++.+|+.+++++|+ |+|++.++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~ 109 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNH 109 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH
Confidence 4557899999999999999999999999999999 9999988743
No 14
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.72 E-value=7.3e-05 Score=55.26 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=41.1
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+++.++ .....+|+|+|||+|.++..+++..|..+++.+|. |..++.++
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~ 81 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR 81 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 455566 66668999999999999999999999999999998 77776554
No 15
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.70 E-value=0.00014 Score=53.60 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=35.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
...+|+|||||+|..+..+++++|..+++.+|. |..++.++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~ 86 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR 86 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH
Confidence 357999999999999999999999999999998 55555443
No 16
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.69 E-value=9.6e-05 Score=55.21 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=37.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
....+|||||||+|.++..+++..|..+++.+|. |..++.|+.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~ 85 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKA 85 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHh
Confidence 4557899999999999999999989999999997 778887764
No 17
>PRK06202 hypothetical protein; Provisional
Probab=97.61 E-value=0.00043 Score=52.44 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=35.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHH----CCCCeEEEccc-hHHHhhCCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSK----YPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~----~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
..+..+|+|||||+|.++..+++. .|+.+++.+|+ |..++.++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~ 106 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARA 106 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHh
Confidence 345679999999999998888764 46789999998 777776653
No 18
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.59 E-value=0.00012 Score=54.21 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
....+||||||+|.++..+++++|+..++.+|. +..++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a 56 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAA 56 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHH
Confidence 457999999999999999999999999999998 6566554
No 19
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.58 E-value=5e-05 Score=55.01 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=34.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
...+++|+|||+|.+++.+++++|+.+++..|. |..++.+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a 71 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA 71 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 457899999999999999999999999999997 5565554
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.58 E-value=0.00016 Score=54.65 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 162 (168)
.++..++ .....+|||||||+|.++..+++.. |..+++.+|+ |..++.++
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 4556666 6666899999999999999999886 7789999998 66665443
No 21
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.58 E-value=8.4e-05 Score=56.59 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=36.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHH--CCCCeEEEccc-hHHHhhCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSK--YPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~--~P~l~~~v~Dl-P~vi~~a~ 162 (168)
....+|||||||+|.++..++++ +|+.+++.+|+ |..++.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~ 96 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR 96 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence 45568999999999999999997 48899999999 88887764
No 22
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.57 E-value=1.8e-05 Score=51.78 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=30.3
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 127 VDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 127 vDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
||||||+|.++..+++++|..+.+.+|. |..++.++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~ 38 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARE 38 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCC
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 7999999999999999999999999998 677766653
No 23
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00015 Score=56.77 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=40.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
-+++.++ .....+|+|+|||.|.+++.+++.+|+.+.+.+|. ...++.++
T Consensus 149 lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 149 LLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred HHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH
Confidence 4677777 44445999999999999999999999999999997 34555544
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.53 E-value=0.00011 Score=56.31 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=36.1
Q ss_pred CCCCeEEEecCCccHHHHHHHH--HCCCCeEEEccc-hHHHhhCC
Q 030988 121 EEINQLVDVAGGLGANISLLVS--KYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~--~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
....+|+|||||+|..+..+++ .+|+.+++.+|. |..++.++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~ 99 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR 99 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH
Confidence 3457999999999999999988 479999999998 88887764
No 25
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.51 E-value=0.00067 Score=51.94 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+..+++.++ .....+|||||||+|.++..+.+. ..+++.+|+ |..++.++
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~ 81 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQAR 81 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence 3445666666 455689999999999999888764 578899999 77776654
No 26
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.47 E-value=0.00035 Score=51.18 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHh
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIK 159 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~ 159 (168)
..+|+|||||+|.++..+++.+|+.+++.+|.- ..++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~ 80 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVA 80 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHH
Confidence 479999999999999999999999999999984 3443
No 27
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.46 E-value=0.00022 Score=53.05 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=39.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.|.+.+. - ...+|||||||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 32 ~~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~ 81 (202)
T PRK00121 32 DWAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL 81 (202)
T ss_pred CHHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHH
Confidence 3455555 2 457999999999999999999999999999998 65665543
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.44 E-value=0.00026 Score=52.44 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=38.3
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+.+++.++ .....+|||+|||+|..+..++++ ..+++.+|. |..++.++
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~ 69 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLE 69 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 45666666 555689999999999999999986 568999999 65665443
No 29
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.44 E-value=0.0003 Score=51.46 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred HHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 114 LEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 114 ~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
+..+. .....+++|||||+|.++++++...|..+++-+|. ++.++.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~ 73 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALEL 73 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHH
Confidence 44555 67778999999999999999999999999999997 444443
No 30
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.43 E-value=0.00024 Score=57.16 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=37.9
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+++.++ .....+|+|+|||+|.+++.+++++|+.+++.+|. +..++.++
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~ 237 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSR 237 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 344454 22335899999999999999999999999999998 45555443
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.41 E-value=0.00041 Score=53.37 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=36.5
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++.++ ....+|+|||||+|.++..+++. ..+++.+|. |..++.|+
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~ 83 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAK 83 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 3444444 34579999999999999999987 568899998 77777654
No 32
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.35 E-value=0.00045 Score=56.29 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=37.2
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
+++.+. -.....+||||||+|.++..+++++|+..++.+|. +..++.
T Consensus 114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ 161 (390)
T ss_pred HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 444454 33457999999999999999999999999999997 444443
No 33
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0002 Score=56.12 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=34.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+|+|||+|+|..+++++++.|+++++..|. |..++.|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~ 151 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR 151 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH
Confidence 899999999999999999999999999998 76666554
No 34
>PRK08317 hypothetical protein; Provisional
Probab=97.32 E-value=0.00054 Score=51.43 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=39.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a 161 (168)
.+.+.++ +....+|||+|||+|.++..+++.+ |..+++.+|. |..++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a 60 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA 60 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence 3455666 7777899999999999999999998 7889999998 4444443
No 35
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.32 E-value=0.00064 Score=52.39 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=35.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+++|+|||+|.++..+++..|..+++.+|. |..++.++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~ 127 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR 127 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 45899999999999999999999999999998 77777654
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.32 E-value=0.0016 Score=49.06 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=39.5
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
.++..+. .....+|+|||||+|.++..+++.+| +.+++.+|. |..++.++
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 93 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGR 93 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Confidence 4555555 55567999999999999999999998 789999998 55555443
No 37
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.31 E-value=0.00025 Score=56.25 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=35.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|+|+|||+|.+++.+++.+|+.+++.+|. |..++.|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~ 174 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE 174 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 6899999999999999999999999999999 77777654
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.30 E-value=0.00024 Score=46.66 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=28.1
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEccc-hHHHhhCC
Q 030988 126 LVDVAGGLGANISLLVSKY---PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 126 vvDvGGg~G~~~~~l~~~~---P~l~~~v~Dl-P~vi~~a~ 162 (168)
|||+|||+|.....+++.+ |..+.+.+|+ |+.++.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~ 41 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK 41 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH
Confidence 7999999999999999997 6789999997 55655543
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.29 E-value=0.00074 Score=50.75 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=33.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
..+|||||||+|.++..+++..|..+++..|. |..++.+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 74 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA 74 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH
Confidence 47899999999999999999999999999998 4444433
No 40
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.27 E-value=0.00037 Score=54.68 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=36.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
...+|+|+|||+|.+++.+++++|+.+++.+|. |..++.|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~ 162 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE 162 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 346899999999999999999999999999998 66776654
No 41
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.25 E-value=0.00087 Score=50.40 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=32.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.....+|||||||+|.++..+++..+ +++.+|. |..++.++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~ 102 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEAR 102 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHH
Confidence 44557999999999999999998754 5889998 55665554
No 42
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.24 E-value=0.00067 Score=52.83 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
..+++.++ .....+|+|||||+|.++..++++.+ +++.+|. |..++.+
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~ 80 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPIL 80 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHH
Confidence 35666666 66668999999999999999999987 6677776 5555544
No 43
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.19 E-value=0.00098 Score=50.75 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=35.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
...+|+|+|||+|.++..+++.+|+.+++.+|. |..++.++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~ 128 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR 128 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 346899999999999999999999999999997 66666554
No 44
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.19 E-value=0.0022 Score=49.67 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 162 (168)
.....+|+|||||+|.++..+++.+ |+.+++.+|. |..++.|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~ 115 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA 115 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 5566799999999999999998875 6789999998 56666553
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.16 E-value=0.00078 Score=49.83 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.+.+.++ .....+|+|||||+|.++..++++ ..+++.+|. |..++.+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a 68 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASV 68 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHH
Confidence 4555565 444579999999999999999986 578999998 5556543
No 46
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.16 E-value=0.00041 Score=54.65 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=43.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.|-.+-+..++++. .+++.+. .++ .+|+|||||+|.++++.++.-.. +++.+|. |..++.|+
T Consensus 139 AFGTG~H~TT~lcl-~~l~~~~-~~g-~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 139 AFGTGHHPTTRLCL-ELLEKYV-KPG-KRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAAR 201 (295)
T ss_dssp SS-SSHCHHHHHHH-HHHHHHS-STT-SEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHH
T ss_pred cccCCCCHHHHHHH-HHHHHhc-cCC-CEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHH
Confidence 46666666777766 5566665 444 69999999999999999997443 6889997 65666554
No 47
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.15 E-value=0.00054 Score=56.34 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+++|||||+|.+++.+++++|+.+++.+|. |..++.++
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar 292 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR 292 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 35899999999999999999999999999999 77777664
No 48
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.14 E-value=0.0014 Score=48.82 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=39.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a 161 (168)
.+++... .....+|+|+|||+|.++..+++.+|. .+++.+|. |..++.+
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~ 80 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVA 80 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 4455555 456689999999999999999999998 78999998 5565544
No 49
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.13 E-value=0.001 Score=47.96 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhh
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKD 160 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~ 160 (168)
..+++.++ +....+++|||||+|.++..++++ ..+++.+|.- ..++.
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~ 50 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPR 50 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHH
Confidence 35667777 777789999999999999999998 5678888873 34443
No 50
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.13 E-value=0.001 Score=51.55 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=39.9
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+++.+. .....+|||||||+|..+..+++.+ ..+++.+|+ |..++.++
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~ 92 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAK 92 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHH
Confidence 45777777 7788899999999999999998865 678999998 55555444
No 51
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.13 E-value=0.0013 Score=50.32 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=39.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.++.... .....+|||||||+|-++..+++..+..+++..|. +.-++.++
T Consensus 42 ~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 42 ALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred HHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 3444443 33568999999999999999999999999999997 55666554
No 52
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.0017 Score=50.69 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
...+.+.+. ++.-.+|||||||-|.+++-.+++| +.+++.+++
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTl 103 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTL 103 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeC
Confidence 456888888 9999999999999999999999999 999988887
No 53
>PLN02244 tocopherol O-methyltransferase
Probab=97.12 E-value=0.0013 Score=52.82 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=32.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
....+|||||||+|.++..+++++ +.+++.+|+ |..++.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a 157 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARA 157 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHH
Confidence 456799999999999999999988 778999998 4445443
No 54
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.10 E-value=0.00056 Score=53.59 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=34.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|+|+|||+|.+++.+++.+|+.+++.+|. |..++.++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~ 155 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE 155 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 6899999999999999999999999999998 66766554
No 55
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.00051 Score=54.04 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=45.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.|-.+-+..++++. .+++.+. ....+++|||||+|.++++.++--. -+++.+|. |..++.++
T Consensus 140 AFGTG~HpTT~lcL-~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~ 202 (300)
T COG2264 140 AFGTGTHPTTSLCL-EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAAR 202 (300)
T ss_pred ccCCCCChhHHHHH-HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHH
Confidence 46666666666665 6777776 4668999999999999999998632 35888898 55555554
No 56
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.06 E-value=0.00061 Score=57.63 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=35.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|||||||+|.+++.+++++|+.+++.+|. |..++.|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~ 179 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK 179 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 36899999999999999999999999999998 66777655
No 57
>PLN02366 spermidine synthase
Probab=97.03 E-value=0.00074 Score=53.58 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAPSY 164 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~~~ 164 (168)
...++||+||||.|..+.++++. |. .+++++|+ |.|++.++.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~ 134 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKF 134 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHh
Confidence 45789999999999999999875 65 57899998 5588887753
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.02 E-value=0.0023 Score=52.27 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++.++ .....+|||||||+|.++..+++.+ +.+++.+|+ |+.++.++
T Consensus 158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~ 207 (383)
T PRK11705 158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQ 207 (383)
T ss_pred HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 4566666 6777899999999999999998876 678999998 66666544
No 59
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.02 E-value=0.0017 Score=50.24 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=35.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.....+|+|+|||+|.++..+++..|..+++..|. |..++.++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~ 149 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVAR 149 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 34557899999999999999999999999999997 55555443
No 60
>PRK05785 hypothetical protein; Provisional
Probab=97.02 E-value=0.001 Score=50.47 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=33.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|||||||+|.++..+++.+ +.+++.+|. |+.++.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNL 91 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHH
Confidence 5799999999999999999987 678999998 66666654
No 61
>PRK01581 speE spermidine synthase; Validated
Probab=97.01 E-value=0.00088 Score=54.15 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY 164 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 164 (168)
.....+||+||||.|..+.++++..|..+++++|+ |.|++.|+.+
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~ 193 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNV 193 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhc
Confidence 34567999999999999999998555578999998 7899988853
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.00 E-value=0.0031 Score=48.92 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEccc-hHHHhhCCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGA----NISLLVSKYP-----QIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~----~~~~l~~~~P-----~l~~~v~Dl-P~vi~~a~~ 163 (168)
+.+++.-. .....+|+|+|||+|. +++.+++..| +.+++..|. |..++.|+.
T Consensus 89 p~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 89 PLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred HHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 34444333 3445799999999996 5666777665 578899998 778887763
No 63
>PRK00811 spermidine synthase; Provisional
Probab=96.95 E-value=0.00079 Score=52.79 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=36.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
++.++|+|||||.|..+..+++..+..+++++|+ |.|++.++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~ 118 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRK 118 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHH
Confidence 4567999999999999999998545568999998 788888774
No 64
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.94 E-value=0.0029 Score=47.44 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=38.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++.++ .....+|+|||||+|.++..+++..+ +.+++.+|. |..++.|+
T Consensus 68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~ 119 (215)
T TIGR00080 68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119 (215)
T ss_pred HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 4555666 66778999999999999999999865 467888886 66666554
No 65
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.93 E-value=0.0029 Score=49.19 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=33.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC---eEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQI---RGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l---~~~v~Dl-P~vi~~a~ 162 (168)
...+|||||||+|.++..+++..|.. +++.+|. |..++.|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~ 129 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA 129 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH
Confidence 44689999999999999999998864 5799998 56666554
No 66
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.92 E-value=0.0024 Score=51.34 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=38.6
Q ss_pred HHHHcCCCC-CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 113 ILEIYKGFE-EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~-~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+++... +. ...+|||||||+|.++..+++.+|..+++.+|. |..++.++
T Consensus 104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~ 154 (340)
T PLN02490 104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154 (340)
T ss_pred HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 344444 43 346999999999999999999999899999998 66666554
No 67
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.92 E-value=0.0021 Score=47.62 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=37.8
Q ss_pred HHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988 115 EIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 115 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 162 (168)
...+ .....+++|+|||+|.+++.+++.. |..+++.+|. |..++.++
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 3455 6667899999999999999998864 6789999998 77766543
No 68
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.92 E-value=0.0018 Score=48.02 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=32.3
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
|-+.|+ - ....+||||||.|.+++++++.+|+...+.+|.
T Consensus 10 ~~~~f~-~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~ 49 (195)
T PF02390_consen 10 WQEIFG-N-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEI 49 (195)
T ss_dssp HHHHHT-S-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES
T ss_pred HHHHcC-C-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEec
Confidence 444454 2 234999999999999999999999999999996
No 69
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.91 E-value=0.0013 Score=44.03 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=32.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|+|+|||+|.+++.+++.. ..+++.+|+ |..++.++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~ 40 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELAR 40 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHH
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHH
Confidence 379999999999999999998 889999998 66666544
No 70
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.90 E-value=0.0048 Score=46.20 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccch
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLP 155 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP 155 (168)
.+.+.|..+....+|||||||+|.++..++++. |.-+++.+|+-
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~ 85 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDIL 85 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecc
Confidence 445555524556799999999999999999986 44678888864
No 71
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.90 E-value=0.0013 Score=51.65 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=40.9
Q ss_pred HHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 98 FNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 98 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
|..+.+..+++.. .+++.+. . ...+|+|||||+|.+++.+++. +.-+++.+|. |..++.++
T Consensus 138 FgtG~h~tt~l~l-~~l~~~~-~-~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~ 199 (288)
T TIGR00406 138 FGTGTHPTTSLCL-EWLEDLD-L-KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESAR 199 (288)
T ss_pred ccCCCCHHHHHHH-HHHHhhc-C-CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHH
Confidence 5555554545443 3455555 3 3479999999999999988874 4458899998 45555443
No 72
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.83 E-value=0.0024 Score=53.46 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=38.9
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
..+++.+. ++...+|||||||+|..++.+++.+ +.+++.+|+ |..++.|
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A 305 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFA 305 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHH
Confidence 34666666 6667899999999999999998876 779999998 5565554
No 73
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.83 E-value=0.0043 Score=45.45 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPH 156 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~ 156 (168)
.+.+.+.......+|+|+|||+|.++..+++++ +..+++.+|+-+
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~ 67 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence 455556545667899999999999999999887 556778777743
No 74
>PRK04266 fibrillarin; Provisional
Probab=96.80 E-value=0.0049 Score=46.77 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=34.2
Q ss_pred HcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hH
Q 030988 116 IYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PH 156 (168)
Q Consensus 116 ~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~ 156 (168)
.++ .....+|+|+|||+|.++..+++..+.-+++.+|. |.
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ 107 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPR 107 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHH
Confidence 456 67778999999999999999999998667899998 53
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.76 E-value=0.0052 Score=45.78 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++.++ .....+|+|||||+|.++..+++..+ .-+++.+|. |..++.++
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~ 114 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA 114 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 3455555 55567999999999999999988765 557888887 55555443
No 76
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.75 E-value=0.0021 Score=46.76 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|+|+|||+|.++..+.+..+ +++.+|+ |..++.++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~ 58 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELR 58 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHH
Confidence 36899999999999999999887 8888997 66666544
No 77
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.73 E-value=0.0018 Score=49.33 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=32.2
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 162 (168)
+++... .....+|||||||+|.++..++++. |+.+++..|. |..++.++
T Consensus 39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~ 89 (233)
T PF01209_consen 39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVAR 89 (233)
T ss_dssp HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHH
T ss_pred HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHH
Confidence 444444 4556799999999999999999875 6789999998 55666554
No 78
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.73 E-value=0.0042 Score=48.01 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhh
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKD 160 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~ 160 (168)
...+++..+ .....+|+|||||+|.++..++++. .+++.+|.- ..++.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~ 66 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEF 66 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHH
Confidence 345666666 6666899999999999999999984 477888873 34443
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.73 E-value=0.0054 Score=45.99 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++.++ .....+|+|||||+|.++..+++.. ++.+++.+|. |..++.++
T Consensus 67 ~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~ 118 (212)
T PRK13942 67 IMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK 118 (212)
T ss_pred HHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 4566666 7777899999999999998888875 4568888887 66666554
No 80
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.72 E-value=0.005 Score=49.19 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=32.0
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
+...++.++ ..+|+|||||+|.++..+++..|. +++.+|.-
T Consensus 114 l~~~l~~l~-g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S 154 (322)
T PRK15068 114 VLPHLSPLK-GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPS 154 (322)
T ss_pred HHHhhCCCC-CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCC
Confidence 344554233 479999999999999999999876 58999963
No 81
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.72 E-value=0.0057 Score=42.97 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=29.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHH
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVI 158 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi 158 (168)
.....+|||||||.|.++..+.+..+ +++.+|. |..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~ 57 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMI 57 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHH
Confidence 35668999999999999999977644 8899997 4444
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.71 E-value=0.0028 Score=49.65 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
++..++ .....+|||||||+|..+..+++. ..+++.+|. |..++.+
T Consensus 112 ~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~ 158 (287)
T PRK12335 112 VLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENL 158 (287)
T ss_pred HHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 444444 334469999999999999999885 678999998 5555543
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.69 E-value=0.0019 Score=49.59 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
....+|+|||||+|.+++.+++..+. +++.+|. |..++.++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~ 159 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAAR 159 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHH
Confidence 34579999999999999988776554 6889998 66666554
No 84
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.66 E-value=0.0029 Score=49.41 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
...+++..+ .+.-.+|||||||-|.+++.++++| +++++.+.+
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitl 93 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITL 93 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEEC
Confidence 346777777 8888999999999999999999999 889888877
No 85
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.65 E-value=0.0037 Score=47.97 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
++..+.......+|+|+|+|+|..++.++++.++++.+.+++-+
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~ 78 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE 78 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH
Confidence 34444324557899999999999999999999999999999844
No 86
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.64 E-value=0.0021 Score=40.88 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=28.3
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 127 VDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 127 vDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
||||||+|..+..++++ |..+++.+|. +..++.++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~ 36 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQAR 36 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH
Confidence 79999999999999998 9999999998 44455443
No 87
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.60 E-value=0.0054 Score=48.40 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=42.3
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
..+++.+. ......+||.++|.|.++..+++..| +.+++.+|. |+.++.++
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 45677776 55557999999999999999999996 789999998 77777665
No 88
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.60 E-value=0.0041 Score=41.51 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=29.5
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
-|-..|. -.....+||||||+|.+.--|.+. ..++..+|.
T Consensus 49 LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 49 LWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4455554 346789999999999988777665 677777774
No 89
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.60 E-value=0.0045 Score=48.93 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccchH-HHhhC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDLPH-VIKDA 161 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~DlP~-vi~~a 161 (168)
..+++.++ ...+|||+|||+|..+..++++.+ ..+++.+|+.+ .++.+
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a 104 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKES 104 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHH
Confidence 34554443 336899999999999999999988 68899999853 44433
No 90
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.60 E-value=0.0035 Score=43.94 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHH----CCCCeEEEccc-hHHHhh
Q 030988 120 FEEINQLVDVAGGLGANISLLVSK----YPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~----~P~l~~~v~Dl-P~vi~~ 160 (168)
-.+..+|||+|+|.|.++..++.. .|+++++.+|. |+.++.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 466789999999999999999882 38899999996 444443
No 91
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.56 E-value=0.0071 Score=48.18 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
++..++ .....+|+|||||+|.++..+++..+. +++.+|.
T Consensus 113 ~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDp 152 (314)
T TIGR00452 113 VLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDP 152 (314)
T ss_pred HHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcC
Confidence 444444 333479999999999999999988775 6888896
No 92
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.56 E-value=0.0087 Score=46.07 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=44.0
Q ss_pred HHHHHHHHhhH-HHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC------CeEEEccc-hHHHhhCC
Q 030988 97 LFNQSMHNHAA-LVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ------IRGINFDL-PHVIKDAP 162 (168)
Q Consensus 97 ~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~------l~~~v~Dl-P~vi~~a~ 162 (168)
..+.+|+.--. .+-+..+.... -.....+|||+||+|-++-.+++.-+. -+++|.|. |+.+..++
T Consensus 75 ~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk 147 (296)
T KOG1540|consen 75 IMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK 147 (296)
T ss_pred HHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH
Confidence 45566654322 22222333333 223489999999999999999999998 68999998 66665543
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=96.54 E-value=0.0032 Score=49.07 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|+|+|||+|.+++.++++.+..+++.+|. |..++.++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar 105 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK 105 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 46899999999999999999988889999998 66666554
No 94
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=96.51 E-value=0.0031 Score=50.40 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=30.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|||||||+|.++..+++ ++.+++.+|. |..++.++
T Consensus 132 g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar 170 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIAR 170 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHH
Confidence 35899999999999998876 4788999997 56666554
No 95
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.48 E-value=0.008 Score=46.22 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=33.6
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
..+++..+ .....+|+|||||+|.++..++++.+. ++.+|.
T Consensus 19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~ 59 (253)
T TIGR00755 19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEI 59 (253)
T ss_pred HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEEC
Confidence 45666677 777789999999999999999999875 666665
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=96.46 E-value=0.0047 Score=44.74 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
....+++|+|||+|.++..++++ ..+++.+|. |.+++.+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a 61 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECA 61 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHH
Confidence 44568999999999999999998 678899998 6676655
No 97
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.40 E-value=0.0036 Score=47.65 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=32.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|||||||-|.++..+++.- .+++..|+ ++-|+.|+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak 98 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAK 98 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHH
Confidence 699999999999999999994 88999997 56777776
No 98
>PLN02672 methionine S-methyltransferase
Probab=96.33 E-value=0.0037 Score=57.04 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=34.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.+|+|||||+|.+++.+++++|..+++..|. |..++.|
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A 158 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVA 158 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 5899999999999999999999999999998 6666655
No 99
>PLN03075 nicotianamine synthase; Provisional
Probab=96.31 E-value=0.0085 Score=47.24 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=32.3
Q ss_pred CCCCeEEEecCCccHHH--HHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 121 EEINQLVDVAGGLGANI--SLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~--~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
...++|+|||||+|-++ ...++.+|+.+++.+|. |+.++.|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar 166 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVAR 166 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 36789999999988443 33445789999999998 66776665
No 100
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.27 E-value=0.0048 Score=49.16 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=30.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
..+|||||||+|.+++.+++. +.+++.+|. |..++.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A 182 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEA 182 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 469999999999999999986 678999998 4455444
No 101
>PRK03612 spermidine synthase; Provisional
Probab=96.23 E-value=0.0061 Score=51.83 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~~ 163 (168)
++.++|+|||||.|..+.++++ +|. -+++++|. |++++.++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELART 339 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHh
Confidence 4568999999999999999997 676 68999998 899998876
No 102
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.22 E-value=0.006 Score=48.71 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
...++||||+|+|.+...++.+.|+.+++..|. |..++.|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~ 155 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQ 155 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Confidence 457999999999998888888999999999997 66666554
No 103
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.19 E-value=0.01 Score=49.73 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.+.+++.++ .....++||||||+|.++..+++... +++.+|. |..++.+
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a 75 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKN 75 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHH
Confidence 345666666 55557999999999999999999854 6788886 5555543
No 104
>PRK00536 speE spermidine synthase; Provisional
Probab=96.18 E-value=0.0052 Score=47.66 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=36.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
-..+++||=||||.|..+++++| ||. +++++|+ ++|++.+++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLk-h~~-~v~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFK-YDT-HVDFVQADEKILDSFIS 112 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHC-cCC-eeEEEECCHHHHHHHHH
Confidence 35678999999999999999999 576 9999998 779988876
No 105
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0067 Score=47.58 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=40.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSYQ 165 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~ 165 (168)
.+++++|+=||||.|..++++++..|.-+.++.|+ |.|++.++.+.
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l 120 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYL 120 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhc
Confidence 45557999999999999999999888888999998 89999988663
No 106
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.15 E-value=0.0095 Score=46.16 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=34.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.....+|||||||+|..+..+++. .|..+++.+|. |..++.++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~ 119 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKAR 119 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHH
Confidence 556689999999999988877766 46678999998 77777655
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.14 E-value=0.0084 Score=37.97 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=28.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHh
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIK 159 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~ 159 (168)
+++|+|+|.|.++..+++ .+..+.+.+|.. ..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~ 35 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALE 35 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHH
Confidence 589999999999999999 778899999984 3444
No 108
>PRK14967 putative methyltransferase; Provisional
Probab=96.14 E-value=0.0098 Score=44.81 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
.....+|+|+|||+|.++..+++. +..+++.+|. |..++.
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRS 74 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHH
Confidence 455579999999999999998876 3458899998 445543
No 109
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.13 E-value=0.014 Score=44.38 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=29.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.+.+|+||||.|.+.+++++++|+.-.+.++.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi 80 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEI 80 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEE
Confidence 36999999999999999999999999988886
No 110
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.11 E-value=0.0074 Score=46.93 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
+...+|++||||.|.++..+++..+.-++++.|+ |.+++.++.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~ 114 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKK 114 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHH
Confidence 4556999999999999999998766677889887 667776654
No 111
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.03 E-value=0.019 Score=44.66 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
....++|+|||+|.+++.++..-|..+++..|.-.
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~ 182 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK 182 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccH
Confidence 34589999999999999999999999999999843
No 112
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.02 E-value=0.0048 Score=47.56 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=30.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|||||||.|.++..+++. ...++..|. +..|+.|+
T Consensus 91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~ 128 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVAN 128 (282)
T ss_pred ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHH
Confidence 67999999999999999998 577788887 55666554
No 113
>PHA03412 putative methyltransferase; Provisional
Probab=96.01 E-value=0.0075 Score=46.04 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCeEEEecCCccHHHHHHHHHC---CCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKY---PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~---P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|||+|||+|.+++.++++. +..+++.+|+ |..++.|+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar 93 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK 93 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH
Confidence 4699999999999999999875 4678899998 55565554
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.95 E-value=0.017 Score=46.11 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~~a~ 162 (168)
.+++..+ .+...+|+|||||+|.++..+++..+. -+++.+|. |+.++.|+
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar 122 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK 122 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 3455555 666689999999999999999998874 46788887 55555443
No 115
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.89 E-value=0.024 Score=42.00 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
.+++..+ .-...++||+|||.|..+.-|+++ +..++.+|.-
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s 61 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDIS 61 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESS
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECC
Confidence 5667777 556689999999999999999998 8899999973
No 116
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.89 E-value=0.012 Score=48.99 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++.++ .....+|+|+|||+|.+++.+++.. .+++.+|. |..++.|+
T Consensus 288 ~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~ 336 (443)
T PRK13168 288 RALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERAR 336 (443)
T ss_pred HHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHH
Confidence 4445455 4455799999999999999999885 57888887 55665544
No 117
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.87 E-value=0.012 Score=43.25 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=28.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
...+|+|||||+|.++..+++. ...+++.+|. |+.++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~ 51 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLA 51 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHH
Confidence 3468999999999999888765 4566777886 444443
No 118
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.86 E-value=0.011 Score=48.92 Aligned_cols=49 Identities=10% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.++..++ .....+|+|+|||+|..+..+++..++.+++.+|. |..++.+
T Consensus 235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~ 284 (427)
T PRK10901 235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERV 284 (427)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 3445555 55567999999999999999999998888999997 5555443
No 119
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=95.77 E-value=0.021 Score=42.91 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
.....+++|+|||.|..++.++++ ..+++.+|. |..++.
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQ 71 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHH
Confidence 344479999999999999999986 889999998 555554
No 120
>PLN02823 spermine synthase
Probab=95.71 E-value=0.012 Score=47.30 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=37.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY 164 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 164 (168)
...++|+-||||.|..+.++++..+.-+++++|+ |.|++.++.+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~ 146 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKH 146 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHh
Confidence 3567899999999999999998666778999998 8899988754
No 121
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.71 E-value=0.015 Score=42.22 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=31.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDA 161 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a 161 (168)
....+||++|+|+|..++.+++..+..++++-|.|++++..
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l 84 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELL 84 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHH
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHH
Confidence 34579999999999999999998888899999999877654
No 122
>PRK04148 hypothetical protein; Provisional
Probab=95.65 E-value=0.032 Score=38.92 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=34.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+.+.+. -....+++|||+|.|. ++..+.+. +..++..|. |..++.++
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~ 56 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK 56 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 3555555 3334789999999996 77777765 678999997 66666543
No 123
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.64 E-value=0.046 Score=41.59 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHcCCC-CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 111 KKILEIYKGF-EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 111 ~~~~~~~~~~-~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
..+++.+. . ....+++|||||+|.++..+++. +--+++.+|.-.
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~ 108 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGY 108 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCH
Confidence 35566665 3 24479999999999999999986 445789999843
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.60 E-value=0.016 Score=48.26 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=38.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~a 161 (168)
.++..++ .....+|+|+|||+|..+..+++.. |..+++.+|. |..++.+
T Consensus 241 lv~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~ 291 (444)
T PRK14902 241 LVAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLI 291 (444)
T ss_pred HHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 3444555 5556799999999999999999986 6789999998 6655544
No 125
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.59 E-value=0.02 Score=42.24 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
...+|+|+|||.|.++..+.+. .++++..+|+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEi 44 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEI 44 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCeEEEEec
Confidence 4479999999999999777774 6888766665
No 126
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.016 Score=42.64 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=30.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+.+ ++|+|+|||+|.++++.+-.-|. +++.+|. |+.++.++
T Consensus 44 l~g-~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r 85 (198)
T COG2263 44 LEG-KTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIAR 85 (198)
T ss_pred cCC-CEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHH
Confidence 444 68999999999999998887554 5677776 65555443
No 127
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.51 E-value=0.039 Score=43.90 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=30.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|+|+|||+|.+++.+++. ..+++.+|. |..++.|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHH
Confidence 379999999999999999984 468899997 66666554
No 128
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.29 E-value=0.075 Score=40.03 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=29.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhhC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKDA 161 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~a 161 (168)
...+|||||||+|.++..+++. ..+++..|.. ..++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a 86 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVA 86 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHH
Confidence 4578999999999999988886 4678888874 444433
No 129
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.25 E-value=0.011 Score=44.93 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
.++...+ ...+.+++|+|||+|..+.++...-..+. .+|+-
T Consensus 116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~lt--GvDiS 156 (287)
T COG4976 116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLT--GVDIS 156 (287)
T ss_pred HHHHhcc-CCccceeeecccCcCcccHhHHHHHhhcc--CCchh
Confidence 4455555 55689999999999999999888755554 44553
No 130
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.21 E-value=0.041 Score=40.93 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
..+++|+|||+|.++++++.+.. .+++.+|. |..++.+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a 92 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQL 92 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHH
Confidence 36899999999999998766654 57888886 5555543
No 131
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.21 E-value=0.053 Score=42.80 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=32.1
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
..+++..+ .....+|+|||||+|.+...+++... +++.+|+
T Consensus 26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEi 66 (294)
T PTZ00338 26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEI 66 (294)
T ss_pred HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEEC
Confidence 35666666 66668999999999999999999854 5666665
No 132
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=95.17 E-value=0.033 Score=42.69 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=41.5
Q ss_pred HHHHHHcC-CCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 111 KKILEIYK-GFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 111 ~~~~~~~~-~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+.+++.+. +|-....++||||..|.+++.+++.+-....+.+|. |.-|+.|+
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ar 99 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRAR 99 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHH
Confidence 34555554 266678999999999999999999999999999998 44555554
No 133
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.10 E-value=0.043 Score=43.38 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=28.6
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFD 153 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 153 (168)
+...++++++ ++|+|||||+|-++..++++-|. .++.+|
T Consensus 107 l~p~l~~L~g-k~VLDIGC~nGY~~frM~~~GA~-~ViGiD 145 (315)
T PF08003_consen 107 LLPHLPDLKG-KRVLDIGCNNGYYSFRMLGRGAK-SVIGID 145 (315)
T ss_pred HHhhhCCcCC-CEEEEecCCCcHHHHHHhhcCCC-EEEEEC
Confidence 3444432555 79999999999999999998554 256666
No 134
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.02 E-value=0.055 Score=40.81 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=31.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
.....+|+|+|||.|..++.|+++ +.+++.+|. |..++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQ 74 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHH
Confidence 344479999999999999999985 889999998 444554
No 135
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.02 E-value=0.033 Score=40.40 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHHHHcCCCC--CCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchHH
Q 030988 111 KKILEIYKGFE--EINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPHV 157 (168)
Q Consensus 111 ~~~~~~~~~~~--~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~v 157 (168)
..+.+.|+-++ ...++||+|+++|.++..++++. +..+++.+|+...
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45666666233 35899999999999999999998 7788899998654
No 136
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.95 E-value=0.07 Score=39.74 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.++...+ .....+|+|||||+|.++..+++... +++.+|. |..++.+
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a 116 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEA 116 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHH
Confidence 3444555 66678999999999999887777653 5666775 5555444
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.83 E-value=0.033 Score=41.63 Aligned_cols=38 Identities=21% Similarity=0.027 Sum_probs=29.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
...+|+|+|||+|.++..+++..+ +++..|+ |..++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a 83 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVA 83 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHH
Confidence 357999999999999999888654 5888887 3444443
No 138
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.79 E-value=0.044 Score=44.68 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=29.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|+|++||+|.+++.++.. ..+++.+|. |..++.++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~ 272 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQ 272 (374)
T ss_pred CEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHH
Confidence 68999999999999999864 467888886 55665444
No 139
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.74 E-value=0.028 Score=43.22 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSY 164 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~ 164 (168)
...++||=||||.|..+.++++..|..+++++|+ |.|++.++.+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~ 119 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKY 119 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHh
Confidence 4678999999999999999998666778999998 8888887643
No 140
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=94.73 E-value=0.041 Score=40.53 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=29.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
.+++|++||+|.++++++.+... +++.+|. +..++.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~ 87 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQT 87 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHH
Confidence 68999999999999999999764 7888887 444443
No 141
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.70 E-value=0.042 Score=41.03 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=26.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
+||.||.|+|+.+..+++++|+++-.==|.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~ 57 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDP 57 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCC
Confidence 599999999999999999999998644444
No 142
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=94.64 E-value=0.059 Score=39.65 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=25.9
Q ss_pred CCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHHhhC
Q 030988 122 EINQLVDVAGGLGANISLLVSK-YPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl-P~vi~~a 161 (168)
+..+|||+|||+|+++..|++. ++. +-+..|. |..++.|
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA 107 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELA 107 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHH
Confidence 3349999999999999998876 333 2244454 3344433
No 143
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=94.59 E-value=0.065 Score=44.44 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=35.5
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
+.+... .....+|+|+|||+|.+++.+++.. -+++.+|. |..++.|+
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~ 331 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQ 331 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHH
Confidence 344444 5556799999999999999999874 36788887 66766654
No 144
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.57 E-value=0.13 Score=39.14 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=34.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
..+.+++||||+|+|.-++.+++..| +-+++.+|. |+.++.|+
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~ 110 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL 110 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 44568999999999999999998865 678999998 55666554
No 145
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.56 E-value=0.043 Score=46.55 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
....+||||||.|.+...+++++|+..++.+|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~ 379 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEV 379 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEe
Confidence 358999999999999999999999999988886
No 146
>PTZ00146 fibrillarin; Provisional
Probab=94.54 E-value=0.075 Score=41.88 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=29.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccch
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDLP 155 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~DlP 155 (168)
+..-.+|||+|||+|.++..+++... .=+++.+|.-
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s 166 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS 166 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc
Confidence 55667999999999999999999863 4478888864
No 147
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.49 E-value=0.065 Score=38.00 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=33.6
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe-EEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR-GINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-P~vi~~a 161 (168)
.+-+.|+++++ +.+.|+|||.|-++ +.-.+|..+ ++.||+ |+.++..
T Consensus 39 ~Ih~TygdiEg-kkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf 87 (185)
T KOG3420|consen 39 TIHNTYGDIEG-KKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIF 87 (185)
T ss_pred HHHhhhccccC-cchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHH
Confidence 34556663554 79999999999999 444566765 689998 6666543
No 148
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.32 E-value=0.083 Score=42.93 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=35.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQI-RGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dl-P~vi~~a~ 162 (168)
+..+++-+|||.|..+++++| ||+. +.+..|| |.+||.++
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhh
Confidence 457899999999999999987 8965 6899999 89999877
No 149
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=94.25 E-value=0.057 Score=44.76 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=37.6
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
.++..++ .....+|+|+|+|+|..+..+++..|..+++.+|. |..++.
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~ 277 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR 277 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 3455555 55557999999999999999999988778899997 555543
No 150
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=94.13 E-value=0.07 Score=42.80 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=32.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 162 (168)
.-++|+|||||+|.+++-.+++. --++..+|--++++.|.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~ 99 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFAR 99 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHH
Confidence 34899999999999999999987 55678888776666554
No 151
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=94.10 E-value=0.1 Score=39.13 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=34.7
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++.++ ...-.+|+|||+|+|.++.-+++..- .-+++.+|. |..++.|+
T Consensus 63 ~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~ 114 (209)
T PF01135_consen 63 RMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERAR 114 (209)
T ss_dssp HHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH
T ss_pred HHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHH
Confidence 4677777 88888999999999999988888743 335666664 66666554
No 152
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=93.95 E-value=0.14 Score=38.65 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
..+++|||.|.|.=++-++=.+|+++++++|-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles 99 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLES 99 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEcc
Confidence 58999999999998888888999999999983
No 153
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=93.89 E-value=0.15 Score=37.44 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=27.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
+++|||.|.|.=++-++=.+|+++++++|-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs 80 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVES 80 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeC
Confidence 899999999999999999999999999984
No 154
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=93.85 E-value=0.059 Score=40.81 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHcCCCCC--CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 113 ILEIYKGFEE--INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~--~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.++..+ +.. ..-|+|||||+|.-+..+... ....+.+|. |+.++.|.
T Consensus 40 aLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~ 89 (270)
T KOG1541|consen 40 ALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAV 89 (270)
T ss_pred HHHHhh-CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHH
Confidence 344444 444 689999999999887777654 567788887 66666654
No 155
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.77 E-value=0.15 Score=40.71 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=34.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.++.... +....+|+|+|||+|.++++.+.. ..+++..|. |..++.+
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a 220 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGA 220 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHH
Confidence 3444445 666779999999999999887654 678888898 5555543
No 156
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=93.73 E-value=0.44 Score=35.80 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=35.8
Q ss_pred chhHHhHhcHHHHHHHHHHHHH----hhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 83 NPFEYAMKAARRRNLFNQSMHN----HAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 83 ~~~e~~~~~p~~~~~f~~~m~~----~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.-++.+.++|+.-+.|+++-+. +-....+.+++.+..-+....|.|.|||.+.++.++.+ ..++.-|||
T Consensus 29 ~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDL 101 (219)
T PF05148_consen 29 EALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDL 101 (219)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEES
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeec
Confidence 4556677888765545444332 11123345666665233457999999999999977643 345666776
No 157
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.59 E-value=0.042 Score=41.02 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=27.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
-..++|||||.|.++..+...||+--.+.++.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehh
Confidence 36899999999999999999999976655554
No 158
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.53 E-value=0.17 Score=39.15 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.+..+++..+ ......|+|||.|.|.+...+++.. -+.++++.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~ 60 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEI 60 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEES
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecC
Confidence 3457788887 7778899999999999999999997 55555554
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=93.51 E-value=0.16 Score=42.44 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=41.4
Q ss_pred CchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCC---CCCCeEEEecCCccHHHHHHHHHC----CCCeEEEccc
Q 030988 82 KNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGF---EEINQLVDVAGGLGANISLLVSKY----PQIRGINFDL 154 (168)
Q Consensus 82 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~---~~~~~vvDvGGg~G~~~~~l~~~~----P~l~~~v~Dl 154 (168)
...||.+++||..-+.|.+++.. .+.+....- .....|+|||+|+|.++...+++- -..++..++-
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk 222 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK 222 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES
T ss_pred cccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 46788888898877777777522 333333311 125789999999999987776654 3456666664
No 160
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.20 E-value=0.17 Score=38.80 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=34.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCC--CeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQ--IRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~--l~~~v~Dl-P~vi~~a~ 162 (168)
.+|+.||||.|...--+++.+|+ |+...+|. |..|+..+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 38999999999999999999999 99999997 66666554
No 161
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.14 E-value=0.37 Score=35.67 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=35.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccchHHH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDLPHVI 158 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~DlP~vi 158 (168)
.+-+.|.-++...+|+|+|+.+|.++.-..++- |+=.+..+|+-++.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~ 106 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE 106 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc
Confidence 344455534567899999999999998776665 99888999986544
No 162
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=93.07 E-value=0.18 Score=40.80 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=29.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++|++||+|.+++.+++... +++.+|. ++.++.++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHH
Confidence 3699999999999999998864 7788886 55555444
No 163
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.41 E-value=0.31 Score=36.43 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=28.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.+++.+. +.....++|||+|.|......+..++--+++.+++
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi 74 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEI 74 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEe
Confidence 4556666 77778999999999999888887777666777775
No 164
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=92.20 E-value=0.22 Score=41.48 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=35.1
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhh
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKD 160 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~ 160 (168)
+....+ .....+|+|+|+|+|..+..+++.. +.-+++.+|+ +.-++.
T Consensus 229 ~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~ 277 (431)
T PRK14903 229 VPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQL 277 (431)
T ss_pred HHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence 333445 5556799999999999999998876 5678899997 444443
No 165
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=91.84 E-value=0.3 Score=39.71 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=28.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++|++||+|.+++.+++... +++.+|. |..++.++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHH
Confidence 4699999999999999998864 6777776 44554443
No 166
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=91.83 E-value=0.15 Score=39.07 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSYQ 165 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~ 165 (168)
..+.++|||||+|+.++.++..|.+ +|..|. +..++.+++.+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHP 75 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCC
Confidence 4459999999999888888887655 466676 55666666554
No 167
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=91.75 E-value=0.27 Score=39.71 Aligned_cols=43 Identities=14% Similarity=0.014 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
....++||||+++|.++.-++++ +.+++.+|.-+..+.....+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~ 252 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTG 252 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCC
Confidence 35589999999999999999998 66999999655444333333
No 168
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=91.66 E-value=0.59 Score=36.26 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
...+++..+ .+....|+.||.|.|.+...++++-..+.++=.|.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~ 62 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDR 62 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH
Confidence 456777777 66678999999999999999999988877777764
No 169
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.37 E-value=0.51 Score=36.84 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe-EEEccc
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR-GINFDL 154 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl 154 (168)
.+....++|. ..+|||+|+|+|..+.++...+|.+. .+++|.
T Consensus 24 El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~ 66 (274)
T PF09243_consen 24 ELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDR 66 (274)
T ss_pred HHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecC
Confidence 3444444344 46999999999999999999999764 688886
No 170
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=91.21 E-value=0.22 Score=37.03 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 115 EIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 115 ~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..++ -....+++++|||.|.+...|+.+. -+.++.|. |..++.|+
T Consensus 37 aaLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar 82 (201)
T PF05401_consen 37 AALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARAR 82 (201)
T ss_dssp HHHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHH
T ss_pred HhcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHH
Confidence 3466 5677899999999999999999884 46788898 77777665
No 171
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.75 E-value=1.3 Score=33.20 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccchH
Q 030988 101 SMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDLPH 156 (168)
Q Consensus 101 ~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~DlP~ 156 (168)
+..+.+......+.+.|.-++....|+|+|..+|.++.-+++.-.. -+++.+|+-+
T Consensus 24 gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 24 GYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred cccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 3444555555677777764678899999999999999976665443 5578888643
No 172
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=90.48 E-value=0.38 Score=40.17 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDA 161 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a 161 (168)
.....+|+|+|||+|..+..+++..+ .-+++.+|. |.-++.+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~ 291 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKI 291 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH
Confidence 44457999999999999988887654 457899997 4444433
No 173
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.67 Score=34.78 Aligned_cols=48 Identities=13% Similarity=0.333 Sum_probs=35.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+++..+ .+...+|++||+|+|-.+.-+++.-- +++-+++ ++..+.|+
T Consensus 63 ~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~ 111 (209)
T COG2518 63 RMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQAR 111 (209)
T ss_pred HHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHH
Confidence 4566677 88889999999999998888877644 6666665 44444443
No 174
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=89.94 E-value=0.5 Score=39.33 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=35.5
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDA 161 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a 161 (168)
++..++ .....+|+|+|+|+|..+..+++... .-+++.+|. ++-++.+
T Consensus 244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~ 293 (434)
T PRK14901 244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKL 293 (434)
T ss_pred HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence 344455 55557999999999999999998864 468899997 5444433
No 175
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=89.85 E-value=0.47 Score=37.42 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCC--CeEEEccc-hHHHhh
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQ--IRGINFDL-PHVIKD 160 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~--l~~~v~Dl-P~vi~~ 160 (168)
....+||||.||+|.+....+..+|. .++.+-|. |.-++.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~ 176 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEK 176 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHH
Confidence 35689999999999999999999998 67888887 544443
No 176
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.56 E-value=1.5 Score=31.97 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=40.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhh
Q 030988 97 LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKD 160 (168)
Q Consensus 97 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~ 160 (168)
.++..+...+...-..+.+.+....+..+||-+|+|-=.....+...+++++.+=+|+|+|++.
T Consensus 53 ~~~~~~~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~ 116 (183)
T PF04072_consen 53 GINRGYAARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIAL 116 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHH
Confidence 3444544444443222333231023456999999999999999999888999999999999874
No 177
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=89.54 E-value=0.5 Score=38.76 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=32.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.+|+|+++|+|.+++.+++..+..+++..|. |..++.++
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~ 98 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK 98 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999888668899997 66665543
No 178
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.53 E-value=0.32 Score=40.96 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCe
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIR 148 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~ 148 (168)
...++++|||||.|.++..++.+ ++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~ 141 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVT 141 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--Cce
Confidence 45799999999999999999998 544
No 179
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=89.49 E-value=1 Score=35.83 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=41.9
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+++.+. ......+||.=.|.|..+.+++++.|+.+++.+|. |..++.++
T Consensus 10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak 61 (305)
T TIGR00006 10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK 61 (305)
T ss_pred HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 45677666 55557999999999999999999998889999998 66776654
No 180
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=89.16 E-value=0.61 Score=34.87 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
..+.++||.||++.|.-++.++++.| +.+++.+|. |+..+.|+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~ 87 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR 87 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH
Confidence 34568999999999999999999988 478988887 55555543
No 181
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=88.94 E-value=0.51 Score=38.87 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=29.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+|+|+|||+|.++++.+.. ...+++.+|. |..++.++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~ 260 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIAR 260 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence 478999999999998876653 3458899997 55555443
No 182
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=88.84 E-value=0.73 Score=35.67 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=31.3
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHHh
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDL-PHVIK 159 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~Dl-P~vi~ 159 (168)
.....+|+|+|+|+|..+..+++...+ -+++.+|. |.-++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~ 110 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTK 110 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 445579999999999999999887754 57888887 44444
No 183
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=88.71 E-value=1.4 Score=35.71 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=17.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHHH
Q 030988 120 FEEINQLVDVAGGLGANISLLVSK 143 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~ 143 (168)
|+. +.|||||+|+|.++.-.+++
T Consensus 176 F~~-kiVlDVGaGSGILS~FAaqA 198 (517)
T KOG1500|consen 176 FQD-KIVLDVGAGSGILSFFAAQA 198 (517)
T ss_pred cCC-cEEEEecCCccHHHHHHHHh
Confidence 655 79999999999877655544
No 184
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.23 E-value=1.9 Score=35.43 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=24.9
Q ss_pred CCCeEEEecCCccHHHH--------HHHHH-------CCCCeEEEccch
Q 030988 122 EINQLVDVAGGLGANIS--------LLVSK-------YPQIRGINFDLP 155 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~--------~l~~~-------~P~l~~~v~DlP 155 (168)
+.-.|+|+|||+|..+. ++.++ -|++++..=|||
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP 111 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP 111 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence 45689999999996543 23332 367888999998
No 185
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=88.07 E-value=2 Score=33.48 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=29.7
Q ss_pred HHHHHcCCCC-CCCeEEEecCCcc---HHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 112 KILEIYKGFE-EINQLVDVAGGLG---ANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~-~~~~vvDvGGg~G---~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..++.+. -. ++.++||||+|.- ..-.-..+..|+.+++-.|- |-|+..++
T Consensus 58 RaVr~la-~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~r 112 (267)
T PF04672_consen 58 RAVRYLA-EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHAR 112 (267)
T ss_dssp HHHHHHH-CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCH
T ss_pred HHHHHHH-HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHH
Confidence 3445444 34 7899999999976 45555577799999999997 77777765
No 186
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=87.59 E-value=1.1 Score=35.63 Aligned_cols=51 Identities=27% Similarity=0.333 Sum_probs=38.4
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
..+++.+. ......+||.==|.|.++.++++++|+.+.+.+|+ |..++.++
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~ 61 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK 61 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH
Confidence 46677776 66667999999999999999999999999999998 77776554
No 187
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=87.48 E-value=0.68 Score=40.99 Aligned_cols=39 Identities=8% Similarity=-0.027 Sum_probs=30.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
.++|+|+|||+|.+++.+++. ..-+++.+|. +..++.++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~ 578 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAE 578 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence 479999999999999999986 3336899998 55666554
No 188
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.17 E-value=2.6 Score=32.75 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEccch
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKY-----PQIRGINFDLP 155 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~-----P~l~~~v~DlP 155 (168)
+.+...+|+.|+|.|.++..+.+.. +..+.+++|+-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 6677899999999999999999999 56678999973
No 189
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=86.14 E-value=1.6 Score=33.14 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=32.2
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhh
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKD 160 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~ 160 (168)
.....+|++.|||.|..+.-|++. +.+++.+|+ |..|+.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLS 80 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHH
Confidence 334479999999999999999997 888999999 555555
No 190
>PLN02476 O-methyltransferase
Probab=86.08 E-value=1.3 Score=34.74 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=34.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
..+.++||+||.++|..++.+++.-| +-+++-+|. |+..+.|+
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar 160 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK 160 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 55679999999999999999998876 557888888 55555554
No 191
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=86.07 E-value=7.6 Score=27.68 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 95 RNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 95 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.++|.+.|.+.... ....++...+.. .-|+++|=|+|-.=-.+.+.+|+=+..|||+
T Consensus 4 LDsfi~RmtaQR~~-L~~a~~~v~~~~--G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 4 LDSFIRRMTAQRDC-LNWAAAQVAGLP--GPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCCC--CceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 56788888664332 334555555233 5899999999999999999999999999997
No 192
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=85.87 E-value=1.2 Score=37.76 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=31.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
++.-..++||-||+|.+++++++. -.+++.+.+ |+.++.|+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhh
Confidence 666699999999999999999886 455655544 77777666
No 193
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=85.80 E-value=1.5 Score=33.12 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.....+|++.|||.|..+..|+++ +.+++.+|+ |..|+.+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQA 75 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHH
Confidence 455679999999999999999997 789999999 5566554
No 194
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.80 E-value=2.1 Score=33.65 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
...+++.-+ ......|+.||.|+|.+...++++ ..+++.++.
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~ 88 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEI 88 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEec
Confidence 456777788 888899999999999999999998 445544443
No 195
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=85.52 E-value=1.6 Score=35.14 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCe-EEEccc-hHHHhhC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIR-GINFDL-PHVIKDA 161 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-P~vi~~a 161 (168)
...+|||+|||.|..+.-..++ +++ .+..|. +..|++|
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea 101 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEA 101 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHH
Confidence 5689999999999988888876 444 577887 3455544
No 196
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=84.63 E-value=5.4 Score=29.15 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHH
Q 030988 107 ALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSK 143 (168)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~ 143 (168)
...+..+++..+ |++..-|+.+|-|+|-+..+++++
T Consensus 34 s~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~ 69 (194)
T COG3963 34 SILARKMASVID-PESGLPVLELGPGTGVITKAILSR 69 (194)
T ss_pred HHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhc
Confidence 345667788888 999889999999999999998875
No 197
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=83.70 E-value=6.7 Score=31.34 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=23.3
Q ss_pred CCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEccc
Q 030988 123 INQLVDVAGGLGANISLLVSKY--------------------PQIRGINFDL 154 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~--------------------P~l~~~v~Dl 154 (168)
..+||-||||.|.=..+++..+ |.+..+++|.
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDi 138 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDI 138 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEe
Confidence 3699999999997555555544 3367788886
No 198
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=83.36 E-value=2.3 Score=30.97 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR---------GINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~---------~~v~Dl-P~vi~~a 161 (168)
.++.... |.....|+|-=||+|.++++.+...++.. .+..|. |..++.+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a 77 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGA 77 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHH
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHH
Confidence 4555556 77778999999999999999888888877 778886 5555543
No 199
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=83.34 E-value=0.88 Score=38.78 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=29.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEccc-hHHHh
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQ--------IRGINFDL-PHVIK 159 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~--------l~~~v~Dl-P~vi~ 159 (168)
...+|+|.+||+|.++.+++++.+. +..+.+|. |..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~ 77 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK 77 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence 4569999999999999999988763 44577776 44443
No 200
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=83.01 E-value=1.8 Score=33.65 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
...+++|||.|.|.....++..+.++.+|=.-.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~ 127 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP 127 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHH
Confidence 3578999999999999999999998776654443
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=82.73 E-value=2.2 Score=31.75 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.3
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHh
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIK 159 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~ 159 (168)
....+|+|+-||.|.+++.+++..+..+++..|+ |..++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~ 139 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE 139 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH
Confidence 4457999999999999999999888888999998 55554
No 202
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=81.57 E-value=2.2 Score=34.93 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=36.5
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccH----HHHHHHHHC---CCCeEEEccchH
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGA----NISLLVSKY---PQIRGINFDLPH 156 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~----~~~~l~~~~---P~l~~~v~DlP~ 156 (168)
+.|++++. -+...+|||+|-|.|. +..+|+++. |.++.|.++.|.
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~ 151 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPN 151 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCC
Confidence 46888887 5677899999999994 666777764 889999999964
No 203
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.31 E-value=2.4 Score=34.60 Aligned_cols=41 Identities=17% Similarity=0.425 Sum_probs=31.3
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeE-EEccc
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRG-INFDL 154 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~-~v~Dl 154 (168)
+-...++|+. ++|+|||-|+|.-+.+.-.-+|+++. +++..
T Consensus 105 L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~ 146 (484)
T COG5459 105 LQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEA 146 (484)
T ss_pred HHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhcc
Confidence 3334443544 57999999999999999999999974 66664
No 204
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=80.94 E-value=6.5 Score=30.79 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=34.1
Q ss_pred chhHHhHhcHHHHHHHHHHHHHhhH----HHHHHHHHHcCCCCCCCeEEEecCCccHHHH
Q 030988 83 NPFEYAMKAARRRNLFNQSMHNHAA----LVMKKILEIYKGFEEINQLVDVAGGLGANIS 138 (168)
Q Consensus 83 ~~~e~~~~~p~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~ 138 (168)
.-+..+.++|..-..|+++....-. ...+.+++.+..-+....|-|+|||.+.++.
T Consensus 137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh
Confidence 3455566788766666665443221 1223455555412345789999999999886
No 205
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=80.16 E-value=4.7 Score=27.22 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=35.1
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCCCCe-EEEccchHHHhhCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYPQIR-GINFDLPHVIKDAP 162 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~-~~v~DlP~vi~~a~ 162 (168)
.+++.++.-.+.-.++|+-||+-. .+..+...++++. .+..++|-+++...
T Consensus 49 ~~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~~~~~visG~nlpmlle~~~ 101 (122)
T cd00006 49 AALAELDSGEGVLILTDLFGGSPNNAAARLSMEHPPVEVIAGVNLPMLLEAAR 101 (122)
T ss_pred HHHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEccCHHHHHHHHH
Confidence 344555524567889999555554 5666666668876 48999999988654
No 206
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=79.99 E-value=3.3 Score=31.37 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
.++.++++.||.+.|.-++-++..-| +-+.|-+|+ |+-++.|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~ 101 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAR 101 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHH
Confidence 56789999999999999999999999 778899998 55666555
No 207
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.59 E-value=4.2 Score=31.13 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC--------eEEEccch
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQI--------RGINFDLP 155 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l--------~~~v~DlP 155 (168)
..-+||++|+|+|.++..+++..... +.++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 34799999999999999988865544 56666643
No 208
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=78.07 E-value=6.7 Score=30.26 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHHHHhhHHHH----HHHHHHcCCCCCCCeEEEecCCccHHHHHHHH-HCCCCeEEEccc
Q 030988 97 LFNQSMHNHAALVM----KKILEIYKGFEEINQLVDVAGGLGANISLLVS-KYPQIRGINFDL 154 (168)
Q Consensus 97 ~f~~~m~~~~~~~~----~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~-~~P~l~~~v~Dl 154 (168)
.|...|...++... ..++-..+ ...-.+||+.|-|+|.++..|++ -.|+=++.-||.
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~ 73 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF 73 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc
Confidence 46667777666542 24666677 88889999999999999999996 458778888875
No 209
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=78.00 E-value=20 Score=28.04 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=32.1
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCCC-----CeEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGA----NISLLVSKYPQ-----IRGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~----~~~~l~~~~P~-----l~~~v~Dl-P~vi~~a~ 162 (168)
+.-+|--.||++|. +++.+++..|. .+++.-|. ..+++.|+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 46799999999994 77778888874 56677787 56888776
No 210
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=77.40 E-value=7.8 Score=30.00 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHHhhHHH----HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHH-HCCCCeEEEccc
Q 030988 101 SMHNHAALV----MKKILEIYKGFEEINQLVDVAGGLGANISLLVS-KYPQIRGINFDL 154 (168)
Q Consensus 101 ~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~-~~P~l~~~v~Dl 154 (168)
.|...++.. +..++.... .+.-.+|+|.|-|+|.++..|++ -.|.=+++.+|.
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~ 127 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEI 127 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEe
Confidence 355555543 224566666 88889999999999999999997 667788888885
No 211
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=76.69 E-value=11 Score=29.06 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhhCCC
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKDAPS 163 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~a~~ 163 (168)
+.++++.|||||.|++...+..+. --+.|..|.- ..++.++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhc
Confidence 356899999999999999999885 2256777764 34555543
No 212
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=75.97 E-value=13 Score=30.39 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=32.7
Q ss_pred hcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC
Q 030988 90 KAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKY 144 (168)
Q Consensus 90 ~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~ 144 (168)
..|+..+.|-+..+.. ..+ ...... -.....+|.+|.|+|.++.-+++..
T Consensus 50 TApels~lFGella~~---~~~-~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 50 TAPELSQLFGELLAEQ---FLQ-LWQELG-RPAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred echhHHHHHHHHHHHH---HHH-HHHHhc-CCCCceEEEeCCCcChHHHHHHHHH
Confidence 5688888888775332 222 222232 3445789999999999887776543
No 213
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=75.66 E-value=8.5 Score=30.65 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=44.1
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe-EEEccc-hHHHhhCCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR-GINFDL-PHVIKDAPS 163 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~Dl-P~vi~~a~~ 163 (168)
..+++.+. .......||.==|.|.++.++++.+|.+. .+.+|+ |..++.|+.
T Consensus 13 ~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~ 66 (314)
T COG0275 13 NEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE 66 (314)
T ss_pred HHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH
Confidence 45677776 66668999999999999999999999987 899998 778887763
No 214
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=74.63 E-value=9.6 Score=29.09 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=42.7
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSY 164 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~ 164 (168)
..+++.. ..-.+|+.||=|.|.....+-++-|..+.|+---|.|....+..
T Consensus 93 a~A~ai~--tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~ 143 (271)
T KOG1709|consen 93 ALAEAIS--TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW 143 (271)
T ss_pred HHHHHHh--hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc
Confidence 3444443 55689999999999999999999999999999999999887754
No 215
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=74.19 E-value=14 Score=28.53 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=35.9
Q ss_pred HHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccchHHHhh
Q 030988 101 SMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDLPHVIKD 160 (168)
Q Consensus 101 ~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~DlP~vi~~ 160 (168)
.+...+++. +.++..+- -.+..+||.+|+|-=.-...+ .+| +++..=+|+|+|++.
T Consensus 62 ~~~~Rtr~~-D~~i~~~~-~~g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~P~v~~~ 118 (260)
T TIGR00027 62 FIAVRTRFF-DDFLLAAV-AAGIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQPAVLAF 118 (260)
T ss_pred HHHHHHHHH-HHHHHHHH-hcCCcEEEEeCCccccHHHhc--CCCCCCeEEECCChHHHHH
Confidence 444444443 34444332 245678999999876666555 344 588899999999873
No 216
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=74.19 E-value=4.4 Score=33.37 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=32.1
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHV 157 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~v 157 (168)
.++..+..+-+..++||||.|.|+++.-+.-.| ++++..+|=-++
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~ 187 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQR 187 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchH
Confidence 444444337788999999999999988766544 677776665443
No 217
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=73.80 E-value=11 Score=25.31 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=35.3
Q ss_pred HHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCCCCeE-EEccchHHHhhCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYPQIRG-INFDLPHVIKDAP 162 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~~-~v~DlP~vi~~a~ 162 (168)
+++.++.-.+.-.+.|+=||+-. .+..+...+|++++ +.+.+|-+++.+.
T Consensus 51 ~i~~~~~~~~vivltDl~GGSp~n~a~~~~~~~~~~~vIsG~NLpmlle~~~ 102 (116)
T TIGR00824 51 ALADLDTEEEVLFLVDIFGGSPYNAAARIIVDKPHMDVIAGVNLPLLLETLM 102 (116)
T ss_pred HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHhhcCCEEEEEecCHHHHHHHHH
Confidence 44445423456788999777765 45556677899985 8999999988654
No 218
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.38 E-value=13 Score=29.75 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=36.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHC--CCCeEEEccchHHHhh
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKY--PQIRGINFDLPHVIKD 160 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~--P~l~~~v~DlP~vi~~ 160 (168)
+....+||-+|||.=...-.++..+ +.++.+=+|.|++++.
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~r 127 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVER 127 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHH
Confidence 3466899999999999999999998 8889999999998874
No 219
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=72.78 E-value=4.3 Score=33.93 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=26.9
Q ss_pred CeEEEecCC-ccHHHH-HHHHHCCCCeEEEccchHH
Q 030988 124 NQLVDVAGG-LGANIS-LLVSKYPQIRGINFDLPHV 157 (168)
Q Consensus 124 ~~vvDvGGg-~G~~~~-~l~~~~P~l~~~v~DlP~v 157 (168)
..||=|||| +|..+. .|+++.|.++++|+|.-.+
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 468889998 787544 7888889999999997544
No 220
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=71.66 E-value=6.5 Score=30.28 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=33.8
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~Dl-P~vi~~a~ 162 (168)
..+.+++|.||.+.|.-++.+++..| +-+++-+|. |+..+.|+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar 121 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL 121 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence 44568999999999999999998865 678888887 55555554
No 221
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=71.33 E-value=20 Score=28.52 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=39.3
Q ss_pred HHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC--CCeEEEccchHHH
Q 030988 98 FNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP--QIRGINFDLPHVI 158 (168)
Q Consensus 98 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P--~l~~~v~DlP~vi 158 (168)
..+.+..........+.+.+..++...+|+=+|||.-.+..++.+.+| +-++++.|=|+..
T Consensus 248 v~~~i~~~~~~l~~~i~~~~~~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfA 310 (318)
T PF06406_consen 248 VSEVIEEAVEELINRILRELGDFSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFA 310 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhh
Confidence 333443333333345555544377778888899999999999999987 5678999988743
No 222
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=71.20 E-value=3.9 Score=31.56 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=27.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
...+|+|||||.--++.-.....|+++.+.+|.-
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID 138 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCC
Confidence 4789999999999999998998999998888874
No 223
>PRK09273 hypothetical protein; Provisional
Probab=67.46 E-value=4.6 Score=30.33 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=31.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
...=++||+|.=..-.+.++|++++.++--|.....++.+.
T Consensus 65 d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~hN 105 (211)
T PRK09273 65 DFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQIN 105 (211)
T ss_pred CEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhc
Confidence 34448999999999999999999986655576666665443
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=67.13 E-value=11 Score=29.54 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEccc-hHHH
Q 030988 120 FEEINQLVDVAGGLGANISLLVSK-------YPQIRGINFDL-PHVI 158 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~-------~P~l~~~v~Dl-P~vi 158 (168)
-....+|+|-.||+|.++.++.+. .+..+...+|. |..+
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~ 90 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV 90 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH
Confidence 455568999999999999998874 47778888887 4343
No 225
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=66.92 E-value=8.7 Score=29.68 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=31.5
Q ss_pred CC-CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHhhCC
Q 030988 120 FE-EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIKDAP 162 (168)
Q Consensus 120 ~~-~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~ 162 (168)
|. ....+|-+|+|+|..++..+. .....+++-|.|.+++.-+
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLK 125 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHH
Confidence 54 467899999999955554444 5788899999998877543
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=66.53 E-value=7.3 Score=31.93 Aligned_cols=38 Identities=11% Similarity=0.186 Sum_probs=31.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCC-eEEEccc-hHHHhhC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQI-RGINFDL-PHVIKDA 161 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~Dl-P~vi~~a 161 (168)
.+++|.-+|+|..++..+++-++. +++..|. |..++.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i 85 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESI 85 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH
Confidence 589999999999999999987665 5788887 6555543
No 227
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=63.38 E-value=7.9 Score=25.81 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHH-HHHHHHHCCCCe-EEEccchHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGAN-ISLLVSKYPQIR-GINFDLPHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~-~~~l~~~~P~l~-~~v~DlP~vi~~a 161 (168)
..++.++.-.+.-.++|++||+-.. +...+..+|+++ .+..++|-+++.+
T Consensus 49 ~~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G~Nlpmlle~~ 100 (116)
T PF03610_consen 49 EAIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISGVNLPMLLEAL 100 (116)
T ss_dssp HHHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES--HHHHHHHH
T ss_pred HHHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEecccHHHHHHHH
Confidence 3445565245678999999999864 445666777875 4889999888754
No 228
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=62.73 E-value=9.2 Score=29.02 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=28.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
..+.||||-++-+.+.+++.+|..+++.-|.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV 48 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEV 48 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeec
Confidence 3499999999999999999999999988775
No 229
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=61.99 E-value=44 Score=26.97 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=31.6
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
.+...+.......+|+=+|||.-.+-..+.+.||++ .+.|-|.
T Consensus 281 ~i~~~~~~~~~~d~IiL~GGGA~ll~~~lk~~f~~~--~~~~~p~ 323 (344)
T PRK13917 281 GFEIAVGNINSFDRVIVTGGGANIFFDSLSHWYSDV--EKADESQ 323 (344)
T ss_pred HHHHHhcccCCCCEEEEECCcHHHHHHHHHHHcCCe--EEcCChH
Confidence 444444335667788889999999888899999976 5667664
No 230
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=61.62 E-value=9.5 Score=28.26 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=27.5
Q ss_pred CCeEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHHhh
Q 030988 123 INQLVDVAGGLGANISLLVSKY-PQIRGINFDL-PHVIKD 160 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl-P~vi~~ 160 (168)
...+++||||+|..+..+.+.. |+.-...-|+ |+..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~ 83 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA 83 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH
Confidence 5889999999998877766543 5566677776 554443
No 231
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=61.41 E-value=12 Score=27.76 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccH--HHHH--HHHHC---C--CCeEEEccc-hHHHhhCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGA--NISL--LVSKY---P--QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~--~~~~--l~~~~---P--~l~~~v~Dl-P~vi~~a~ 162 (168)
|.+++... -...-+|...||++|. ++++ +.+.. . ..+.+.-|. +.+++.|+
T Consensus 21 p~~~~~~~-~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 21 PPLLARAR-PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp -------C-S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred HhhccccC-CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 34444333 2356799999999995 4444 33311 2 345677777 66777665
No 232
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=61.13 E-value=5.1 Score=28.13 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=28.2
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+.||+|.=..-.+.++|++++.+.--|.....++.+.
T Consensus 62 liCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hN 98 (140)
T PF02502_consen 62 LICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHN 98 (140)
T ss_dssp EEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT
T ss_pred EEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhc
Confidence 7789999888899999999998888788777776554
No 233
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=61.06 E-value=20 Score=29.38 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=29.0
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCCe
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQIR 148 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 148 (168)
...++.+|.+.++..+-++|||+|. ++..+...||+..
T Consensus 80 r~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 80 RKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred HHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 3567888877888999999999873 4455677888654
No 234
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=59.31 E-value=13 Score=25.50 Aligned_cols=39 Identities=13% Similarity=0.038 Sum_probs=26.7
Q ss_pred CCCCeEEEecCCccH--HHHHHHHHCCCC-eEEEccchHHHhh
Q 030988 121 EEINQLVDVAGGLGA--NISLLVSKYPQI-RGINFDLPHVIKD 160 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~--~~~~l~~~~P~l-~~~v~DlP~vi~~ 160 (168)
.+.-.++|+||..=. .++.+++ .|+. ++++.|+|-|+..
T Consensus 60 dgVlvl~DLGgs~~n~e~a~~~l~-~~~~~~v~g~nlPlvega 101 (125)
T TIGR02364 60 DGVLIFYDLGSAVMNAEMAVELLE-DEDRDKVHLVDAPLVEGA 101 (125)
T ss_pred CCEEEEEcCCCcHhHHHHHHHHhc-cccccEEEEechhHHHHH
Confidence 456899999554422 5667765 3444 5799999987763
No 235
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.26 E-value=9.2 Score=28.98 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=27.9
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHC--CCCeEEEccc-hHHHhhCC
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKY--PQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~--P~l~~~v~Dl-P~vi~~a~ 162 (168)
+..-.++||||+|+|-++..+.+.- |..-...+|+ |++++.++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk 125 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSK 125 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHH
Confidence 4455789999999998887776432 2222245564 77776543
No 236
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=59.20 E-value=20 Score=29.47 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=29.5
Q ss_pred HHHHHcCCCCCCCeEEEecCCcc-----HHHHHHHHHCCCCe
Q 030988 112 KILEIYKGFEEINQLVDVAGGLG-----ANISLLVSKYPQIR 148 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G-----~~~~~l~~~~P~l~ 148 (168)
..++.+|.+.++..+-.+|||+| .++..+...||+..
T Consensus 91 ~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 91 KAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred HHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 46677886788899999999998 46666788899764
No 237
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.98 E-value=13 Score=29.47 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=38.1
Q ss_pred HHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCC-CeEEEccchHHHhh
Q 030988 101 SMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQ-IRGINFDLPHVIKD 160 (168)
Q Consensus 101 ~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~-l~~~v~DlP~vi~~ 160 (168)
++...++..-+.+.+..+ ....+||=+|+ |.-+.+..-.+|. +++.=+|+|+|++.
T Consensus 73 ~~a~Rtr~fD~~~~~~~~--~g~~qvViLga--GLDTRayRl~~~~~~~vfEvD~Pevi~~ 129 (297)
T COG3315 73 FLAARTRYFDDFVRAALD--AGIRQVVILGA--GLDTRAYRLDWPKGTRVFEVDLPEVIEF 129 (297)
T ss_pred hHHHHHHHHHHHHHHHHH--hcccEEEEecc--ccccceeecCCCCCCeEEECCCcHHHHH
Confidence 455555555444444454 33789999997 5566666666775 78888999999984
No 238
>PHA01634 hypothetical protein
Probab=58.47 E-value=13 Score=25.93 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=20.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeE
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRG 149 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~ 149 (168)
++|+|||++.|.-++-++-+ +.+-
T Consensus 30 KtV~dIGA~iGdSaiYF~l~--GAK~ 53 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLR--GASF 53 (156)
T ss_pred CEEEEecCCccchhhHHhhc--CccE
Confidence 89999999999999988876 5553
No 239
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=58.45 E-value=23 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHcCCCCCCCeEEEecCCcc-----HHHHHHHHHCCCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLG-----ANISLLVSKYPQI 147 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G-----~~~~~l~~~~P~l 147 (168)
...++.+|.+..+..+.++|||+| .++..+...||+.
T Consensus 80 r~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 80 RKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred HHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 356777886778899999999988 3667788889853
No 240
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=58.07 E-value=12 Score=32.00 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCCCCeEEEecCCccHHH
Q 030988 109 VMKKILEIYKGFEEINQLVDVAGGLGANI 137 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~ 137 (168)
..-.++..++ +.+...++|||||+=-++
T Consensus 117 ~~lGv~~~~~-~~~~~lv~DIGGGStEl~ 144 (492)
T COG0248 117 IYLGVASTLP-RKGDGLVIDIGGGSTELV 144 (492)
T ss_pred HHHHHHhcCC-CCCCEEEEEecCCeEEEE
Confidence 3345677777 677789999999985443
No 241
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=57.22 E-value=9 Score=27.04 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=29.8
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+.||+|.=..-.+.++|++++.+.--|.....++...
T Consensus 61 liCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hN 97 (144)
T TIGR00689 61 LICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHN 97 (144)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhc
Confidence 6789999888889999999997777677777766554
No 242
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=57.10 E-value=10 Score=30.49 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCCCCeEEEecCCccHHHHHH--------HHHC--------CCCeEEEccchH
Q 030988 120 FEEINQLVDVAGGLGANISLL--------VSKY--------PQIRGINFDLPH 156 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l--------~~~~--------P~l~~~v~DlP~ 156 (168)
.+..-+|+|+||++|..++.+ .+++ |.++++.=|||.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~ 66 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPS 66 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TT
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC
Confidence 456689999999999755433 2232 456778888884
No 243
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=56.97 E-value=18 Score=32.24 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=25.1
Q ss_pred HHHHHHHcCCC-CCCCeEEEecCCccHHHHHHHHH
Q 030988 110 MKKILEIYKGF-EEINQLVDVAGGLGANISLLVSK 143 (168)
Q Consensus 110 ~~~~~~~~~~~-~~~~~vvDvGGg~G~~~~~l~~~ 143 (168)
+..++.... | .....++|-.||+|+++++.+..
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~ 211 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMM 211 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHH
Confidence 335555555 7 45689999999999999998764
No 244
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=56.24 E-value=14 Score=27.01 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=23.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.++||+=+|+|.++++.+.+--. +++.+|.
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~-~v~fVE~ 73 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK-SVVFVEK 73 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S-EEEEEES
T ss_pred CeEEEcCCccCccHHHHHhcCCC-eEEEEEC
Confidence 79999999999999999988432 5777776
No 245
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=55.88 E-value=9.9 Score=26.80 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=29.2
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+.||+|.=..-.+.++|++++.+.--|.....++..+
T Consensus 62 liCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hN 98 (143)
T TIGR01120 62 LICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLHN 98 (143)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhc
Confidence 6789998888888999999997776677766666543
No 246
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=55.79 E-value=75 Score=25.18 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=32.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
.+.+.+.......+|+=+|||.-.+...+.++||+.+..+.|-|.
T Consensus 263 ~i~~~~~~~~~~~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 263 TMMTWIGAPESIQNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred HHHHhcccCCcccEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcH
Confidence 344433212346678889999998988999999998876777664
No 247
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=55.74 E-value=9.7 Score=29.94 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=24.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
.++|+|+|||.|.-.+-.+...- .++..||.-
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~n 148 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGA-VSVHFQDFN 148 (282)
T ss_pred CceeEecCCcccccchhhhhhcc-ceeeeEecc
Confidence 48999999999998877666532 677777764
No 248
>PRK10742 putative methyltransferase; Provisional
Probab=55.28 E-value=37 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHHHHcCCCCCC--CeEEEecCCccHHHHHHHHHCCCCeEEEccchHHH
Q 030988 111 KKILEIYKGFEEI--NQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVI 158 (168)
Q Consensus 111 ~~~~~~~~~~~~~--~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi 158 (168)
+.++++.. ++.. .+|+|.=.|.|..+..++.+ +.+++.++.-.++
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~v 122 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV 122 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHH
Confidence 56888886 6653 49999999999999999988 7779999984443
No 249
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=55.10 E-value=10 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=29.9
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+-||+|.=..-.+.++|++++.+.--|...+.++..+
T Consensus 64 liCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hN 100 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHN 100 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhc
Confidence 5688999888889999999997777787777777554
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=54.83 E-value=21 Score=23.23 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=19.3
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEccch
Q 030988 126 LVDVAGGLGANISLLVSKYPQ-IRGINFDLP 155 (168)
Q Consensus 126 vvDvGGg~G~~~~~l~~~~P~-l~~~v~DlP 155 (168)
++|+|||.|... .+.+..+. ...+.+|..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~ 81 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLS 81 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCC
Confidence 999999999976 44443333 355556763
No 251
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=54.65 E-value=33 Score=26.37 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=26.0
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
-|+=||||..-++.++.-+.++++++++|.-
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G~~V~liEk~ 57 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFERK 57 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCCCeEEEEecC
Confidence 4566999999988888778889999999963
No 252
>COG5023 Tubulin [Cytoskeleton]
Probab=54.50 E-value=28 Score=28.67 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=33.8
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCC---eEEEccchHH
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQI---RGINFDLPHV 157 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l---~~~v~DlP~v 157 (168)
...++.+|.+.++..+=-+|||+|. ++..|+.+||+- ...|+=-|+|
T Consensus 121 rreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~ 175 (443)
T COG5023 121 RREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKV 175 (443)
T ss_pred HHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCcc
Confidence 3456777778888888899999994 667789999984 2344444443
No 253
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=53.90 E-value=21 Score=28.91 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=31.5
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe-EEEccchHH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR-GINFDLPHV 157 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~DlP~v 157 (168)
.++..|. +....++|+|||-|..++-..++ .+. .+..|..+|
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAev 151 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEV 151 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhc
Confidence 4667774 66788999999999988887776 554 477777653
No 254
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=52.90 E-value=23 Score=30.25 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHHHHHHH----HCCCCe
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANISLLVS----KYPQIR 148 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~----~~P~l~ 148 (168)
...++.+|.+.++..+.|++||.|.++..+++ .||+-.
T Consensus 142 R~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~ 183 (493)
T cd06060 142 RFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKAS 183 (493)
T ss_pred HHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcCccc
Confidence 35678898788999999999999987776555 488744
No 255
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=52.57 E-value=14 Score=22.21 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=16.1
Q ss_pred ecCCccHHHHH-HHHHCCCCeEEEccch
Q 030988 129 VAGGLGANISL-LVSKYPQIRGINFDLP 155 (168)
Q Consensus 129 vGGg~G~~~~~-l~~~~P~l~~~v~DlP 155 (168)
||+|.+-++.+ .+++. +.+++|+|.-
T Consensus 2 iGaG~sGl~aA~~L~~~-g~~v~v~E~~ 28 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKA-GYRVTVFEKN 28 (68)
T ss_dssp ES-SHHHHHHHHHHHHT-TSEEEEEESS
T ss_pred EeeCHHHHHHHHHHHHC-CCcEEEEecC
Confidence 78886654444 34443 7899999863
No 256
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=52.52 E-value=33 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=25.0
Q ss_pred HHHHHcCCCC-CCCeEEEecCCccHHHHHHHHH
Q 030988 112 KILEIYKGFE-EINQLVDVAGGLGANISLLVSK 143 (168)
Q Consensus 112 ~~~~~~~~~~-~~~~vvDvGGg~G~~~~~l~~~ 143 (168)
..++.|+ +. ....++|||.++|-|..-++++
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHc
Confidence 4566666 43 4589999999999999998887
No 257
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=52.39 E-value=3.9 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=23.5
Q ss_pred cccccCCcccceeecCCCCccccceecchhccccCCCC
Q 030988 3 QLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLLPNE 40 (168)
Q Consensus 3 r~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~~~~ 40 (168)
.+|...|+++.. . .+.|++|+.|+.++..+
T Consensus 62 ~~L~~aGli~~~----~----rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 62 SYLKKAGLIERP----K----RGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHHHCCCccCC----C----CCceEECHhHHHHHhhC
Confidence 467889999885 2 78999999999866543
No 258
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=52.32 E-value=20 Score=29.07 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=29.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.+.+..+ .+.. .++|+=||.|.+++.+++..-. ++.++. ++.++.|
T Consensus 188 ~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~~--V~gvE~~~~av~~A 234 (352)
T PF05958_consen 188 QALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAKK--VIGVEIVEEAVEDA 234 (352)
T ss_dssp HHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSSE--EEEEES-HHHHHHH
T ss_pred HHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCCe--EEEeeCCHHHHHHH
Confidence 4455555 4443 7999999999999999998654 444443 4444433
No 259
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=51.84 E-value=18 Score=30.87 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=24.8
Q ss_pred CeEEEecCC-ccH-HHHHHHHHCCCCeEEEccchH
Q 030988 124 NQLVDVAGG-LGA-NISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 124 ~~vvDvGGg-~G~-~~~~l~~~~P~l~~~v~DlP~ 156 (168)
.-||=|||| .|. .+..|++..|..+++|+|...
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 467779998 675 444566667999999999854
No 260
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=51.69 E-value=28 Score=29.13 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQI 147 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 147 (168)
..++.+|.+.++..+-.+|||+|. ++..|...||+.
T Consensus 122 ~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~ 162 (431)
T cd02188 122 READGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKK 162 (431)
T ss_pred HHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcc
Confidence 455667768889999999999983 666788899975
No 261
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=51.01 E-value=49 Score=26.57 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC----CCeEEEccch
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYP----QIRGINFDLP 155 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P----~l~~~v~DlP 155 (168)
++.+++.++ ....|||+|+|.|.-..-|+++.. ..+.+-+|.-
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS 113 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS 113 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence 346666665 334899999999986555555443 3556777763
No 262
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=49.94 E-value=51 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=30.3
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCCeE-EEccchH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQIRG-INFDLPH 156 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~~-~v~DlP~ 156 (168)
..++.++....+-.+.-+|||||. ++..+...||+... .+.=+|.
T Consensus 116 ~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 116 KEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPF 166 (216)
T ss_dssp HHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-C
T ss_pred hhhccccccccceecccccceeccccccccchhhhccccccceeecccccc
Confidence 344555646677888999999985 66678888898764 3333454
No 263
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=49.43 E-value=58 Score=27.08 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=58.1
Q ss_pred ccccCCcchHHHhcCCchhHhhcCCCchhHHhH-hcHHHHH---HHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCC
Q 030988 57 NVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAM-KAARRRN---LFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGG 132 (168)
Q Consensus 57 ~~~~~~~L~~~l~~g~~~~~~~~g~~~~~e~~~-~~p~~~~---~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg 132 (168)
.+.....|++.+|....||-.-+..-..-|.+. +||.+.+ .|.+.......+.....++.|.+|=++..|||..=-
T Consensus 67 HyeiL~~LT~tvrPeDDPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~RrygGFYGpTcVvDFAli 146 (499)
T PF09959_consen 67 HYEILKSLTDTVRPEDDPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYGGFYGPTCVVDFALI 146 (499)
T ss_pred HHHHHHHHhcccCCCCCchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhcCccCCceeeeeeec
Confidence 355678889999988888765543234667665 5776664 555555555556666788889888889999998876
Q ss_pred ccHHHHHH
Q 030988 133 LGANISLL 140 (168)
Q Consensus 133 ~G~~~~~l 140 (168)
+|..+--+
T Consensus 147 PGSTsNVV 154 (499)
T PF09959_consen 147 PGSTSNVV 154 (499)
T ss_pred CCchHHHH
Confidence 77655443
No 264
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=49.21 E-value=39 Score=29.86 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=39.1
Q ss_pred HhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCe-EEEccchH
Q 030988 104 NHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIR-GINFDLPH 156 (168)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~-~~v~DlP~ 156 (168)
+.+++..-.+-+.|.-+.....++|+++.+|.++.-.++.-|--+ ++.+||-+
T Consensus 26 sRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 26 SRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 334444445666776346778999999999999999999999544 47788743
No 265
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=48.31 E-value=21 Score=27.30 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=37.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHHh
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVIK 159 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~ 159 (168)
.+++.+. --...+++|.-=|.|.....+++.+|+++...+|+-++..
T Consensus 34 evl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~ 80 (303)
T KOG2782|consen 34 EVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVAR 80 (303)
T ss_pred hHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHH
Confidence 4455554 3345899999999999999999999999999999966543
No 266
>PLN00220 tubulin beta chain; Provisional
Probab=47.00 E-value=38 Score=28.43 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=28.7
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQI 147 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 147 (168)
..++.+|.+.++..+-.+|||+|. ++..|...||+.
T Consensus 122 ~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~ 162 (447)
T PLN00220 122 KEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (447)
T ss_pred HHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcccc
Confidence 456778878899999999999974 445678889976
No 267
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=46.86 E-value=28 Score=28.32 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=23.9
Q ss_pred CCCeEEEecCCccHHHH--HHHHHCCCCeEEEcc
Q 030988 122 EINQLVDVAGGLGANIS--LLVSKYPQIRGINFD 153 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~--~l~~~~P~l~~~v~D 153 (168)
..-.||-||||+|.++. .+.++.|.=++.|+|
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve 71 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE 71 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence 44678889999997554 488888887766655
No 268
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=46.83 E-value=17 Score=26.41 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=29.2
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+.||+|.=..-.+.++|++++.+.--|.....++..+
T Consensus 63 liCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~hN 99 (171)
T PRK12615 63 CICGTGVGINNAVNKVPGIRSALVRDMTTALYAKEEL 99 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhc
Confidence 6789998777888999999986666677777776554
No 269
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=46.73 E-value=16 Score=30.83 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=24.8
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFD 153 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 153 (168)
.+...++|||.|+|.++...+++-.+- ++.++
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD~-vtA~E 96 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGADS-VTACE 96 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCCe-EEeeh
Confidence 356899999999999999999887443 44444
No 270
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=46.23 E-value=4 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=21.3
Q ss_pred ccccccCCcccceeecCCCCccccceecchhccccC
Q 030988 2 LQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLL 37 (168)
Q Consensus 2 Lr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~ 37 (168)
|+.|...|+++.. ++.|.+|+.|..++
T Consensus 40 L~~L~~~gLI~~~---------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 40 LKELEEKGLIKKK---------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHHHTTSEEEE---------TTEEEE-HHHHHHH
T ss_pred HHHHHHCcCeeCC---------CCEEEECccHHHHH
Confidence 5678889999763 79999999998765
No 271
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=46.12 E-value=56 Score=28.41 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=35.2
Q ss_pred CchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCC--CCCeEEEecCCccHHHHHHHHH
Q 030988 82 KNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFE--EINQLVDVAGGLGANISLLVSK 143 (168)
Q Consensus 82 ~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~vvDvGGg~G~~~~~l~~~ 143 (168)
..-||.+++||-.=..|+++. ...+.+..++-+ ....|.-+|||+|-+..+.+++
T Consensus 332 ~~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lka 388 (649)
T KOG0822|consen 332 NQTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKA 388 (649)
T ss_pred hhhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHH
Confidence 345677778886555566653 224555544222 2567778999999888777665
No 272
>PTZ00387 epsilon tubulin; Provisional
Probab=45.64 E-value=39 Score=28.61 Aligned_cols=37 Identities=16% Similarity=0.495 Sum_probs=29.2
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQI 147 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 147 (168)
...++.+|.+.++..+-.+|||+|. ++..+...||..
T Consensus 122 r~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~ 163 (465)
T PTZ00387 122 RRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHV 163 (465)
T ss_pred HHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccC
Confidence 3567778867888999999999983 566688888875
No 273
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=44.84 E-value=29 Score=24.67 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCCeEEEecCCccH--------------HHHHHHHHCCCCeEEEccc
Q 030988 122 EINQLVDVAGGLGA--------------NISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 122 ~~~~vvDvGGg~G~--------------~~~~l~~~~P~l~~~v~Dl 154 (168)
....+||+||+.=. -.+......|+.+++++|.
T Consensus 35 ~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd~ 81 (153)
T PF00549_consen 35 GPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVDI 81 (153)
T ss_dssp TEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEEE
T ss_pred CceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEEe
Confidence 45899999998762 3455666789999999884
No 274
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=44.69 E-value=76 Score=26.42 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCC
Q 030988 109 VMKKILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYP 145 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P 145 (168)
....+.+.|+ -....=|+-+||+.|. ++....+..|
T Consensus 81 a~~~v~~l~~-~g~i~Gvi~~GGs~GT~lat~aMr~LP 117 (403)
T PF06792_consen 81 AARFVSDLYD-EGKIDGVIGIGGSGGTALATAAMRALP 117 (403)
T ss_pred HHHHHHHHHh-cCCccEEEEecCCccHHHHHHHHHhCC
Confidence 3334556666 5667889999999996 5555777666
No 275
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=44.60 E-value=7.2 Score=24.84 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=21.8
Q ss_pred ccccccCCcccceeecCCCCccccceecchhccccC
Q 030988 2 LQLLASCSFLTCNLVTNKDGNVFRVYGLASVGRYLL 37 (168)
Q Consensus 2 Lr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~~l~ 37 (168)
|+.|...|++++....+ .-.--.|++|+.|+.|.
T Consensus 40 L~~L~~~GLv~r~~~~~--~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 40 LKELEEAGLVERRVYPE--VPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHHTTSEEEEEESS--SSSEEEEEE-HHHHHHH
T ss_pred HHHHHHcchhhcccccC--CCCCCccCCCcCHHHHH
Confidence 56788999999863211 00013599999998876
No 276
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=44.56 E-value=26 Score=29.85 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=14.7
Q ss_pred HHHHcCCCCCCCeEEEecCCccHH
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGAN 136 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~ 136 (168)
+...++ ......|+|||||+=.+
T Consensus 124 v~~~l~-~~~~~lviDIGGGStEl 146 (496)
T PRK11031 124 VAHTTG-GADQRLVVDIGGASTEL 146 (496)
T ss_pred hhhccC-CCCCEEEEEecCCeeeE
Confidence 444445 43446899999997443
No 277
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=43.87 E-value=19 Score=26.20 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=29.0
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+-||+|.=..-.+.++|++++.+.--|.....++..+
T Consensus 63 liCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~hN 99 (171)
T TIGR01119 63 CICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEEL 99 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhc
Confidence 5688998778888999999986666677777776554
No 278
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=43.55 E-value=35 Score=28.44 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=28.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCCe
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQIR 148 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 148 (168)
..++.+|.+.++..+-.+|||+|. ++..+...||+..
T Consensus 121 ~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 162 (425)
T cd02187 121 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRI 162 (425)
T ss_pred HhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcc
Confidence 456777767888999999999983 4556888899864
No 279
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=43.54 E-value=23 Score=25.23 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=29.9
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+.||+|.=..-.+.++|.+++.+.=-|.....++...
T Consensus 64 liCGTGiG~~iaANKv~GiraAl~~D~~sA~~ar~hN 100 (151)
T COG0698 64 LICGTGIGMSIAANKVPGIRAALVSDPTSAKLAREHN 100 (151)
T ss_pred EEecCChhHHHHhhccCCeEEEEecCHHHHHHHHhcC
Confidence 7789998888888999999997777777777776654
No 280
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=43.45 E-value=45 Score=28.02 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=29.6
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCCe
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQIR 148 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 148 (168)
..++.+|.+..+..+-.+|||+|. ++..+...||...
T Consensus 118 ~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~ 159 (446)
T cd02189 118 KEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESL 159 (446)
T ss_pred HHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccc
Confidence 457788878889999999999983 6666888899753
No 281
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=43.44 E-value=57 Score=24.53 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.7
Q ss_pred CCCCCeEEEecCCccHHHHHHHHH
Q 030988 120 FEEINQLVDVAGGLGANISLLVSK 143 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~ 143 (168)
+-..++|+|.|.|+|..+++.+++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~a 100 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARA 100 (218)
T ss_pred ccccceeeecccccChHHHHHHHh
Confidence 445699999999999999988876
No 282
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=42.85 E-value=32 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
....|+=||||.+-++.+++-+..+++++|+|.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 346788899999998888887778999999997
No 283
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=42.85 E-value=21 Score=25.44 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=29.0
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+-||+|.=..-.+.++|++++.+.--|.....++...
T Consensus 67 liCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar~hN 103 (151)
T PTZ00215 67 LVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQHN 103 (151)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhc
Confidence 5688998888889999999997776676666666543
No 284
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=42.71 E-value=20 Score=26.05 Aligned_cols=37 Identities=27% Similarity=0.128 Sum_probs=28.8
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+-||+|.=..-.+.++|++++.+.--|.....++..+
T Consensus 63 liCGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~hN 99 (171)
T PRK08622 63 CICGTGVGISNAVNKVPGIRSALVRDMTSALYAKEEL 99 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhc
Confidence 5688998888889999999986666677777766554
No 285
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=42.62 E-value=51 Score=29.32 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeE---EEccc
Q 030988 109 VMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRG---INFDL 154 (168)
Q Consensus 109 ~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~---~v~Dl 154 (168)
....++..+. ..- .-.+-+|=|+|.++..+++.||..++ .++++
T Consensus 311 KlRsIL~~~~-i~~-~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~ 357 (675)
T PF14314_consen 311 KLRSILKNLN-IKY-RDALCGGDGSGGITACLLRMNPTSRGIFNSLLEL 357 (675)
T ss_pred hHHHHHHhcC-CCc-ceeEEEecCchHHHHHHHHhCcccceeeeccccc
Confidence 3457788776 433 44566899999999999999999997 45554
No 286
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=41.63 E-value=36 Score=26.40 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.7
Q ss_pred CCCCeEEEecCCc
Q 030988 121 EEINQLVDVAGGL 133 (168)
Q Consensus 121 ~~~~~vvDvGGg~ 133 (168)
.....++|||||+
T Consensus 111 ~~~~lviDIGGGS 123 (285)
T PF02541_consen 111 DKNGLVIDIGGGS 123 (285)
T ss_dssp TSSEEEEEEESSE
T ss_pred cCCEEEEEECCCc
Confidence 4557999999996
No 287
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.49 E-value=1.2e+02 Score=24.57 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=56.9
Q ss_pred ccccCCcchHHHhcCCchhHhhcCCCchhHHhH-hcHHHHHH---HHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCC
Q 030988 57 NVDPWYHLKDCLLEGTLPFMKAHNAKNPFEYAM-KAARRRNL---FNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGG 132 (168)
Q Consensus 57 ~~~~~~~L~~~l~~g~~~~~~~~g~~~~~e~~~-~~p~~~~~---f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg 132 (168)
.|+....|.+.+|....||-.-+..-...|.+. ++|++.+. |.+......++.....++.|.+|-++..|||..==
T Consensus 68 hyeil~sltdtvrpeddpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~irryggfygptcvvdfal~ 147 (500)
T COG4883 68 HYEILTSLTDTVRPEDDPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGFYGPTCVVDFALV 147 (500)
T ss_pred HHHHHHhhhcccCCCCCchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCccCCceEEEEEec
Confidence 455677888999988888765553235667665 57777664 44444444445556778888778888999997644
Q ss_pred cc---HHHHHHHHH
Q 030988 133 LG---ANISLLVSK 143 (168)
Q Consensus 133 ~G---~~~~~l~~~ 143 (168)
+| ...-.+++.
T Consensus 148 pgstsnvvnrilk~ 161 (500)
T COG4883 148 PGSTSNVVNRILKK 161 (500)
T ss_pred CCchHHHHHHHHHh
Confidence 44 444445553
No 288
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=41.35 E-value=38 Score=28.22 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHcCCCCCCCeEEEecCCccH-H-HHHHHHHCCCCeEEEccc
Q 030988 114 LEIYKGFEEINQLVDVAGGLGA-N-ISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 114 ~~~~~~~~~~~~vvDvGGg~G~-~-~~~l~~~~P~l~~~v~Dl 154 (168)
...|..-+..++|+=||+|+-. | +..+++++|++++.+++-
T Consensus 11 ~r~~s~qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek 53 (468)
T KOG1800|consen 11 CRHFSTQSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEK 53 (468)
T ss_pred HHHhhhccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeec
Confidence 3344323455699999999864 3 455888899999998884
No 289
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=41.29 E-value=45 Score=27.92 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCCe
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQIR 148 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 148 (168)
..++.+|.+.++..+-.+|||+|. ++..+...||...
T Consensus 123 ~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~ 164 (434)
T cd02186 123 KLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKS 164 (434)
T ss_pred HHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccc
Confidence 455667767888999999999974 5666888999653
No 290
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=40.23 E-value=16 Score=27.69 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=9.3
Q ss_pred CeEEEecCCcc
Q 030988 124 NQLVDVAGGLG 134 (168)
Q Consensus 124 ~~vvDvGGg~G 134 (168)
.-|||||||+=
T Consensus 142 g~VVDiGGGTT 152 (277)
T COG4820 142 GGVVDIGGGTT 152 (277)
T ss_pred CcEEEeCCCcc
Confidence 68999999874
No 291
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=39.90 E-value=20 Score=24.03 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=17.0
Q ss_pred hHhcHHHHHHHHHHHHHhhHH
Q 030988 88 AMKAARRRNLFNQSMHNHAAL 108 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~ 108 (168)
..++++.+++|+|.|..++..
T Consensus 89 ~m~s~~~WdRFMRFMeRYA~~ 109 (113)
T PRK13610 89 NWNSEEAFERFMRFASRYANS 109 (113)
T ss_pred EECCHHHHHHHHHHHHHHHHH
Confidence 456788899999999988653
No 292
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=39.69 E-value=66 Score=25.31 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=33.0
Q ss_pred cC-CCchhHHhHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccH
Q 030988 79 HN-AKNPFEYAMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGA 135 (168)
Q Consensus 79 ~g-~~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~ 135 (168)
.| +.+.++|+.+.|+..+-+.+...- ...|+..|..-......|-|||--|+
T Consensus 202 tG~d~~V~dYv~~~~e~~ef~~~l~~~-----l~~~LP~y~~egks~lTIaIGCTGGq 254 (286)
T COG1660 202 TGLDKPVADYVMSQPEVEEFYEKLRDL-----LEFWLPRYEKEGKSYLTIAIGCTGGQ 254 (286)
T ss_pred CCCChhHHHHHHcChHHHHHHHHHHHH-----HHHHhHHHHhcCCeEEEEEEccCCCc
Confidence 36 679999999999966544444322 34566767512233566779985553
No 293
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=39.59 E-value=70 Score=24.25 Aligned_cols=12 Identities=33% Similarity=0.944 Sum_probs=9.2
Q ss_pred CeEEEecCCccH
Q 030988 124 NQLVDVAGGLGA 135 (168)
Q Consensus 124 ~~vvDvGGg~G~ 135 (168)
..++|||||-|.
T Consensus 197 l~~idiGGG~~~ 208 (251)
T PF02784_consen 197 LEFIDIGGGFGV 208 (251)
T ss_dssp -SEEEEESSB-S
T ss_pred ccEEEeeCCCCC
Confidence 689999999985
No 294
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=39.43 E-value=67 Score=24.52 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=20.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
.-..|+.||||+|..-. +..--|..++|.+|=-
T Consensus 76 ~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn 108 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPN 108 (252)
T ss_pred CccceEEecccCCCCcc-cccCCCCceEEEeCCc
Confidence 34678999999997532 1222245567888853
No 295
>PLN00222 tubulin gamma chain; Provisional
Probab=38.81 E-value=56 Score=27.60 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCCe
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQIR 148 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 148 (168)
..++.+|.+.++..+-.+|||+|. ++..|...||...
T Consensus 124 ~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~ 165 (454)
T PLN00222 124 READGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKL 165 (454)
T ss_pred HHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCcc
Confidence 455677767888899999999983 6667888899753
No 296
>PRK10854 exopolyphosphatase; Provisional
Probab=38.81 E-value=31 Score=29.49 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=13.5
Q ss_pred HHHHcCCCCCCCeEEEecCCcc
Q 030988 113 ILEIYKGFEEINQLVDVAGGLG 134 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G 134 (168)
+...++ ......|+|||||+=
T Consensus 129 v~~~l~-~~~~~lvvDIGGGSt 149 (513)
T PRK10854 129 VEHTQP-EKGRKLVIDIGGGST 149 (513)
T ss_pred hhcccC-CCCCeEEEEeCCCeE
Confidence 333344 334468999999974
No 297
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=38.71 E-value=1.3e+02 Score=24.08 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccH----HHHHHHHHCCCCeEEEccch
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGA----NISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~----~~~~l~~~~P~l~~~v~DlP 155 (168)
++.+.+..+ .....+ -.|.|+|- .+.-|.+++|+++++..|=.
T Consensus 159 ~~EI~~~~~--g~~d~f-VagvGTGGTitGvar~Lk~~~p~i~iv~vdP~ 205 (300)
T COG0031 159 GPEIWQQTD--GKVDAF-VAGVGTGGTITGVARYLKERNPNVRIVAVDPE 205 (300)
T ss_pred HHHHHHHhC--CCCCEE-EEeCCcchhHHHHHHHHHhhCCCcEEEEECCC
Confidence 445665555 223333 37777874 66778999999999988854
No 298
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=38.03 E-value=53 Score=25.45 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCcc
Q 030988 95 RNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLG 134 (168)
Q Consensus 95 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G 134 (168)
.+.|.+++.....-.+...+..+ ...-..++|||+++.
T Consensus 12 ~~~~~~~~~~~d~~~i~~~A~~~--~~~GAdiIDVg~~~~ 49 (261)
T PRK07535 12 RKSIAEAIEAKDAAFIQKLALKQ--AEAGADYLDVNAGTA 49 (261)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHH--HHCCCCEEEECCCCC
Confidence 45666666554433332333333 345579999999876
No 299
>PLN00221 tubulin alpha chain; Provisional
Probab=37.74 E-value=55 Score=27.58 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=29.2
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCC
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQI 147 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 147 (168)
...++.+|.+.++..+-.+|||+|. +...+...||..
T Consensus 123 r~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~ 164 (450)
T PLN00221 123 RKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKK 164 (450)
T ss_pred HHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccc
Confidence 3567888878899999999999984 455578888865
No 300
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=37.04 E-value=81 Score=24.24 Aligned_cols=32 Identities=6% Similarity=0.005 Sum_probs=24.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
-|+=||||..-++.+..-+..+++++++|.-.
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~ 54 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL 54 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46669999887777766666689999998743
No 301
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=37.02 E-value=23 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.8
Q ss_pred hHhcHHHHHHHHHHHHHhhHH
Q 030988 88 AMKAARRRNLFNQSMHNHAAL 108 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~ 108 (168)
..++++.+++|+|.|..++.-
T Consensus 83 ~m~s~~~WdRFMRFMeRYA~~ 103 (111)
T PLN00039 83 VMRSPREWDRFMRFMERYAEE 103 (111)
T ss_pred EECCHHHHHHHHHHHHHHHHh
Confidence 446788899999999988653
No 302
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=36.92 E-value=37 Score=28.93 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=26.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988 123 INQLVDVAGGLGANISLLVSKYPQIRGINFD 153 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 153 (168)
...|+=||||++-++.++.-+..+++++++|
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 3567779999999888888888899998885
No 303
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=36.86 E-value=97 Score=25.63 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=28.7
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH----HHHHHHHHCCCCeEEEcc
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA----NISLLVSKYPQIRGINFD 153 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~----~~~~l~~~~P~l~~~v~D 153 (168)
.++..+- ..+..++|||||.-. -+..+.-..|+++++.+.
T Consensus 273 Dii~~~G--g~PANFLDvGGgA~~e~v~~a~~~il~d~~vk~IfVN 316 (387)
T COG0045 273 DIVKLYG--GKPANFLDVGGGATAERVKEAFKLILSDPNVKAIFVN 316 (387)
T ss_pred HHHHHcC--CCCcceeecCCCCCHHHHHHHHHHHhcCCCccEEEEE
Confidence 3444443 456899999999874 455577789999987665
No 304
>PTZ00335 tubulin alpha chain; Provisional
Probab=36.85 E-value=58 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=28.9
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCCe
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQIR 148 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l~ 148 (168)
..++.+|.+.++..+-.+|||+|. ++..+...||...
T Consensus 124 ~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~ 165 (448)
T PTZ00335 124 KLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKS 165 (448)
T ss_pred HhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccc
Confidence 456777767888999999999984 5566888898754
No 305
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=36.80 E-value=44 Score=27.11 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=26.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
..|+=||||.+-++.++.-+.-+++++|+|.-
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 50 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQ 50 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecC
Confidence 45777999999888887777778999999974
No 306
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=36.54 E-value=7.3 Score=32.91 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCCCCCC
Q 030988 91 AARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAPSYQG 166 (168)
Q Consensus 91 ~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~~~~ 166 (168)
.|+..-.+++.|.+.-++.........+ -.....| ||=|.|.+..-+....|.-+.+...+ |++++.++-+.|
T Consensus 267 ~~~l~s~~h~~m~~g~aL~~n~~~~~~~-~~~~~lv--vg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~ 340 (482)
T KOG2352|consen 267 KPELASQYHQMMIGGLALIMNRPPQKLD-TGGKQLV--VGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFG 340 (482)
T ss_pred CcccCcchhhhhhccceeccccCchhcc-ccCcEEE--EecCCCccccceeeecCccceeEEEEChhHhhccHhhhc
Confidence 4455556777776654433222223333 2233344 55555999999999999888766555 889988876543
No 307
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=36.53 E-value=73 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 120 FEEINQLVDVAGGL-GANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 120 ~~~~~~vvDvGGg~-G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
.....+|+.+|+|. |..++.++++..--+++..|. ++..+.++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 44557889998887 889999999986545666654 555555443
No 308
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.38 E-value=51 Score=23.70 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.++.... -....++||+|.|.|.+-.+.++.- -.+.+.++|
T Consensus 63 nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvEL 103 (199)
T KOG4058|consen 63 NVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVEL 103 (199)
T ss_pred HHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceec
Confidence 4455554 2334799999999998877777653 234555555
No 309
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=36.17 E-value=25 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=16.7
Q ss_pred hHhcHHHHHHHHHHHHHhhHH
Q 030988 88 AMKAARRRNLFNQSMHNHAAL 108 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~ 108 (168)
..++++.+++|+|.|..++..
T Consensus 82 ~m~s~~~WdRFMRFmeRYA~~ 102 (109)
T TIGR03047 82 IMKSEDEWDRFMRFMERYAEA 102 (109)
T ss_pred EECCHHHHHHHHHHHHHHHHh
Confidence 346788899999999988653
No 310
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=35.71 E-value=22 Score=26.96 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=23.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhCC
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~ 162 (168)
...+.||.|+|.|..+..++..+ -=++-+.|. +.-++.|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~ 95 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAK 95 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHH
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHH
Confidence 46899999999999999887644 223444443 44444433
No 311
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=35.45 E-value=1.6e+02 Score=22.21 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=24.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.++-|+|.|+|.++.-.+++ .-+++.+++ |.....+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a 70 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLA 70 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHh
Confidence 37889999999988766655 446666666 4444433
No 312
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=35.32 E-value=21 Score=27.17 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=19.5
Q ss_pred CCC-CCeEEEecCCccHHHHHHHHHCC
Q 030988 120 FEE-INQLVDVAGGLGANISLLVSKYP 145 (168)
Q Consensus 120 ~~~-~~~vvDvGGg~G~~~~~l~~~~P 145 (168)
|.+ ..+++|+|.|.|.+...+...+.
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~fe 135 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFE 135 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHH
Confidence 654 58999999999987766554443
No 313
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=35.11 E-value=94 Score=25.69 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=21.2
Q ss_pred HHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCCCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYPQI 147 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l 147 (168)
+-..+. -.....+|=+||+.|. ++.-+..+||++
T Consensus 103 ~~~~~~-~~~~~pwI~~GgSY~G~Laaw~r~kyP~~ 137 (434)
T PF05577_consen 103 VKKKYN-TAPNSPWIVFGGSYGGALAAWFRLKYPHL 137 (434)
T ss_dssp HHHHTT-TGCC--EEEEEETHHHHHHHHHHHH-TTT
T ss_pred HHHhhc-CCCCCCEEEECCcchhHHHHHHHhhCCCe
Confidence 334454 3344577779999886 555588899997
No 314
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=35.01 E-value=26 Score=23.58 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=16.8
Q ss_pred hHhcHHHHHHHHHHHHHhhHH
Q 030988 88 AMKAARRRNLFNQSMHNHAAL 108 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~ 108 (168)
..++++.+++|+|.|..++.-
T Consensus 85 ~m~s~~~WdRFMRFMeRYA~~ 105 (113)
T CHL00128 85 IMKNPEAWDRFMRFMERYAED 105 (113)
T ss_pred EECCHHHHHHHHHHHHHHHHh
Confidence 446788899999999988653
No 315
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=34.99 E-value=27 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.8
Q ss_pred hHhcHHHHHHHHHHHHHhhHH
Q 030988 88 AMKAARRRNLFNQSMHNHAAL 108 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~ 108 (168)
..++++.+++|+|.|..++..
T Consensus 85 ~m~s~~~WdRFMRFMeRYA~~ 105 (113)
T PRK13612 85 IWKSEQEWDRFMRFMERYAKE 105 (113)
T ss_pred EECCHHHHHHHHHHHHHHHHh
Confidence 346788899999999988653
No 316
>PLN02546 glutathione reductase
Probab=34.67 E-value=45 Score=28.88 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=25.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
-|+=||||+|-+..++..+--..+++++|.|
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 111 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCELP 111 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3666999999888877777679999999964
No 317
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=34.60 E-value=60 Score=25.01 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.1
Q ss_pred CCCCeEEEecCCccH
Q 030988 121 EEINQLVDVAGGLGA 135 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~ 135 (168)
+.-..++|||+++|.
T Consensus 37 ~~GAdiIDIG~~~~~ 51 (252)
T cd00740 37 EGGAQILDLNVDYGG 51 (252)
T ss_pred HCCCCEEEECCCCCC
Confidence 445799999999874
No 318
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=34.25 E-value=22 Score=23.82 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=15.9
Q ss_pred hHhcHHHHHHHHHHHHHhhHH
Q 030988 88 AMKAARRRNLFNQSMHNHAAL 108 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~ 108 (168)
..++++.+++|+|.|..++.-
T Consensus 82 ~m~s~~~WdRFMRFMeRYA~~ 102 (108)
T PF03912_consen 82 IMKSEEEWDRFMRFMERYAEA 102 (108)
T ss_dssp EE-SSHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHh
Confidence 346677899999999988653
No 319
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=33.69 E-value=52 Score=25.96 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=27.9
Q ss_pred CCeEEEecCCccH----HHHHHHHHCC----CCeEEEccc-hHHHhhCC
Q 030988 123 INQLVDVAGGLGA----NISLLVSKYP----QIRGINFDL-PHVIKDAP 162 (168)
Q Consensus 123 ~~~vvDvGGg~G~----~~~~l~~~~P----~l~~~v~Dl-P~vi~~a~ 162 (168)
.-+|...||++|. +++.+.+..+ +++++.-|. +.+++.|+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 4699999999995 4444555433 356788887 66777765
No 320
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=33.34 E-value=29 Score=27.48 Aligned_cols=31 Identities=26% Similarity=0.157 Sum_probs=23.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
.-..++|+|||.|-+.. -+|.+..+-+|+-.
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~ 75 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCT 75 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhh
Confidence 35789999999997653 34877788888743
No 321
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=33.32 E-value=54 Score=27.43 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=25.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.-||-||||+|-+..++..+--.++.+..|-
T Consensus 40 ~DvvvIG~GpGGyvAAikAaQlGlkTacvEk 70 (506)
T KOG1335|consen 40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEK 70 (506)
T ss_pred CCEEEECCCCchHHHHHHHHHhcceeEEEec
Confidence 3467799999999999999888888766664
No 322
>PRK02399 hypothetical protein; Provisional
Probab=33.28 E-value=1.5e+02 Score=24.76 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=22.5
Q ss_pred HHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCC
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYP 145 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P 145 (168)
+.+.|. -....-|+-+||+.|. ++....+..|
T Consensus 87 v~~L~~-~g~i~gviglGGs~GT~lat~aMr~LP 119 (406)
T PRK02399 87 VRELYE-RGDVAGVIGLGGSGGTALATPAMRALP 119 (406)
T ss_pred HHHHHh-cCCccEEEEecCcchHHHHHHHHHhCC
Confidence 334565 4567889999999996 5555666655
No 323
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=33.12 E-value=87 Score=26.40 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=22.6
Q ss_pred CCCCeEEEecCCccHHHHH-HHHHCCCCe
Q 030988 121 EEINQLVDVAGGLGANISL-LVSKYPQIR 148 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~-l~~~~P~l~ 148 (168)
.+..-|+-+||+.|.++.+ +..+||++-
T Consensus 164 a~~~pvIafGGSYGGMLaAWfRlKYPHiv 192 (492)
T KOG2183|consen 164 AEASPVIAFGGSYGGMLAAWFRLKYPHIV 192 (492)
T ss_pred cccCcEEEecCchhhHHHHHHHhcChhhh
Confidence 4567788899999987766 788999963
No 324
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=33.03 E-value=1.5e+02 Score=20.34 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=30.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCC-CCeEEEccchHH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYP-QIRGINFDLPHV 157 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P-~l~~~v~DlP~v 157 (168)
..++.++. .+.-.++|+ ||+-........... +-++.+.|-|=|
T Consensus 50 ~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~~~v~~~daPlV 94 (124)
T PRK14484 50 EAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGEKKIIIIDAPIV 94 (124)
T ss_pred HHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCCCcEEEECCcHH
Confidence 34455564 677899999 667665555555554 477899999854
No 325
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=32.92 E-value=60 Score=26.15 Aligned_cols=39 Identities=23% Similarity=0.132 Sum_probs=33.8
Q ss_pred eEEEecCCc-cHHHHHHHHHCCCCeEEEccc-hHHHhhCCC
Q 030988 125 QLVDVAGGL-GANISLLVSKYPQIRGINFDL-PHVIKDAPS 163 (168)
Q Consensus 125 ~vvDvGGg~-G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a~~ 163 (168)
+++=+|+|+ |.++..+++.+.--++++.|+ |.-++.|+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 788899885 888899999999999999998 888888765
No 326
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=32.82 E-value=27 Score=24.52 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=26.8
Q ss_pred cCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 130 AGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 130 GGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
=||+|.=..-.+.++|++++.+.--|...+.++...
T Consensus 62 iCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hN 97 (141)
T TIGR01118 62 IDAYGAGSFMVATKIKGMIAAEVSDERSAYMTRGHN 97 (141)
T ss_pred EcCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHHHc
Confidence 367888777788999999987776666666666543
No 327
>PLN02661 Putative thiazole synthesis
Probab=32.79 E-value=73 Score=26.08 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=23.9
Q ss_pred CeEEEecCCccHHHHHHHH-HCCCCeEEEccch
Q 030988 124 NQLVDVAGGLGANISLLVS-KYPQIRGINFDLP 155 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~-~~P~l~~~v~DlP 155 (168)
..|+-||||...+..+..- +.|+++++++|.-
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~ 125 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS 125 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 4677799988876666444 4689999999963
No 328
>PLN02463 lycopene beta cyclase
Probab=32.64 E-value=52 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=24.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
-.|+=||||....+++..-+..+++++++|.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~ 59 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDP 59 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEecc
Confidence 3567799999988877666667999999996
No 329
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=32.30 E-value=49 Score=21.08 Aligned_cols=6 Identities=67% Similarity=1.331 Sum_probs=3.1
Q ss_pred ecCCcc
Q 030988 129 VAGGLG 134 (168)
Q Consensus 129 vGGg~G 134 (168)
||||+|
T Consensus 2 IagGtG 7 (109)
T PF00175_consen 2 IAGGTG 7 (109)
T ss_dssp EEEGGG
T ss_pred eeccee
Confidence 445555
No 330
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=31.83 E-value=50 Score=26.11 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=26.8
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCCCCeEEEccc
Q 030988 122 EINQLVDVAGGLGA----NISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 122 ~~~~vvDvGGg~G~----~~~~l~~~~P~l~~~v~Dl 154 (168)
.+..++|||||--. -+..++.+-|.+++++...
T Consensus 308 ePANFLDvGGgV~EdqV~~Af~ilTaDPkVk~iLvNi 344 (412)
T KOG1447|consen 308 EPANFLDVGGGVKEDQVYQAFKILTADPKVKAILVNI 344 (412)
T ss_pred CCcceeeccCcccHHHHHHHhhhhccCCceeEEEEeh
Confidence 36899999999774 4567889999999988764
No 331
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=31.82 E-value=52 Score=20.65 Aligned_cols=37 Identities=14% Similarity=0.334 Sum_probs=19.7
Q ss_pred CCCCCeEEEecCCccH-HHHHHHHHC-CCCe--EEEccchH
Q 030988 120 FEEINQLVDVAGGLGA-NISLLVSKY-PQIR--GINFDLPH 156 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~-~~~~l~~~~-P~l~--~~v~DlP~ 156 (168)
.+..+++|-||+++|. ++..+..+| -+.. ++-||.|.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk~~ 76 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEKPP 76 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-----
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeeccCC
Confidence 6677899999999995 665677665 2233 47777664
No 332
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=31.48 E-value=64 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=14.3
Q ss_pred HHHcCCCCCCCeEEEecCCccHHH
Q 030988 114 LEIYKGFEEINQLVDVAGGLGANI 137 (168)
Q Consensus 114 ~~~~~~~~~~~~vvDvGGg~G~~~ 137 (168)
...++ +.. ..++|||||+=.++
T Consensus 119 ~~~~~-~~~-~~v~DiGGGSte~~ 140 (300)
T TIGR03706 119 AHTLP-IAD-GLVVDIGGGSTELI 140 (300)
T ss_pred HhCCC-CCC-cEEEEecCCeEEEE
Confidence 33344 443 59999999975443
No 333
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=31.30 E-value=34 Score=22.71 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.5
Q ss_pred hHhcHHHHHHHHHHHHHhhHH
Q 030988 88 AMKAARRRNLFNQSMHNHAAL 108 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~ 108 (168)
..++++.+++|+|.|..++..
T Consensus 78 ~m~s~~~wdRFMRFmeRYA~~ 98 (104)
T PRK13611 78 DMETEAEWDRFLRFMERFSAA 98 (104)
T ss_pred EECCHHHHHHHHHHHHHHHHh
Confidence 346788899999999988653
No 334
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=30.82 E-value=71 Score=26.75 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=25.3
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCCCCeEEEcc
Q 030988 122 EINQLVDVAGGLGA----NISLLVSKYPQIRGINFD 153 (168)
Q Consensus 122 ~~~~vvDvGGg~G~----~~~~l~~~~P~l~~~v~D 153 (168)
.+..++|||||.-. -+..++...|+++++++.
T Consensus 317 ~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliN 352 (422)
T PLN00124 317 SPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVN 352 (422)
T ss_pred CcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 46899999999874 455677788999987763
No 335
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=30.64 E-value=40 Score=27.36 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=29.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccch-HHHhhCCCC
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDLP-HVIKDAPSY 164 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP-~vi~~a~~~ 164 (168)
.-|+-+| |-|++++.++++.= .+++.+|.. +..+.|+++
T Consensus 170 V~I~G~G-GlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 170 VAVVGAG-GLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred EEEECCc-HHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence 4555566 78899999999765 999999984 566666654
No 336
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=30.22 E-value=1.9e+02 Score=24.12 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=28.2
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHH-CCCCeEEEccc
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSK-YPQIRGINFDL 154 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~-~P~l~~~v~Dl 154 (168)
.+...++.......++=+||++|.++..||.+ -|.+--.|+|-
T Consensus 172 ~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDn 215 (403)
T PF11144_consen 172 DLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDN 215 (403)
T ss_pred HHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEec
Confidence 45555664444234555899999988876655 56666677774
No 337
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=30.03 E-value=58 Score=28.94 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=25.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
-|+=||||+|-+..++..+--+++++++|.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~ 147 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTG 147 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 466699999999888887777999999983
No 338
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=29.71 E-value=21 Score=20.96 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=17.1
Q ss_pred ccccccCCcccceeecCCCCccccceecchhcc
Q 030988 2 LQLLASCSFLTCNLVTNKDGNVFRVYGLASVGR 34 (168)
Q Consensus 2 Lr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s~ 34 (168)
++.+...|+++.+ ++++++|+.|.
T Consensus 42 l~~l~~~Gll~~~---------~~~l~lT~~G~ 65 (66)
T PF06969_consen 42 LEELQEDGLLEID---------GGRLRLTEKGR 65 (66)
T ss_dssp HHHHHHTTSEEE----------SSEEEE-TTTG
T ss_pred HHHHHHCCCEEEe---------CCEEEECcccC
Confidence 3456778899884 78999998875
No 339
>PF14881 Tubulin_3: Tubulin domain
Probab=29.55 E-value=75 Score=23.17 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=30.5
Q ss_pred HHHHHHcCCCCCCCeEEEecCCccHHH----HHHHHHCCCCeE
Q 030988 111 KKILEIYKGFEEINQLVDVAGGLGANI----SLLVSKYPQIRG 149 (168)
Q Consensus 111 ~~~~~~~~~~~~~~~vvDvGGg~G~~~----~~l~~~~P~l~~ 149 (168)
..+++.+|.+.++..++|+-+|=|.++ ..|...||+...
T Consensus 65 R~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i 107 (180)
T PF14881_consen 65 RFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPI 107 (180)
T ss_pred HHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCce
Confidence 368899997889999999977777655 456667888774
No 340
>PTZ00058 glutathione reductase; Provisional
Probab=29.50 E-value=60 Score=28.18 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=25.0
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
-||=||||+|.+..++..+.-+++++++|.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk 79 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEK 79 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEec
Confidence 467799999988888777777899999985
No 341
>PTZ00010 tubulin beta chain; Provisional
Probab=29.38 E-value=68 Score=26.97 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=28.0
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCCC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQI 147 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~l 147 (168)
..++.+|.+.++..+-.+|||+|. ++..|...||..
T Consensus 122 k~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~ 162 (445)
T PTZ00010 122 KEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDR 162 (445)
T ss_pred hhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCcc
Confidence 455778778889999999999983 555688889864
No 342
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=29.30 E-value=84 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=26.8
Q ss_pred HHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEE
Q 030988 113 ILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGI 150 (168)
Q Consensus 113 ~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~ 150 (168)
+.+..+ .....+++|+=||.|.+++.++++.-.+.++
T Consensus 285 a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gv 321 (432)
T COG2265 285 ALEWLE-LAGGERVLDLYCGVGTFGLPLAKRVKKVHGV 321 (432)
T ss_pred HHHHHh-hcCCCEEEEeccCCChhhhhhcccCCEEEEE
Confidence 344444 4555799999999999999999764444443
No 343
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=29.08 E-value=35 Score=24.00 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=25.6
Q ss_pred CCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 131 GGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 131 Gg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
||+|.=..-.+.++|++++.+.--+.....++...
T Consensus 62 CGtGiG~siaANKv~GIRaA~~~d~~~A~~ar~hN 96 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMVAAEVSDERSAYMTRGHN 96 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHHHc
Confidence 67888777788999999986666666666655443
No 344
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=28.88 E-value=1.3e+02 Score=23.66 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCeEEEecCCcc-----------HHHHHHHHHCCCCeEEEccc
Q 030988 122 EINQLVDVAGGLG-----------ANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 122 ~~~~vvDvGGg~G-----------~~~~~l~~~~P~l~~~v~Dl 154 (168)
+...++..|.+.+ .+...++++||++++++--.
T Consensus 157 gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~ 200 (293)
T COG2159 157 GVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHM 200 (293)
T ss_pred CCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEec
Confidence 4467778888666 68889999999999876543
No 345
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=28.87 E-value=22 Score=23.02 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=19.7
Q ss_pred cccccCCcc-cceeecCCCCccccceecchhccccC
Q 030988 3 QLLASCSFL-TCNLVTNKDGNVFRVYGLASVGRYLL 37 (168)
Q Consensus 3 r~L~~~gll-~~~~~~~~~~~~~~~y~lt~~s~~l~ 37 (168)
..|+.+||+ ++.. ..| ...|++|+.+..++
T Consensus 57 ~SLv~lGLV~~~~~---~~g--~k~Y~lT~~G~~~~ 87 (90)
T PF07381_consen 57 DSLVGLGLVEEEEE---KGG--FKYYRLTEKGKRIA 87 (90)
T ss_pred hhHHHcCCeeEeee---cCC--eeEEEeChhhhhHH
Confidence 468899999 4431 112 55799999887543
No 346
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.67 E-value=1.1e+02 Score=23.47 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCCCCeEEEecCCccHHHHHHHHHCCCC-eEEEccch
Q 030988 120 FEEINQLVDVAGGLGANISLLVSKYPQI-RGINFDLP 155 (168)
Q Consensus 120 ~~~~~~vvDvGGg~G~~~~~l~~~~P~l-~~~v~DlP 155 (168)
.-+.++.+|||.=+|.-+++++.+-|+= +++-+|.+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid 107 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEID 107 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecC
Confidence 4456899999999999999999999982 45777764
No 347
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=28.56 E-value=25 Score=20.51 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=17.6
Q ss_pred ccccccCCcccceeecCCCCccccceecchhc
Q 030988 2 LQLLASCSFLTCNLVTNKDGNVFRVYGLASVG 33 (168)
Q Consensus 2 Lr~L~~~gll~~~~~~~~~~~~~~~y~lt~~s 33 (168)
++.|...|++++..... |+. ...|++|+.|
T Consensus 39 i~~L~~~glv~~~~~~~-d~R-~~~~~LT~~G 68 (68)
T PF13463_consen 39 IKKLEEKGLVEKERDPH-DKR-SKRYRLTPAG 68 (68)
T ss_dssp HHHHHHTTSEEEEEESS-CTT-SEEEEE-HHH
T ss_pred HHHHHHCCCEEecCCCC-cCC-eeEEEeCCCC
Confidence 56788999998764211 111 2358888754
No 348
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=28.55 E-value=83 Score=26.63 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCeEEEecCCccHH--HHHHHHHCCCCeEEEccc
Q 030988 123 INQLVDVAGGLGAN--ISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 123 ~~~vvDvGGg~G~~--~~~l~~~~P~l~~~v~Dl 154 (168)
..+++-||||.--+ +..|++++|+.+.++++-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea 44 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEA 44 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEec
Confidence 45777799998754 455999999999888874
No 349
>PLN02507 glutathione reductase
Probab=28.46 E-value=67 Score=27.28 Aligned_cols=29 Identities=17% Similarity=0.036 Sum_probs=24.6
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 126 LVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 126 vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
++=||||+|-+..++.-+.-++++.++|.
T Consensus 28 vvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 28 LFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 66699999988888777777999999995
No 350
>PRK13748 putative mercuric reductase; Provisional
Probab=28.20 E-value=68 Score=27.44 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=25.0
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
-||=||||+|-+..++.-+.-.+++.++|..
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4666999999888877766668999999964
No 351
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=27.35 E-value=35 Score=24.03 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=25.4
Q ss_pred CCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 131 GGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 131 Gg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
||+|.=..-.+.++|++++.+.--+...+.++..+
T Consensus 63 CGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~hN 97 (142)
T PRK08621 63 DAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHN 97 (142)
T ss_pred cCCChhhhhhhhcCCCeEEEEECCHHHHHHHHHHc
Confidence 67887777788999999986655566666665443
No 352
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=27.03 E-value=71 Score=28.11 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=25.4
Q ss_pred CCeEEEecCCccHHHHHHHHHC-CCCeEEEccc
Q 030988 123 INQLVDVAGGLGANISLLVSKY-PQIRGINFDL 154 (168)
Q Consensus 123 ~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl 154 (168)
...|+=||||+.-++.++.-+. ++++++|+|.
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 3467779999988777766665 7999999995
No 353
>COG3016 PhuW Uncharacterized iron-regulated protein [Function unknown]
Probab=26.37 E-value=1.9e+02 Score=22.67 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCccH------HHHHHHHHCCCCeEEEc
Q 030988 91 AARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLGA------NISLLVSKYPQIRGINF 152 (168)
Q Consensus 91 ~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G~------~~~~l~~~~P~l~~~v~ 152 (168)
+|...+.|-.+|-.+.+..+..+++.+- ......|+=|.| .++ ....+.+.+|+++++++
T Consensus 197 np~~nk~~l~aqvt~dq~marrma~~L~-~~p~rkvlliAG-sfHt~kglGvp~hl~dl~~g~kvv~L 262 (295)
T COG3016 197 NPSSNKSFLDAQVTWDQAMARRMAKTLI-LHPDRKVLLIAG-SFHTYKGLGVPYHLKDLYPGVKVVVL 262 (295)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHH-hCCCcceEEEec-cchhhccCCcceeHHhhCCCcEEEEE
Confidence 6777778888888888888878888776 454344444443 333 45568889999998654
No 354
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=26.34 E-value=76 Score=26.62 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=25.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
-.|+=||||+.-.+.+..-+-.+++++++|.-
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 46777999999877776666678999999863
No 355
>PRK14727 putative mercuric reductase; Provisional
Probab=26.19 E-value=79 Score=26.58 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=25.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
..++-||+|+|-+..+..-+.-..+++++|..
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~ 48 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA 48 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45778999999888887777678899999864
No 356
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=25.97 E-value=83 Score=24.74 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=27.7
Q ss_pred CCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 121 EEINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 121 ~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.+...|+-.|......+..+++.||+.+++++|-
T Consensus 60 ~g~dlIi~~g~~~~~~~~~vA~~yPd~~F~~~d~ 93 (306)
T PF02608_consen 60 QGYDLIIGHGFEYSDALQEVAKEYPDTKFIIIDG 93 (306)
T ss_dssp TT-SEEEEESGGGHHHHHHHHTC-TTSEEEEESS
T ss_pred cCCCEEEEccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3445888888888899999999999999999884
No 357
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=25.93 E-value=31 Score=22.62 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=16.8
Q ss_pred EEEecCCccHHHHH-HHHHCCCCeE----EEccc
Q 030988 126 LVDVAGGLGANISL-LVSKYPQIRG----INFDL 154 (168)
Q Consensus 126 vvDvGGg~G~~~~~-l~~~~P~l~~----~v~Dl 154 (168)
=+|||||-|....+ +..--++-+. +..||
T Consensus 6 NIDIGcG~GNTmda~fRsct~htSyYy~S~~~Dl 39 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTSYYYLSTNHDL 39 (124)
T ss_pred ccccccCCCcchhhhhhccccccceEEEeecccc
Confidence 37999999975444 4333333332 55565
No 358
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=25.70 E-value=49 Score=26.36 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCCeEEEecCCccH-HHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 122 EINQLVDVAGGLGA-NISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 122 ~~~~vvDvGGg~G~-~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
...+++|||.|... |.+--++.| +.+++.-|. |..++.|
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A 142 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESA 142 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHH
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHH
Confidence 35799999998874 555555555 788887776 4444444
No 359
>PLN02697 lycopene epsilon cyclase
Probab=25.42 E-value=78 Score=27.30 Aligned_cols=31 Identities=13% Similarity=-0.141 Sum_probs=25.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.-|+=||||..-++.+..-+-++++++++|-
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~ 139 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGP 139 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecC
Confidence 3566699999998888777777999998874
No 360
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.24 E-value=1.4e+02 Score=22.84 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=27.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
+...|+..|.........++++||+.+.+++|-
T Consensus 57 g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 57 GYDLIFGTSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred CCCEEEECchhhhHHHHHHHHHCCCCEEEECCC
Confidence 445788888888889999999999999998875
No 361
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=24.97 E-value=81 Score=26.96 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=26.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
..|+=||||..-++.+++-+..+++++|+|.-
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~ 55 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDD 55 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 46777999999888877666679999999963
No 362
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=24.91 E-value=75 Score=27.03 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEcc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFD 153 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~D 153 (168)
..||=||||++-++.++.-+..+++++++|
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~ 241 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVA 241 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 467779999999888877777789998876
No 363
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=24.76 E-value=1.2e+02 Score=24.11 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHHHHHHHhhHHH----HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHC-CCCeEEEccc
Q 030988 97 LFNQSMHNHAALV----MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKY-PQIRGINFDL 154 (168)
Q Consensus 97 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~-P~l~~~v~Dl 154 (168)
.|..+|...++.. ..-++..++ ...-.+||.-|-|+|.++.+++++- |.=+..-||.
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfef 138 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEF 138 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEe
Confidence 4677777766642 124666677 7777899999999999999999986 4445566665
No 364
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=24.54 E-value=45 Score=26.96 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=10.2
Q ss_pred CCeEEEecCCcc
Q 030988 123 INQLVDVAGGLG 134 (168)
Q Consensus 123 ~~~vvDvGGg~G 134 (168)
-..+||||||+=
T Consensus 154 G~mvvDIGgGTT 165 (342)
T COG1077 154 GSMVVDIGGGTT 165 (342)
T ss_pred CCEEEEeCCCce
Confidence 479999999973
No 365
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.49 E-value=94 Score=25.77 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=24.3
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEccch
Q 030988 126 LVDVAGGLGANISLLVSKYPQIRGINFDLP 155 (168)
Q Consensus 126 vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP 155 (168)
.+-||||+|-.+.+=..+.-..++.++++|
T Consensus 23 ylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 23 YLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred eEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 345999999988887666678888888888
No 366
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=24.17 E-value=2.3e+02 Score=20.91 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEe--cCCccH-HHHHHHHHCCCCeEEEc---cchH
Q 030988 127 VDV--AGGLGA-NISLLVSKYPQIRGINF---DLPH 156 (168)
Q Consensus 127 vDv--GGg~G~-~~~~l~~~~P~l~~~v~---DlP~ 156 (168)
+|+ .+..|. +...+.+.+|+++++++ |-+.
T Consensus 46 ~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~ 81 (207)
T PRK11475 46 SAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEA 81 (207)
T ss_pred cccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHH
Confidence 476 455665 66667889999998665 5454
No 367
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=24.17 E-value=1.3e+02 Score=24.99 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=29.6
Q ss_pred HHHHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCC
Q 030988 110 MKKILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQI 147 (168)
Q Consensus 110 ~~~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l 147 (168)
|..++..-. |.....++|==||+|+++++.+...+++
T Consensus 180 AaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~ni 216 (381)
T COG0116 180 AAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANI 216 (381)
T ss_pred HHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhcccc
Confidence 335555555 8777899999999999999999988763
No 368
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=23.94 E-value=1.6e+02 Score=23.87 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=10.9
Q ss_pred CCeEEEecCCccH
Q 030988 123 INQLVDVAGGLGA 135 (168)
Q Consensus 123 ~~~vvDvGGg~G~ 135 (168)
...++|||||-|.
T Consensus 204 ~~~~idiGGGf~~ 216 (377)
T cd06843 204 DLDVVNVGGGIGV 216 (377)
T ss_pred CCcEEEecCcccc
Confidence 4689999999974
No 369
>PF15538 Toxin_61: Putative toxin 61
Probab=23.69 E-value=1.4e+02 Score=21.37 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=33.8
Q ss_pred hHhcHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCeEEEecCCcc
Q 030988 88 AMKAARRRNLFNQSMHNHAALVMKKILEIYKGFEEINQLVDVAGGLG 134 (168)
Q Consensus 88 ~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGg~G 134 (168)
+..+.|.+..|.+.- ++....+...++.+| |+....|..|..|.=
T Consensus 21 irgn~e~a~~F~~s~-G~~~~~~~~~m~GID-f~~PV~VetIn~Gk~ 65 (157)
T PF15538_consen 21 IRGNREIASDFFKSQ-GLTEADMESYMNGID-FSKPVKVETINRGKN 65 (157)
T ss_pred eccchHHHHHHHHHc-CCCHHHHHHHhccCC-cCCceEEEEeCCCCE
Confidence 445677777777763 555555678888999 999999999988753
No 370
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=23.62 E-value=40 Score=18.68 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=9.0
Q ss_pred CCeEEEecCCc
Q 030988 123 INQLVDVAGGL 133 (168)
Q Consensus 123 ~~~vvDvGGg~ 133 (168)
...+-|++||+
T Consensus 21 aN~iRDvqGGt 31 (46)
T PF02402_consen 21 ANYIRDVQGGT 31 (46)
T ss_pred hcceecCCCce
Confidence 46789999986
No 371
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=23.45 E-value=65 Score=26.68 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=25.5
Q ss_pred HHHcCCCCCCCeEEEecCCccH-----HHHHHHHHCCC
Q 030988 114 LEIYKGFEEINQLVDVAGGLGA-----NISLLVSKYPQ 146 (168)
Q Consensus 114 ~~~~~~~~~~~~vvDvGGg~G~-----~~~~l~~~~P~ 146 (168)
++..|.|+++..+--|.||+|. ++..|+.+||+
T Consensus 126 ad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypk 163 (448)
T KOG1374|consen 126 ADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPK 163 (448)
T ss_pred hcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchh
Confidence 4445558888888899999984 56668889987
No 372
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=23.45 E-value=1.7e+02 Score=21.70 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHcCCCCCCCeEEEecCCccH-HHHHHHHHCCCCeEEEccchH
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGA-NISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~-~~~~l~~~~P~l~~~v~DlP~ 156 (168)
.|+..-+ .-...+|-=+|.+.|. ++..++..+|.++++|.--|+
T Consensus 11 ~~L~~~p-~v~~~~Igi~G~SkGaelALllAs~~~~i~avVa~~ps 55 (213)
T PF08840_consen 11 DWLKSHP-EVDPDKIGIIGISKGAELALLLASRFPQISAVVAISPS 55 (213)
T ss_dssp HHHHCST-TB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--
T ss_pred HHHHhCC-CCCCCCEEEEEECHHHHHHHHHHhcCCCccEEEEeCCc
Confidence 4555554 2223566669999996 777788999999988765554
No 373
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=23.22 E-value=40 Score=23.12 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=10.1
Q ss_pred CCCCeEEEecCCc
Q 030988 121 EEINQLVDVAGGL 133 (168)
Q Consensus 121 ~~~~~vvDvGGg~ 133 (168)
....-.||||||-
T Consensus 55 ~~~~gkV~lGGGl 67 (126)
T PF12757_consen 55 DENAGKVNLGGGL 67 (126)
T ss_pred ccCCCeeeCCCCc
Confidence 3457899999985
No 374
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=23.18 E-value=2.4e+02 Score=20.29 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHcCCCCCCCeEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHHhhC
Q 030988 112 KILEIYKGFEEINQLVDVAGGLGANISLLVSKYPQIRGINFDL-PHVIKDA 161 (168)
Q Consensus 112 ~~~~~~~~~~~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl-P~vi~~a 161 (168)
.++..+- ..-..|+|-=+|+|..+.+..+. +=+++.+|+ |.-++.|
T Consensus 183 ~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 183 RLIKAST--NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHHHS---TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHH
T ss_pred HHHHhhh--ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHh
Confidence 4555554 33469999999999999998887 666999998 4455443
No 375
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=22.93 E-value=95 Score=29.17 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=25.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
.+|+=||||++-++.+.--+.-+.+++|+|.
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek 568 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEK 568 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 5788899999987777555556889999984
No 376
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=22.83 E-value=1.7e+02 Score=24.11 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=9.7
Q ss_pred CeEEEecCCcc
Q 030988 124 NQLVDVAGGLG 134 (168)
Q Consensus 124 ~~vvDvGGg~G 134 (168)
-.++|||||-|
T Consensus 204 l~~ldiGGGf~ 214 (394)
T cd06831 204 MNMLDIGGGFT 214 (394)
T ss_pred CCEEEeCCCcC
Confidence 68999999975
No 377
>PRK05354 arginine decarboxylase; Provisional
Probab=22.19 E-value=1.3e+02 Score=26.71 Aligned_cols=12 Identities=58% Similarity=0.949 Sum_probs=10.5
Q ss_pred CeEEEecCCccH
Q 030988 124 NQLVDVAGGLGA 135 (168)
Q Consensus 124 ~~vvDvGGg~G~ 135 (168)
...||||||-|.
T Consensus 284 l~~LDIGGGlgV 295 (634)
T PRK05354 284 IQYLDVGGGLGV 295 (634)
T ss_pred CCEEEeCCCcCc
Confidence 689999999974
No 378
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=22.03 E-value=46 Score=26.75 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=10.6
Q ss_pred CeEEEecCCccH
Q 030988 124 NQLVDVAGGLGA 135 (168)
Q Consensus 124 ~~vvDvGGg~G~ 135 (168)
..++|||||-|.
T Consensus 189 ~~~lDiGGGf~v 200 (346)
T cd06829 189 LKWLNLGGGHHI 200 (346)
T ss_pred CcEEEcCCCcCC
Confidence 689999999975
No 379
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.54 E-value=1.1e+02 Score=25.22 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.5
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 125 QLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 125 ~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
-++-||||+|-++.+--.+-=..++.++|.
T Consensus 21 DLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 21 DLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 345599999998887766666778888886
No 380
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=21.48 E-value=39 Score=23.91 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=28.3
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEccchHHHhhCCCCC
Q 030988 129 VAGGLGANISLLVSKYPQIRGINFDLPHVIKDAPSYQ 165 (168)
Q Consensus 129 vGGg~G~~~~~l~~~~P~l~~~v~DlP~vi~~a~~~~ 165 (168)
+-||+|.=..-.+.++|++++.+.--+.....++...
T Consensus 64 liCGtGiG~siaANK~~GiRAA~~~d~~sA~~ar~hN 100 (148)
T TIGR02133 64 VIGGSGNGEAIAANKVKGARAALAWDTASAGRARLHN 100 (148)
T ss_pred EEcCCChhheeeecccCCeEEEEECCHHHHHHHHHHc
Confidence 5678998777788899999986666677777666554
No 381
>PTZ00367 squalene epoxidase; Provisional
Probab=21.35 E-value=1.1e+02 Score=26.61 Aligned_cols=31 Identities=6% Similarity=0.078 Sum_probs=25.8
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
..|+=||||.+-.+.+++-+..+.+++|+|.
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr 64 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 4577799999988888777777899999996
No 382
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=21.31 E-value=2.1e+02 Score=21.93 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCeEEEecCCcc--HHHHHHHHHCCCCeEEE
Q 030988 123 INQLVDVAGGLG--ANISLLVSKYPQIRGIN 151 (168)
Q Consensus 123 ~~~vvDvGGg~G--~~~~~l~~~~P~l~~~v 151 (168)
...+|||+--.+ .+.-.++++||+|.+++
T Consensus 53 ~t~v~Dv~d~~~~~~lvewLkk~~P~lNvli 83 (245)
T COG3967 53 HTEVCDVADRDSRRELVEWLKKEYPNLNVLI 83 (245)
T ss_pred heeeecccchhhHHHHHHHHHhhCCchheee
Confidence 368899997666 48888999999998643
No 383
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=21.23 E-value=97 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=27.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDL 154 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~Dl 154 (168)
..||=||||..-++.++.-+-++++++++|-
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~ 194 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGARVILVDE 194 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 5688899999999999888889999999985
No 384
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=21.03 E-value=2.9e+02 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=16.6
Q ss_pred ecCCccHHHH----HHHHHCCCCeEEEccc
Q 030988 129 VAGGLGANIS----LLVSKYPQIRGINFDL 154 (168)
Q Consensus 129 vGGg~G~~~~----~l~~~~P~l~~~v~Dl 154 (168)
++.|+|.... .+....|+++++.++-
T Consensus 190 ~~vGtGGt~aGi~~~lk~~~~~~kVigv~~ 219 (329)
T PRK14045 190 VAVGSGGTLAGLSLGLAILNAEWRVVGIAV 219 (329)
T ss_pred EeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 5555665444 4555569999877764
No 385
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=20.97 E-value=1e+02 Score=26.19 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=26.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 030988 124 NQLVDVAGGLGANISLLVSKYPQIRGINFDLPH 156 (168)
Q Consensus 124 ~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~ 156 (168)
.-||=||+|..-++.++..+...++++|++.-.
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 457779999988888877777789999998643
No 386
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=20.75 E-value=88 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=20.4
Q ss_pred eEEEecCCccHHHH--HHHHHCCCCeEEEcc
Q 030988 125 QLVDVAGGLGANIS--LLVSKYPQIRGINFD 153 (168)
Q Consensus 125 ~vvDvGGg~G~~~~--~l~~~~P~l~~~v~D 153 (168)
-||=||.|+..++. .+.++.|++++.+++
T Consensus 78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE 108 (328)
T KOG2960|consen 78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIE 108 (328)
T ss_pred ceEEECCCccccceeeeeeccCCCceEEEEE
Confidence 45557776665444 488899999987665
No 387
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=20.66 E-value=3.4e+02 Score=21.77 Aligned_cols=38 Identities=3% Similarity=0.003 Sum_probs=22.9
Q ss_pred cCCcchHHHhcCCchhHhhcCCCchhHHh--HhcHHHHHHHHHHHHHh
Q 030988 60 PWYHLKDCLLEGTLPFMKAHNAKNPFEYA--MKAARRRNLFNQSMHNH 105 (168)
Q Consensus 60 ~~~~L~~~l~~g~~~~~~~~g~~~~~e~~--~~~p~~~~~f~~~m~~~ 105 (168)
+|.++.+-+..|.. .++++|+ .++|+..+.+.++...+
T Consensus 10 ~~~~~~~~~~~~~~--------~~~~~ylgl~~~~~~~~~~~~~~~~~ 49 (346)
T TIGR03576 10 ALEIIREKISRGGR--------DSLYDLTGLAGGFKIDEEDLELLETY 49 (346)
T ss_pred HHHHHHHHHhccCC--------ccccccccCCCChhHHHHHHHHHHHh
Confidence 56666665544422 3344444 57888877777776655
No 388
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=20.61 E-value=3.1e+02 Score=21.41 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=23.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEccchHHH
Q 030988 122 EINQLVDVAGGLGANISLLVSKYPQIRGINFDLPHVI 158 (168)
Q Consensus 122 ~~~~vvDvGGg~G~~~~~l~~~~P~l~~~v~DlP~vi 158 (168)
+...||-|| |-|.++.+.+.+-=-=+.+++|.-.|.
T Consensus 31 ~~V~VvGiG-GVGSw~veALaRsGig~itlID~D~v~ 66 (263)
T COG1179 31 AHVCVVGIG-GVGSWAVEALARSGIGRITLIDMDDVC 66 (263)
T ss_pred CcEEEEecC-chhHHHHHHHHHcCCCeEEEEeccccc
Confidence 345666666 588888887766444467888876543
No 389
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=20.22 E-value=3.5e+02 Score=19.63 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=22.4
Q ss_pred CeEEE--ecCCccH-HHHHHHHHCCCCeEEEcc
Q 030988 124 NQLVD--VAGGLGA-NISLLVSKYPQIRGINFD 153 (168)
Q Consensus 124 ~~vvD--vGGg~G~-~~~~l~~~~P~l~~~v~D 153 (168)
-.||| +|+|+|. +..++..+.|+.+.+|+-
T Consensus 56 yAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 56 YAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 45666 5889997 555688889999987653
No 390
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=20.10 E-value=1.5e+02 Score=26.20 Aligned_cols=13 Identities=54% Similarity=0.795 Sum_probs=11.0
Q ss_pred CCeEEEecCCccH
Q 030988 123 INQLVDVAGGLGA 135 (168)
Q Consensus 123 ~~~vvDvGGg~G~ 135 (168)
.-.++|||||-|.
T Consensus 276 ~l~~LDIGGGlgV 288 (624)
T TIGR01273 276 KITYVDVGGGLGV 288 (624)
T ss_pred CCCEEEeCCCcCC
Confidence 3689999999983
Done!