BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030989
MDIQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKPPQDAHNQ
IPTLLEYLKPPQPQDGDNGIPTPLDNHIPTPLERLKPLQPEDGDNNHIPTPLDLPKPLLP
PPVPEPSYPPFYARLVYESWGGSCDNRVYCRGRSSDCTCEENPPCSIM

High Scoring Gene Products

Symbol, full name Information P value
AT4G16380 protein from Arabidopsis thaliana 5.4e-23
AT1G49420 protein from Arabidopsis thaliana 1.8e-17
AT1G51090 protein from Arabidopsis thaliana 2.5e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030989
        (168 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006589875 - symbol:AT4G16380 species:3702 "Ar...   200  5.4e-23   2
TAIR|locus:2010192 - symbol:AT1G49420 species:3702 "Arabi...   180  1.8e-17   2
TAIR|locus:2026042 - symbol:AT1G51090 species:3702 "Arabi...   164  2.5e-16   2


>TAIR|locus:1006589875 [details] [associations]
            symbol:AT4G16380 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR006121 GO:GO:0009506 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0046872 EMBL:AL161543 GO:GO:0030001
            SUPFAM:SSF55008 IPI:IPI00895677 RefSeq:NP_974559.5 UniGene:At.24999
            ProteinModelPortal:B3H4A8 SMR:B3H4A8 PRIDE:B3H4A8
            EnsemblPlants:AT4G16380.1 GeneID:2745712 KEGG:ath:AT4G16380
            TAIR:At4g16380 eggNOG:NOG294964 HOGENOM:HOG000091096 OMA:DYFSEEN
            ProtClustDB:CLSN2927421 Genevestigator:B3H4A8 Uniprot:B3H4A8
        Length = 254

 Score = 200 (75.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 54/105 (51%), Positives = 61/105 (58%)

Query:     3 IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKPPQDAHNQIP 62
             I+DQLFDEK+N V IKVV CSPE I DKL  KG GSIK+IEI+EP   PKPPQ    Q  
Sbjct:    37 IRDQLFDEKSNIVIIKVVCCSPERIMDKLCSKGGGSIKTIEIVEP---PKPPQPQPQQ-- 91

Query:    63 TLLEYLKPPQ-PQDGDNGIPT-PLDNHIPTPLERLK----PLQPE 101
                    PPQ P+D     P  P +   P   E+LK    P QPE
Sbjct:    92 -------PPQKPKDAQPKAPEKPKEPEKPKQPEKLKEPEKPKQPE 129

 Score = 80 (33.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 21/42 (50%), Positives = 21/42 (50%)

Query:   132 YARLVYESWGGSCDNR--VY--CRGRSSDCTCEENPP-CSIM 168
             Y R VYESWGG C      Y  C     D   EENP  CSIM
Sbjct:   213 YGRPVYESWGGGCPPPPPAYRQCHVTRCDYFSEENPQSCSIM 254


>TAIR|locus:2010192 [details] [associations]
            symbol:AT1G49420 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 EMBL:CP002684 GO:GO:0046872
            GO:GO:0030001 SUPFAM:SSF55008 IPI:IPI00527771 RefSeq:NP_175367.2
            UniGene:At.52095 ProteinModelPortal:F4I1R5
            EnsemblPlants:AT1G49420.1 GeneID:841366 KEGG:ath:AT1G49420
            OMA:NGYDERP Uniprot:F4I1R5
        Length = 189

 Score = 180 (68.4 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 46/109 (42%), Positives = 59/109 (54%)

Query:     3 IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAG----KPKPPQDAH 58
             ++DQ F+E+TNTVTIKVV CSPE + DKL  KG G+IK IE ++PA     KPK P+   
Sbjct:    38 VRDQKFEEETNTVTIKVVCCSPEKVMDKLCSKGRGAIKLIETIDPAKHVAQKPKEPEKPK 97

Query:    59 N-QIPTLLEYLKPPQ-PQDGDNGIPTPLDNHIPTPLERLKPLQPEDGDN 105
               + P   E  KP   P  GD         + P P+    P+   DG N
Sbjct:    98 EAEKPKEPEKPKPAAAPAQGDPSSQRVTHGYNPPPMMG-HPVPWSDGPN 145

 Score = 47 (21.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query:   134 RLVYESWGGSCDNRVYCRGRSSDCTCEENPPCSIM 168
             R +Y S+GG         GRS     EE P CSIM
Sbjct:   157 RPIYNSYGGWQPPPSQYGGRSH--YEEEQPSCSIM 189


>TAIR|locus:2026042 [details] [associations]
            symbol:AT1G51090 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] [GO:0050832 "defense response to fungus"
            evidence=IEP] [GO:0009409 "response to cold" evidence=RCA]
            [GO:0009414 "response to water deprivation" evidence=RCA]
            [GO:0009737 "response to abscisic acid stimulus" evidence=RCA]
            InterPro:IPR006121 Pfam:PF00403 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0050832 GO:GO:0046872 GO:GO:0030001
            SUPFAM:SSF55008 EMBL:AC079828 HOGENOM:HOG000091096 EMBL:AY035097
            EMBL:AY062944 IPI:IPI00520148 PIR:B96548 RefSeq:NP_175520.1
            UniGene:At.17181 ProteinModelPortal:Q9C684 SMR:Q9C684
            EnsemblPlants:AT1G51090.1 GeneID:841532 KEGG:ath:AT1G51090
            TAIR:At1g51090 eggNOG:euNOG12392 InParanoid:Q9C684 OMA:CHEDMNS
            PhylomeDB:Q9C684 ProtClustDB:CLSN2912835 ArrayExpress:Q9C684
            Genevestigator:Q9C684 Uniprot:Q9C684
        Length = 171

 Score = 164 (62.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 44/99 (44%), Positives = 54/99 (54%)

Query:     3 IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILEPAGKPKPPQDAHNQIP 62
             I D+LFDEK+NT+ IKVV   PE + +KL  KG+GSIKSI ILEP  KP  PQ    Q P
Sbjct:    33 ITDELFDEKSNTIIIKVVCYDPERLMNKLCYKGDGSIKSIVILEPP-KPPQPQPQPPQKP 91

Query:    63 TLLEYLKPPQPQDGDNGIPTPL----DNHIPTPLERLKP 97
             T      P Q Q      P P+     +  P P+   +P
Sbjct:    92 TA-PAPAPAQAQAPALVRPAPVPVLVSSSAPQPMPMWQP 129

 Score = 52 (23.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 9/11 (81%), Positives = 9/11 (81%)

Query:   132 YARLVYESWGG 142
             Y R VYESWGG
Sbjct:   144 YGRPVYESWGG 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.137   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       146   0.00079  103 3  11 23  0.40    32
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  157 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.60u 0.11s 17.71t   Elapsed:  00:00:01
  Total cpu time:  17.60u 0.11s 17.71t   Elapsed:  00:00:01
  Start:  Fri May 10 06:51:43 2013   End:  Fri May 10 06:51:44 2013

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