Query 030989
Match_columns 168
No_of_seqs 37 out of 39
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 07:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 89.9 0.43 9.4E-06 32.5 3.3 36 3-39 32-67 (73)
2 KOG1924 RhoA GTPase effector D 65.8 18 0.0004 37.1 6.6 24 58-81 547-570 (1102)
3 PF00403 HMA: Heavy-metal-asso 65.0 7.1 0.00015 24.6 2.4 34 2-35 25-60 (62)
4 PF08260 Kinin: Insect kinin p 59.1 3.6 7.9E-05 19.7 0.2 8 134-141 1-8 (8)
5 KOG1924 RhoA GTPase effector D 59.0 13 0.00028 38.1 4.2 21 61-81 563-583 (1102)
6 PF05258 DUF721: Protein of un 46.8 26 0.00056 22.9 2.9 32 11-44 47-89 (89)
7 PF12701 LSM14: Scd6-like Sm d 30.0 66 0.0014 24.1 3.1 42 8-50 28-82 (96)
8 PF02575 YbaB_DNA_bd: YbaB/Ebf 26.6 79 0.0017 21.8 2.8 22 11-46 28-49 (93)
9 PF11025 GP40: Glycoprotein GP 25.7 48 0.001 27.8 1.9 18 2-19 51-68 (165)
10 PRK00153 hypothetical protein; 23.0 1E+02 0.0022 22.5 2.9 30 3-46 26-57 (104)
11 PF01873 eIF-5_eIF-2B: Domain 22.6 69 0.0015 24.8 2.1 32 7-40 64-103 (125)
12 PF11503 DUF3215: Protein of u 20.9 70 0.0015 23.8 1.8 17 5-21 13-29 (77)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=89.90 E-value=0.43 Score=32.49 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.8
Q ss_pred cccceecccCCeEEEEEeecChhhhhhhhcccCCCce
Q 030989 3 IQDQLFDEKTNTVTIKVVSCSPENIRDKLSCKGEGSI 39 (168)
Q Consensus 3 Irdq~yDEK~NtVtIkVVcc~PEKI~~KL~CKG~~~I 39 (168)
+.+...|-++++||+++- .+|.+|.++|..+|++..
T Consensus 32 V~~v~id~~~~kvtV~g~-~~p~~vl~~l~k~~~k~~ 67 (73)
T KOG1603|consen 32 VESVDIDIKKQKVTVKGN-VDPVKLLKKLKKTGGKRA 67 (73)
T ss_pred eEEEEecCCCCEEEEEEe-cCHHHHHHHHHhcCCCce
Confidence 456788999999999997 799999999999775543
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=65.82 E-value=18 Score=37.11 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=12.9
Q ss_pred CCCCCCccccCCCCCCCCCCCCCC
Q 030989 58 HNQIPTLLEYLKPPQPQDGDNGIP 81 (168)
Q Consensus 58 ~~k~P~~~e~~~PPpP~~g~~a~p 81 (168)
++++|--.+.+.||+|--|.+|.|
T Consensus 547 pPPlpggag~PPPPpplPg~aG~P 570 (1102)
T KOG1924|consen 547 PPPLPGGAGPPPPPPPLPGIAGGP 570 (1102)
T ss_pred CCCCCCCCCCCccCCCCCcccCCC
Confidence 444555555555555555555554
No 3
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=64.98 E-value=7.1 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=26.4
Q ss_pred ccccceecccCCeEEEEEeecC--hhhhhhhhcccC
Q 030989 2 DIQDQLFDEKTNTVTIKVVSCS--PENIRDKLSCKG 35 (168)
Q Consensus 2 qIrdq~yDEK~NtVtIkVVcc~--PEKI~~KL~CKG 35 (168)
.|++...|-++++|+|+..... +++|.++|.=.|
T Consensus 25 GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 25 GVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp TEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhC
Confidence 3678889999999999996533 588888876443
No 4
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=59.08 E-value=3.6 Score=19.68 Aligned_cols=8 Identities=38% Similarity=1.103 Sum_probs=6.2
Q ss_pred ceehhhcC
Q 030989 134 RLVYESWG 141 (168)
Q Consensus 134 r~vy~s~g 141 (168)
+|.|.|||
T Consensus 1 ~pafnswg 8 (8)
T PF08260_consen 1 DPAFNSWG 8 (8)
T ss_pred CccccccC
Confidence 46788998
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.95 E-value=13 Score=38.10 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=10.2
Q ss_pred CCCccccCCCCCCCCCCCCCC
Q 030989 61 IPTLLEYLKPPQPQDGDNGIP 81 (168)
Q Consensus 61 ~P~~~e~~~PPpP~~g~~a~p 81 (168)
.|.-.+-+.||||.-|..+.|
T Consensus 563 lPg~aG~PPpPppppg~~gpp 583 (1102)
T KOG1924|consen 563 LPGIAGGPPPPPPPPGGGGPP 583 (1102)
T ss_pred CCcccCCCCccCCCCCCCCCC
Confidence 344444455555555555544
No 6
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=46.85 E-value=26 Score=22.93 Aligned_cols=32 Identities=34% Similarity=0.289 Sum_probs=25.4
Q ss_pred cCCeEEEEEeecCh----------hhhhhhhcccCC-CceeeEEE
Q 030989 11 KTNTVTIKVVSCSP----------ENIRDKLSCKGE-GSIKSIEI 44 (168)
Q Consensus 11 K~NtVtIkVVcc~P----------EKI~~KL~CKG~-~~IK~IEI 44 (168)
++++++|.| .|+ ++|.+||.=+++ ..|++|+|
T Consensus 47 ~~g~L~i~v--~~~~~~~~L~~~~~~il~~l~~~~g~~~i~~I~~ 89 (89)
T PF05258_consen 47 KDGTLVIEV--DSSAWAQELRYMKPQILKKLNEFLGFPAIKDIRF 89 (89)
T ss_pred ECCEEEEEE--CCHHHHHHHHHHHHHHHHHHHHHcCCCCccEeeC
Confidence 577877777 354 578899988888 99999986
No 7
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=29.99 E-value=66 Score=24.07 Aligned_cols=42 Identities=29% Similarity=0.528 Sum_probs=27.8
Q ss_pred ecccCCeEEEEEeecC-hh------------hhhhhhcccCCCceeeEEEeCCCCC
Q 030989 8 FDEKTNTVTIKVVSCS-PE------------NIRDKLSCKGEGSIKSIEILEPAGK 50 (168)
Q Consensus 8 yDEK~NtVtIkVVcc~-PE------------KI~~KL~CKG~~~IK~IEI~~PpkP 50 (168)
.|..++||+++=|.|. -| ++-+-+.=+|. -||+++|++++++
T Consensus 28 Id~~~sTItL~nVr~~GtE~R~~~~~ipp~~~v~~~I~Fr~s-DIkdL~v~e~~~~ 82 (96)
T PF12701_consen 28 IDTEDSTITLKNVRSFGTEGRPTDREIPPSDEVYDYIVFRGS-DIKDLKVIEPPPP 82 (96)
T ss_dssp EETTTTEEEEEEEEETTETTSS-SS---C-CSSSSEEEEETT-TEEEEEECE-S-S
T ss_pred EcCCCCEEEeeeeeecCcCCCCcCcccCCCCceeeEEEEEcc-ccceEEEEcCCCC
Confidence 4677899999877665 22 34444555554 5999999998776
No 8
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=26.59 E-value=79 Score=21.80 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=15.4
Q ss_pred cCCeEEEEEeecChhhhhhhhcccCCCceeeEEEeC
Q 030989 11 KTNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILE 46 (168)
Q Consensus 11 K~NtVtIkVVcc~PEKI~~KL~CKG~~~IK~IEI~~ 46 (168)
.++.|+|+| -|.+.|++|+|-+
T Consensus 28 ~~g~V~V~v--------------~g~g~v~~i~i~~ 49 (93)
T PF02575_consen 28 GDGLVTVTV--------------NGNGEVVDIEIDP 49 (93)
T ss_dssp TCCTEEEEE--------------ETTS-EEEEEE-G
T ss_pred CCCEEEEEE--------------ecCceEEEEEEeh
Confidence 366788877 3889999999854
No 9
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=25.73 E-value=48 Score=27.77 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.6
Q ss_pred ccccceecccCCeEEEEE
Q 030989 2 DIQDQLFDEKTNTVTIKV 19 (168)
Q Consensus 2 qIrdq~yDEK~NtVtIkV 19 (168)
++.+..|...+|||+|+|
T Consensus 51 ev~~VtFeksd~TvkIkv 68 (165)
T PF11025_consen 51 EVKSVTFEKSDSTVKIKV 68 (165)
T ss_pred ceEEEEEeccCCeEEEEE
Confidence 456778999999999999
No 10
>PRK00153 hypothetical protein; Validated
Probab=23.02 E-value=1e+02 Score=22.51 Aligned_cols=30 Identities=13% Similarity=0.291 Sum_probs=21.3
Q ss_pred cccceeccc--CCeEEEEEeecChhhhhhhhcccCCCceeeEEEeC
Q 030989 3 IQDQLFDEK--TNTVTIKVVSCSPENIRDKLSCKGEGSIKSIEILE 46 (168)
Q Consensus 3 Irdq~yDEK--~NtVtIkVVcc~PEKI~~KL~CKG~~~IK~IEI~~ 46 (168)
+.+..|..+ ++.|+|++- |.+.|++|+|-+
T Consensus 26 l~~~~~~~~s~~G~V~V~v~--------------G~~~v~~i~Id~ 57 (104)
T PRK00153 26 LAQMEVEGEAGGGLVKVTMT--------------GKKEVKRVKIDP 57 (104)
T ss_pred HhccEEEEEECCCeEEEEEe--------------cCceEEEEEECH
Confidence 445556655 467888772 789999999854
No 11
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=22.57 E-value=69 Score=24.77 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=26.5
Q ss_pred eecccCCeEEEEEeecChhhhhhhh--------cccCCCcee
Q 030989 7 LFDEKTNTVTIKVVSCSPENIRDKL--------SCKGEGSIK 40 (168)
Q Consensus 7 ~yDEK~NtVtIkVVcc~PEKI~~KL--------~CKG~~~IK 40 (168)
.||++ +..+|.| -+++++|.+.| .|..|+...
T Consensus 64 ~id~~-~~lii~G-~~~~~~i~~~L~~fI~~yVlC~~C~spd 103 (125)
T PF01873_consen 64 SIDGK-GRLIING-RFSSKQIQDLLDKFIKEYVLCPECGSPD 103 (125)
T ss_dssp EEETT-TEEEEES-SSSCCHHHHHHHHHHCHHSSCTSTSSSS
T ss_pred EECCC-CEEEEEE-ecCHHHHHHHHHHHHHHEEEcCCCCCCc
Confidence 47777 9999999 56999998887 688888764
No 12
>PF11503 DUF3215: Protein of unknown function (DUF3215); InterPro: IPR021591 This family of proteins with unknown function appears to be restricted to Saccharomycetaceae. ; PDB: 2GRG_A.
Probab=20.90 E-value=70 Score=23.81 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.4
Q ss_pred cceecccCCeEEEEEee
Q 030989 5 DQLFDEKTNTVTIKVVS 21 (168)
Q Consensus 5 dq~yDEK~NtVtIkVVc 21 (168)
-.+|||++|-|.-+++.
T Consensus 13 tl~FDen~nlIdasGIG 29 (77)
T PF11503_consen 13 TLTFDENNNLIDASGIG 29 (77)
T ss_dssp EEEE-TTS-EEEEEEGG
T ss_pred EEEEcCCCCEEEccccc
Confidence 46899999999999987
Done!