Query 030992
Match_columns 168
No_of_seqs 105 out of 265
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3339 Predicted glycosyltran 100.0 2.7E-48 5.9E-53 312.7 10.0 140 17-165 13-152 (211)
2 PF08660 Alg14: Oligosaccharid 100.0 7.5E-37 1.6E-41 243.8 9.0 112 47-165 1-112 (170)
3 COG0707 MurG UDP-N-acetylgluco 98.3 1.5E-06 3.3E-11 76.7 8.0 107 46-166 3-112 (357)
4 PRK12446 undecaprenyldiphospho 98.3 2.3E-06 5E-11 74.7 7.0 102 50-166 8-112 (352)
5 PRK00726 murG undecaprenyldiph 97.8 0.00012 2.5E-09 62.5 8.6 103 45-162 2-108 (357)
6 cd03785 GT1_MurG MurG is an N- 97.5 0.00053 1.2E-08 57.7 7.9 98 49-161 5-105 (350)
7 TIGR01133 murG undecaprenyldip 96.7 0.0093 2E-07 50.1 8.1 99 48-161 5-106 (348)
8 TIGR00661 MJ1255 conserved hyp 95.1 0.16 3.6E-06 43.2 8.9 97 48-157 4-105 (321)
9 TIGR00215 lpxB lipid-A-disacch 94.9 0.027 5.8E-07 49.7 3.6 95 46-162 7-105 (385)
10 cd03808 GT1_cap1E_like This fa 94.5 0.17 3.7E-06 40.7 7.2 91 46-157 1-92 (359)
11 PF13477 Glyco_trans_4_2: Glyc 92.8 1.1 2.3E-05 32.7 8.3 83 47-156 2-85 (139)
12 PLN03183 acetylglucosaminyltra 91.8 3.5 7.7E-05 37.6 11.9 96 43-146 76-172 (421)
13 cd03812 GT1_CapH_like This fam 91.3 1.5 3.2E-05 36.3 8.3 90 47-159 2-94 (358)
14 cd04951 GT1_WbdM_like This fam 91.2 0.71 1.5E-05 38.1 6.4 88 47-158 2-92 (360)
15 TIGR03088 stp2 sugar transfera 91.0 1.2 2.5E-05 37.9 7.7 87 46-156 6-92 (374)
16 cd03806 GT1_ALG11_like This fa 91.0 1.2 2.6E-05 39.5 8.1 39 123-161 85-124 (419)
17 cd03794 GT1_wbuB_like This fam 90.3 0.95 2.1E-05 36.7 6.2 93 54-154 14-108 (394)
18 cd03819 GT1_WavL_like This fam 89.9 1.4 3.1E-05 36.3 7.1 91 46-159 2-92 (355)
19 TIGR03568 NeuC_NnaA UDP-N-acet 89.6 1.8 3.9E-05 38.0 7.9 107 45-165 1-114 (365)
20 TIGR00236 wecB UDP-N-acetylglu 89.5 2.6 5.6E-05 36.1 8.6 94 45-154 1-95 (365)
21 PF03033 Glyco_transf_28: Glyc 89.1 1.4 3E-05 32.3 5.8 99 47-162 2-105 (139)
22 PLN02949 transferase, transfer 88.7 11 0.00024 34.3 12.5 114 44-160 33-155 (463)
23 cd03807 GT1_WbnK_like This fam 87.4 4.8 0.0001 32.3 8.5 89 47-158 5-93 (365)
24 PRK13609 diacylglycerol glucos 87.0 2.2 4.8E-05 36.7 6.7 27 135-161 94-120 (380)
25 TIGR03492 conserved hypothetic 86.5 1.8 3.9E-05 38.5 6.0 91 52-156 3-104 (396)
26 cd03786 GT1_UDP-GlcNAc_2-Epime 84.8 8.5 0.00018 32.4 9.0 95 46-154 1-97 (363)
27 PRK00025 lpxB lipid-A-disaccha 84.1 1.4 3E-05 37.7 3.9 31 124-154 64-94 (380)
28 PRK05749 3-deoxy-D-manno-octul 81.6 36 0.00077 29.8 12.5 40 46-85 52-91 (425)
29 PF13528 Glyco_trans_1_3: Glyc 79.6 22 0.00047 29.5 9.5 87 45-151 1-100 (318)
30 cd03801 GT1_YqgM_like This fam 78.5 12 0.00027 29.6 7.4 88 53-160 13-100 (374)
31 PF01795 Methyltransf_5: MraW 74.7 3.2 7E-05 36.4 3.2 37 47-91 25-61 (310)
32 cd03811 GT1_WabH_like This fam 72.5 11 0.00024 29.8 5.7 26 53-79 11-36 (353)
33 PLN02871 UDP-sulfoquinovose:DA 72.1 6.8 0.00015 35.0 4.8 39 42-82 56-100 (465)
34 TIGR03022 WbaP_sugtrans Undeca 71.3 22 0.00048 31.9 7.9 26 48-73 128-153 (456)
35 cd03796 GT1_PIG-A_like This fa 69.8 23 0.00051 30.6 7.5 87 53-156 13-99 (398)
36 COG0381 WecB UDP-N-acetylgluco 67.7 49 0.0011 30.0 9.2 101 43-156 2-103 (383)
37 cd05013 SIS_RpiR RpiR-like pro 66.9 28 0.00061 24.8 6.4 40 44-85 60-99 (139)
38 cd03802 GT1_AviGT4_like This f 66.9 56 0.0012 26.5 8.8 21 138-158 80-100 (335)
39 TIGR03111 glyc2_xrt_Gpos1 puta 66.3 98 0.0021 27.7 11.8 35 45-82 51-89 (439)
40 cd03800 GT1_Sucrose_synthase T 65.5 10 0.00022 31.8 4.3 21 53-73 20-40 (398)
41 PRK13608 diacylglycerol glucos 65.4 9.5 0.00021 33.4 4.2 33 124-156 83-115 (391)
42 cd03805 GT1_ALG2_like This fam 65.3 57 0.0012 27.5 8.8 19 141-159 90-108 (392)
43 PF01380 SIS: SIS domain SIS d 60.7 58 0.0013 23.1 7.8 28 43-70 52-79 (131)
44 PRK06849 hypothetical protein; 58.3 91 0.002 27.2 9.1 85 43-156 3-87 (389)
45 PF11395 DUF2873: Protein of u 57.8 29 0.00063 21.5 4.1 26 5-30 7-32 (43)
46 cd03823 GT1_ExpE7_like This fa 57.7 23 0.00051 28.5 4.9 21 53-73 14-34 (359)
47 cd03816 GT1_ALG1_like This fam 57.4 1.1E+02 0.0025 26.8 9.6 90 49-152 9-102 (415)
48 PRK15204 undecaprenyl-phosphat 56.7 60 0.0013 29.8 7.9 19 48-66 149-167 (476)
49 PRK06027 purU formyltetrahydro 55.2 88 0.0019 26.8 8.3 19 141-159 161-179 (286)
50 PRK15179 Vi polysaccharide bio 55.1 65 0.0014 31.3 8.2 103 42-158 278-413 (694)
51 cd03784 GT1_Gtf_like This fami 54.2 71 0.0015 27.4 7.7 34 46-80 2-36 (401)
52 cd03820 GT1_amsD_like This fam 53.3 18 0.00038 28.7 3.5 21 53-73 12-32 (348)
53 TIGR01755 flav_wrbA NAD(P)H:qu 52.9 16 0.00034 29.4 3.1 24 45-68 1-26 (197)
54 PRK09922 UDP-D-galactose:(gluc 51.2 79 0.0017 26.9 7.4 40 46-85 2-45 (359)
55 cd01452 VWA_26S_proteasome_sub 51.0 90 0.0019 25.3 7.3 67 45-118 108-177 (187)
56 TIGR00006 S-adenosyl-methyltra 51.0 6.8 0.00015 34.3 0.8 40 45-92 23-62 (305)
57 cd05015 SIS_PGI_1 Phosphogluco 49.4 53 0.0012 25.3 5.6 48 43-90 18-66 (158)
58 cd04962 GT1_like_5 This family 49.1 97 0.0021 25.6 7.5 28 52-80 10-37 (371)
59 PF13579 Glyco_trans_4_4: Glyc 48.9 27 0.00059 24.7 3.7 17 141-157 69-85 (160)
60 PF13439 Glyco_transf_4: Glyco 48.9 64 0.0014 23.2 5.7 28 51-79 9-36 (177)
61 PF00342 PGI: Phosphoglucose i 48.3 57 0.0012 30.3 6.4 51 41-91 92-143 (486)
62 PF06925 MGDG_synth: Monogalac 47.8 14 0.00031 28.5 2.1 17 139-155 83-99 (169)
63 cd00133 PTS_IIB PTS_IIB: subun 47.0 18 0.00038 23.5 2.2 22 46-67 1-23 (84)
64 KOG2782 Putative SAM dependent 46.9 9.2 0.0002 32.8 0.9 17 47-63 48-64 (303)
65 cd01635 Glycosyltransferase_GT 46.5 50 0.0011 24.6 4.9 18 52-69 11-28 (229)
66 PRK00050 16S rRNA m(4)C1402 me 46.0 11 0.00023 32.9 1.2 19 46-64 23-41 (296)
67 KOG2941 Beta-1,4-mannosyltrans 45.9 1.6E+02 0.0035 27.0 8.6 99 43-156 12-115 (444)
68 PRK10834 vancomycin high tempe 45.2 43 0.00094 28.4 4.7 39 45-83 45-90 (239)
69 TIGR03590 PseG pseudaminic aci 44.3 1.9E+02 0.0041 24.2 8.8 78 54-156 14-91 (279)
70 PRK06568 F0F1 ATP synthase sub 44.0 25 0.00055 27.8 3.0 19 1-19 1-19 (154)
71 PRK06242 flavodoxin; Provision 43.6 24 0.00051 26.3 2.7 22 45-66 1-24 (150)
72 PRK03767 NAD(P)H:quinone oxido 42.4 28 0.00061 27.8 3.1 23 46-68 3-27 (200)
73 cd03817 GT1_UGDG_like This fam 42.3 68 0.0015 25.7 5.4 28 53-82 13-40 (374)
74 PRK10307 putative glycosyl tra 42.1 1.3E+02 0.0028 26.0 7.4 13 143-155 104-116 (412)
75 TIGR03025 EPS_sugtrans exopoly 42.1 1.1E+02 0.0024 27.4 7.1 31 48-78 128-158 (445)
76 KOG1753 40S ribosomal protein 41.8 17 0.00038 28.4 1.7 66 42-118 62-127 (145)
77 PF06716 DUF1201: Protein of u 40.6 63 0.0014 21.0 3.9 33 7-39 12-44 (54)
78 PF03853 YjeF_N: YjeF-related 40.4 1.2E+02 0.0025 23.7 6.3 51 42-92 23-73 (169)
79 PRK13011 formyltetrahydrofolat 40.4 2.1E+02 0.0046 24.5 8.4 20 140-159 160-179 (286)
80 PLN02275 transferase, transfer 39.6 2.1E+02 0.0045 24.6 8.3 94 48-155 9-110 (371)
81 cd03814 GT1_like_2 This family 38.6 69 0.0015 25.8 4.9 27 53-80 13-39 (364)
82 PF03358 FMN_red: NADPH-depend 38.2 42 0.0009 24.9 3.3 23 45-67 1-26 (152)
83 cd03798 GT1_wlbH_like This fam 38.0 91 0.002 24.7 5.4 30 52-82 12-41 (377)
84 smart00493 TOPRIM topoisomeras 37.1 1.1E+02 0.0023 19.9 4.9 42 51-95 26-69 (76)
85 COG4814 Uncharacterized protei 36.8 55 0.0012 28.6 4.1 28 43-70 44-71 (288)
86 PRK13010 purU formyltetrahydro 36.7 2.8E+02 0.006 23.9 9.5 40 42-83 91-131 (289)
87 cd03821 GT1_Bme6_like This fam 36.3 87 0.0019 25.1 5.1 22 52-73 12-33 (375)
88 PF00551 Formyl_trans_N: Formy 35.0 2.2E+02 0.0048 22.2 7.5 21 139-159 73-93 (181)
89 PRK09548 PTS system ascorbate- 34.9 1.1E+02 0.0025 29.4 6.3 43 42-87 504-548 (602)
90 TIGR03023 WcaJ_sugtrans Undeca 33.9 1.8E+02 0.0039 26.0 7.2 29 46-74 129-157 (451)
91 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.8 59 0.0013 23.2 3.4 29 43-71 45-73 (126)
92 cd05014 SIS_Kpsf KpsF-like pro 33.7 58 0.0013 23.3 3.4 40 44-85 47-86 (128)
93 cd08190 HOT Hydroxyacid-oxoaci 33.6 3.5E+02 0.0076 24.2 9.4 27 132-158 67-93 (414)
94 cd08193 HVD 5-hydroxyvalerate 33.1 3.2E+02 0.007 23.9 8.5 28 131-158 69-96 (376)
95 KOG1387 Glycosyltransferase [C 32.1 4.1E+02 0.0089 24.5 11.1 37 124-160 129-166 (465)
96 PF02302 PTS_IIB: PTS system, 31.3 70 0.0015 21.6 3.3 28 46-73 1-30 (90)
97 PF05399 EVI2A: Ectropic viral 31.0 61 0.0013 27.4 3.3 21 2-22 126-146 (227)
98 PRK10125 putative glycosyl tra 30.0 34 0.00074 30.4 1.9 40 45-85 4-43 (405)
99 PRK09267 flavodoxin FldA; Vali 29.8 61 0.0013 24.8 3.1 22 45-66 2-24 (169)
100 TIGR00655 PurU formyltetrahydr 29.7 3.6E+02 0.0078 23.1 9.5 92 42-159 82-174 (280)
101 TIGR00639 PurN phosphoribosylg 29.7 3E+02 0.0064 22.1 8.7 44 45-90 1-46 (190)
102 PF14914 LRRC37AB_C: LRRC37A/B 29.2 63 0.0014 25.7 3.0 36 56-91 58-103 (154)
103 cd08183 Fe-ADH2 Iron-containin 29.0 3.9E+02 0.0085 23.3 9.9 26 133-158 63-88 (374)
104 PRK15454 ethanol dehydrogenase 28.5 4.3E+02 0.0092 23.6 8.7 26 133-158 94-119 (395)
105 TIGR03172 probable selenium-de 27.7 77 0.0017 26.6 3.5 23 48-70 2-24 (232)
106 PF00465 Fe-ADH: Iron-containi 27.4 2.8E+02 0.006 24.1 7.1 28 131-158 64-91 (366)
107 PF02698 DUF218: DUF218 domain 27.4 2.6E+02 0.0056 20.7 8.1 92 45-154 2-107 (155)
108 PF13289 SIR2_2: SIR2-like dom 26.1 1.1E+02 0.0024 22.0 3.8 39 46-84 87-127 (143)
109 PF13177 DNA_pol3_delta2: DNA 26.1 3E+02 0.0066 21.1 8.2 66 49-118 71-143 (162)
110 PF11119 DUF2633: Protein of u 26.0 93 0.002 21.0 3.0 20 13-32 12-31 (59)
111 cd08551 Fe-ADH iron-containing 26.0 4.4E+02 0.0095 22.9 8.8 25 134-158 69-93 (370)
112 PF13727 CoA_binding_3: CoA-bi 25.9 1.1E+02 0.0025 22.5 3.9 27 49-75 81-107 (175)
113 PF01903 CbiX: CbiX; InterPro 25.9 34 0.00074 24.0 1.0 30 49-79 59-89 (105)
114 PRK10310 PTS system galactitol 25.9 67 0.0014 22.8 2.5 17 45-61 3-19 (94)
115 cd05568 PTS_IIB_bgl_like PTS_I 25.9 66 0.0014 21.3 2.4 18 46-63 2-19 (85)
116 COG0275 Predicted S-adenosylme 25.5 1.7E+02 0.0038 25.9 5.4 44 44-94 25-68 (314)
117 cd03809 GT1_mtfB_like This fam 25.2 2.4E+02 0.0052 22.7 6.0 32 53-85 14-45 (365)
118 PRK13195 pyrrolidone-carboxyla 24.9 50 0.0011 27.7 1.9 17 141-157 57-73 (222)
119 cd06559 Endonuclease_V Endonuc 24.9 1.6E+02 0.0035 24.2 4.9 46 112-159 59-107 (208)
120 cd08192 Fe-ADH7 Iron-containin 24.4 4.7E+02 0.01 22.7 8.5 26 133-158 69-94 (370)
121 cd08186 Fe-ADH8 Iron-containin 24.0 5E+02 0.011 22.8 9.6 28 131-158 70-97 (383)
122 PRK09590 celB cellobiose phosp 23.9 82 0.0018 23.1 2.7 22 46-67 3-24 (104)
123 TIGR01369 CPSaseII_lrg carbamo 23.8 1.7E+02 0.0037 29.7 5.7 19 139-157 75-94 (1050)
124 PF09314 DUF1972: Domain of un 23.8 3.9E+02 0.0085 21.6 8.2 85 54-156 17-103 (185)
125 TIGR00853 pts-lac PTS system, 23.6 91 0.002 22.3 2.8 23 44-66 3-25 (95)
126 TIGR03472 HpnI hopanoid biosyn 23.1 5E+02 0.011 22.5 11.0 47 45-94 43-92 (373)
127 PF01488 Shikimate_DH: Shikima 23.0 3.2E+02 0.0069 20.2 8.1 43 46-96 13-55 (135)
128 PRK13937 phosphoheptose isomer 23.0 1.1E+02 0.0023 24.2 3.4 37 45-82 107-143 (188)
129 PRK13938 phosphoheptose isomer 22.8 1E+02 0.0022 25.0 3.2 39 44-83 113-151 (196)
130 cd00842 MPP_ASMase acid sphing 22.6 98 0.0021 25.8 3.3 41 114-155 38-78 (296)
131 cd03795 GT1_like_4 This family 22.4 2E+02 0.0043 23.4 5.0 27 53-80 13-39 (357)
132 cd08191 HHD 6-hydroxyhexanoate 22.3 5.4E+02 0.012 22.6 9.3 23 136-158 70-92 (386)
133 cd01448 TST_Repeat_1 Thiosulfa 22.3 1.8E+02 0.0039 20.6 4.2 26 43-68 78-104 (122)
134 PLN02605 monogalactosyldiacylg 22.2 60 0.0013 28.1 2.0 17 139-155 94-110 (382)
135 COG2268 Uncharacterized protei 22.0 1.5E+02 0.0033 28.2 4.7 23 4-26 8-30 (548)
136 PF10669 Phage_Gp23: Protein g 21.7 1.4E+02 0.0029 22.4 3.4 22 7-28 18-39 (121)
137 TIGR00441 gmhA phosphoheptose 21.6 1.2E+02 0.0025 23.2 3.3 39 44-83 79-117 (154)
138 PRK05294 carB carbamoyl phosph 21.4 1.5E+02 0.0032 30.1 4.7 21 140-160 77-98 (1066)
139 PRK06756 flavodoxin; Provision 21.1 2.7E+02 0.0059 20.6 5.2 37 48-84 52-94 (148)
140 PRK10124 putative UDP-glucose 21.1 3.5E+02 0.0075 24.7 6.7 27 48-74 146-172 (463)
141 TIGR02782 TrbB_P P-type conjug 21.0 5.2E+02 0.011 22.1 7.4 18 134-151 193-210 (299)
142 cd03792 GT1_Trehalose_phosphor 20.9 3.7E+02 0.0081 22.7 6.5 28 52-79 10-37 (372)
143 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.7 2E+02 0.0044 20.9 4.4 37 44-82 62-98 (153)
144 TIGR01753 flav_short flavodoxi 20.6 2E+02 0.0043 20.6 4.2 37 48-84 48-91 (140)
145 PLN03159 cation/H(+) antiporte 20.2 6.1E+02 0.013 25.2 8.6 35 40-74 454-488 (832)
No 1
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=100.00 E-value=2.7e-48 Score=312.70 Aligned_cols=140 Identities=43% Similarity=0.577 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHh
Q 030992 17 TSVAIFLIRLLHVLYLTGKSRRLKSPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDS 96 (168)
Q Consensus 17 ~~~~~l~~Rl~~vl~~~~~~~~~~~~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~ 96 (168)
.++.++.+|+.++..+..++. +++++.+++|||||||||+||++|+++++ +.|+||+|+.+++|++|++|++.||.+
T Consensus 13 ~~~~li~~~v~~~~~~~~k~~--Pk~~s~~~lVvlGSGGHT~EMlrLl~~l~-~~y~~r~yI~a~tD~mS~~k~~~F~~~ 89 (211)
T KOG3339|consen 13 YVIVLIALLVFRHTQRSTKKD--PKDKSLSTLVVLGSGGHTGEMLRLLEALQ-DLYSPRSYIAADTDEMSEQKARSFELS 89 (211)
T ss_pred HHHHHHHHHHHHHHHhccCCC--CcCCcceEEEEEcCCCcHHHHHHHHHHHH-hhcCceEEEEecCchhhHHHHHhhhcc
Confidence 444555666656554443333 33578999999999999999999999996 889999999999999999999999987
Q ss_pred hhhhhhccCCceEEEEeccccccCcchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheeeeec
Q 030992 97 LLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSLVIL 165 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~ipRaReV~Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~~~~ 165 (168)
... .+..++.+||+|||||||+||+||+++++++|+++++|.|||+|+|||||+++|+|+.|.
T Consensus 90 ~a~------~~a~~~~ipRsReVgQS~ltSv~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~ 152 (211)
T KOG3339|consen 90 LAH------CKAKNYEIPRSREVGQSWLTSVFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAY 152 (211)
T ss_pred ccc------cchhheecchhhhhhhhhhhhHHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHH
Confidence 643 235567799999999999999999999999999999999999999999999999999874
No 2
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=100.00 E-value=7.5e-37 Score=243.82 Aligned_cols=112 Identities=42% Similarity=0.609 Sum_probs=104.9
Q ss_pred EEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHH
Q 030992 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTS 126 (168)
Q Consensus 47 ilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tS 126 (168)
+|+|+||||||+||++|++.++.+.+++++|+++++|..|.+|++++|++... ..+++.+||+|+|+|||+++
T Consensus 1 Il~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~-------~~~~~~~~r~r~v~q~~~~~ 73 (170)
T PF08660_consen 1 ILVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSK-------RHKILEIPRAREVGQSYLTS 73 (170)
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccc-------cceeeccceEEEechhhHhh
Confidence 58999999999999999999988899999999999999999999999987532 23789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheeeeec
Q 030992 127 VWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSLVIL 165 (168)
Q Consensus 127 i~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~~~~ 165 (168)
++++++++++|+.+++|+|||+|||||||+|+|+|+++.
T Consensus 74 ~~~~l~~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~ 112 (170)
T PF08660_consen 74 IFTTLRAFLQSLRILRRERPDVIISNGPGTCVPVCLAAK 112 (170)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHH
Confidence 999999999999999999999999999999999999874
No 3
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=1.5e-06 Score=76.75 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=78.6
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcc---
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS--- 122 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs--- 122 (168)
-++..-|+|||..==+.+.+.+..+-+. ...+.+.+|.++. ..... ....++.|+-.+--+++
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~e~--------~l~~~-----~~~~~~~I~~~~~~~~~~~~ 68 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGDGLEA--------FLVKQ-----YGIEFELIPSGGLRRKGSLK 68 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEeccccccee--------eeccc-----cCceEEEEecccccccCcHH
Confidence 4567789999999999999999966666 4555567777733 22111 12344444433333333
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheeeeecc
Q 030992 123 YVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSLVILQ 166 (168)
Q Consensus 123 ~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~~~~~ 166 (168)
.+.++|..+++...+..++.+.|||+|+++|.-+++|..++|..
T Consensus 69 ~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~ 112 (357)
T COG0707 69 LLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKL 112 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHh
Confidence 35677889999999999999999999999999999999998864
No 4
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.26 E-value=2.3e-06 Score=74.74 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=72.5
Q ss_pred EEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccc---cccCcchhHH
Q 030992 50 VLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRS---REVGQSYVTS 126 (168)
Q Consensus 50 vLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRa---ReV~Qs~~tS 126 (168)
--|+|||..=-+.+.+.+..+ .+..+++++.+..+ .++..+ ..+.+..++.. |...-..+.+
T Consensus 8 ~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~e--------~~l~~~-----~g~~~~~~~~~~l~~~~~~~~~~~ 72 (352)
T PRK12446 8 GGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGIE--------KTIIEK-----ENIPYYSISSGKLRRYFDLKNIKD 72 (352)
T ss_pred cCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCccc--------cccCcc-----cCCcEEEEeccCcCCCchHHHHHH
Confidence 347999999999999999843 34566666665552 222111 12445555421 2111123678
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheeeeecc
Q 030992 127 VWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSLVILQ 166 (168)
Q Consensus 127 i~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~~~~~ 166 (168)
++..+++++++..++.++|||+|+++|.-+++|++++|..
T Consensus 73 ~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~ 112 (352)
T PRK12446 73 PFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWL 112 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHH
Confidence 8889999999999999999999999999999999998753
No 5
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.79 E-value=0.00012 Score=62.52 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=63.6
Q ss_pred cEEEEEE-cCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcch
Q 030992 45 LSTLIVL-GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (168)
Q Consensus 45 ~kilvvL-GSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~ 123 (168)
+|++++. |+|||...++.|.+.+....++ ..+++..+....+ ..++ ..+.++.++-.+..+.+-
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~e--v~vv~~~~~~~~~---~~~~----------~g~~~~~~~~~~~~~~~~ 66 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWE--VLYLGTARGMEAR---LVPK----------AGIEFHFIPSGGLRRKGS 66 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCE--EEEEECCCchhhh---cccc----------CCCcEEEEeccCcCCCCh
Confidence 4777774 7999999999999988855454 4555555432111 1111 124455555444333332
Q ss_pred ---hHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheee
Q 030992 124 ---VTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSL 162 (168)
Q Consensus 124 ---~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~ 162 (168)
+-..++.++++.....++.+++||+|+|.|...+++.++
T Consensus 67 ~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~ 108 (357)
T PRK00726 67 LANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGL 108 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHH
Confidence 223455566666666777788999999999776766444
No 6
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.47 E-value=0.00053 Score=57.72 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=60.1
Q ss_pred EEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccc---cccCcchhH
Q 030992 49 IVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRS---REVGQSYVT 125 (168)
Q Consensus 49 vvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRa---ReV~Qs~~t 125 (168)
.-.|+|||+.....+.+.|..+-++ .++++.++.... ...+. .++.++.+|-. ++-.-.++.
T Consensus 5 ~~~~~gG~~~~~~~la~~l~~~G~e--v~v~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 69 (350)
T cd03785 5 AGGGTGGHIFPALALAEELRERGAE--VLFLGTKRGLEA---RLVPK----------AGIPLHTIPVGGLRRKGSLKKLK 69 (350)
T ss_pred EecCchhhhhHHHHHHHHHHhCCCE--EEEEECCCcchh---hcccc----------cCCceEEEEecCcCCCChHHHHH
Confidence 4568999999999999999865554 345554443321 11111 12334444422 222223445
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhhee
Q 030992 126 SVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSS 161 (168)
Q Consensus 126 Si~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~ 161 (168)
+++..++.+.....++.+++||+|+++|+..+++..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~ 105 (350)
T cd03785 70 APFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVG 105 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHH
Confidence 566667777777788889999999999976665543
No 7
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.67 E-value=0.0093 Score=50.12 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=55.9
Q ss_pred EEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcch---h
Q 030992 48 LIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY---V 124 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~---~ 124 (168)
++..|.|||..--..|.+.+....++ . .+++..+.... .+.++ ....+..+|..+..+-+. +
T Consensus 5 ~~~g~~~g~~~~~~~La~~L~~~g~e-V-~vv~~~~~~~~----~~~~~---------~g~~~~~i~~~~~~~~~~~~~l 69 (348)
T TIGR01133 5 LAAGGTGGHIFPALAVAEELIKRGVE-V-LWLGTKRGLEK----RLVPK---------AGIEFYFIPVGGLRRKGSFRLI 69 (348)
T ss_pred EEeCccHHHHhHHHHHHHHHHhCCCE-E-EEEeCCCcchh----ccccc---------CCCceEEEeccCcCCCChHHHH
Confidence 56778999998666788888855544 3 34443222111 11010 124455555544222221 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhhee
Q 030992 125 TSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSS 161 (168)
Q Consensus 125 tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~ 161 (168)
..+++.+..+.....++.+++||+|+++++..+++..
T Consensus 70 ~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~ 106 (348)
T TIGR01133 70 KTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAG 106 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHH
Confidence 2234455555556667788999999999876655543
No 8
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=95.09 E-value=0.16 Score=43.19 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=49.9
Q ss_pred EEEEcCc-hhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHH
Q 030992 48 LIVLGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTS 126 (168)
Q Consensus 48 lvvLGSG-GHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tS 126 (168)
..+.|.| ||..--+.+.+.+.. .++ ..|+ ++++ .. +.. ++.....- .......+ ..++. ++ ..+.+
T Consensus 4 ~~~~g~G~GH~~r~~ala~~L~~-g~e-v~~~-~~~~--~~-~~~--~~~~~~~~-~~~p~~~~-~~~~~-~~--~~~~~ 70 (321)
T TIGR00661 4 YSVCGEGFGHTTRSVAIGEALKN-DYE-VSYI-ASGR--SK-NYI--SKYGFKVF-ETFPGIKL-KGEDG-KV--NIVKT 70 (321)
T ss_pred EEEeccCccHHHHHHHHHHHHhC-CCe-EEEE-EcCC--HH-Hhh--hhhcCcce-eccCCceE-eecCC-cC--cHHHH
Confidence 4589999 999999999999884 444 4444 4444 22 111 11100000 00000011 11222 11 22222
Q ss_pred HH---HH-HHHHHHHHHHHhhcCCcEEEeCCCcch
Q 030992 127 VW---TT-LLATTHALWLMVKIRPQVVMNLSLARV 157 (168)
Q Consensus 127 i~---tt-l~s~~~sl~il~r~rPdviL~~G~~~~ 157 (168)
.+ .+ ...+.....++.+.+||+|++.|.=.+
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~ 105 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIREYNPDLIISDFEYST 105 (321)
T ss_pred HHhhccccHHHHHHHHHHHHhcCCCEEEECCchHH
Confidence 22 11 124445667888999999999987644
No 9
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=94.88 E-value=0.027 Score=49.72 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=57.8
Q ss_pred EEEE-EEcCchhHHHHHHhHHhcccCCCCceEEEEeCC-chhhHHHHHHHHHhhhhhhhccCCceEEEEec--cccccCc
Q 030992 46 STLI-VLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT-DNMSLQKARVFEDSLLHKKVIKGSSAQFMQIY--RSREVGQ 121 (168)
Q Consensus 46 kilv-vLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~t-D~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ip--RaReV~Q 121 (168)
|+++ --|.|||..== .+.+.+... .+...+++.+ +.+ |+.... ..+.+..++ -=+|+
T Consensus 7 ki~i~aGgtsGhi~pa-al~~~l~~~--~~~~~~~g~gg~~m--------~~~g~~------~~~~~~~l~v~G~~~~-- 67 (385)
T TIGR00215 7 TIALVAGEASGDILGA-GLRQQLKEH--YPNARFIGVAGPRM--------AAEGCE------VLYSMEELSVMGLREV-- 67 (385)
T ss_pred eEEEEeCCccHHHHHH-HHHHHHHhc--CCCcEEEEEccHHH--------HhCcCc------cccChHHhhhccHHHH--
Confidence 5655 44699998866 777777733 2334444444 333 221100 001111111 11122
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheee
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSL 162 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~ 162 (168)
+..++..++.+..+..++.++|||+|+++| +.++|+.+
T Consensus 68 --l~~~~~~~~~~~~~~~~l~~~kPd~vi~~g-~~~~~~~~ 105 (385)
T TIGR00215 68 --LGRLGRLLKIRKEVVQLAKQAKPDLLVGID-APDFNLTK 105 (385)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCEEEEeC-CCCccHHH
Confidence 556777778888888999999999999999 79999766
No 10
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=94.54 E-value=0.17 Score=40.65 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=53.2
Q ss_pred EEEEEEcC-chhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchh
Q 030992 46 STLIVLGS-GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (168)
Q Consensus 46 kilvvLGS-GGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~ 124 (168)
|++++..+ ||+..-+.++.+.+....++ .+++....+... ..+. .+..+..+|..+. .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~-----~~~~----------~~~~~~~~~~~~~-~---- 59 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYE-VHVVAPPGDELE-----ELEA----------LGVKVIPIPLDRR-G---- 59 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCe-eEEEecCCCccc-----cccc----------CCceEEecccccc-c----
Confidence 46666666 89999999999999645454 334443333221 1111 2345566666553 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcch
Q 030992 125 TSVWTTLLATTHALWLMVKIRPQVVMNLSLARV 157 (168)
Q Consensus 125 tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~ 157 (168)
.+.+..+..+..-..++.+.+||+|++.+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~ 92 (359)
T cd03808 60 INPFKDLKALLRLYRLLRKERPDIVHTHTPKPG 92 (359)
T ss_pred cChHhHHHHHHHHHHHHHhcCCCEEEEccccch
Confidence 122344444445556667889999999876443
No 11
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=92.78 E-value=1.1 Score=32.73 Aligned_cols=83 Identities=13% Similarity=0.152 Sum_probs=45.9
Q ss_pred EEEEEc-CchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhH
Q 030992 47 TLIVLG-SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVT 125 (168)
Q Consensus 47 ilvvLG-SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~t 125 (168)
++++.. ..+| ++++.+.+....|+ .+++....|.. +.+.. .+..++.++..|+-
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~-V~ii~~~~~~~------~~~~~---------~~i~~~~~~~~~k~------ 56 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYD-VHIITPRNDYE------KYEII---------EGIKVIRLPSPRKS------ 56 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCE-EEEEEcCCCch------hhhHh---------CCeEEEEecCCCCc------
Confidence 444444 3334 55667777755555 44444433331 11111 24667777644431
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCCCcc
Q 030992 126 SVWTTLLATTHALWLMVKIRPQVVMNLSLAR 156 (168)
Q Consensus 126 Si~ttl~s~~~sl~il~r~rPdviL~~G~~~ 156 (168)
++..+. ...-..++.+++||+|.|.++..
T Consensus 57 -~~~~~~-~~~l~k~ik~~~~DvIh~h~~~~ 85 (139)
T PF13477_consen 57 -PLNYIK-YFRLRKIIKKEKPDVIHCHTPSP 85 (139)
T ss_pred -cHHHHH-HHHHHHHhccCCCCEEEEecCCh
Confidence 234443 33445677889999999999876
No 12
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=91.77 E-value=3.5 Score=37.64 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCcEE-EEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCc
Q 030992 43 QPLST-LIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ 121 (168)
Q Consensus 43 ~~~ki-lvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Q 121 (168)
+|.|+ ..++|++|...++.|||+.+...+ ...|+.-+.++...+++... ...+... ......+++.+.|+..|.-
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLYhpr--N~y~IHlDkKS~~~er~~l~-~~v~~~~-~~~~~~NV~vl~k~~~V~W 151 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALYHPR--NQYVVHLDLESPAEERLELA-SRVENDP-MFSKVGNVYMITKANLVTY 151 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhcCCC--ceEEEEecCCCChHHHHHHH-HHhhccc-hhhccCcEEEEecceeecc
Confidence 45666 578889999999999999986332 13455544433333232211 1110000 0001123444455554422
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCC
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRP 146 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rP 146 (168)
. =+|.+.+.++|+..+++..+
T Consensus 152 G----G~S~V~AtL~~m~~LL~~~~ 172 (421)
T PLN03183 152 R----GPTMVANTLHACAILLKRSK 172 (421)
T ss_pred C----ChHHHHHHHHHHHHHHhhCC
Confidence 2 25888889999988887654
No 13
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=91.27 E-value=1.5 Score=36.33 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=48.5
Q ss_pred EEEEE---cCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcch
Q 030992 47 TLIVL---GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (168)
Q Consensus 47 ilvvL---GSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~ 123 (168)
++++. +.||...-+.++.+.+..+.|+ .+++....+.... ....+. .+..++.++.... .
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~-v~~i~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~---~- 64 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQ-FDFLVTSKEEGDY--DDEIEK----------LGGKIYYIPARKK---N- 64 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceE-EEEEEeCCCCcch--HHHHHH----------cCCeEEEecCCCc---c-
Confidence 44444 4599999999999999855665 5555544333211 111111 1233444443222 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 124 VTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 124 ~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
.+..+..+. .++.+.+||+|.++++.....
T Consensus 65 ---~~~~~~~~~---~~~~~~~~Dvv~~~~~~~~~~ 94 (358)
T cd03812 65 ---PLKYFKKLY---KLIKKNKYDIVHVHGSSASGF 94 (358)
T ss_pred ---HHHHHHHHH---HHHhcCCCCEEEEeCcchhHH
Confidence 122222222 255678999999998864333
No 14
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=91.24 E-value=0.71 Score=38.07 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=48.0
Q ss_pred EEEEE---cCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcch
Q 030992 47 TLIVL---GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (168)
Q Consensus 47 ilvvL---GSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~ 123 (168)
++++. |.|||-.-...+.+.|....++ .+++...++.... .... ......++..+.
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~-v~v~~~~~~~~~~-----~~~~----------~~~~~~~~~~~~----- 60 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQ-VAIISLTGESEVK-----PPID----------ATIILNLNMSKN----- 60 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCce-EEEEEEeCCCCcc-----chhh----------ccceEEeccccc-----
Confidence 45554 4599999999999999854444 3344333332211 0000 011123333222
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 124 VTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 124 ~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
.+..++++.....++.+.+||+|.++++....
T Consensus 61 ---~~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~~ 92 (360)
T cd04951 61 ---PLSFLLALWKLRKILRQFKPDVVHAHMFHANI 92 (360)
T ss_pred ---chhhHHHHHHHHHHHHhcCCCEEEEcccchHH
Confidence 12334444445566778899999999876543
No 15
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=91.03 E-value=1.2 Score=37.87 Aligned_cols=87 Identities=18% Similarity=0.332 Sum_probs=49.0
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhH
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVT 125 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~t 125 (168)
++.--++.||...-++.|.+.++.+.|.. .+++-+|.... +++... .+..++.+++... ..
T Consensus 6 ~ii~~~~~GG~e~~~~~l~~~l~~~~~~~--~v~~~~~~~~~------~~~~~~------~~i~~~~~~~~~~--~~--- 66 (374)
T TIGR03088 6 HVVYRFDVGGLENGLVNLINHLPADRYRH--AVVALTEVSAF------RKRIQR------PDVAFYALHKQPG--KD--- 66 (374)
T ss_pred EEeCCCCCCcHHHHHHHHHhhccccccce--EEEEcCCCChh------HHHHHh------cCceEEEeCCCCC--CC---
Confidence 34444567999999999999998666652 33333332211 111111 2355666665322 11
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCCCcc
Q 030992 126 SVWTTLLATTHALWLMVKIRPQVVMNLSLAR 156 (168)
Q Consensus 126 Si~ttl~s~~~sl~il~r~rPdviL~~G~~~ 156 (168)
+ ..+..-..++.+++||+|-+.++..
T Consensus 67 --~---~~~~~l~~~l~~~~~Divh~~~~~~ 92 (374)
T TIGR03088 67 --V---AVYPQLYRLLRQLRPDIVHTRNLAA 92 (374)
T ss_pred --h---HHHHHHHHHHHHhCCCEEEEcchhH
Confidence 1 1222333556788999999998654
No 16
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=91.01 E-value=1.2 Score=39.52 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCcEEEeC-CCcchhhee
Q 030992 123 YVTSVWTTLLATTHALWLMVKIRPQVVMNL-SLARVFFSS 161 (168)
Q Consensus 123 ~~tSi~ttl~s~~~sl~il~r~rPdviL~~-G~~~~~p~~ 161 (168)
.++...+.+.+++.++..+++.+|||++++ |.+.++|+.
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~ 124 (419)
T cd03806 85 RFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLV 124 (419)
T ss_pred ceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHH
Confidence 456778888888888888888899999988 577777764
No 17
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=90.29 E-value=0.95 Score=36.69 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=52.0
Q ss_pred chhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHHHHHHHHH
Q 030992 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLA 133 (168)
Q Consensus 54 GGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tSi~ttl~s 133 (168)
|||..-+..+.+.|....++ .+++....+..........+.+ ......++.++....-..+++..++....-
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHE-VTVITGSPNYPSGKIYKGYKRE-------EVDGVRVHRVPLPPYKKNGLLKRLLNYLSF 85 (394)
T ss_pred CCcceeHHHHHHHHHhCCce-EEEEecCCCcccccccccceEE-------ecCCeEEEEEecCCCCccchHHHHHhhhHH
Confidence 78888899998888854444 4444433322211000000000 012456667776666666665555555444
Q ss_pred HHHHHHHHh--hcCCcEEEeCCC
Q 030992 134 TTHALWLMV--KIRPQVVMNLSL 154 (168)
Q Consensus 134 ~~~sl~il~--r~rPdviL~~G~ 154 (168)
.......+. ..+||+|+++++
T Consensus 86 ~~~~~~~~~~~~~~~D~v~~~~~ 108 (394)
T cd03794 86 ALSALLALLKRRRRPDVIIATSP 108 (394)
T ss_pred HHHHHHHHHhcccCCCEEEEcCC
Confidence 445555554 778999999983
No 18
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=89.93 E-value=1.4 Score=36.35 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=51.6
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhH
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVT 125 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~t 125 (168)
+++--+++||--.-..+|.+.+...-+ ..+++....... ...+.. ...++.++....
T Consensus 2 ~~~~~~~~gG~e~~~~~l~~~L~~~g~--~v~v~~~~~~~~----~~~~~~----------~~~~~~~~~~~~------- 58 (355)
T cd03819 2 QVLPALESGGVERGTLELARALVERGH--RSLVASAGGRLV----AELEAE----------GSRHIKLPFISK------- 58 (355)
T ss_pred ccchhhccCcHHHHHHHHHHHHHHcCC--EEEEEcCCCchH----HHHHhc----------CCeEEEcccccc-------
Confidence 445557789999999999888885544 344444332221 111211 233444443221
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 126 SVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 126 Si~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
.++..++.+..-...+.+.+||+|+++++..+.+
T Consensus 59 ~~~~~~~~~~~l~~~~~~~~~dii~~~~~~~~~~ 92 (355)
T cd03819 59 NPLRILLNVARLRRLIREEKVDIVHARSRAPAWS 92 (355)
T ss_pred chhhhHHHHHHHHHHHHHcCCCEEEECCCchhHH
Confidence 1233344444455667789999999998755443
No 19
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=89.63 E-value=1.8 Score=37.98 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=60.8
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccC-CCCceEEEEeCC-c-hh--hHHHHHHHHHh-hhhhhhccCCceEEEEeccccc
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMD-RFTPRFYIAAAT-D-NM--SLQKARVFEDS-LLHKKVIKGSSAQFMQIYRSRE 118 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~-~y~~rtyvv~~t-D-~~--S~~k~~~~e~~-~~~~~~~~~~~~~~~~ipRaRe 118 (168)
+|+|+|.|+=--..=|-.+++.++.+ .+++...+++.- | .+ +. .+.++. +.-. ....+ .+...
T Consensus 1 ~ki~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~---~~~~~~~~~~~-----~~~~~-~~~~~-- 69 (365)
T TIGR03568 1 KKICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTV---NEIEKDGFDID-----EKIEI-LLDSD-- 69 (365)
T ss_pred CeEEEEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHH---HHHHHcCCCCC-----Ccccc-ccCCC--
Confidence 38999999999888899999999854 355444444422 1 11 12 122221 1000 01111 11110
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-Ccchhheeeeec
Q 030992 119 VGQSYVTSVWTTLLATTHALWLMVKIRPQVVMNLS-LARVFFSSLVIL 165 (168)
Q Consensus 119 V~Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G-~~~~~p~~~~~~ 165 (168)
-+||. .-.+...+...-.++.+++||+||+-| ..++++.+++|.
T Consensus 70 ~~~~~---~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~ 114 (365)
T TIGR03568 70 SNAGM---AKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAA 114 (365)
T ss_pred CCCCH---HHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHH
Confidence 12222 224444555666788999999999999 777777777664
No 20
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=89.47 E-value=2.6 Score=36.11 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=54.1
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccC-CCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcch
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMD-RFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~-~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~ 123 (168)
+|++++.|+=-|..=|-.+++.++.+ .++....+++.-..+ ..++++...-. .++.+ .+. . . +++.
T Consensus 1 ~~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~----~~~~~~~~~i~-----~~~~~-~~~-~-~-~~~~ 67 (365)
T TIGR00236 1 LKVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREM----LDQVLDLFHLP-----PDYDL-NIM-S-P-GQTL 67 (365)
T ss_pred CeEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHH----HHHHHHhcCCC-----CCeee-ecC-C-C-CCCH
Confidence 48999999999999999999999854 445454444443322 23333322100 01111 121 1 1 3443
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC
Q 030992 124 VTSVWTTLLATTHALWLMVKIRPQVVMNLSL 154 (168)
Q Consensus 124 ~tSi~ttl~s~~~sl~il~r~rPdviL~~G~ 154 (168)
-.+...++ ..--.++.+++||+|++-|.
T Consensus 68 ~~~~~~~~---~~l~~~l~~~~pDiv~~~gd 95 (365)
T TIGR00236 68 GEITSNML---EGLEELLLEEKPDIVLVQGD 95 (365)
T ss_pred HHHHHHHH---HHHHHHHHHcCCCEEEEeCC
Confidence 33333333 33335678899999999995
No 21
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=89.05 E-value=1.4 Score=32.27 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=60.2
Q ss_pred EEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccC-----c
Q 030992 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG-----Q 121 (168)
Q Consensus 47 ilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~-----Q 121 (168)
+++-.||+||..=++.|-+.|...-. ..-+....|.... + |+ ....+..++...+.. .
T Consensus 2 li~~~Gt~Ghv~P~lala~~L~~rGh--~V~~~~~~~~~~~--v---~~----------~Gl~~~~~~~~~~~~~~~~~~ 64 (139)
T PF03033_consen 2 LIATGGTRGHVYPFLALARALRRRGH--EVRLATPPDFRER--V---EA----------AGLEFVPIPGDSRLPRSLEPL 64 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTT---EEEEEETGGGHHH--H---HH----------TT-EEEESSSCGGGGHHHHHH
T ss_pred EEEEcCChhHHHHHHHHHHHHhccCC--eEEEeecccceec--c---cc----------cCceEEEecCCcCcCcccchh
Confidence 45778999999999999999985433 3334444443311 1 22 235676666552221 2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheee
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSL 162 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~ 162 (168)
..+..+......+......+.+.+||++...|...+.++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 105 (139)
T PF03033_consen 65 ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVII 105 (139)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEEC
T ss_pred hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHH
Confidence 23334444455566677788888899988877655555544
No 22
>PLN02949 transferase, transferring glycosyl groups
Probab=88.69 E-value=11 Score=34.34 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=59.2
Q ss_pred CcEEEEE---EcCc-hhHHHHHHhHHhcccCCCC-ceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccc
Q 030992 44 PLSTLIV---LGSG-GHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSRE 118 (168)
Q Consensus 44 ~~kilvv---LGSG-GHT~EMl~LL~~l~~~~y~-~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaRe 118 (168)
+.++.++ ||.| |=--=+......+.....+ ..+.++++.|....+-...-.+...-+ -.....++.+.|..-
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~---~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVE---LLSPPKVVHLRKRKW 109 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhccee---cCCCceEEEeccccc
Confidence 4577666 7788 5444455555555532221 234445555654322111011111000 001123443322222
Q ss_pred cCc---chhHHHHHHHHHHHHHHHHHhhcCCcEEE-eCCCcchhhe
Q 030992 119 VGQ---SYVTSVWTTLLATTHALWLMVKIRPQVVM-NLSLARVFFS 160 (168)
Q Consensus 119 V~Q---s~~tSi~ttl~s~~~sl~il~r~rPdviL-~~G~~~~~p~ 160 (168)
+-- +.+|-+...+.+++.++..+++..||+.+ ++|.+.++|+
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~pl 155 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPL 155 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHHH
Confidence 221 23677788888888888888888898777 5676777776
No 23
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=87.37 E-value=4.8 Score=32.32 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=48.1
Q ss_pred EEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHH
Q 030992 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTS 126 (168)
Q Consensus 47 ilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tS 126 (168)
+.--+++||+-.-+..|.+.+....+.. . ++..++.... .+.... .+..+..++....
T Consensus 5 i~~~~~~gG~~~~~~~l~~~l~~~~~~v-~-~~~~~~~~~~------~~~~~~------~~i~v~~~~~~~~-------- 62 (365)
T cd03807 5 VITGLDVGGAERMLVRLLKGLDRDRFEH-V-VISLTDRGEL------GEELEE------AGVPVYCLGKRPG-------- 62 (365)
T ss_pred EEeeccCccHHHHHHHHHHHhhhccceE-E-EEecCcchhh------hHHHHh------cCCeEEEEecccc--------
Confidence 4445678999999999999996555542 2 2322222211 111111 1234444443322
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 127 VWTTLLATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 127 i~ttl~s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
....+.+..-..++.+.+||+|.+......+
T Consensus 63 -~~~~~~~~~~~~~~~~~~~div~~~~~~~~~ 93 (365)
T cd03807 63 -RPDPGALLRLYKLIRRLRPDVVHTWMYHADL 93 (365)
T ss_pred -cccHHHHHHHHHHHHhhCCCEEEeccccccH
Confidence 1222333344456668899999998766443
No 24
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=87.04 E-value=2.2 Score=36.66 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCcEEEeCCCcchhhee
Q 030992 135 THALWLMVKIRPQVVMNLSLARVFFSS 161 (168)
Q Consensus 135 ~~sl~il~r~rPdviL~~G~~~~~p~~ 161 (168)
.....++.+++||+|+|++|..++|..
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~~~~ 120 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAVPEL 120 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHHHHH
Confidence 345566778899999999998776643
No 25
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=86.51 E-value=1.8 Score=38.49 Aligned_cols=91 Identities=9% Similarity=0.002 Sum_probs=56.4
Q ss_pred cCchhHHHHH--HhHHhcccCCCCceEE---EEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcc---h
Q 030992 52 GSGGHTAEMM--NLLSVLQMDRFTPRFY---IAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS---Y 123 (168)
Q Consensus 52 GSGGHT~EMl--~LL~~l~~~~y~~rty---vv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs---~ 123 (168)
=|.||-+-.. .+.+.+....-..... ++++++.. |++.-... + .+..+|-.==-+++ .
T Consensus 3 ~snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~--------e~~~ip~~----g--~~~~~~sgg~~~~~~~~~ 68 (396)
T TIGR03492 3 LSNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY--------QNLGIPII----G--PTKELPSGGFSYQSLRGL 68 (396)
T ss_pred CCCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH--------hhCCCcee----C--CCCCCCCCCccCCCHHHH
Confidence 4789987764 4455565321234667 78888777 33221110 1 23334421111233 3
Q ss_pred hHHHHH-HHHHHHHHHHHHhhc--CCcEEEeCCCcc
Q 030992 124 VTSVWT-TLLATTHALWLMVKI--RPQVVMNLSLAR 156 (168)
Q Consensus 124 ~tSi~t-tl~s~~~sl~il~r~--rPdviL~~G~~~ 156 (168)
+..++. .+..++.++.++.+. |||+|+++|-=+
T Consensus 69 ~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v 104 (396)
T TIGR03492 69 LRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV 104 (396)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH
Confidence 557778 888899999999999 999999999655
No 26
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=84.78 E-value=8.5 Score=32.40 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=49.2
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccC-CCCceEEEEeCCchhhHHHHHHH-HHhhhhhhhccCCceEEEEeccccccCcch
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMD-RFTPRFYIAAATDNMSLQKARVF-EDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~-~y~~rtyvv~~tD~~S~~k~~~~-e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~ 123 (168)
|+++|.|+=--..=|--+++.+..+ .++....++ +...+..--... +.... ..+.+ .+...-. .|+
T Consensus 1 ~i~~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~t--g~h~~~~~~~~~~~~~~~-------~~~~~-~l~~~~~-~~~- 68 (363)
T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVT--GQHYDMEMGVTFFEILFI-------IKPDY-DLLLGSD-SQS- 68 (363)
T ss_pred CEEEEEecCHHHHHHHHHHHHHhcCCCCCEEEEEe--CCCCChhhhHHHHHhhCC-------CCCCE-EEecCCC-CCC-
Confidence 5889999988888888888888854 344333333 322222110111 11110 11122 2222211 122
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC
Q 030992 124 VTSVWTTLLATTHALWLMVKIRPQVVMNLSL 154 (168)
Q Consensus 124 ~tSi~ttl~s~~~sl~il~r~rPdviL~~G~ 154 (168)
....+..........+.+++||+|++.|.
T Consensus 69 --~~~~~~~~~~~l~~~l~~~~pDvV~~~g~ 97 (363)
T cd03786 69 --LGAQTAGLLIGLEAVLLEEKPDLVLVLGD 97 (363)
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 12233333445556677889999999985
No 27
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=84.11 E-value=1.4 Score=37.71 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC
Q 030992 124 VTSVWTTLLATTHALWLMVKIRPQVVMNLSL 154 (168)
Q Consensus 124 ~tSi~ttl~s~~~sl~il~r~rPdviL~~G~ 154 (168)
+..++..+.++.....++.+.|||+|++.|.
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~~kPdivi~~~~ 94 (380)
T PRK00025 64 LPRLPRLLKIRRRLKRRLLAEPPDVFIGIDA 94 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4556677777778888889999999999983
No 28
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=81.60 E-value=36 Score=29.79 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=29.4
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchh
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~ 85 (168)
.+-+=..|.|++.-...|++.+..+.......++..|.+.
T Consensus 52 ~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~ 91 (425)
T PRK05749 52 LIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTG 91 (425)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccH
Confidence 3889999999999999999998755444455555544333
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=79.58 E-value=22 Score=29.50 Aligned_cols=87 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred cEEE-EEEcCc-hhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCc-
Q 030992 45 LSTL-IVLGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ- 121 (168)
Q Consensus 45 ~kil-vvLGSG-GHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Q- 121 (168)
+|++ .+.|+| ||.+-.+.|.+.| + .+...++..++.. ..++++ +.+..+|.-..+..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L---r-g~~v~~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~ 60 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL---R-GHEVTFITSGPAP-----EFLKPR-----------FPVREIPGLGPIQEN 60 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH---c-cCceEEEEcCCcH-----HHhccc-----------cCEEEccCceEeccC
Q ss_pred ---chhHHHHHHH-------HHHHHHHHHHhhcCCcEEEe
Q 030992 122 ---SYVTSVWTTL-------LATTHALWLMVKIRPQVVMN 151 (168)
Q Consensus 122 ---s~~tSi~ttl-------~s~~~sl~il~r~rPdviL~ 151 (168)
.+..++.... ...-.-...+.+.+||+||+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIs 100 (318)
T PF13528_consen 61 GRLDRWKTVRNNIRWLARLARRIRREIRWLREFRPDLVIS 100 (318)
T ss_pred CccchHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEE
No 30
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=78.52 E-value=12 Score=29.57 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=45.2
Q ss_pred CchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHHHHHHHH
Q 030992 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLL 132 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tSi~ttl~ 132 (168)
.||+..-+.++.+.+....++ .+++....+..... +.. . ....... ..+...........
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~-v~i~~~~~~~~~~~-----~~~-~--------~~~~~~~-----~~~~~~~~~~~~~~ 72 (374)
T cd03801 13 VGGAERHVLELARALAARGHE-VTVLTPGDGGLPDE-----EEV-G--------GIVVVRP-----PPLLRVRRLLLLLL 72 (374)
T ss_pred cCcHhHHHHHHHHHHHhcCce-EEEEecCCCCCCce-----eee-c--------CcceecC-----CcccccchhHHHHH
Confidence 499999999999999854444 33444333332110 000 0 0000000 11111112223333
Q ss_pred HHHHHHHHHhhcCCcEEEeCCCcchhhe
Q 030992 133 ATTHALWLMVKIRPQVVMNLSLARVFFS 160 (168)
Q Consensus 133 s~~~sl~il~r~rPdviL~~G~~~~~p~ 160 (168)
.......++.+.+||+|+++++......
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~~~ 100 (374)
T cd03801 73 LALRLRRLLRRERFDVVHAHDWLALLAA 100 (374)
T ss_pred HHHHHHHHhhhcCCcEEEEechhHHHHH
Confidence 3344445566778999999998876553
No 31
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=74.72 E-value=3.2 Score=36.44 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHH
Q 030992 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKAR 91 (168)
Q Consensus 47 ilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~ 91 (168)
+=.=+|.||||.+||+-+.+ ...+--+-|....+.+.
T Consensus 25 vD~T~G~GGHS~aiL~~~~~--------~~li~~DrD~~a~~~a~ 61 (310)
T PF01795_consen 25 VDCTFGGGGHSKAILEKLPN--------GRLIGIDRDPEALERAK 61 (310)
T ss_dssp EETT-TTSHHHHHHHHT-TT---------EEEEEES-HHHHHHHH
T ss_pred EeecCCcHHHHHHHHHhCCC--------CeEEEecCCHHHHHHHH
Confidence 33458999999999876433 23444556776665543
No 32
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=72.49 E-value=11 Score=29.82 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=18.9
Q ss_pred CchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 53 SGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
.||+..-+.++.+.+....++ .+++.
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~-v~v~~ 36 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYD-VTLVV 36 (353)
T ss_pred CCCcchhHHHHHHHHHhcCce-EEEEE
Confidence 589999999999999655555 33333
No 33
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=72.14 E-value=6.8 Score=34.99 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCCcEEEEEEc------CchhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 42 PQPLSTLIVLG------SGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 42 ~~~~kilvvLG------SGGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
.+|+|++++.- .||=-.-+.++.+.|...-+ ...++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~--eV~vlt~~ 100 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGD--EVLVVTTD 100 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCC--eEEEEecC
Confidence 67899998863 25533566777777764333 34444433
No 34
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=71.34 E-value=22 Score=31.86 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEcCchhHHHHHHhHHhcccCCCC
Q 030992 48 LIVLGSGGHTAEMMNLLSVLQMDRFT 73 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~l~~~~y~ 73 (168)
.++.|+|+|..++.+.++.-+...|.
T Consensus 128 vlIiGag~~~~~l~~~l~~~~~~g~~ 153 (456)
T TIGR03022 128 AVIIGAGQNAAILYRALQSNPQLGLR 153 (456)
T ss_pred EEEEeCCHHHHHHHHHHhhCccCCcE
Confidence 77899999999999988754333344
No 35
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=69.75 E-value=23 Score=30.58 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=45.1
Q ss_pred CchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHHHHHHHH
Q 030992 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLL 132 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tSi~ttl~ 132 (168)
.||-..-+.++.+.+...-++ ..+++..+..... .+.+. ....++.+|-.+..++..+...+..+.
T Consensus 13 ~GG~e~~~~~la~~L~~~G~~--V~v~~~~~~~~~~--~~~~~----------~~i~v~~~p~~~~~~~~~~~~~~~~~~ 78 (398)
T cd03796 13 LGGVETHIYQLSQCLIKRGHK--VVVITHAYGNRVG--IRYLT----------NGLKVYYLPFVVFYNQSTLPTFFGTFP 78 (398)
T ss_pred cccHHHHHHHHHHHHHHcCCe--eEEEeccCCcCCC--ccccc----------CceeEEEecceeccCCccccchhhhHH
Confidence 588888888888888755443 3444333211100 00000 234566666544433332222222222
Q ss_pred HHHHHHHHHhhcCCcEEEeCCCcc
Q 030992 133 ATTHALWLMVKIRPQVVMNLSLAR 156 (168)
Q Consensus 133 s~~~sl~il~r~rPdviL~~G~~~ 156 (168)
.--..+.+++||+|-+.++..
T Consensus 79 ---~l~~~~~~~~~DiIh~~~~~~ 99 (398)
T cd03796 79 ---LLRNILIRERITIVHGHQAFS 99 (398)
T ss_pred ---HHHHHHHhcCCCEEEECCCCc
Confidence 122345588999999998644
No 36
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.72 E-value=49 Score=30.04 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=55.5
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCC-CCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCc
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDR-FTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ 121 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~-y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Q 121 (168)
+++|+|+|+|.==-..-|-.+++.++.+. ++. .++-.+...+.+=..++-+..+-. ...+.+.+.+.+.
T Consensus 2 ~~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~--~vi~TGQH~d~em~~~~le~~~i~-----~pdy~L~i~~~~~--- 71 (383)
T COG0381 2 KMLKVLTIFGTRPEAIKMAPLVKALEKDPDFEL--IVIHTGQHRDYEMLDQVLELFGIR-----KPDYDLNIMKPGQ--- 71 (383)
T ss_pred CceEEEEEEecCHHHHHHhHHHHHHHhCCCCce--EEEEecccccHHHHHHHHHHhCCC-----CCCcchhccccCC---
Confidence 45799999999988888888999988554 443 444444444332222221111100 1233344443333
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcc
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLAR 156 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~ 156 (168)
+. --+|...+..-=.++.+++||+||.=|--.
T Consensus 72 tl---~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~ 103 (383)
T COG0381 72 TL---GEITGNIIEGLSKVLEEEKPDLVLVHGDTN 103 (383)
T ss_pred CH---HHHHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 21 122222222333566799999999988543
No 37
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=66.93 E-value=28 Score=24.76 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=28.6
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchh
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~ 85 (168)
+-.++++.+-.|+|.|++++++....+ ...++.+...+..
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~--g~~iv~iT~~~~~ 99 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKER--GAKVIAITDSANS 99 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHc--CCeEEEEcCCCCC
Confidence 346889999999999999999988743 3355555444333
No 38
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=66.88 E-value=56 Score=26.52 Aligned_cols=21 Identities=19% Similarity=-0.002 Sum_probs=16.3
Q ss_pred HHHHhhcCCcEEEeCCCcchh
Q 030992 138 LWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 138 l~il~r~rPdviL~~G~~~~~ 158 (168)
..++.+.+||+|.+++.....
T Consensus 80 ~~~~~~~~~Divh~~~~~~~~ 100 (335)
T cd03802 80 ERALAAGDFDIVHNHSLHLPL 100 (335)
T ss_pred HHHHhcCCCCEEEecCcccch
Confidence 355567889999999987654
No 39
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=66.35 E-value=98 Score=27.71 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=16.3
Q ss_pred cEEEE-EEcCchhHHHHHHhHHhcccCCCCc---eEEEEeCC
Q 030992 45 LSTLI-VLGSGGHTAEMMNLLSVLQMDRFTP---RFYIAAAT 82 (168)
Q Consensus 45 ~kilv-vLGSGGHT~EMl~LL~~l~~~~y~~---rtyvv~~t 82 (168)
+.++| +-....... +.++.+..+.|.+ ..+++.++
T Consensus 51 vsVIIP~yNe~~~l~---~~l~sl~~q~yp~~~~eIiVVDd~ 89 (439)
T TIGR03111 51 ITIIIPVYNSEDTLF---NCIESIYNQTYPIELIDIILANNQ 89 (439)
T ss_pred EEEEEEeCCChHHHH---HHHHHHHhcCCCCCCeEEEEEECC
Confidence 44443 345554444 4445544444543 35666443
No 40
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=65.45 E-value=10 Score=31.77 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=15.8
Q ss_pred CchhHHHHHHhHHhcccCCCC
Q 030992 53 SGGHTAEMMNLLSVLQMDRFT 73 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~ 73 (168)
.||+..-+.+|.+.|...-++
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~ 40 (398)
T cd03800 20 TGGQNVYVLELARALARLGHE 40 (398)
T ss_pred CCceeehHHHHHHHHhccCce
Confidence 488998899998888744444
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=65.36 E-value=9.5 Score=33.41 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcc
Q 030992 124 VTSVWTTLLATTHALWLMVKIRPQVVMNLSLAR 156 (168)
Q Consensus 124 ~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~ 156 (168)
++..+.....+.....++.+++||+|+|++|..
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~ 115 (391)
T PRK13608 83 LDKCFYKYYGLNKLINLLIKEKPDLILLTFPTP 115 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHH
Confidence 334444444445666788899999999998864
No 42
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=65.28 E-value=57 Score=27.49 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=14.6
Q ss_pred HhhcCCcEEEeCCCcchhh
Q 030992 141 MVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 141 l~r~rPdviL~~G~~~~~p 159 (168)
..+.+||+|.++....++|
T Consensus 90 ~~~~~~Dvi~~~~~~~~~~ 108 (392)
T cd03805 90 LPDEKYDVFIVDQVSACVP 108 (392)
T ss_pred cccCCCCEEEEcCcchHHH
Confidence 4567899999987666554
No 43
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=60.66 E-value=58 Score=23.12 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccC
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMD 70 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~ 70 (168)
.+--++|+++..|+|.|+.+.++..+..
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~ 79 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKER 79 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHT
T ss_pred cccceeEeeeccccchhhhhhhHHHHhc
Confidence 3447889999999999999999987743
No 44
>PRK06849 hypothetical protein; Provisional
Probab=58.34 E-value=91 Score=27.22 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=44.7
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcc
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs 122 (168)
++.+++|.-|+.+..-++.|.+.... .+.++++.. ..+..+....- ..++.+|-.+.-...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G-----~~Vi~~d~~-~~~~~~~s~~~-------------d~~~~~p~p~~d~~~ 63 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAG-----HTVILADSL-KYPLSRFSRAV-------------DGFYTIPSPRWDPDA 63 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-----CEEEEEeCC-chHHHHHHHhh-------------hheEEeCCCCCCHHH
Confidence 45677777666667888888877643 245555443 32221111111 124556444432122
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcc
Q 030992 123 YVTSVWTTLLATTHALWLMVKIRPQVVMNLSLAR 156 (168)
Q Consensus 123 ~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~ 156 (168)
|...+. .+..++++|+||++.-..
T Consensus 64 ~~~~L~----------~i~~~~~id~vIP~~e~~ 87 (389)
T PRK06849 64 YIQALL----------SIVQRENIDLLIPTCEEV 87 (389)
T ss_pred HHHHHH----------HHHHHcCCCEEEECChHH
Confidence 222111 246678899999987643
No 45
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=57.83 E-value=29 Score=21.51 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030992 5 DDFYFYIMTIIATSVAIFLIRLLHVL 30 (168)
Q Consensus 5 ~~~~~~~~~~~l~~~~~l~~Rl~~vl 30 (168)
++||-...+++++++++.++-+++++
T Consensus 7 ~dfylc~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 7 FDFYLCFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666555555544
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=57.67 E-value=23 Score=28.47 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=15.9
Q ss_pred CchhHHHHHHhHHhcccCCCC
Q 030992 53 SGGHTAEMMNLLSVLQMDRFT 73 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~ 73 (168)
+|||..-...+.+.|..+.++
T Consensus 14 ~gG~~~~~~~l~~~L~~~g~~ 34 (359)
T cd03823 14 VGGAEVVAHDLAEALAKRGHE 34 (359)
T ss_pred ccchHHHHHHHHHHHHhcCCc
Confidence 589988888888888744444
No 47
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=57.36 E-value=1.1e+02 Score=26.79 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=46.3
Q ss_pred EEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEecccc---ccCcchhH
Q 030992 49 IVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSR---EVGQSYVT 125 (168)
Q Consensus 49 vvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaR---eV~Qs~~t 125 (168)
+.++-+|+-.-|..+-+.|..+-|+ .+.+....+.... |.. . .....++.++..+ ......+.
T Consensus 9 ~~~~~~~~~~R~~~~a~~L~~~G~~-V~ii~~~~~~~~~------~~~-~------~~~v~~~~~~~~~~~~~~~~~~~~ 74 (415)
T cd03816 9 LVLGDIGRSPRMQYHALSLAKHGWK-VDLVGYLETPPHD------EIL-S------NPNITIHPLPPPPQRLNKLPFLLF 74 (415)
T ss_pred EEecccCCCHHHHHHHHHHHhcCce-EEEEEecCCCCCH------HHh-c------CCCEEEEECCCCccccccchHHHH
Confidence 4567788888999988888865555 3333333222111 100 0 1235666665543 22222233
Q ss_pred HHHHHHHHHHHHHHH-HhhcCCcEEEeC
Q 030992 126 SVWTTLLATTHALWL-MVKIRPQVVMNL 152 (168)
Q Consensus 126 Si~ttl~s~~~sl~i-l~r~rPdviL~~ 152 (168)
.+...+..++..++. ..+.+||+|+++
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~Dvi~~~ 102 (415)
T cd03816 75 APLKVLWQFFSLLWLLYKLRPADYILIQ 102 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 333333333344343 345679999984
No 48
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=56.74 E-value=60 Score=29.79 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEEcCchhHHHHHHhHHh
Q 030992 48 LIVLGSGGHTAEMMNLLSV 66 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~ 66 (168)
.++.|+|+|..|+.+.++.
T Consensus 149 vLIIGaG~~a~~l~~~L~~ 167 (476)
T PRK15204 149 TIILGSGQNARGAYSALQS 167 (476)
T ss_pred EEEEECCHHHHHHHHHHHh
Confidence 6799999999999888864
No 49
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=55.20 E-value=88 Score=26.84 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=14.2
Q ss_pred HhhcCCcEEEeCCCcchhh
Q 030992 141 MVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 141 l~r~rPdviL~~G~~~~~p 159 (168)
+...+||++++-|=+.-+|
T Consensus 161 l~~~~~Dlivlagy~~il~ 179 (286)
T PRK06027 161 IDEYQPDLVVLARYMQILS 179 (286)
T ss_pred HHHhCCCEEEEecchhhcC
Confidence 4467899999998665554
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.13 E-value=65 Score=31.31 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCCc-EEEEEEc---CchhHHHHHHhHHhcccCCCC------------ceEEEEe----CC-chhhHHHHHHHHHhhhhh
Q 030992 42 PQPL-STLIVLG---SGGHTAEMMNLLSVLQMDRFT------------PRFYIAA----AT-DNMSLQKARVFEDSLLHK 100 (168)
Q Consensus 42 ~~~~-kilvvLG---SGGHT~EMl~LL~~l~~~~y~------------~rtyvv~----~t-D~~S~~k~~~~e~~~~~~ 100 (168)
-+|+ |++.|.+ .||=-...++|...++...++ ...++.. .+ |.... ++++
T Consensus 278 ~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~----~L~~----- 348 (694)
T PRK15179 278 ESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAA----TLAD----- 348 (694)
T ss_pred CCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHH----HHHh-----
Confidence 4567 8887754 577777888898888866552 2455552 22 22211 2222
Q ss_pred hhccCCceEEEEeccccccCcchhHHHH------------HHHHHHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 101 KVIKGSSAQFMQIYRSREVGQSYVTSVW------------TTLLATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 101 ~~~~~~~~~~~~ipRaReV~Qs~~tSi~------------ttl~s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
..+....+++.+..+-.-.++.. ........-..++.+++||+|.|.+....+
T Consensus 349 -----~Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~ 413 (694)
T PRK15179 349 -----AGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIF 413 (694)
T ss_pred -----CCCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHH
Confidence 23556666665543221111111 122222333356678899999999876543
No 51
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=54.20 E-value=71 Score=27.42 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=24.7
Q ss_pred EE-EEEEcCchhHHHHHHhHHhcccCCCCceEEEEe
Q 030992 46 ST-LIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (168)
Q Consensus 46 ki-lvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~ 80 (168)
|+ ++..|+-||..=|+.+-+.|...-++ .+|+..
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rGh~-V~~~t~ 36 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAGHE-VRVATP 36 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCe-EEEeeC
Confidence 44 45789999999999999999854433 444443
No 52
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=53.28 E-value=18 Score=28.70 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.3
Q ss_pred CchhHHHHHHhHHhcccCCCC
Q 030992 53 SGGHTAEMMNLLSVLQMDRFT 73 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~ 73 (168)
+||...-++.+.+.|....++
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~ 32 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHE 32 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCe
Confidence 788888888898888754444
No 53
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=52.92 E-value=16 Score=29.38 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.0
Q ss_pred cEEEEEEcC-chhHHHHHHhHHh-cc
Q 030992 45 LSTLIVLGS-GGHTAEMMNLLSV-LQ 68 (168)
Q Consensus 45 ~kilvvLGS-GGHT~EMl~LL~~-l~ 68 (168)
+|++|+.+| .|||.+|-+.+.. ++
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~ 26 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAR 26 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 478899888 8999999998776 53
No 54
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=51.22 E-value=79 Score=26.86 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=24.3
Q ss_pred EEEEEEc----CchhHHHHHHhHHhcccCCCCceEEEEeCCchh
Q 030992 46 STLIVLG----SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (168)
Q Consensus 46 kilvvLG----SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~ 85 (168)
|++++.. .||=-.-++.+.+.+....+....+++..++..
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~ 45 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKM 45 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCC
Confidence 4555543 388666778888888754334455666665543
No 55
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=51.01 E-value=90 Score=25.27 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=42.3
Q ss_pred cEEEEEEcCch--hHHHHHHhHHhcccCCCCceEEEEeCCch-hhHHHHHHHHHhhhhhhhccCCceEEEEeccccc
Q 030992 45 LSTLIVLGSGG--HTAEMMNLLSVLQMDRFTPRFYIAAATDN-MSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSRE 118 (168)
Q Consensus 45 ~kilvvLGSGG--HT~EMl~LL~~l~~~~y~~rtyvv~~tD~-~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaRe 118 (168)
-++++|+||+| |-+++..+.+.+..+ .-+.++++-|+. ...+|.+.+-+.... .++..++.+|-...
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~--~I~v~vI~~G~~~~~~~~l~~~~~~~~~-----~~~s~~~~~~~~~~ 177 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKN--NVSVDIINFGEIDDNTEKLTAFIDAVNG-----KDGSHLVSVPPGEN 177 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHc--CCeEEEEEeCCCCCCHHHHHHHHHHhcC-----CCCceEEEeCCCCc
Confidence 48999999995 446777888888744 357788866643 333455555443321 13356778876443
No 56
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=50.96 E-value=6.8 Score=34.29 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=25.3
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHH
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARV 92 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~ 92 (168)
+-+=.=+|-||||.+|++.+ + + ...+--+-|....+.+++
T Consensus 23 iyVD~TlG~GGHS~~iL~~l---~-~----g~vigiD~D~~Al~~ak~ 62 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQL---G-T----GRLIGIDRDPQAIAFAKE 62 (305)
T ss_pred EEEEeCCCChHHHHHHHHhC---C-C----CEEEEEcCCHHHHHHHHH
Confidence 44445689999999998764 2 1 123334667776666654
No 57
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=49.44 E-value=53 Score=25.30 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCC-CCceEEEEeCCchhhHHHH
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDR-FTPRFYIAAATDNMSLQKA 90 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~-y~~rtyvv~~tD~~S~~k~ 90 (168)
++.+-.+++|.||=...+..+.+.+.... ..+..+++...|.......
T Consensus 18 ~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~ 66 (158)
T cd05015 18 KKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAEL 66 (158)
T ss_pred CCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHH
Confidence 46789999999998776666655555322 2456788899998764333
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.07 E-value=97 Score=25.64 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=17.6
Q ss_pred cCchhHHHHHHhHHhcccCCCCceEEEEe
Q 030992 52 GSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (168)
Q Consensus 52 GSGGHT~EMl~LL~~l~~~~y~~rtyvv~ 80 (168)
..||...-+.++.+.|...-++ .+.++.
T Consensus 10 ~~gG~~~~~~~la~~L~~~G~~-v~v~~~ 37 (371)
T cd04962 10 TYGGSGVVATELGKALARRGHE-VHFITS 37 (371)
T ss_pred CCCCccchHHHHHHHHHhcCCc-eEEEec
Confidence 3588888888887777744444 334443
No 59
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=48.92 E-value=27 Score=24.73 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=10.6
Q ss_pred HhhcCCcEEEeCCCcch
Q 030992 141 MVKIRPQVVMNLSLARV 157 (168)
Q Consensus 141 l~r~rPdviL~~G~~~~ 157 (168)
..+++||+|.++++..+
T Consensus 69 ~~~~~~Dvv~~~~~~~~ 85 (160)
T PF13579_consen 69 ARRERPDVVHAHSPTAG 85 (160)
T ss_dssp HCT---SEEEEEHHHHH
T ss_pred hhccCCeEEEecccchh
Confidence 36888999999996533
No 60
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=48.88 E-value=64 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=19.5
Q ss_pred EcCchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 51 LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 51 LGSGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
.+.||=..-+++|.+.+...-++ .+.+.
T Consensus 9 ~~~GG~e~~~~~l~~~l~~~G~~-v~v~~ 36 (177)
T PF13439_consen 9 PNIGGAERVVLNLARALAKRGHE-VTVVS 36 (177)
T ss_dssp TSSSHHHHHHHHHHHHHHHTT-E-EEEEE
T ss_pred CCCChHHHHHHHHHHHHHHCCCE-EEEEE
Confidence 36789888889998888865555 44443
No 61
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=48.33 E-value=57 Score=30.29 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=38.7
Q ss_pred CCCCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCCchhhHHHHH
Q 030992 41 SPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMSLQKAR 91 (168)
Q Consensus 41 ~~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~tD~~S~~k~~ 91 (168)
.+++.+.+|++|-||=.---..+.+.+...... ++.++++..|.....++.
T Consensus 92 ~~~~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l 143 (486)
T PF00342_consen 92 TGKPITDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLL 143 (486)
T ss_dssp TSSB-SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHH
T ss_pred cCCceeEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHH
Confidence 356689999999999988888888888866554 689999999999875554
No 62
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=47.81 E-value=14 Score=28.54 Aligned_cols=17 Identities=12% Similarity=0.346 Sum_probs=13.5
Q ss_pred HHHhhcCCcEEEeCCCc
Q 030992 139 WLMVKIRPQVVMNLSLA 155 (168)
Q Consensus 139 ~il~r~rPdviL~~G~~ 155 (168)
.++-+.+||+|+||=|-
T Consensus 83 ~~l~~~~PD~IIsThp~ 99 (169)
T PF06925_consen 83 RLLREFQPDLIISTHPF 99 (169)
T ss_pred HHHhhcCCCEEEECCcc
Confidence 45568889999999774
No 63
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=47.01 E-value=18 Score=23.52 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=16.5
Q ss_pred EEEEEEcCc-hhHHHHHHhHHhc
Q 030992 46 STLIVLGSG-GHTAEMMNLLSVL 67 (168)
Q Consensus 46 kilvvLGSG-GHT~EMl~LL~~l 67 (168)
++++++|+| |++.-|.+-|+..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~ 23 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKA 23 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHH
Confidence 578999999 7777666666663
No 64
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=46.92 E-value=9.2 Score=32.84 Aligned_cols=17 Identities=29% Similarity=0.688 Sum_probs=13.6
Q ss_pred EEEEEcCchhHHHHHHh
Q 030992 47 TLIVLGSGGHTAEMMNL 63 (168)
Q Consensus 47 ilvvLGSGGHT~EMl~L 63 (168)
+=.-+|+||||.-+++-
T Consensus 48 ~DmTfGagGHt~~ilqk 64 (303)
T KOG2782|consen 48 VDMTFGAGGHTSSILQK 64 (303)
T ss_pred EEEeccCCcchHHHHHh
Confidence 34578999999988775
No 65
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=46.47 E-value=50 Score=24.63 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=12.9
Q ss_pred cCchhHHHHHHhHHhccc
Q 030992 52 GSGGHTAEMMNLLSVLQM 69 (168)
Q Consensus 52 GSGGHT~EMl~LL~~l~~ 69 (168)
+.|||...+..+.+.+..
T Consensus 11 ~~~G~~~~~~~l~~~L~~ 28 (229)
T cd01635 11 GGGGVELVLLDLAKALAR 28 (229)
T ss_pred CCCCchhHHHHHHHHHHH
Confidence 467777777777777764
No 66
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=46.04 E-value=11 Score=32.87 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=14.9
Q ss_pred EEEEEEcCchhHHHHHHhH
Q 030992 46 STLIVLGSGGHTAEMMNLL 64 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL 64 (168)
-+=.=||.||||.++++.+
T Consensus 23 vlD~TlG~GGhS~~il~~~ 41 (296)
T PRK00050 23 YVDGTFGGGGHSRAILERL 41 (296)
T ss_pred EEEeCcCChHHHHHHHHhC
Confidence 3336699999999998764
No 67
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.88 E-value=1.6e+02 Score=27.01 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=61.9
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcc
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs 122 (168)
++--+.+|||-=||.--|..=-..+-...| ..=++++.++-+.++..+. .+..++.+|.-+ .-|+
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf--~VdliGy~~s~p~e~l~~h------------prI~ih~m~~l~-~~~~ 76 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGF--QVDLIGYVESIPLEELLNH------------PRIRIHGMPNLP-FLQG 76 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCC--eEEEEEecCCCChHHHhcC------------CceEEEeCCCCc-ccCC
Confidence 334567999999999999876666654444 3456788888777544331 347788777666 4444
Q ss_pred ---hhHHHHHHHHHHHHHHHHH-hhcCCcEEEeC-CCcc
Q 030992 123 ---YVTSVWTTLLATTHALWLM-VKIRPQVVMNL-SLAR 156 (168)
Q Consensus 123 ---~~tSi~ttl~s~~~sl~il-~r~rPdviL~~-G~~~ 156 (168)
.+.-++..++.++.=++.+ +..+||.++.- =|++
T Consensus 77 ~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~i 115 (444)
T KOG2941|consen 77 GPRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSI 115 (444)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCC
Confidence 4445555555555444433 35668988764 4443
No 68
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=45.25 E-value=43 Score=28.37 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=20.3
Q ss_pred cEEEEEEcCch-----hHHHH--HHhHHhcccCCCCceEEEEeCCc
Q 030992 45 LSTLIVLGSGG-----HTAEM--MNLLSVLQMDRFTPRFYIAAATD 83 (168)
Q Consensus 45 ~kilvvLGSGG-----HT~EM--l~LL~~l~~~~y~~rtyvv~~tD 83 (168)
-.+.||||+|. .-..+ -||...++..+-.+.-+++-+||
T Consensus 45 ~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg 90 (239)
T PRK10834 45 RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGD 90 (239)
T ss_pred CCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 47899999873 33444 36655544222122334454444
No 69
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.30 E-value=1.9e+02 Score=24.20 Aligned_cols=78 Identities=8% Similarity=0.035 Sum_probs=44.3
Q ss_pred chhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHHHHHHHHH
Q 030992 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLA 133 (168)
Q Consensus 54 GGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tSi~ttl~s 133 (168)
.||-.=++.|-+.+.... ...+|++ ++|..... ...++ ..+.++.+|...+ + -..
T Consensus 14 ~GHv~Rcl~LA~~l~~~g-~~v~f~~-~~~~~~~~--~~i~~----------~g~~v~~~~~~~~---------~--~~d 68 (279)
T TIGR03590 14 LGHVMRCLTLARALHAQG-AEVAFAC-KPLPGDLI--DLLLS----------AGFPVYELPDESS---------R--YDD 68 (279)
T ss_pred ccHHHHHHHHHHHHHHCC-CEEEEEe-CCCCHHHH--HHHHH----------cCCeEEEecCCCc---------h--hhh
Confidence 599999999999996333 3244544 44433321 11111 2355666765533 0 012
Q ss_pred HHHHHHHHhhcCCcEEEeCCCcc
Q 030992 134 TTHALWLMVKIRPQVVMNLSLAR 156 (168)
Q Consensus 134 ~~~sl~il~r~rPdviL~~G~~~ 156 (168)
.-....++.+++||++++.+...
T Consensus 69 ~~~~~~~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 69 ALELINLLEEEKFDILIVDHYGL 91 (279)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCC
Confidence 22344556677899999998753
No 70
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=44.05 E-value=25 Score=27.79 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 030992 1 MNKMDDFYFYIMTIIATSV 19 (168)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~ 19 (168)
||-|+.+||.++.++++++
T Consensus 1 ~~~~~~~fwq~I~FlIll~ 19 (154)
T PRK06568 1 MNFLDESFWLAVSFVIFVY 19 (154)
T ss_pred CCchHhHHHHHHHHHHHHH
Confidence 7889999998877765544
No 71
>PRK06242 flavodoxin; Provisional
Probab=43.63 E-value=24 Score=26.30 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.3
Q ss_pred cEEEEEEcCc--hhHHHHHHhHHh
Q 030992 45 LSTLIVLGSG--GHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGSG--GHT~EMl~LL~~ 66 (168)
+|++|+-+|+ |||.+|-+.+..
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~ 24 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAE 24 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHH
Confidence 4688888885 999999998764
No 72
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=42.44 E-value=28 Score=27.75 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.4
Q ss_pred EEEEEEcC-chhHHHHHHhHHh-cc
Q 030992 46 STLIVLGS-GGHTAEMMNLLSV-LQ 68 (168)
Q Consensus 46 kilvvLGS-GGHT~EMl~LL~~-l~ 68 (168)
|++|+-+| .|||..|.+.+.. ++
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~ 27 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAR 27 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 78999988 8999999997765 44
No 73
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=42.33 E-value=68 Score=25.74 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=19.1
Q ss_pred CchhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
.||+.....++.+.|....+ ..+++..+
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~--~v~v~~~~ 40 (374)
T cd03817 13 VNGVATSIRRLAEELEKRGH--EVYVVAPS 40 (374)
T ss_pred CCCeehHHHHHHHHHHHcCC--eEEEEeCC
Confidence 48999999999999875444 33444433
No 74
>PRK10307 putative glycosyl transferase; Provisional
Probab=42.11 E-value=1.3e+02 Score=25.96 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=10.4
Q ss_pred hcCCcEEEeCCCc
Q 030992 143 KIRPQVVMNLSLA 155 (168)
Q Consensus 143 r~rPdviL~~G~~ 155 (168)
+.+||+|.++.|.
T Consensus 104 ~~~~Div~~~~p~ 116 (412)
T PRK10307 104 RWRPDRVIGVVPT 116 (412)
T ss_pred CCCCCEEEEeCCc
Confidence 3789999998754
No 75
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=42.10 E-value=1.1e+02 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEcCchhHHHHHHhHHhcccCCCCceEEE
Q 030992 48 LIVLGSGGHTAEMMNLLSVLQMDRFTPRFYI 78 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~l~~~~y~~rtyv 78 (168)
.++.|+|....++.+-++.=+...|.+.=|+
T Consensus 128 vLIvGag~~a~~l~~~L~~~~~~g~~vvG~i 158 (445)
T TIGR03025 128 VLIVGTGEAARELAAALSRNPDLGYRVVGFV 158 (445)
T ss_pred EEEEECCHHHHHHHHHHhhCccCCeEEEEEE
Confidence 7888999988888877765332345433333
No 76
>KOG1753 consensus 40S ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=41.83 E-value=17 Score=28.41 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=41.5
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccc
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSRE 118 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaRe 118 (168)
=+.+.+-|-+.-|||++++..+=+.+...... |+-.+-|..|.+.+++.--++ +..-.+-.||.+|
T Consensus 62 fa~vdi~v~~~ggghvsqiyairqa~~kalva---yyqkyvDE~skkeiKd~li~y--------DrtlLVADprr~e 127 (145)
T KOG1753|consen 62 FAGVDIRVRVKGGGHVSQIYAIRQAIAKALVA---YYQKYVDEQSKKEIKDILIQY--------DRTLLVADPRRCE 127 (145)
T ss_pred hCCCceEEEEecCchHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHhC--------CceEEEcCccccc
Confidence 45678888899999999999986665533211 233344777776554432221 1244667788887
No 77
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=40.55 E-value=63 Score=20.99 Aligned_cols=33 Identities=3% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 030992 7 FYFYIMTIIATSVAIFLIRLLHVLYLTGKSRRL 39 (168)
Q Consensus 7 ~~~~~~~~~l~~~~~l~~Rl~~vl~~~~~~~~~ 39 (168)
.|.+++.+.+++...+.+.++.-+-.+..|+++
T Consensus 12 ~F~~lIC~Fl~~~~~F~~F~~Kqilfr~~~~sn 44 (54)
T PF06716_consen 12 AFGFLICLFLFCLVVFIWFVYKQILFRNNPQSN 44 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 355566666666666666666644444444433
No 78
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.41 E-value=1.2e+02 Score=23.70 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=35.5
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHH
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARV 92 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~ 92 (168)
.++.+++|++|+|.--+-=+-+-+.|...-+....|++...+..|..-..+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~ 73 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQ 73 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHH
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHH
Confidence 445699999999988888888877776566765667777776666653333
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=40.37 E-value=2.1e+02 Score=24.55 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=14.4
Q ss_pred HHhhcCCcEEEeCCCcchhh
Q 030992 140 LMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 140 il~r~rPdviL~~G~~~~~p 159 (168)
.+...+||++++-|=+.-+|
T Consensus 160 ~l~~~~~Dlivlagy~~il~ 179 (286)
T PRK13011 160 VVEESGAELVVLARYMQVLS 179 (286)
T ss_pred HHHHhCcCEEEEeChhhhCC
Confidence 34557899999988765544
No 80
>PLN02275 transferase, transferring glycosyl groups
Probab=39.65 E-value=2.1e+02 Score=24.63 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=46.3
Q ss_pred EEEEcCchhHHHHHHhHHhcccCC-CCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEecccccc--Ccchh
Q 030992 48 LIVLGSGGHTAEMMNLLSVLQMDR-FTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREV--GQSYV 124 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~l~~~~-y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV--~Qs~~ 124 (168)
.+++|=+|.-.-|..+...+-.+. ++ .+.+....+.. . . |.. . ...+.++..|..+.- -..++
T Consensus 9 ~~~~~~~g~~~r~~~~~~~l~~~~~~~-v~vi~~~~~~~-~---~--~~~-~------~~~v~v~r~~~~~~~~~~~~~~ 74 (371)
T PLN02275 9 VVVLGDFGRSPRMQYHALSLARQASFQ-VDVVAYGGSEP-I---P--ALL-N------HPSIHIHLMVQPRLLQRLPRVL 74 (371)
T ss_pred EEEecCCCCCHHHHHHHHHHHhcCCce-EEEEEecCCCC-C---H--HHh-c------CCcEEEEECCCcccccccccch
Confidence 456689998888888888776443 33 33333322221 1 0 110 0 124667777532111 01111
Q ss_pred H---HHHHHHHHHHHHHHHH--hhcCCcEEEeCCCc
Q 030992 125 T---SVWTTLLATTHALWLM--VKIRPQVVMNLSLA 155 (168)
Q Consensus 125 t---Si~ttl~s~~~sl~il--~r~rPdviL~~G~~ 155 (168)
. .+.-.++.+...++.+ .+++||+|.++.|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 110 (371)
T PLN02275 75 YALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPP 110 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCC
Confidence 1 1111334444444432 35889999997654
No 81
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.57 E-value=69 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=18.4
Q ss_pred CchhHHHHHHhHHhcccCCCCceEEEEe
Q 030992 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~~rtyvv~ 80 (168)
.||+...+.+|.+.|...-++ .++++.
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~-v~~~~~ 39 (364)
T cd03814 13 VNGVVRTLQRLVEHLRARGHE-VLVIAP 39 (364)
T ss_pred ccceehHHHHHHHHHHHCCCE-EEEEeC
Confidence 389999999999998744333 334433
No 82
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=38.18 E-value=42 Score=24.94 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.7
Q ss_pred cEEEEEEcCc---hhHHHHHHhHHhc
Q 030992 45 LSTLIVLGSG---GHTAEMMNLLSVL 67 (168)
Q Consensus 45 ~kilvvLGSG---GHT~EMl~LL~~l 67 (168)
+|++++.||- |+|..+.+.+...
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~ 26 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQ 26 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHH
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHH
Confidence 5899999997 9999999988763
No 83
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=37.95 E-value=91 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=21.2
Q ss_pred cCchhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 52 GSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 52 GSGGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
+.||+...+..+++.+....++ .+++....
T Consensus 12 ~~~g~~~~~~~~~~~l~~~g~~-v~v~~~~~ 41 (377)
T cd03798 12 NNGGGGIFVKELARALAKRGVE-VTVLAPGP 41 (377)
T ss_pred CCchHHHHHHHHHHHHHHCCCc-eEEEecCC
Confidence 3699999999999999855555 44444333
No 84
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=37.07 E-value=1.1e+02 Score=19.87 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=26.9
Q ss_pred EcCchhH--HHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHH
Q 030992 51 LGSGGHT--AEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFED 95 (168)
Q Consensus 51 LGSGGHT--~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~ 95 (168)
...+||. .+.++.++..... ...++..+.|......+....+
T Consensus 26 ~~~~G~~~~~~~~~~l~~~~~~---~~Iii~~D~D~~G~~~~~~i~~ 69 (76)
T smart00493 26 VALGGHLLKKEIIKLLKRLAKK---KEVILATDPDREGEAIAWKLAE 69 (76)
T ss_pred EEEeeeecHHHHHHHHHHHhcC---CEEEEEcCCChhHHHHHHHHHH
Confidence 3445665 5777777775532 4778888888886655544443
No 85
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=36.75 E-value=55 Score=28.56 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.3
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccC
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMD 70 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~ 70 (168)
.+.-++++=||||--.-|=.|+..+..+
T Consensus 44 ~~iPTIfIhGsgG~asS~~~Mv~ql~~~ 71 (288)
T COG4814 44 VAIPTIFIHGSGGTASSLNGMVNQLLPD 71 (288)
T ss_pred cccceEEEecCCCChhHHHHHHHHhhhc
Confidence 4668899999999999999999998744
No 86
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.69 E-value=2.8e+02 Score=23.93 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCCc
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATD 83 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~tD 83 (168)
++++|+.|+.+-+||. |..|++......+. ....++++..
T Consensus 91 ~~~~kiavl~Sg~g~n--l~al~~~~~~~~l~~~i~~visn~~ 131 (289)
T PRK13010 91 GQRPKVVIMVSKFDHC--LNDLLYRWRMGELDMDIVGIISNHP 131 (289)
T ss_pred CCCeEEEEEEeCCCcc--HHHHHHHHHCCCCCcEEEEEEECCh
Confidence 4556876666555665 45666666544332 2455666554
No 87
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=36.26 E-value=87 Score=25.07 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=15.6
Q ss_pred cCchhHHHHHHhHHhcccCCCC
Q 030992 52 GSGGHTAEMMNLLSVLQMDRFT 73 (168)
Q Consensus 52 GSGGHT~EMl~LL~~l~~~~y~ 73 (168)
..||+-.-..++.+.|....++
T Consensus 12 ~~gG~~~~~~~l~~~L~~~g~~ 33 (375)
T cd03821 12 KYGGPVRVVLNLSKALAKLGHE 33 (375)
T ss_pred ccCCeehHHHHHHHHHHhcCCc
Confidence 4688888888888888644555
No 88
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=35.05 E-value=2.2e+02 Score=22.25 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=12.1
Q ss_pred HHHhhcCCcEEEeCCCcchhh
Q 030992 139 WLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 139 ~il~r~rPdviL~~G~~~~~p 159 (168)
..+...+||++++.|=+--+|
T Consensus 73 ~~l~~~~~Dl~v~~~~~~il~ 93 (181)
T PF00551_consen 73 ELLESLNPDLIVVAGYGRILP 93 (181)
T ss_dssp HHHHHTT-SEEEESS-SS---
T ss_pred HHHHhhccceeehhhhHHHhh
Confidence 445567899999998765444
No 89
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=34.86 E-value=1.1e+02 Score=29.36 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=29.2
Q ss_pred CCCcEEEEEEcCchhHHHHHHh-HH-hcccCCCCceEEEEeCCchhhH
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNL-LS-VLQMDRFTPRFYIAAATDNMSL 87 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~L-L~-~l~~~~y~~rtyvv~~tD~~S~ 87 (168)
.+++|++++||||==|+.|++. +| .++...++ .-+.++|..+.
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~---veV~~~~Vsev 548 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIP---IIMDSCAVNDY 548 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCCC---eEEEEechHhC
Confidence 4778999999999999999875 12 24544443 33666666543
No 90
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=33.86 E-value=1.8e+02 Score=25.97 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=19.8
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccCCCCc
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTP 74 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~~y~~ 74 (168)
+-.++.|+|....++.+-++.-+...|.+
T Consensus 129 ~rvLIiGag~~~~~l~~~L~~~~~~g~~v 157 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPELGYRV 157 (451)
T ss_pred CcEEEEeCCHHHHHHHHHHHhCccCCcEE
Confidence 33788899998888888776543334543
No 91
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.77 E-value=59 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCC
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDR 71 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~ 71 (168)
.+--++|+++-.|.|.|+++.++..+...
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g 73 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKG 73 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcC
Confidence 34567999999999999999999988543
No 92
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.66 E-value=58 Score=23.33 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=28.1
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchh
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~ 85 (168)
+-.++++.+-.|.|.|+.+.++...... - .+..+.+.+..
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~a~~~g-~-~vi~iT~~~~s 86 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPHLKRRG-A-PIIAITGNPNS 86 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCC-C-eEEEEeCCCCC
Confidence 3467899999999999999999987432 3 34444443333
No 93
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=33.58 E-value=3.5e+02 Score=24.18 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 132 LATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 132 ~s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
-..........+.++|+||.-|-|..+
T Consensus 67 ~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 67 ESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 444556677778899999999998765
No 94
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=33.09 E-value=3.2e+02 Score=23.89 Aligned_cols=28 Identities=7% Similarity=-0.091 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 131 LLATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 131 l~s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
.-..-.......+.++|+||.-|-|...
T Consensus 69 ~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 69 EAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 3444455556677899999999998764
No 95
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=32.14 E-value=4.1e+02 Score=24.54 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcEEEeC-CCcchhhe
Q 030992 124 VTSVWTTLLATTHALWLMVKIRPQVVMNL-SLARVFFS 160 (168)
Q Consensus 124 ~tSi~ttl~s~~~sl~il~r~rPdviL~~-G~~~~~p~ 160 (168)
+|-+...+-+++-++=.+.|..||+-|-| |=+-.+|+
T Consensus 129 fTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~ 166 (465)
T KOG1387|consen 129 FTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPI 166 (465)
T ss_pred eehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHH
Confidence 56677778888888889999999998854 55555543
No 96
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.34 E-value=70 Score=21.63 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=19.7
Q ss_pred EEEEEEcCchhHHHHH-HhHHh-cccCCCC
Q 030992 46 STLIVLGSGGHTAEMM-NLLSV-LQMDRFT 73 (168)
Q Consensus 46 kilvvLGSGGHT~EMl-~LL~~-l~~~~y~ 73 (168)
|++++||+|==|+.|+ +-++. ++...++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 6899999997777777 55555 4433343
No 97
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.99 E-value=61 Score=27.36 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=15.5
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 030992 2 NKMDDFYFYIMTIIATSVAIF 22 (168)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~l 22 (168)
|||.---|.|++++|++++.+
T Consensus 126 ~K~amLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFLICTL 146 (227)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 588888888888777766553
No 98
>PRK10125 putative glycosyl transferase; Provisional
Probab=30.01 E-value=34 Score=30.36 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=28.0
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchh
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~ 85 (168)
+.+-.++|.||--.-|+.|.+.+..+-.+ ..++...++..
T Consensus 4 l~i~~~l~~GGaeri~~~L~~~l~~~G~~-~~i~~~~~~~~ 43 (405)
T PRK10125 4 LQFNVRLAEGGAAGVALDLHQRALQQGLA-SHFVYGYGKGG 43 (405)
T ss_pred EEEEeeecCCchhHHHHHHHHHHHhcCCe-EEEEEecCCCc
Confidence 34557899999999999999998755544 33444554433
No 99
>PRK09267 flavodoxin FldA; Validated
Probab=29.84 E-value=61 Score=24.83 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=16.7
Q ss_pred cEEEEEEcC-chhHHHHHHhHHh
Q 030992 45 LSTLIVLGS-GGHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGS-GGHT~EMl~LL~~ 66 (168)
+|++|+-+| .|||.+|-+.+..
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~ 24 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQK 24 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHH
Confidence 368888777 7999998876654
No 100
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=29.66 E-value=3.6e+02 Score=23.10 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=47.0
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccC
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~ 120 (168)
++++|+.|+.+-+||. |..|++........ ....++++-..... .++ + .+.-++.+++...-.
T Consensus 82 ~~~~ki~vl~Sg~g~n--l~~l~~~~~~g~l~~~i~~visn~~~~~~-~A~--~-----------~gIp~~~~~~~~~~~ 145 (280)
T TIGR00655 82 DKLKRVAILVSKEDHC--LGDLLWRWYSGELDAEIALVISNHEDLRS-LVE--R-----------FGIPFHYIPATKDNR 145 (280)
T ss_pred CCCcEEEEEEcCCChh--HHHHHHHHHcCCCCcEEEEEEEcChhHHH-HHH--H-----------hCCCEEEcCCCCcch
Confidence 4567877766666775 45667776544332 25566666643322 121 1 123455555422100
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 121 Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
+.+=. .-+..+...+||++++-|=+.-+|
T Consensus 146 ~~~e~----------~~~~~l~~~~~Dlivlagym~il~ 174 (280)
T TIGR00655 146 VEHEK----------RQLELLKQYQVDLVVLAKYMQILS 174 (280)
T ss_pred hhhHH----------HHHHHHHHhCCCEEEEeCchhhCC
Confidence 00100 112334567899999988665444
No 101
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=29.66 E-value=3e+02 Score=22.11 Aligned_cols=44 Identities=9% Similarity=0.305 Sum_probs=25.3
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeC-CchhhHHHH
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAA-TDNMSLQKA 90 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~-tD~~S~~k~ 90 (168)
+|+.|+++.+||-.+ .+++.+...... ....++++ .|....+++
T Consensus 1 ~riail~sg~gs~~~--~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A 46 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ--AIIDACKEGKIPASVVLVISNKPDAYGLERA 46 (190)
T ss_pred CeEEEEEcCCChhHH--HHHHHHHcCCCCceEEEEEECCccchHHHHH
Confidence 378888888888876 556665544332 24455555 454433333
No 102
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=29.23 E-value=63 Score=25.74 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=27.0
Q ss_pred hHHHHHHhHHh----------cccCCCCceEEEEeCCchhhHHHHH
Q 030992 56 HTAEMMNLLSV----------LQMDRFTPRFYIAAATDNMSLQKAR 91 (168)
Q Consensus 56 HT~EMl~LL~~----------l~~~~y~~rtyvv~~tD~~S~~k~~ 91 (168)
-|+.+|+||.. +|.+.+..-+|+.+++++.|.+|-.
T Consensus 58 rTgLLMKLLSEQQe~kvska~wdteqwkte~yinesteaqs~qKeq 103 (154)
T PF14914_consen 58 RTGLLMKLLSEQQEVKVSKAQWDTEQWKTENYINESTEAQSEQKEQ 103 (154)
T ss_pred HHhHHHHHHHHHHHHHHhHHhhhhhhccccchhhhchhhhhhhccc
Confidence 47888888873 5655555578999999999887753
No 103
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=29.03 E-value=3.9e+02 Score=23.35 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 133 ATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 133 s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
+.-.........++|+||.-|-|.+.
T Consensus 63 ~v~~~~~~~~~~~~D~IIaiGGGS~~ 88 (374)
T cd08183 63 LVDAAVAEARNAGCDVVIAIGGGSVI 88 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEecCchHH
Confidence 44455566777899999999998754
No 104
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.52 E-value=4.3e+02 Score=23.56 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 133 ATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 133 s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
..-.+.....+.+||+||.-|-|.++
T Consensus 94 ~v~~~~~~~r~~~~D~IiavGGGS~i 119 (395)
T PRK15454 94 DVCAAVAQLRESGCDGVIAFGGGSVL 119 (395)
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHH
Confidence 34456666778899999999998765
No 105
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=27.65 E-value=77 Score=26.62 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEcCchhHHHHHHhHHhcccC
Q 030992 48 LIVLGSGGHTAEMMNLLSVLQMD 70 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~l~~~ 70 (168)
.-|.|+||-|+=|.+|.+.+...
T Consensus 2 i~~vG~gGKTtl~~~l~~~~~~~ 24 (232)
T TIGR03172 2 IAFVGAGGKTSTMFWLAAEYRKE 24 (232)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHC
Confidence 45789999999999999988743
No 106
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=27.44 E-value=2.8e+02 Score=24.07 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 131 LLATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 131 l~s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
.-..-.+.-.+.+.+||.||.-|-|.+.
T Consensus 64 ~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 91 (366)
T PF00465_consen 64 LEDVDEAAEQARKFGADCIIAIGGGSVM 91 (366)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEESHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence 3344455566678899999999988754
No 107
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=27.43 E-value=2.6e+02 Score=20.71 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=37.1
Q ss_pred cEEEEEEc---------CchhHHHHHHhHHhcccCCCCceEEEEeCCch---hhH-HHHHHHHHhhhhhhhccCCceEEE
Q 030992 45 LSTLIVLG---------SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDN---MSL-QKARVFEDSLLHKKVIKGSSAQFM 111 (168)
Q Consensus 45 ~kilvvLG---------SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~---~S~-~k~~~~e~~~~~~~~~~~~~~~~~ 111 (168)
.-++|||| ++++..=|-.-++-++ +.+.+...+.+..+. .+. +-.++.-.+. +. ....+.
T Consensus 2 aD~ivVlG~~~~~~~~~~~~~~~R~~~a~~L~~-~g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~----gv--p~~~I~ 74 (155)
T PF02698_consen 2 ADAIVVLGSALDPDGQLSPESRERLDEAARLYK-AGYAPRILFSGGYGHGDGRSEAEAMRDYLIEL----GV--PEERII 74 (155)
T ss_dssp -SEEEEES-----------S-HHHHHHHHHHHH--HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---------GGGEE
T ss_pred CcEEEECCcCccccccccHhHHHHHHHHHHHHh-cCCCCeEEECCCCCCCCCCCHHHHHHHHHHhc----cc--chheeE
Confidence 35789999 5555555555544455 345556666652221 122 1111111110 00 112344
Q ss_pred EeccccccCcchhHHHHHHHHHHHHHHHHHhhcC-CcEEEeCCC
Q 030992 112 QIYRSREVGQSYVTSVWTTLLATTHALWLMVKIR-PQVVMNLSL 154 (168)
Q Consensus 112 ~ipRaReV~Qs~~tSi~ttl~s~~~sl~il~r~r-PdviL~~G~ 154 (168)
.-+.++. |.-|+..+..++-+.+ .+++|+|-+
T Consensus 75 ~e~~s~~-----------T~ena~~~~~~~~~~~~~~iilVT~~ 107 (155)
T PF02698_consen 75 LEPKSTN-----------TYENARFSKRLLKERGWQSIILVTSP 107 (155)
T ss_dssp EE----S-----------HHHHHHHHHHHHHT-SSS-EEEE--C
T ss_pred ccCCCCC-----------HHHHHHHHHHHHHhhcCCeEEEECCH
Confidence 4555554 7778888877777554 466666543
No 108
>PF13289 SIR2_2: SIR2-like domain
Probab=26.13 E-value=1.1e+02 Score=22.04 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=24.4
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccC--CCCceEEEEeCCch
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMD--RFTPRFYIAAATDN 84 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~--~y~~rtyvv~~tD~ 84 (168)
+.++|+|-|+.-..+..+++.+... ...++.|++...+.
T Consensus 87 ~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 87 KTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 5678889999766666666554322 22356777766655
No 109
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=26.10 E-value=3e+02 Score=21.06 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=40.5
Q ss_pred EEEcCchh-----HHHHHHhHHhcccCCC--CceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccc
Q 030992 49 IVLGSGGH-----TAEMMNLLSVLQMDRF--TPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSRE 118 (168)
Q Consensus 49 vvLGSGGH-----T~EMl~LL~~l~~~~y--~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaRe 118 (168)
.+++..+. -.+...+.+.+....+ ..+++++.+.|.++.+-+..+-+.++.. +.+..|+-+-+..+
T Consensus 71 ~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep----p~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 71 IIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP----PENTYFILITNNPS 143 (162)
T ss_dssp EEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST----TTTEEEEEEES-GG
T ss_pred EEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC----CCCEEEEEEECChH
Confidence 33355544 5777777776554433 4789999999999998777766655432 23456665555444
No 110
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=25.99 E-value=93 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 030992 13 TIIATSVAIFLIRLLHVLYL 32 (168)
Q Consensus 13 ~~~l~~~~~l~~Rl~~vl~~ 32 (168)
.++|+.+++++.|+++..+.
T Consensus 12 iVLLISfiIlfgRl~Y~~I~ 31 (59)
T PF11119_consen 12 IVLLISFIILFGRLIYSAIG 31 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34577788899999997773
No 111
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.98 E-value=4.4e+02 Score=22.86 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 134 TTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 134 ~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
.-.........++|+||.-|-|.++
T Consensus 69 v~~~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 69 VDAAVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHH
Confidence 3334444556789999999998654
No 112
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=25.93 E-value=1.1e+02 Score=22.53 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=17.3
Q ss_pred EEEcCchhHHHHHHhHHhcccCCCCce
Q 030992 49 IVLGSGGHTAEMMNLLSVLQMDRFTPR 75 (168)
Q Consensus 49 vvLGSGGHT~EMl~LL~~l~~~~y~~r 75 (168)
...|+||+..++.+.++.-+...|...
T Consensus 81 ~~v~~~~~~~~~~~~l~~~~~~g~~vv 107 (175)
T PF13727_consen 81 LIVGAGGAGRELAEALRSNPRLGYRVV 107 (175)
T ss_dssp EEE--SHHHHHHHHHHHH--SSSEEEE
T ss_pred EEEEEechHHHHHHHHHhhhhcCceEE
Confidence 666799999999999877665556533
No 113
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=25.89 E-value=34 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.023 Sum_probs=21.3
Q ss_pred EEEcCchhHHH-HHHhHHhcccCCCCceEEEE
Q 030992 49 IVLGSGGHTAE-MMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 49 vvLGSGGHT~E-Ml~LL~~l~~~~y~~rtyvv 79 (168)
++|.+|+|+.+ +-+.++.+.. .+....+.+
T Consensus 59 ~fL~~G~h~~~DIp~~l~~~~~-~~~~~~v~~ 89 (105)
T PF01903_consen 59 YFLFPGYHVKRDIPEALAEARE-RHPGIEVRV 89 (105)
T ss_dssp ESSSSSHHHHCHHHHHHCHHHH-CSTTEEEEE
T ss_pred eeecCccchHhHHHHHHHHHHh-hCCceEEEE
Confidence 67999999999 8888888773 343233333
No 114
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.89 E-value=67 Score=22.83 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=15.2
Q ss_pred cEEEEEEcCchhHHHHH
Q 030992 45 LSTLIVLGSGGHTAEMM 61 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl 61 (168)
.|+++|||||==|+.|+
T Consensus 3 ~kILvvCgsG~~TS~m~ 19 (94)
T PRK10310 3 RKIIVACGGAVATSTMA 19 (94)
T ss_pred CeEEEECCCchhHHHHH
Confidence 37999999999999995
No 115
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.88 E-value=66 Score=21.32 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.6
Q ss_pred EEEEEEcCchhHHHHHHh
Q 030992 46 STLIVLGSGGHTAEMMNL 63 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~L 63 (168)
|+++|+|+|==|++|++-
T Consensus 2 kilivC~~G~~~s~~l~~ 19 (85)
T cd05568 2 KALVVCPSGIGTSRLLKS 19 (85)
T ss_pred eEEEECCCCHHHHHHHHH
Confidence 689999999777777754
No 116
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=25.45 E-value=1.7e+02 Score=25.90 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=29.4
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHH
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFE 94 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e 94 (168)
.+.+=.=+|-|||+.++|.- +. .-..++--+-|....+.+++..
T Consensus 25 giyiD~TlG~GGHS~~iL~~---l~----~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEK---LP----DLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred cEEEEecCCCcHhHHHHHHh---CC----CCCeEEEEcCCHHHHHHHHHHh
Confidence 45666779999999987754 33 1133556677888776666543
No 117
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=25.15 E-value=2.4e+02 Score=22.70 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=20.5
Q ss_pred CchhHHHHHHhHHhcccCCCCceEEEEeCCchh
Q 030992 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~ 85 (168)
.||-..-+.++.+.+...... .++++...+..
T Consensus 14 ~gG~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~ 45 (365)
T cd03809 14 PTGIGRYARELLRALLKLDPE-EVLLLLPGAPG 45 (365)
T ss_pred CCcHHHHHHHHHHHHHhcCCc-eEEEEecCccc
Confidence 477777788888888854333 55555554433
No 118
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.88 E-value=50 Score=27.66 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.1
Q ss_pred HhhcCCcEEEeCCCcch
Q 030992 141 MVKIRPQVVMNLSLARV 157 (168)
Q Consensus 141 l~r~rPdviL~~G~~~~ 157 (168)
+.+.+||+||+.|-+.+
T Consensus 57 i~~~~Pd~Vi~~G~a~g 73 (222)
T PRK13195 57 IAEIEPALVIMLGEYPG 73 (222)
T ss_pred HHHHCCCEEEEeCccCC
Confidence 36789999999998754
No 119
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=24.86 E-value=1.6e+02 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=27.1
Q ss_pred EeccccccCcchhHHHHHHHHHH---HHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 112 QIYRSREVGQSYVTSVWTTLLAT---THALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 112 ~ipRaReV~Qs~~tSi~ttl~s~---~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
..-+..++..+|+.. +-.++-+ +..+.- ++..||+||.-|-|++=|
T Consensus 59 ~~~~~~~~~~PYIPG-~LafRE~p~l~~~~~~-l~~~PDlilVDG~G~~Hp 107 (208)
T cd06559 59 TAVAVGEVTFPYIPG-LLAFREGPPLLEALEK-LKTKPDLLLVDGHGIAHP 107 (208)
T ss_pred EEEEEEecCCCCcch-hHHHhhHHHHHHHHHh-CCCCCCEEEEeCCccccC
Confidence 445566677777655 2222222 222222 235699999999998755
No 120
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=24.39 E-value=4.7e+02 Score=22.72 Aligned_cols=26 Identities=12% Similarity=-0.079 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 133 ATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 133 s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
............++|+||.-|-|..+
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSvi 94 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSAL 94 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 44445555667889999999998754
No 121
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.96 E-value=5e+02 Score=22.82 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCCCcchh
Q 030992 131 LLATTHALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 131 l~s~~~sl~il~r~rPdviL~~G~~~~~ 158 (168)
+-+.-.....+...++|+||.-|-|...
T Consensus 70 ~~~v~~~~~~~~~~~~D~IIaiGGGS~i 97 (383)
T cd08186 70 VDQVDEAAKLGREFGAQAVIAIGGGSPI 97 (383)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 3344445556667889999999988654
No 122
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=23.85 E-value=82 Score=23.08 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=17.6
Q ss_pred EEEEEEcCchhHHHHHHhHHhc
Q 030992 46 STLIVLGSGGHTAEMMNLLSVL 67 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l 67 (168)
|++++||+|-=|+=|.+-++..
T Consensus 3 kILlvCg~G~STSlla~k~k~~ 24 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEY 24 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHH
Confidence 7999999999888666666663
No 123
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=23.80 E-value=1.7e+02 Score=29.65 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=13.3
Q ss_pred HHHhhcCCcEEEeC-CCcch
Q 030992 139 WLMVKIRPQVVMNL-SLARV 157 (168)
Q Consensus 139 ~il~r~rPdviL~~-G~~~~ 157 (168)
.++.+++||.|+++ |..++
T Consensus 75 ~ii~~e~~DaIlp~~gg~~~ 94 (1050)
T TIGR01369 75 KIIEKERPDAILPTFGGQTA 94 (1050)
T ss_pred HHHHHhCCCEEEECCCChhH
Confidence 34568999999985 64444
No 124
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.78 E-value=3.9e+02 Score=21.57 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=50.4
Q ss_pred chhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCcchhHHHHHHHHH
Q 030992 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLA 133 (168)
Q Consensus 54 GGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs~~tSi~ttl~s 133 (168)
||=-+---+|-..+..+ .+...|...+|..+. + +.+. ..++...+|-.+. | ...++.-.+.|
T Consensus 17 GGfET~ve~L~~~l~~~--g~~v~Vyc~~~~~~~-~----~~~y--------~gv~l~~i~~~~~-g--~~~si~yd~~s 78 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSK--GIDVTVYCRSDYYPY-K----EFEY--------NGVRLVYIPAPKN-G--SAESIIYDFLS 78 (185)
T ss_pred CcHHHHHHHHHHHHhcC--CceEEEEEccCCCCC-C----Cccc--------CCeEEEEeCCCCC-C--chHHHHHHHHH
Confidence 55444444454445433 334455555554422 1 2221 2466777776643 2 26788888889
Q ss_pred HHHHHHHHhhc--CCcEEEeCCCcc
Q 030992 134 TTHALWLMVKI--RPQVVMNLSLAR 156 (168)
Q Consensus 134 ~~~sl~il~r~--rPdviL~~G~~~ 156 (168)
+.+|+....+. +.|+++..|.++
T Consensus 79 l~~al~~~~~~~~~~~ii~ilg~~~ 103 (185)
T PF09314_consen 79 LLHALRFIKQDKIKYDIILILGYGI 103 (185)
T ss_pred HHHHHHHHhhccccCCEEEEEcCCc
Confidence 99998766644 688999988874
No 125
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.60 E-value=91 Score=22.25 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.0
Q ss_pred CcEEEEEEcCchhHHHHHHhHHh
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSV 66 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~ 66 (168)
..+++++||+|-=|+-|..=++.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~ 25 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNK 25 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHH
Confidence 35899999999777755555554
No 126
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=23.11 E-value=5e+02 Score=22.49 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=20.7
Q ss_pred cEEEEE-EcCchhHHHHHHhHHhcccCCCCc--eEEEEeCCchhhHHHHHHHH
Q 030992 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTP--RFYIAAATDNMSLQKARVFE 94 (168)
Q Consensus 45 ~kilvv-LGSGGHT~EMl~LL~~l~~~~y~~--rtyvv~~tD~~S~~k~~~~e 94 (168)
+.+++- .+...+..|-+ +.+-.+.|.. ..++.+++|+.+.+-++++.
T Consensus 43 VSViiP~~nee~~l~~~L---~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~ 92 (373)
T TIGR03472 43 VSVLKPLHGDEPELYENL---ASFCRQDYPGFQMLFGVQDPDDPALAVVRRLR 92 (373)
T ss_pred eEEEEECCCCChhHHHHH---HHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHH
Confidence 555443 34444444544 4443344432 22333444544444444443
No 127
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.02 E-value=3.2e+02 Score=20.21 Aligned_cols=43 Identities=21% Similarity=0.411 Sum_probs=29.3
Q ss_pred EEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHh
Q 030992 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDS 96 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~ 96 (168)
+-.+|+|+||=-.....-|.... .. ..+++..+. +|++++-++
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g---~~-~i~i~nRt~----~ra~~l~~~ 55 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALG---AK-EITIVNRTP----ERAEALAEE 55 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTT---SS-EEEEEESSH----HHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcC---CC-EEEEEECCH----HHHHHHHHH
Confidence 56789999998888887776664 33 678887753 444554443
No 128
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.99 E-value=1.1e+02 Score=24.24 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=26.7
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
--++++.+..|.|.|+++.++..+... .+..-+++..
T Consensus 107 ~Dl~i~iS~sG~t~~~~~~~~~ak~~g-~~~I~iT~~~ 143 (188)
T PRK13937 107 GDVLIGISTSGNSPNVLAALEKARELG-MKTIGLTGRD 143 (188)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence 368999999999999999999988433 3233444433
No 129
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.82 E-value=1e+02 Score=25.04 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=27.8
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCc
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD 83 (168)
+--++++++..|.|.|+++.++..+... -+..-+++..|
T Consensus 113 ~~DllI~iS~SG~t~~vi~a~~~Ak~~G-~~vI~iT~~~~ 151 (196)
T PRK13938 113 PGDTLFAISTSGNSMSVLRAAKTARELG-VTVVAMTGESG 151 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 3468999999999999999999888433 33444444443
No 130
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=22.55 E-value=98 Score=25.80 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=29.0
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCc
Q 030992 114 YRSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLA 155 (168)
Q Consensus 114 pRaReV~Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~ 155 (168)
..+..-|+--==++..++.+++..+.-.. .+||+||.||=-
T Consensus 38 ~~~~~~G~~~CD~p~~l~~s~l~~i~~~~-~~~dfii~tGD~ 78 (296)
T cd00842 38 PPAGPWGDYGCDSPWRLVESALEAIKKNH-PKPDFILWTGDL 78 (296)
T ss_pred CCCCCCcCcCCCCcHHHHHHHHHHHHHhC-CCCCEEEEcCCC
Confidence 34555555555577888888887776554 589999999943
No 131
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.37 E-value=2e+02 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=19.4
Q ss_pred CchhHHHHHHhHHhcccCCCCceEEEEe
Q 030992 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (168)
Q Consensus 53 SGGHT~EMl~LL~~l~~~~y~~rtyvv~ 80 (168)
.||...-..++.+.|....++ .+.++.
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~-v~v~~~ 39 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIE-VAVLCA 39 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCc-eEEEec
Confidence 689998888998999865555 444443
No 132
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.32 E-value=5.4e+02 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHHHHhhcCCcEEEeCCCcchh
Q 030992 136 HALWLMVKIRPQVVMNLSLARVF 158 (168)
Q Consensus 136 ~sl~il~r~rPdviL~~G~~~~~ 158 (168)
.......+.++|+||.-|-|.+.
T Consensus 70 ~~~~~~~~~~~D~IIaiGGGS~i 92 (386)
T cd08191 70 DAASAAARAGPDVIIGLGGGSCI 92 (386)
T ss_pred HHHHHHHhcCCCEEEEeCCchHH
Confidence 34455667899999999988654
No 133
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=22.27 E-value=1.8e+02 Score=20.60 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=16.3
Q ss_pred CCcEEEEEEcCchhHH-HHHHhHHhcc
Q 030992 43 QPLSTLIVLGSGGHTA-EMMNLLSVLQ 68 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~-EMl~LL~~l~ 68 (168)
+...+++++++||+.+ +...+|+..-
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G 104 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFG 104 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcC
Confidence 4557888888865555 5555555443
No 134
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=22.20 E-value=60 Score=28.11 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=13.0
Q ss_pred HHHhhcCCcEEEeCCCc
Q 030992 139 WLMVKIRPQVVMNLSLA 155 (168)
Q Consensus 139 ~il~r~rPdviL~~G~~ 155 (168)
.++.++|||+|+||-|-
T Consensus 94 ~~i~~~~pDvIi~thp~ 110 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPL 110 (382)
T ss_pred HHHHhcCcCEEEEeCcC
Confidence 35567799999998754
No 135
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.04 E-value=1.5e+02 Score=28.19 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 030992 4 MDDFYFYIMTIIATSVAIFLIRL 26 (168)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~l~~Rl 26 (168)
|.++|+..++++.++++++++..
T Consensus 8 ~pl~~~~~ivvv~i~~ilv~if~ 30 (548)
T COG2268 8 MPLLMLIAIVVVVILVILVLIFF 30 (548)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444
No 136
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.70 E-value=1.4e+02 Score=22.44 Aligned_cols=22 Identities=14% Similarity=0.460 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030992 7 FYFYIMTIIATSVAIFLIRLLH 28 (168)
Q Consensus 7 ~~~~~~~~~l~~~~~l~~Rl~~ 28 (168)
||+++.++++++.+++..|++.
T Consensus 18 ~FA~L~i~~FiILLIi~~~IW~ 39 (121)
T PF10669_consen 18 FFAFLFIVVFIILLIITKSIWH 39 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555553
No 137
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.62 E-value=1.2e+02 Score=23.18 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=27.7
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCc
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD 83 (168)
+--++++++-.|.|.|++++++...... -+..-+++..+
T Consensus 79 ~~D~~i~iS~sG~t~~~~~~~~~a~~~g-~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSGNSKNVLKAIEAAKDKG-MKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 3468999999999999999999988443 33444444433
No 138
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.41 E-value=1.5e+02 Score=30.06 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=14.6
Q ss_pred HHhhcCCcEEEeC-CCcchhhe
Q 030992 140 LMVKIRPQVVMNL-SLARVFFS 160 (168)
Q Consensus 140 il~r~rPdviL~~-G~~~~~p~ 160 (168)
++.+++||.|+++ |..+++..
T Consensus 77 ii~~e~~D~Iip~~gg~~~l~~ 98 (1066)
T PRK05294 77 IIEKERPDAILPTMGGQTALNL 98 (1066)
T ss_pred HHHHHCcCEEEECCCCchhhhh
Confidence 3468899999985 65555443
No 139
>PRK06756 flavodoxin; Provisional
Probab=21.11 E-value=2.7e+02 Score=20.63 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=21.3
Q ss_pred EEEEcC---c-h-hHHHHHHhHHhcccCCC-CceEEEEeCCch
Q 030992 48 LIVLGS---G-G-HTAEMMNLLSVLQMDRF-TPRFYIAAATDN 84 (168)
Q Consensus 48 lvvLGS---G-G-HT~EMl~LL~~l~~~~y-~~rtyvv~~tD~ 84 (168)
.|++|| | | +..+|...++.++.... .....+.+.+|.
T Consensus 52 ~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~ 94 (148)
T PRK06756 52 GIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSCDS 94 (148)
T ss_pred eEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCC
Confidence 456664 2 3 45568888887653333 334566666664
No 140
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=21.11 E-value=3.5e+02 Score=24.68 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=19.2
Q ss_pred EEEEcCchhHHHHHHhHHhcccCCCCc
Q 030992 48 LIVLGSGGHTAEMMNLLSVLQMDRFTP 74 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~l~~~~y~~ 74 (168)
.++.|+|....++.+-|+.-+...|.+
T Consensus 146 VLIvGaG~~g~~l~~~L~~~~~~g~~v 172 (463)
T PRK10124 146 VAVAGDLPAGQMLLESFRNEPWLGFEV 172 (463)
T ss_pred EEEEECCHHHHHHHHHHhcCccCCeEE
Confidence 778899999998888876543233443
No 141
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=20.97 E-value=5.2e+02 Score=22.13 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=13.3
Q ss_pred HHHHHHHHhhcCCcEEEe
Q 030992 134 TTHALWLMVKIRPQVVMN 151 (168)
Q Consensus 134 ~~~sl~il~r~rPdviL~ 151 (168)
+-..+...+|.+||.|+.
T Consensus 193 ~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 193 MTRLLKATLRLRPDRIIV 210 (299)
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 445556667899999985
No 142
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=20.91 E-value=3.7e+02 Score=22.66 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=19.8
Q ss_pred cCchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 52 GSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 52 GSGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
.+||=..-++++.+.++...++...++.
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~ 37 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVI 37 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEec
Confidence 4688888888998888866666444443
No 143
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.70 E-value=2e+02 Score=20.87 Aligned_cols=37 Identities=3% Similarity=0.073 Sum_probs=22.1
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
.--+.++.+||+-+.++.++++.+... -. .++.+...
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~~~~~-~~-~vi~it~~ 98 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKEVKAR-GA-KVIVITDD 98 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHHHHHc-CC-EEEEEecC
Confidence 334455555776667799998888732 23 44444433
No 144
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=20.61 E-value=2e+02 Score=20.63 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=19.2
Q ss_pred EEEEcC---c-h-hH-HHHHHhHHhcccCCCCc-eEEEEeCCch
Q 030992 48 LIVLGS---G-G-HT-AEMMNLLSVLQMDRFTP-RFYIAAATDN 84 (168)
Q Consensus 48 lvvLGS---G-G-HT-~EMl~LL~~l~~~~y~~-rtyvv~~tD~ 84 (168)
.+|+|| | | ++ .+|...++.+....... ...+.+.++.
T Consensus 48 ~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~ 91 (140)
T TIGR01753 48 AVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSGDW 91 (140)
T ss_pred EEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecCCC
Confidence 455554 2 4 44 67777777765332332 3344455443
No 145
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=20.24 E-value=6.1e+02 Score=25.17 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEEcCchhHHHHHHhHHhcccCCCCc
Q 030992 40 KSPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTP 74 (168)
Q Consensus 40 ~~~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~ 74 (168)
+.+.+.|+++.+-+-.|...|+.|++...+..-+|
T Consensus 454 ~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp 488 (832)
T PLN03159 454 KHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSP 488 (832)
T ss_pred CCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCC
Confidence 35678899999999999999999999865544443
Done!