Query 030992
Match_columns 168
No_of_seqs 105 out of 265
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s2u_A UDP-N-acetylglucosamine 98.4 6.7E-07 2.3E-11 76.0 8.1 105 46-165 4-112 (365)
2 1f0k_A MURG, UDP-N-acetylgluco 96.8 0.0054 1.8E-07 50.0 8.6 101 45-160 7-111 (364)
3 3otg_A CALG1; calicheamicin, T 95.7 0.028 9.7E-07 46.6 7.4 42 40-83 16-58 (412)
4 3okp_A GDP-mannose-dependent a 95.0 0.1 3.5E-06 42.4 8.4 93 43-159 3-100 (394)
5 1vgv_A UDP-N-acetylglucosamine 94.6 0.093 3.2E-06 42.9 7.3 101 45-162 1-104 (384)
6 3beo_A UDP-N-acetylglucosamine 93.1 0.39 1.3E-05 38.8 8.2 27 43-69 7-33 (375)
7 2iw1_A Lipopolysaccharide core 92.4 0.58 2E-05 37.6 8.4 94 45-163 1-98 (374)
8 3ot5_A UDP-N-acetylglucosamine 92.1 0.27 9.1E-06 42.0 6.3 107 42-164 25-134 (403)
9 2x6q_A Trehalose-synthase TRET 91.8 1.5 5.3E-05 36.0 10.5 40 42-82 38-80 (416)
10 3dzc_A UDP-N-acetylglucosamine 91.5 0.48 1.6E-05 40.2 7.2 108 42-164 23-131 (396)
11 3rsc_A CALG2; TDP, enediyne, s 91.3 1 3.5E-05 37.2 8.8 43 39-83 15-58 (415)
12 3oti_A CALG3; calicheamicin, T 90.9 0.78 2.7E-05 38.0 7.7 38 42-80 18-56 (398)
13 4fzr_A SSFS6; structural genom 90.3 0.71 2.4E-05 38.1 7.0 32 41-72 12-44 (398)
14 3fro_A GLGA glycogen synthase; 90.3 1.3 4.5E-05 36.1 8.5 37 43-80 1-43 (439)
15 1v4v_A UDP-N-acetylglucosamine 89.3 1.5 5.2E-05 35.6 8.1 25 45-69 6-30 (376)
16 3tsa_A SPNG, NDP-rhamnosyltran 87.3 2.8 9.6E-05 34.2 8.5 27 44-70 1-28 (391)
17 3h4t_A Glycosyltransferase GTF 87.2 3.9 0.00013 34.2 9.5 37 45-83 1-38 (404)
18 1iir_A Glycosyltransferase GTF 87.0 2.3 7.8E-05 35.5 8.0 34 45-79 1-35 (415)
19 3c48_A Predicted glycosyltrans 87.0 1.1 3.9E-05 36.9 6.0 34 40-73 16-61 (438)
20 1rrv_A Glycosyltransferase GTF 86.9 2.6 8.8E-05 35.1 8.2 33 46-79 2-35 (416)
21 2iuy_A Avigt4, glycosyltransfe 86.6 0.96 3.3E-05 36.2 5.2 38 43-82 2-56 (342)
22 2gek_A Phosphatidylinositol ma 86.0 0.39 1.3E-05 39.1 2.6 40 41-82 17-61 (406)
23 2iyf_A OLED, oleandomycin glyc 86.0 3.3 0.00011 34.3 8.4 27 45-71 8-35 (430)
24 2r60_A Glycosyl transferase, g 83.9 1.8 6E-05 36.9 5.9 38 43-81 6-59 (499)
25 2yjn_A ERYCIII, glycosyltransf 83.1 3.2 0.00011 34.9 7.2 36 43-79 19-55 (441)
26 3ia7_A CALG4; glycosysltransfe 81.3 8.1 0.00028 31.2 8.7 26 46-71 6-32 (402)
27 2p6p_A Glycosyl transferase; X 75.8 9.5 0.00032 31.0 7.6 26 45-70 1-27 (384)
28 4hwg_A UDP-N-acetylglucosamine 75.4 7.2 0.00025 33.0 6.9 103 44-164 9-113 (385)
29 2iya_A OLEI, oleandomycin glyc 74.2 26 0.00089 28.8 10.0 35 44-79 12-47 (424)
30 4amg_A Snogd; transferase, pol 69.4 7.2 0.00024 31.7 5.3 37 42-79 20-57 (400)
31 4ea9_A Perosamine N-acetyltran 68.2 5.3 0.00018 30.7 4.1 19 48-66 15-33 (220)
32 2vsy_A XCC0866; transferase, g 64.8 28 0.00097 29.7 8.5 33 41-73 202-239 (568)
33 2zki_A 199AA long hypothetical 60.5 7.7 0.00026 28.9 3.6 22 45-66 5-26 (199)
34 2x5n_A SPRPN10, 26S proteasome 57.9 20 0.00068 27.4 5.6 69 44-119 106-176 (192)
35 3bfp_A Acetyltransferase; LEFT 53.3 12 0.00041 28.3 3.6 19 48-66 6-24 (194)
36 3nkl_A UDP-D-quinovosamine 4-d 51.5 13 0.00046 26.0 3.5 22 46-67 5-26 (141)
37 4ds3_A Phosphoribosylglycinami 45.9 1.1E+02 0.0036 24.0 8.6 90 42-159 5-100 (209)
38 3o1l_A Formyltetrahydrofolate 45.8 1.3E+02 0.0044 24.9 9.7 91 43-159 104-195 (302)
39 3nbm_A PTS system, lactose-spe 45.8 20 0.00069 25.3 3.6 26 42-67 4-29 (108)
40 1wg8_A Predicted S-adenosylmet 45.3 7.1 0.00024 32.7 1.3 15 49-63 29-43 (285)
41 3d7n_A Flavodoxin, WRBA-like p 45.0 16 0.00053 27.5 3.1 24 43-66 5-29 (193)
42 1tvm_A PTS system, galactitol- 43.5 16 0.00053 25.8 2.7 32 42-73 19-52 (113)
43 3lou_A Formyltetrahydrofolate 43.0 1.4E+02 0.0047 24.5 9.3 91 43-159 94-185 (292)
44 2acv_A Triterpene UDP-glucosyl 42.7 89 0.0031 26.6 7.9 38 44-82 9-49 (463)
45 1rtt_A Conserved hypothetical 41.5 21 0.00071 26.5 3.3 23 44-66 6-31 (193)
46 2lci_A Protein OR36; structura 40.9 73 0.0025 22.8 5.9 40 45-88 52-91 (134)
47 2jjm_A Glycosyl transferase, g 39.9 20 0.00069 28.9 3.2 18 138-155 92-109 (394)
48 1psw_A ADP-heptose LPS heptosy 39.9 1.1E+02 0.0037 24.2 7.6 22 45-66 1-26 (348)
49 3tka_A Ribosomal RNA small sub 38.2 7.1 0.00024 33.6 0.1 21 44-64 59-79 (347)
50 3kcq_A Phosphoribosylglycinami 36.8 1.5E+02 0.0052 23.2 8.9 88 43-159 7-96 (215)
51 1ydg_A Trp repressor binding p 35.5 33 0.0011 25.7 3.6 25 44-68 6-32 (211)
52 2vzf_A NADH-dependent FMN redu 35.2 29 0.001 26.0 3.3 22 45-66 3-27 (197)
53 2wnf_A CMP-N-acetylneuraminate 32.6 21 0.00073 29.6 2.2 32 26-57 78-109 (298)
54 3b6i_A Flavoprotein WRBA; flav 32.6 36 0.0012 24.9 3.3 24 45-68 2-27 (198)
55 1rli_A Trp repressor binding p 32.1 32 0.0011 24.9 2.9 22 45-66 4-28 (184)
56 1e2b_A Enzyme IIB-cellobiose; 30.8 63 0.0022 22.3 4.2 23 44-66 3-25 (106)
57 3czc_A RMPB; alpha/beta sandwi 29.9 40 0.0014 23.4 3.0 27 42-68 16-44 (110)
58 3n0v_A Formyltetrahydrofolate 29.6 2.3E+02 0.0078 23.1 9.6 92 42-159 88-180 (286)
59 2q62_A ARSH; alpha/beta, flavo 28.8 53 0.0018 26.2 3.9 24 42-65 32-58 (247)
60 2a5l_A Trp repressor binding p 28.1 47 0.0016 24.3 3.3 22 45-66 6-28 (200)
61 3tqr_A Phosphoribosylglycinami 27.3 2.2E+02 0.0076 22.2 9.4 20 140-159 78-97 (215)
62 1jkx_A GART;, phosphoribosylgl 27.1 2.2E+02 0.0074 22.0 9.9 20 140-159 74-93 (212)
63 2l2q_A PTS system, cellobiose- 26.8 19 0.00066 25.0 0.8 18 44-62 4-21 (109)
64 1f4p_A Flavodoxin; electron tr 26.4 54 0.0018 22.8 3.2 22 45-66 1-23 (147)
65 3auf_A Glycinamide ribonucleot 26.3 2.4E+02 0.0081 22.2 9.3 19 141-159 97-115 (229)
66 3obi_A Formyltetrahydrofolate 25.5 1.3E+02 0.0046 24.5 5.9 92 42-159 87-180 (288)
67 1vkr_A Mannitol-specific PTS s 25.5 39 0.0013 24.3 2.3 26 43-68 12-39 (125)
68 3gfs_A FMN-dependent NADPH-azo 23.8 45 0.0015 24.2 2.4 22 45-66 1-25 (174)
69 1obo_A Flavodoxin; electron tr 23.5 57 0.002 23.3 3.0 22 45-66 2-24 (169)
70 1rzu_A Glycogen synthase 1; gl 22.9 1.2E+02 0.004 25.1 5.1 36 45-82 1-43 (485)
71 1p68_A De novo designed protei 22.5 28 0.00096 24.0 1.0 15 52-66 52-66 (102)
72 3svl_A Protein YIEF; E. coli C 22.1 70 0.0024 24.1 3.3 99 43-155 3-119 (193)
73 4em6_D Glucose-6-phosphate iso 22.0 1.5E+02 0.005 27.0 5.8 50 42-91 147-196 (553)
74 1m6y_A S-adenosyl-methyltransf 21.7 31 0.0011 28.4 1.3 19 46-64 29-48 (301)
75 3p9x_A Phosphoribosylglycinami 21.7 2.9E+02 0.0099 21.5 8.4 20 140-159 76-95 (211)
76 1sqs_A Conserved hypothetical 21.4 71 0.0024 24.6 3.3 22 45-66 2-26 (242)
77 3nrb_A Formyltetrahydrofolate 20.9 2.1E+02 0.007 23.4 6.2 93 42-159 86-179 (287)
78 1m3s_A Hypothetical protein YC 20.6 2.4E+02 0.0082 20.2 7.0 27 44-70 79-105 (186)
79 3hjb_A Glucose-6-phosphate iso 20.4 1.6E+02 0.0056 26.8 5.8 50 42-91 169-218 (574)
80 2xhz_A KDSD, YRBH, arabinose 5 20.3 93 0.0032 22.4 3.6 39 44-83 96-134 (183)
No 1
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.40 E-value=6.7e-07 Score=75.99 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=68.8
Q ss_pred EEEEEEc-CchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccc---cccCc
Q 030992 46 STLIVLG-SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRS---REVGQ 121 (168)
Q Consensus 46 kilvvLG-SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRa---ReV~Q 121 (168)
||++.-| +|||..=.+.+.+.|....++ .+| +++.+.. |.++..+ ..+.+..+|-. |+---
T Consensus 4 ~i~i~~GGTgGHi~palala~~L~~~g~~-V~~-vg~~~g~--------e~~~v~~-----~g~~~~~i~~~~~~~~~~~ 68 (365)
T 3s2u_A 4 NVLIMAGGTGGHVFPALACAREFQARGYA-VHW-LGTPRGI--------ENDLVPK-----AGLPLHLIQVSGLRGKGLK 68 (365)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTTCE-EEE-EECSSST--------HHHHTGG-----GTCCEEECC----------
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHhCCCE-EEE-EECCchH--------hhchhhh-----cCCcEEEEECCCcCCCCHH
Confidence 6777654 899999999998888754433 444 4445544 2222111 12445555422 12123
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheeeeec
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSLVIL 165 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~~~~ 165 (168)
+.+.+++..++++..+..++.++|||+|+++|.-+++|.+++|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~ 112 (365)
T 3s2u_A 69 SLVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAAR 112 (365)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHH
Confidence 35677889999999999999999999999999999999988764
No 2
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=96.79 E-value=0.0054 Score=50.00 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=56.2
Q ss_pred cEEEEEE-cCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCc--
Q 030992 45 LSTLIVL-GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ-- 121 (168)
Q Consensus 45 ~kilvvL-GSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Q-- 121 (168)
+|++++. |.|||..-++.|.+.|...-+ ...+++..+.... ..+++ ..+.++.++...--+.
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~--~V~v~~~~~~~~~---~~~~~----------~g~~~~~~~~~~~~~~~~ 71 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGW--QVRWLGTADRMEA---DLVPK----------HGIEIDFIRISGLRGKGI 71 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTC--EEEEEECTTSTHH---HHGGG----------GTCEEEECCCCCCTTCCH
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCC--EEEEEecCCcchh---hhccc----------cCCceEEecCCccCcCcc
Confidence 6888774 458999988888888874433 4444544443211 11111 1244555543211111
Q ss_pred -chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhhe
Q 030992 122 -SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFS 160 (168)
Q Consensus 122 -s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~ 160 (168)
..+..++..+..+.....++.+.+||+|+++++...++.
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~ 111 (364)
T 1f0k_A 72 KALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPG 111 (364)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHH
Confidence 112233444445555556677889999999987655553
No 3
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=95.70 E-value=0.028 Score=46.56 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEE-cCchhHHHHHHhHHhcccCCCCceEEEEeCCc
Q 030992 40 KSPQPLSTLIVL-GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (168)
Q Consensus 40 ~~~~~~kilvvL-GSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD 83 (168)
++++++|++++. |.|||..-++.|.+.|...-+ ...+++..+
T Consensus 16 ~~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~Gh--eV~v~~~~~ 58 (412)
T 3otg_A 16 IEGRHMRVLFASLGTHGHTYPLLPLATAARAAGH--EVTFATGEG 58 (412)
T ss_dssp --CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTC--EEEEEECGG
T ss_pred cccceeEEEEEcCCCcccHHHHHHHHHHHHHCCC--EEEEEccHH
Confidence 446778997666 788999999999999885443 334444333
No 4
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=95.00 E-value=0.1 Score=42.36 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=57.4
Q ss_pred CCcEEEEEEc-----CchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEecccc
Q 030992 43 QPLSTLIVLG-----SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSR 117 (168)
Q Consensus 43 ~~~kilvvLG-----SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaR 117 (168)
+++|+++|.. .||+..-+.++.+.+. .++ .+.++...+.... ..++.. ..+.++.+|+.+
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~--g~~-v~v~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~~ 67 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQD--PES-IVVFASTQNAEEA---HAYDKT---------LDYEVIRWPRSV 67 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTSC--GGG-EEEEEECSSHHHH---HHHHTT---------CSSEEEEESSSS
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHhc--CCe-EEEEECCCCccch---hhhccc---------cceEEEEccccc
Confidence 4579999987 6999999999999994 333 4444444433321 112211 346788888766
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 118 EVGQSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 118 eV~Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
.... .........++.+.+||+|.++++.....
T Consensus 68 ~~~~---------~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~ 100 (394)
T 3okp_A 68 MLPT---------PTTAHAMAEIIREREIDNVWFGAAAPLAL 100 (394)
T ss_dssp CCSC---------HHHHHHHHHHHHHTTCSEEEESSCTTGGG
T ss_pred cccc---------hhhHHHHHHHHHhcCCCEEEECCcchHHH
Confidence 5322 12233444566678999999988765433
No 5
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=94.64 E-value=0.093 Score=42.87 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=52.4
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccCC-CCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEE-EEeccccccCcc
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMDR-FTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQF-MQIYRSREVGQS 122 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~~-y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~-~~ipRaReV~Qs 122 (168)
+|++++.|.-.+..-+..+++.+..+. +.....+++..+....+. ++. . ...+ ..++-.+. +.+
T Consensus 1 mkIl~v~~~~~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~---~~~-~---------~~~~~~~~~~~~~-~~~ 66 (384)
T 1vgv_A 1 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQV---LKL-F---------SIVPDYDLNIMQP-GQG 66 (384)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHH---HHH-H---------TCCCSEECCCCST-TSC
T ss_pred CeEEEEecccHHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHH---HHH-c---------CCCCCcceecCCC-Ccc
Confidence 589999998777777788888887433 243333344433332211 111 1 0111 22222221 122
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC-cchhheee
Q 030992 123 YVTSVWTTLLATTHALWLMVKIRPQVVMNLSL-ARVFFSSL 162 (168)
Q Consensus 123 ~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~-~~~~p~~~ 162 (168)
.... ....+.....++.+++||+|++.|. ..++|..+
T Consensus 67 ~~~~---~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~ 104 (384)
T 1vgv_A 67 LTEI---TCRILEGLKPILAEFKPDVVLVHGDTTTTLATSL 104 (384)
T ss_dssp HHHH---HHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHH
Confidence 2221 2333344456777889999999986 44444333
No 6
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=93.06 E-value=0.39 Score=38.83 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhccc
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQM 69 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~ 69 (168)
+++|++++.|+.+|.+-+..+++.+..
T Consensus 7 ~~mkIl~v~~~~~~~~~~~~l~~~L~~ 33 (375)
T 3beo_A 7 ERLKVMTIFGTRPEAIKMAPLVLELQK 33 (375)
T ss_dssp SCEEEEEEECSHHHHHHHHHHHHHHTT
T ss_pred cCceEEEEecCcHHHHHHHHHHHHHHh
Confidence 358999999998888777788888764
No 7
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=92.42 E-value=0.58 Score=37.60 Aligned_cols=94 Identities=7% Similarity=-0.027 Sum_probs=51.2
Q ss_pred cEEEEEEc----CchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccC
Q 030992 45 LSTLIVLG----SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (168)
Q Consensus 45 ~kilvvLG----SGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~ 120 (168)
+|++++.. .||...-+.++.+.|...-++ .+.++...+.. . + ....++.+|..+.-+
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~-~------~-----------~~~~v~~~~~~~~~~ 61 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHH-VRVYTQSWEGD-C------P-----------KAFELIQVPVKSHTN 61 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCC-EEEEESEECSC-C------C-----------TTCEEEECCCCCSSH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCe-EEEEecCCCCC-C------C-----------CCcEEEEEccCcccc
Confidence 46777654 499888888998888755444 33333321111 0 0 124556666443211
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhheeee
Q 030992 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFFSSLV 163 (168)
Q Consensus 121 Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p~~~~ 163 (168)
.............++.+.+||+|++.+...++++.++
T Consensus 62 ------~~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~~~~ 98 (374)
T 2iw1_A 62 ------HGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFA 98 (374)
T ss_dssp ------HHHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSEEEC
T ss_pred ------hhhHHHHHHHHHHHHhccCCCEEEEecCCCCceeeec
Confidence 1111222222234556779999999987666665443
No 8
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=92.13 E-value=0.27 Score=42.05 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=58.6
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCch--hhHHHHHHHHHhhhhhhhccCCceEEEEecccccc
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDN--MSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREV 119 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~--~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV 119 (168)
.+++|+++|.|+=-...-|-.+++.++.+.......++..+.. ++.+-+..+. + + ..++ +.+.+.
T Consensus 25 m~~~kI~~v~Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~--i--~-----~~~~-l~v~~~--- 91 (403)
T 3ot5_A 25 MAKIKVMSIFGTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFD--I--K-----PDID-LDIMKK--- 91 (403)
T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTT--C--C-----CSEE-CCCCC----
T ss_pred cccceEEEEEecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcC--C--C-----CCcc-cccCCC---
Confidence 4457999999998777778888888874310123444555433 4443322111 0 0 0111 223222
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC-cchhheeeee
Q 030992 120 GQSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSL-ARVFFSSLVI 164 (168)
Q Consensus 120 ~Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~-~~~~p~~~~~ 164 (168)
+|+.. -.+...+.....++.++|||+|++.|. ...++.+++|
T Consensus 92 ~~~~~---~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA 134 (403)
T 3ot5_A 92 GQTLA---EITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLAT 134 (403)
T ss_dssp CCCHH---HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHH
T ss_pred CCCHH---HHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHH
Confidence 34443 235556666667888999999999886 3444444433
No 9
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=91.80 E-value=1.5 Score=36.04 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.5
Q ss_pred CCCcEEEEEEcC---chhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 42 PQPLSTLIVLGS---GGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 42 ~~~~kilvvLGS---GGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
.+++|++++..+ ||+..-+.++.+.+...-++ .++++...
T Consensus 38 ~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~-v~v~~~~~ 80 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIE-ARWFVIEG 80 (416)
T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCE-EEEEECCC
T ss_pred hhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCe-EEEEEccC
Confidence 356899988764 89988888888888755444 33444333
No 10
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=91.54 E-value=0.48 Score=40.22 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=59.1
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCc
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ 121 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Q 121 (168)
++.+|+++|.|.==...-|-.+++.++.+. .....++..+...+.. .+..+...-+ ..+ -+.+.+ -+|
T Consensus 23 ~~m~ki~~v~Gtr~~~~~~a~li~~l~~~~-~~~~~~~~tG~h~~~~--~~~~~~~~i~-----~~~-~l~~~~---~~~ 90 (396)
T 3dzc_A 23 NAMKKVLIVFGTRPEAIKMAPLVQQLCQDN-RFVAKVCVTGQHREML--DQVLELFSIT-----PDF-DLNIME---PGQ 90 (396)
T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHHCT-TEEEEEEECCSSSHHH--HHHHHHTTCC-----CSE-ECCCCC---TTC
T ss_pred CCCCeEEEEEeccHhHHHHHHHHHHHHhCC-CCcEEEEEecccHHHH--HHHHHhcCCC-----Cce-eeecCC---CCC
Confidence 455799999999877777888888887431 1234445444443211 1111111100 011 222322 234
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcch-hheeeee
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARV-FFSSLVI 164 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~-~p~~~~~ 164 (168)
+... .+...+.....++.++|||+|++.|.-.. +|..++|
T Consensus 91 ~~~~---~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa 131 (396)
T 3dzc_A 91 TLNG---VTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAA 131 (396)
T ss_dssp CHHH---HHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHH
T ss_pred CHHH---HHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHH
Confidence 4433 34556666667888999999999885433 5544433
No 11
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=91.32 E-value=1 Score=37.24 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred CCCCCCcEEEEE-EcCchhHHHHHHhHHhcccCCCCceEEEEeCCc
Q 030992 39 LKSPQPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (168)
Q Consensus 39 ~~~~~~~kilvv-LGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD 83 (168)
+..++.+|++++ .|++||..=|+.|.+.|...- +...+++..+
T Consensus 15 ~~~~~m~rIl~~~~~~~GHv~p~l~La~~L~~~G--h~V~v~~~~~ 58 (415)
T 3rsc_A 15 IEGRHMAHLLIVNVASHGLILPTLTVVTELVRRG--HRVSYVTAGG 58 (415)
T ss_dssp ----CCCEEEEECCSCHHHHGGGHHHHHHHHHTT--CEEEEEECGG
T ss_pred cCcccCCEEEEEeCCCccccccHHHHHHHHHHCC--CEEEEEeCHH
Confidence 334455788765 677899999999999997543 3444444443
No 12
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=90.86 E-value=0.78 Score=37.97 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=27.0
Q ss_pred CCCcEEEEE-EcCchhHHHHHHhHHhcccCCCCceEEEEe
Q 030992 42 PQPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (168)
Q Consensus 42 ~~~~kilvv-LGSGGHT~EMl~LL~~l~~~~y~~rtyvv~ 80 (168)
.+.+|++++ .|++||..-|+.|.+.|...-.+ .+++..
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~Ghe-V~v~~~ 56 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHD-VLIAVA 56 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCE-EEEEES
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCE-EEEecc
Confidence 455899877 58899999999999999854333 334433
No 13
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=90.34 E-value=0.71 Score=38.12 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=23.9
Q ss_pred CCCCcEEEEE-EcCchhHHHHHHhHHhcccCCC
Q 030992 41 SPQPLSTLIV-LGSGGHTAEMMNLLSVLQMDRF 72 (168)
Q Consensus 41 ~~~~~kilvv-LGSGGHT~EMl~LL~~l~~~~y 72 (168)
++..+|++++ .|++||..-|+.|.+.|...-.
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~Gh 44 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAGH 44 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTTC
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCCC
Confidence 3456899877 6889999999999999985433
No 14
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=90.26 E-value=1.3 Score=36.11 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCcEEEEEEc------CchhHHHHHHhHHhcccCCCCceEEEEe
Q 030992 43 QPLSTLIVLG------SGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (168)
Q Consensus 43 ~~~kilvvLG------SGGHT~EMl~LL~~l~~~~y~~rtyvv~ 80 (168)
||+|+++|.. .||-..-+.+|.+.|...-++ .+.++.
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~-V~v~~~ 43 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHE-VLVFTP 43 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCe-EEEEec
Confidence 5789999983 599888888888888754444 444443
No 15
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=89.28 E-value=1.5 Score=35.56 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=17.8
Q ss_pred cEEEEEEcCchhHHHHHHhHHhccc
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQM 69 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~ 69 (168)
+|++++.|+.++..-+..+++.+..
T Consensus 6 mkIl~v~~~~~~~~~~~~l~~~L~~ 30 (376)
T 1v4v_A 6 KRVVLAFGTRPEATKMAPVYLALRG 30 (376)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHh
Confidence 6899999876555555667777763
No 16
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=87.31 E-value=2.8 Score=34.22 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=21.9
Q ss_pred CcEEEEEE-cCchhHHHHHHhHHhcccC
Q 030992 44 PLSTLIVL-GSGGHTAEMMNLLSVLQMD 70 (168)
Q Consensus 44 ~~kilvvL-GSGGHT~EMl~LL~~l~~~ 70 (168)
++|++++. |.+||..-|+.|.+.|...
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~ 28 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQAS 28 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHC
Confidence 36887665 8899999999999998744
No 17
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=87.19 E-value=3.9 Score=34.16 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=25.6
Q ss_pred cEEEEE-EcCchhHHHHHHhHHhcccCCCCceEEEEeCCc
Q 030992 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (168)
Q Consensus 45 ~kilvv-LGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD 83 (168)
+|++++ .||.||..=|+.|-+.|...-. ...+++..|
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh--~V~v~~~~~ 38 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGA--DARMCLPPD 38 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTC--CEEEEECGG
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCC--eEEEEeCHH
Confidence 466555 7999999999999999975433 334444444
No 18
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=86.99 E-value=2.3 Score=35.51 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=23.7
Q ss_pred cEEEE-EEcCchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 45 LSTLI-VLGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 45 ~kilv-vLGSGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
+|+++ -.|++||..=|+.|.+.|...-.+ .+|+.
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~-V~~~~ 35 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGAD-VRMCA 35 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCE-EEEEE
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCe-EEEEc
Confidence 35655 457889999999999999854333 44443
No 19
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=86.96 E-value=1.1 Score=36.94 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=23.0
Q ss_pred CCCCCcEEEEEE------------cCchhHHHHHHhHHhcccCCCC
Q 030992 40 KSPQPLSTLIVL------------GSGGHTAEMMNLLSVLQMDRFT 73 (168)
Q Consensus 40 ~~~~~~kilvvL------------GSGGHT~EMl~LL~~l~~~~y~ 73 (168)
...+.+||+++. +.||+..-+.++.+.|...-++
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~ 61 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIE 61 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCE
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCE
Confidence 345678999998 4699999999999988754444
No 20
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=86.88 E-value=2.6 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=23.9
Q ss_pred EEE-EEEcCchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 46 STL-IVLGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 46 kil-vvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
|++ +..|++||..=|+.|.+.|...-.+ .+++.
T Consensus 2 rIl~~~~~~~GH~~p~l~la~~L~~~Gh~-V~~~~ 35 (416)
T 1rrv_A 2 RVLLSVCGTRGDVEIGVALADRLKALGVQ-TRMCA 35 (416)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHTTCE-EEEEE
T ss_pred eEEEEecCCCccHHHHHHHHHHHHHCCCe-EEEEe
Confidence 554 4678999999999999999854333 44444
No 21
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=86.63 E-value=0.96 Score=36.24 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCcEEEEEEcC-----------------chhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 43 QPLSTLIVLGS-----------------GGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 43 ~~~kilvvLGS-----------------GGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
+++|++++..+ ||...-..++.+.|...-+ ...++...
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~--~v~v~~~~ 56 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGH--EVFLLGAP 56 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTC--EEEEESCT
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCC--eEEEEecC
Confidence 35899999877 9988888888888874433 34444433
No 22
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=86.02 E-value=0.39 Score=39.13 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCCCcEEEEEEcC-----chhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 41 SPQPLSTLIVLGS-----GGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 41 ~~~~~kilvvLGS-----GGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
..+++|++++... ||+..-+.++.+.|...-++ ..++...
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~--V~v~~~~ 61 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHE--VSVLAPA 61 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCE--EEEEESC
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCe--EEEEecC
Confidence 4567899999853 99988889998988854444 3444443
No 23
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=86.01 E-value=3.3 Score=34.35 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=20.9
Q ss_pred cEEEEEE-cCchhHHHHHHhHHhcccCC
Q 030992 45 LSTLIVL-GSGGHTAEMMNLLSVLQMDR 71 (168)
Q Consensus 45 ~kilvvL-GSGGHT~EMl~LL~~l~~~~ 71 (168)
+|++++- +++||..=|+.|.+.|...-
T Consensus 8 ~kIl~~~~~~~Gh~~p~~~la~~L~~~G 35 (430)
T 2iyf_A 8 AHIAMFSIAAHGHVNPSLEVIRELVARG 35 (430)
T ss_dssp CEEEEECCSCHHHHGGGHHHHHHHHHTT
T ss_pred ceEEEEeCCCCccccchHHHHHHHHHCC
Confidence 5787654 57799999999999987543
No 24
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=83.95 E-value=1.8 Score=36.86 Aligned_cols=38 Identities=11% Similarity=-0.048 Sum_probs=26.9
Q ss_pred CCcEEEEEEc----------------CchhHHHHHHhHHhcccCCCCceEEEEeC
Q 030992 43 QPLSTLIVLG----------------SGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (168)
Q Consensus 43 ~~~kilvvLG----------------SGGHT~EMl~LL~~l~~~~y~~rtyvv~~ 81 (168)
+++||++|.. .||+..-+.++.+.|...-++ .+.++..
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~-V~v~~~~ 59 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQ-VDIITRR 59 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCE-EEEEEEC
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCe-EEEEeCC
Confidence 3589999984 599999999999998855444 3444433
No 25
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=83.13 E-value=3.2 Score=34.87 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=25.1
Q ss_pred CCcEEEEE-EcCchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 43 QPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 43 ~~~kilvv-LGSGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
..+|++++ .|++||..=|+.+.+.|...-++ .+|+.
T Consensus 19 ~~mrIl~~~~~~~GHv~p~l~la~~L~~~Ghe-V~~~~ 55 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHE-VRVVA 55 (441)
T ss_dssp CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCE-EEEEE
T ss_pred CccEEEEEcCCCcchHhHHHHHHHHHHHCCCe-EEEEe
Confidence 44788766 45679999999999999854333 44443
No 26
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=81.26 E-value=8.1 Score=31.21 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.0
Q ss_pred EEEEE-EcCchhHHHHHHhHHhcccCC
Q 030992 46 STLIV-LGSGGHTAEMMNLLSVLQMDR 71 (168)
Q Consensus 46 kilvv-LGSGGHT~EMl~LL~~l~~~~ 71 (168)
|++++ .|+.||..=|+.|.+.|...-
T Consensus 6 ~il~~~~~~~Ghv~~~~~La~~L~~~G 32 (402)
T 3ia7_A 6 HILFANVQGHGHVYPSLGLVSELARRG 32 (402)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCcccccHHHHHHHHHhCC
Confidence 77655 677899999999999998543
No 27
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=75.82 E-value=9.5 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=19.9
Q ss_pred cEEEE-EEcCchhHHHHHHhHHhcccC
Q 030992 45 LSTLI-VLGSGGHTAEMMNLLSVLQMD 70 (168)
Q Consensus 45 ~kilv-vLGSGGHT~EMl~LL~~l~~~ 70 (168)
+|+++ ..|++||..-|+.|.+.|...
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~ 27 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNA 27 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHC
Confidence 35655 456789999999999999744
No 28
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=75.43 E-value=7.2 Score=33.01 Aligned_cols=103 Identities=12% Similarity=0.172 Sum_probs=57.0
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHH-HHHhhhhhhhccCCceEEEEeccccccCcc
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARV-FEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~-~e~~~~~~~~~~~~~~~~~~ipRaReV~Qs 122 (168)
-+|+|+|.|+==-..=|-.+++.++.+ ++ ..++..+...... ..+ +.+... . +...+...+ -+||
T Consensus 9 ~~~~~~v~GtRpe~~k~~p~~~~l~~~-~~--~~~~~tgqh~~~~-~~~~~~~~~~----i-~~~~~~l~~-----~~~~ 74 (385)
T 4hwg_A 9 MLKVMTIVGTRPELIKLCCVISEFDKH-TK--HILVHTGQNYAYE-LNQVFFDDMG----I-RKPDYFLEV-----AADN 74 (385)
T ss_dssp CCEEEEEECSHHHHHHHHHHHHHHHHH-SE--EEEEECSCHHHHH-HTHHHHC-CC----C-CCCSEECCC-----CCCC
T ss_pred hhheeEEEEcCHhHHHHHHHHHHHHhc-CC--EEEEEeCCCCChh-HHHHHHhhCC----C-CCCceecCC-----CCCC
Confidence 469999999988888888888888854 44 3444444332110 011 111100 0 001111122 1454
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC-cchhheeeee
Q 030992 123 YVTSVWTTLLATTHALWLMVKIRPQVVMNLSL-ARVFFSSLVI 164 (168)
Q Consensus 123 ~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~-~~~~p~~~~~ 164 (168)
. .-++...+...-.++.++|||+|++.|. ....+ .++|
T Consensus 75 ~---~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA 113 (385)
T 4hwg_A 75 T---AKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLS-AIAA 113 (385)
T ss_dssp S---HHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGG-HHHH
T ss_pred H---HHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHH-HHHH
Confidence 3 2344455556667788999999999985 34444 4444
No 29
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=74.23 E-value=26 Score=28.84 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=24.1
Q ss_pred CcEEEEEE-cCchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 44 PLSTLIVL-GSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 44 ~~kilvvL-GSGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
.+|++++- ++.||..=|+.|.+.|...-++ .+++.
T Consensus 12 ~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~-V~~~~ 47 (424)
T 2iya_A 12 PRHISFFNIPGHGHVNPSLGIVQELVARGHR-VSYAI 47 (424)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHTTCE-EEEEE
T ss_pred cceEEEEeCCCCcccchHHHHHHHHHHCCCe-EEEEe
Confidence 45777653 4569999999999999854333 44443
No 30
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=69.37 E-value=7.2 Score=31.67 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCCcEEEEE-EcCchhHHHHHHhHHhcccCCCCceEEEE
Q 030992 42 PQPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (168)
Q Consensus 42 ~~~~kilvv-LGSGGHT~EMl~LL~~l~~~~y~~rtyvv 79 (168)
.+++||+++ .|+.||..=|+.|-+.|...=.+ .++++
T Consensus 20 ~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~-Vt~~t 57 (400)
T 4amg_A 20 FQSMRALFITSPGLSHILPTVPLAQALRALGHE-VRYAT 57 (400)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCE-EEEEE
T ss_pred CCCCeEEEECCCchhHHHHHHHHHHHHHHCCCE-EEEEe
Confidence 467899865 57889999999999999854333 45544
No 31
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Probab=68.20 E-value=5.3 Score=30.72 Aligned_cols=19 Identities=26% Similarity=0.739 Sum_probs=17.5
Q ss_pred EEEEcCchhHHHHHHhHHh
Q 030992 48 LIVLGSGGHTAEMMNLLSV 66 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~ 66 (168)
+++.|.|||-.|+++.|+.
T Consensus 15 v~IiGAGg~g~~v~~~l~~ 33 (220)
T 4ea9_A 15 VVIIGGGGHAKVVIESLRA 33 (220)
T ss_dssp EEEECCSHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHh
Confidence 6789999999999999986
No 32
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=64.80 E-value=28 Score=29.72 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=23.3
Q ss_pred CCCCcEEEEEEcC---chhHHHHHHhHHh--cccCCCC
Q 030992 41 SPQPLSTLIVLGS---GGHTAEMMNLLSV--LQMDRFT 73 (168)
Q Consensus 41 ~~~~~kilvvLGS---GGHT~EMl~LL~~--l~~~~y~ 73 (168)
.++++||++|.++ ||-..-++.+++. ++...++
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~ 239 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQ 239 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEE
Confidence 4678999999864 5555557788888 6755544
No 33
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=60.47 E-value=7.7 Score=28.92 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=19.2
Q ss_pred cEEEEEEcCchhHHHHHHhHHh
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~ 66 (168)
+|+++|.||.|+|..|.+.+..
T Consensus 5 mkilii~~S~g~T~~la~~i~~ 26 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGK 26 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEEeCccHHHHHHHHHHH
Confidence 6899999999999999887654
No 34
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=57.89 E-value=20 Score=27.45 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=41.4
Q ss_pred CcEEEEEEcCch--hHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEecccccc
Q 030992 44 PLSTLIVLGSGG--HTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREV 119 (168)
Q Consensus 44 ~~kilvvLGSGG--HT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV 119 (168)
.-|+++++.+|+ +..|+..+.+.+... ..+.|+++-++....+..+++-+... ..++..+..+|-.+++
T Consensus 106 ~~riiil~~~~~~~~~~~~~~~a~~lk~~--gi~v~~Ig~G~~~~~~~l~~la~~~n-----~~~~s~~~~~~~~~~~ 176 (192)
T 2x5n_A 106 RQRIVAFVGSPIVEDEKNLIRLAKRMKKN--NVAIDIIHIGELQNESALQHFIDAAN-----SSDSCHLVSIPPSPQL 176 (192)
T ss_dssp EEEEEEEECSCCSSCHHHHHHHHHHHHHT--TEEEEEEEESCC---CHHHHHHHHHC-----STTCCEEEEECCCSSC
T ss_pred CceEEEEEECCCCCCchhHHHHHHHHHHC--CCEEEEEEeCCCCccHHHHHHHHhcc-----CCCceEEEEecCcchh
Confidence 347888887776 568888888888743 35778887665432211333332221 1134667799988875
No 35
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A
Probab=53.28 E-value=12 Score=28.32 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=14.8
Q ss_pred EEEEcCchhHHHHHHhHHh
Q 030992 48 LIVLGSGGHTAEMMNLLSV 66 (168)
Q Consensus 48 lvvLGSGGHT~EMl~LL~~ 66 (168)
++++|.|||-.|.+.++..
T Consensus 6 ~~I~Gagg~gk~v~~~~~~ 24 (194)
T 3bfp_A 6 IYIYGASGHGLVCEDVAKN 24 (194)
T ss_dssp EEEEC--CHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHh
Confidence 7889999999999998754
No 36
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=51.52 E-value=13 Score=25.96 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.6
Q ss_pred EEEEEEcCchhHHHHHHhHHhc
Q 030992 46 STLIVLGSGGHTAEMMNLLSVL 67 (168)
Q Consensus 46 kilvvLGSGGHT~EMl~LL~~l 67 (168)
+=.++.|+|+|..++.+.++.-
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~ 26 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQG 26 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4577899999999999998763
No 37
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=45.85 E-value=1.1e+02 Score=24.00 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCC-chhhHHHHHHHHHhhhhhhhccCCceEEEEecc----
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAAT-DNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYR---- 115 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~t-D~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipR---- 115 (168)
..+.|+.|+.+-.||.. ..+++.+...... ....|+++. |.--.+++++ .+..++.+++
T Consensus 5 m~~~ri~vl~SG~gsnl--~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~-------------~gIp~~~~~~~~~~ 69 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNM--EALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEA-------------AGIATQVFKRKDFA 69 (209)
T ss_dssp -CCEEEEEEESSCCHHH--HHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHH-------------TTCCEEECCGGGSS
T ss_pred CCCccEEEEEECCcHHH--HHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHH-------------cCCCEEEeCccccC
Confidence 44568877766667764 4556665533322 245666654 4433333321 1233444443
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 116 SREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 116 aReV~Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
.|+- |=.. -+-.+...+||++++-|=+--+|
T Consensus 70 ~r~~---~d~~----------~~~~l~~~~~Dliv~agy~~il~ 100 (209)
T 4ds3_A 70 SKEA---HEDA----------ILAALDVLKPDIICLAGYMRLLS 100 (209)
T ss_dssp SHHH---HHHH----------HHHHHHHHCCSEEEESSCCSCCC
T ss_pred CHHH---HHHH----------HHHHHHhcCCCEEEEeccccCcC
Confidence 2321 1011 11233456899999998765544
No 38
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=45.82 E-value=1.3e+02 Score=24.94 Aligned_cols=91 Identities=10% Similarity=0.115 Sum_probs=46.4
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCc
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ 121 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Q 121 (168)
++.|+.|+.+-.|| -|..|+......... ....|+++-+.. .+.++ + .+.-++.+|....-.+
T Consensus 104 ~~~ri~vl~Sg~g~--nl~~ll~~~~~g~l~~~I~~Visn~~~~-~~~A~----~---------~gIp~~~~~~~~~~r~ 167 (302)
T 3o1l_A 104 QKKRVVLMASRESH--CLADLLHRWHSDELDCDIACVISNHQDL-RSMVE----W---------HDIPYYHVPVDPKDKE 167 (302)
T ss_dssp SCCEEEEEECSCCH--HHHHHHHHHHTTCSCSEEEEEEESSSTT-HHHHH----T---------TTCCEEECCCCSSCCH
T ss_pred CCcEEEEEEeCCch--hHHHHHHHHHCCCCCcEEEEEEECcHHH-HHHHH----H---------cCCCEEEcCCCcCCHH
Confidence 45677666555576 467777776543332 255666655333 11111 1 1244566654322111
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
.+-..+ +..+...+||++++-|=+--+|
T Consensus 168 ~~~~~~----------~~~l~~~~~DliVlagym~IL~ 195 (302)
T 3o1l_A 168 PAFAEV----------SRLVGHHQADVVVLARYMQILP 195 (302)
T ss_dssp HHHHHH----------HHHHHHTTCSEEEESSCCSCCC
T ss_pred HHHHHH----------HHHHHHhCCCEEEHhHhhhhcC
Confidence 111111 1233457899999998765554
No 39
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=45.75 E-value=20 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=20.2
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhc
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVL 67 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l 67 (168)
.+++|++++|++|+=|+=|.+=++..
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~ 29 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEG 29 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999887776666653
No 40
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=45.31 E-value=7.1 Score=32.68 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=12.7
Q ss_pred EEEcCchhHHHHHHh
Q 030992 49 IVLGSGGHTAEMMNL 63 (168)
Q Consensus 49 vvLGSGGHT~EMl~L 63 (168)
.=+|.||||.++++.
T Consensus 29 ~T~G~GGHS~~il~~ 43 (285)
T 1wg8_A 29 ATLGGAGHARGILER 43 (285)
T ss_dssp TTCTTSHHHHHHHHT
T ss_pred eCCCCcHHHHHHHHC
Confidence 348999999999885
No 41
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=44.96 E-value=16 Score=27.49 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=18.7
Q ss_pred CCcEEEEEEcCc-hhHHHHHHhHHh
Q 030992 43 QPLSTLIVLGSG-GHTAEMMNLLSV 66 (168)
Q Consensus 43 ~~~kilvvLGSG-GHT~EMl~LL~~ 66 (168)
..+|++||.||. |||..|.+.+..
T Consensus 5 ~~~kiliiy~S~~GnT~~lA~~ia~ 29 (193)
T 3d7n_A 5 SSSNTVVVYHSGYGHTHRMAEAVAE 29 (193)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHH
Confidence 346898888886 999999987765
No 42
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=43.52 E-value=16 Score=25.77 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=21.6
Q ss_pred CCCcEEEEEEcCchhHHHH--HHhHHhcccCCCC
Q 030992 42 PQPLSTLIVLGSGGHTAEM--MNLLSVLQMDRFT 73 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EM--l~LL~~l~~~~y~ 73 (168)
.+..|+++|||+|==|+.| .++-+.++....+
T Consensus 19 ~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~ 52 (113)
T 1tvm_A 19 GSKRKIIVACGGAVATSTMAAEEIKELCQSHNIP 52 (113)
T ss_dssp CSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 4567999999999888887 3443445533343
No 43
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=43.03 E-value=1.4e+02 Score=24.53 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=46.7
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccCc
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ 121 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~Q 121 (168)
++.|+.|+.+-.|| -|..|+......... ....|+++-+..- ..++ + .+.-++.+|...+-..
T Consensus 94 ~~~ri~vl~Sg~g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~-~~A~---~----------~gIp~~~~~~~~~~r~ 157 (292)
T 3lou_A 94 ARPKVLIMVSKLEH--CLADLLFRWKMGELKMDIVGIVSNHPDFA-PLAA---Q----------HGLPFRHFPITADTKA 157 (292)
T ss_dssp SCCEEEEEECSCCH--HHHHHHHHHHHTSSCCEEEEEEESSSTTH-HHHH---H----------TTCCEEECCCCSSCHH
T ss_pred CCCEEEEEEcCCCc--CHHHHHHHHHcCCCCcEEEEEEeCcHHHH-HHHH---H----------cCCCEEEeCCCcCCHH
Confidence 35577666555576 466777766543332 2556777664431 1111 1 1244666665322111
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 122 SYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 122 s~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
.|=. .-+..+...+||++++-|=+--+|
T Consensus 158 ~~~~----------~~~~~l~~~~~Dlivla~y~~il~ 185 (292)
T 3lou_A 158 QQEA----------QWLDVFETSGAELVILARYMQVLS 185 (292)
T ss_dssp HHHH----------HHHHHHHHHTCSEEEESSCCSCCC
T ss_pred HHHH----------HHHHHHHHhCCCEEEecCchhhCC
Confidence 1100 112233456899999998765544
No 44
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=42.66 E-value=89 Score=26.64 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=27.1
Q ss_pred CcEEEEEE-cCchhHHHHHHhHHhcccC--CCCceEEEEeCC
Q 030992 44 PLSTLIVL-GSGGHTAEMMNLLSVLQMD--RFTPRFYIAAAT 82 (168)
Q Consensus 44 ~~kilvvL-GSGGHT~EMl~LL~~l~~~--~y~~rtyvv~~t 82 (168)
+.|++++- +++||..=|++|-+.|-.. -+. .|+++...
T Consensus 9 ~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~-Vt~v~t~~ 49 (463)
T 2acv_A 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLY-ITVFCIKF 49 (463)
T ss_dssp CEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEE-EEEEECCC
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhcCCCcE-EEEEEcCC
Confidence 35776554 8999999999999998744 333 56665443
No 45
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=41.49 E-value=21 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.2
Q ss_pred CcEEEEEEcC---chhHHHHHHhHHh
Q 030992 44 PLSTLIVLGS---GGHTAEMMNLLSV 66 (168)
Q Consensus 44 ~~kilvvLGS---GGHT~EMl~LL~~ 66 (168)
++|+++|.|| +|.|..|.+.+..
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~ 31 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIG 31 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCChHHHHHHHHHH
Confidence 4799999999 6999999987654
No 46
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=40.88 E-value=73 Score=22.81 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=33.5
Q ss_pred cEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHH
Q 030992 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQ 88 (168)
Q Consensus 45 ~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~ 88 (168)
-+++++..----..||+.|++.+. |. .+....+.|...++
T Consensus 52 ekiliisndkqllkemlelisklg---yk-vflllqdqdenele 91 (134)
T 2lci_A 52 EKILIISNDKQLLKEMLELISKLG---YK-VFLLLQDQDENELE 91 (134)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHT---CC-EEEEEECSCHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHHHhC---ce-eEEEeecCchhHHH
Confidence 388999888889999999999987 55 77788888988763
No 47
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=39.93 E-value=20 Score=28.92 Aligned_cols=18 Identities=0% Similarity=-0.208 Sum_probs=14.0
Q ss_pred HHHHhhcCCcEEEeCCCc
Q 030992 138 LWLMVKIRPQVVMNLSLA 155 (168)
Q Consensus 138 l~il~r~rPdviL~~G~~ 155 (168)
..++.+.+||+|.++++.
T Consensus 92 ~~~l~~~~~Dvv~~~~~~ 109 (394)
T 2jjm_A 92 AEVAQRENLDILHVHYAI 109 (394)
T ss_dssp HHHHHHHTCSEEEECSST
T ss_pred HHHHHHcCCCEEEEcchh
Confidence 345567899999999765
No 48
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=39.91 E-value=1.1e+02 Score=24.17 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=15.2
Q ss_pred cEEEEEEcCc-h---hHHHHHHhHHh
Q 030992 45 LSTLIVLGSG-G---HTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGSG-G---HT~EMl~LL~~ 66 (168)
+|++|+-+++ | |+.-+++.|+.
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~ 26 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQA 26 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHH
Confidence 4789998887 4 66666666655
No 49
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=38.21 E-value=7.1 Score=33.65 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=15.7
Q ss_pred CcEEEEEEcCchhHHHHHHhH
Q 030992 44 PLSTLIVLGSGGHTAEMMNLL 64 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL 64 (168)
.+-+=.=+|.||||.++++.+
T Consensus 59 giyVD~TlG~GGHS~~iL~~l 79 (347)
T 3tka_A 59 GIYIDGTFGRGGHSRLILSQL 79 (347)
T ss_dssp CEEEESCCTTSHHHHHHHTTC
T ss_pred CEEEEeCcCCCHHHHHHHHhC
Confidence 344446789999999988664
No 50
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=36.82 E-value=1.5e+02 Score=23.19 Aligned_cols=88 Identities=9% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCC-chhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccC
Q 030992 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAAT-DNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~t-D~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~ 120 (168)
++.|+.|+.+-.||. |..+++.+....+. ....|+++. |.--.+++++. +.-++.+++. +..
T Consensus 7 ~~~ri~vl~SG~gsn--l~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~-------------gIp~~~~~~~-~~~ 70 (215)
T 3kcq_A 7 KELRVGVLISGRGSN--LEALAKAFSTEESSVVISCVISNNAEARGLLIAQSY-------------GIPTFVVKRK-PLD 70 (215)
T ss_dssp CCEEEEEEESSCCHH--HHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHT-------------TCCEEECCBT-TBC
T ss_pred CCCEEEEEEECCcHH--HHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHc-------------CCCEEEeCcc-cCC
Confidence 456887766666776 44566666543332 245666653 44433333221 2334444432 111
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 121 Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
+ -.-+-.+...+||++++-|=+--+|
T Consensus 71 -----~--------~~~~~~L~~~~~Dlivlagy~~IL~ 96 (215)
T 3kcq_A 71 -----I--------EHISTVLREHDVDLVCLAGFMSILP 96 (215)
T ss_dssp -----H--------HHHHHHHHHTTCSEEEESSCCSCCC
T ss_pred -----h--------HHHHHHHHHhCCCEEEEeCCceEeC
Confidence 1 1112334467899999998765554
No 51
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=35.52 E-value=33 Score=25.69 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=19.7
Q ss_pred CcEEEEEEcC-chhHHHHHHhHHh-cc
Q 030992 44 PLSTLIVLGS-GGHTAEMMNLLSV-LQ 68 (168)
Q Consensus 44 ~~kilvvLGS-GGHT~EMl~LL~~-l~ 68 (168)
.+|+++|.|| .|+|..|.+.+.. +.
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~ 32 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGR 32 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHh
Confidence 4689999998 6999999887654 44
No 52
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=35.25 E-value=29 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=18.9
Q ss_pred cEEEEEEcC---chhHHHHHHhHHh
Q 030992 45 LSTLIVLGS---GGHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGS---GGHT~EMl~LL~~ 66 (168)
+|+++|.|| +|+|..|.+.+..
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~ 27 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALA 27 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCChHHHHHHHHHH
Confidence 489999999 7999999997744
No 53
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Probab=32.63 E-value=21 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=20.0
Q ss_pred HHHHhhccCCCCCCCCCCCcEEEEEEcCchhH
Q 030992 26 LLHVLYLTGKSRRLKSPQPLSTLIVLGSGGHT 57 (168)
Q Consensus 26 l~~vl~~~~~~~~~~~~~~~kilvvLGSGGHT 57 (168)
++.++|....|..+...+..+.|.|-|+||+-
T Consensus 78 l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL 109 (298)
T 2wnf_A 78 LFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNL 109 (298)
T ss_dssp HTTTSCSCCCTTTTGGGCSCCEEEEECCBGGG
T ss_pred HHHhCCCccccccccccCCCCeEEEECCcccc
Confidence 44455543322322234678999999999974
No 54
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=32.56 E-value=36 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.4
Q ss_pred cEEEEEEcC-chhHHHHHHhHHh-cc
Q 030992 45 LSTLIVLGS-GGHTAEMMNLLSV-LQ 68 (168)
Q Consensus 45 ~kilvvLGS-GGHT~EMl~LL~~-l~ 68 (168)
+|+++|.|| .|+|..|.+.+.. +.
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~ 27 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGAS 27 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHh
Confidence 378888888 6899999887654 54
No 55
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=32.07 E-value=32 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.5
Q ss_pred cEEEEEEcC---chhHHHHHHhHHh
Q 030992 45 LSTLIVLGS---GGHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGS---GGHT~EMl~LL~~ 66 (168)
+|++++.|| +|+|..|.+.+..
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~ 28 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ 28 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc
Confidence 689999999 5999999987764
No 56
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=30.81 E-value=63 Score=22.34 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=18.1
Q ss_pred CcEEEEEEcCchhHHHHHHhHHh
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSV 66 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~ 66 (168)
..|++++||+|-=|+-|.+=++.
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~ 25 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRA 25 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHH
T ss_pred CcEEEEECCCchhHHHHHHHHHH
Confidence 35899999999999966665554
No 57
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=29.87 E-value=40 Score=23.35 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=19.3
Q ss_pred CCCcEEEEEEcCchhHHHHHH-hHHh-cc
Q 030992 42 PQPLSTLIVLGSGGHTAEMMN-LLSV-LQ 68 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~-LL~~-l~ 68 (168)
++..|++++||+|==|+.|++ -|+. ++
T Consensus 16 ~~~~kIlvvC~sG~gTS~m~~~kl~~~~~ 44 (110)
T 3czc_A 16 GSMVKVLTACGNGMGSSMVIKMKVENALR 44 (110)
T ss_dssp --CEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHHHHH
Confidence 345789999999977777877 5554 44
No 58
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=29.62 E-value=2.3e+02 Score=23.08 Aligned_cols=92 Identities=9% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccC
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~ 120 (168)
+++.|+.|+.+-.|| -+..|++........ ....|+++-+..- +.++ + .+.-++.+|...+-.
T Consensus 88 ~~~~ri~vl~Sg~g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~-~~A~---~----------~gIp~~~~~~~~~~r 151 (286)
T 3n0v_A 88 NHRPKVVIMVSKADH--CLNDLLYRQRIGQLGMDVVAVVSNHPDLE-PLAH---W----------HKIPYYHFALDPKDK 151 (286)
T ss_dssp TCCCEEEEEESSCCH--HHHHHHHHHHTTSSCCEEEEEEESSSTTH-HHHH---H----------TTCCEEECCCBTTBH
T ss_pred CCCcEEEEEEeCCCC--CHHHHHHHHHCCCCCcEEEEEEeCcHHHH-HHHH---H----------cCCCEEEeCCCcCCH
Confidence 445677665555566 455667765533332 2556777665431 1111 1 124466666532110
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 121 Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
..|=. .-+..+...+||++++-|=+--+|
T Consensus 152 ~~~~~----------~~~~~l~~~~~Dlivla~y~~il~ 180 (286)
T 3n0v_A 152 PGQER----------KVLQVIEETGAELVILARYMQVLS 180 (286)
T ss_dssp HHHHH----------HHHHHHHHHTCSEEEESSCCSCCC
T ss_pred HHHHH----------HHHHHHHhcCCCEEEecccccccC
Confidence 11100 112334456899999998765544
No 59
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.81 E-value=53 Score=26.15 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.8
Q ss_pred CCCcEEEEEEcC---chhHHHHHHhHH
Q 030992 42 PQPLSTLIVLGS---GGHTAEMMNLLS 65 (168)
Q Consensus 42 ~~~~kilvvLGS---GGHT~EMl~LL~ 65 (168)
...+|+++|.|| +|+|..|.+.+.
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~ 58 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEAR 58 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHH
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHH
Confidence 456799999999 799999988544
No 60
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=28.15 E-value=47 Score=24.30 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=17.5
Q ss_pred cEEEEEEcC-chhHHHHHHhHHh
Q 030992 45 LSTLIVLGS-GGHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGS-GGHT~EMl~LL~~ 66 (168)
+|++||.|| .|+|..|.+.+..
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~ 28 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIAR 28 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCChHHHHHHHHHH
Confidence 389999988 6899998886654
No 61
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=27.25 E-value=2.2e+02 Score=22.19 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=14.7
Q ss_pred HHhhcCCcEEEeCCCcchhh
Q 030992 140 LMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 140 il~r~rPdviL~~G~~~~~p 159 (168)
.+...+||++++-|=+--+|
T Consensus 78 ~l~~~~~Dliv~agy~~il~ 97 (215)
T 3tqr_A 78 TIDHYDPKLIVLAGFMRKLG 97 (215)
T ss_dssp HHHTTCCSEEEESSCCSCCC
T ss_pred HHHhcCCCEEEEccchhhCC
Confidence 44567899999998765444
No 62
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=27.10 E-value=2.2e+02 Score=22.02 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=15.1
Q ss_pred HHhhcCCcEEEeCCCcchhh
Q 030992 140 LMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 140 il~r~rPdviL~~G~~~~~p 159 (168)
.+...+||++++-|=+--+|
T Consensus 74 ~l~~~~~Dliv~agy~~il~ 93 (212)
T 1jkx_A 74 EIDMYAPDVVVLAGFMRILS 93 (212)
T ss_dssp HHGGGCCSEEEESSCCSCCC
T ss_pred HHHhcCCCEEEEeChhhhCC
Confidence 34567899999999775554
No 63
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.81 E-value=19 Score=24.97 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=14.4
Q ss_pred CcEEEEEEcCchhHHHHHH
Q 030992 44 PLSTLIVLGSGGHTAEMMN 62 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~ 62 (168)
.+|++++||+|-=|+ |+.
T Consensus 4 ~mkIlvvC~~G~~TS-ll~ 21 (109)
T 2l2q_A 4 SMNILLVCGAGMSTS-MLV 21 (109)
T ss_dssp CEEEEEESSSSCSSC-HHH
T ss_pred ceEEEEECCChHhHH-HHH
Confidence 378999999998777 543
No 64
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=26.35 E-value=54 Score=22.85 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=15.5
Q ss_pred cEEEEEEcCc-hhHHHHHHhHHh
Q 030992 45 LSTLIVLGSG-GHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGSG-GHT~EMl~LL~~ 66 (168)
+|++|+.||. |+|..|-+.+..
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~ 23 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIAR 23 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHH
T ss_pred CeEEEEEECCcCHHHHHHHHHHH
Confidence 3677777765 888888776543
No 65
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=26.26 E-value=2.4e+02 Score=22.16 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=14.5
Q ss_pred HhhcCCcEEEeCCCcchhh
Q 030992 141 MVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 141 l~r~rPdviL~~G~~~~~p 159 (168)
+...+||++++-|=+--+|
T Consensus 97 l~~~~~Dliv~agy~~IL~ 115 (229)
T 3auf_A 97 LQAYGVDLVCLAGYMRLVR 115 (229)
T ss_dssp HHHTTCSEEEESSCCSCCC
T ss_pred HHhcCCCEEEEcChhHhCC
Confidence 3456899999999776555
No 66
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=25.48 E-value=1.3e+02 Score=24.54 Aligned_cols=92 Identities=7% Similarity=0.098 Sum_probs=46.6
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCC-chhhHHHHHHHHHhhhhhhhccCCceEEEEecccccc
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAAT-DNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREV 119 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~t-D~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV 119 (168)
+++.|+.|+.+-+||. +..|++........ ....|+++- ... .+ +..+ .+.-++.+|+..+-
T Consensus 87 ~~~~ri~vl~Sg~g~n--l~~ll~~~~~g~l~~~i~~Visn~p~~~-----~~----~A~~-----~gIp~~~~~~~~~~ 150 (288)
T 3obi_A 87 ETRRKVMLLVSQSDHC--LADILYRWRVGDLHMIPTAIVSNHPRET-----FS----GFDF-----GDIPFYHFPVNKDT 150 (288)
T ss_dssp TSCEEEEEEECSCCHH--HHHHHHHHHTTSSCEEEEEEEESSCGGG-----SC----CTTT-----TTCCEEECCCCTTT
T ss_pred CCCcEEEEEEcCCCCC--HHHHHHHHHCCCCCeEEEEEEcCCChhH-----HH----HHHH-----cCCCEEEeCCCccc
Confidence 3456877766666774 55666665533332 245666655 222 11 1111 23556667753221
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 120 GQSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 120 ~Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
.+.+=. .-+..+...+||++++-|=+--+|
T Consensus 151 r~~~~~----------~~~~~l~~~~~Dlivlagy~~il~ 180 (288)
T 3obi_A 151 RRQQEA----------AITALIAQTHTDLVVLARYMQILS 180 (288)
T ss_dssp HHHHHH----------HHHHHHHHHTCCEEEESSCCSCCC
T ss_pred HHHHHH----------HHHHHHHhcCCCEEEhhhhhhhCC
Confidence 011100 112334456899999998765544
No 67
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=25.45 E-value=39 Score=24.27 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=19.7
Q ss_pred CCcEEEEEEcCchhHHHHH--HhHHhcc
Q 030992 43 QPLSTLIVLGSGGHTAEMM--NLLSVLQ 68 (168)
Q Consensus 43 ~~~kilvvLGSGGHT~EMl--~LL~~l~ 68 (168)
+..|+++|||+|==|+.|+ +|-+.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~ 39 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQ 39 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHH
Confidence 4568999999999999996 4433354
No 68
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=23.76 E-value=45 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=17.1
Q ss_pred cEEEEEEcC---chhHHHHHHhHHh
Q 030992 45 LSTLIVLGS---GGHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGS---GGHT~EMl~LL~~ 66 (168)
+|++++.|| +|+|..|.+.+..
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~ 25 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAA 25 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHH
Confidence 478999999 4999999987765
No 69
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=23.45 E-value=57 Score=23.34 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=17.0
Q ss_pred cEEEEEEcCc-hhHHHHHHhHHh
Q 030992 45 LSTLIVLGSG-GHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGSG-GHT~EMl~LL~~ 66 (168)
+|++|+-||. |+|.++-+.+..
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~ 24 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRD 24 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHH
Confidence 4788888875 889888877764
No 70
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=22.87 E-value=1.2e+02 Score=25.11 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=23.1
Q ss_pred cEEEEEEc-------CchhHHHHHHhHHhcccCCCCceEEEEeCC
Q 030992 45 LSTLIVLG-------SGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (168)
Q Consensus 45 ~kilvvLG-------SGGHT~EMl~LL~~l~~~~y~~rtyvv~~t 82 (168)
+||++|.. .||=..-+.+|.+.|...-+ ...++...
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~--~V~vi~~~ 43 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGV--RTRTLIPG 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTC--EEEEEEEC
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCC--eEEEEecc
Confidence 46777764 58877778888888874433 34444433
No 71
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=22.55 E-value=28 Score=23.99 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=12.3
Q ss_pred cCchhHHHHHHhHHh
Q 030992 52 GSGGHTAEMMNLLSV 66 (168)
Q Consensus 52 GSGGHT~EMl~LL~~ 66 (168)
||||-..|||.-.+.
T Consensus 52 gsggklqemmkefqq 66 (102)
T 1p68_A 52 GSGGKLQEMMKEFQQ 66 (102)
T ss_dssp STTTHHHHTHHHHHH
T ss_pred CcchHHHHHHHHHHH
Confidence 899999999875543
No 72
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=22.05 E-value=70 Score=24.15 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCcEEEEEEcC---chhHHHHHHhHHhcccCCCCceEEEEeCC-------chhh----HHHHHHHHHhhhhhhhccCCce
Q 030992 43 QPLSTLIVLGS---GGHTAEMMNLLSVLQMDRFTPRFYIAAAT-------DNMS----LQKARVFEDSLLHKKVIKGSSA 108 (168)
Q Consensus 43 ~~~kilvvLGS---GGHT~EMl~LL~~l~~~~y~~rtyvv~~t-------D~~S----~~k~~~~e~~~~~~~~~~~~~~ 108 (168)
+++|++++.|| |+.|..+.+.+........+ ...++.=. |... ...+.++-+++.. -..
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~-v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~------AD~ 75 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIAPASME-VNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQ------ADG 75 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEE-EEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHH------SSE
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHccCCCE-EEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHH------CCE
Confidence 46899999999 89999988877654322111 11011111 1110 0112222222221 123
Q ss_pred EEEEeccccccCcchhHHHHHHHHHHHHHHHH----HhhcCCcEEEeCCCc
Q 030992 109 QFMQIYRSREVGQSYVTSVWTTLLATTHALWL----MVKIRPQVVMNLSLA 155 (168)
Q Consensus 109 ~~~~ipRaReV~Qs~~tSi~ttl~s~~~sl~i----l~r~rPdviL~~G~~ 155 (168)
-++.-|- |..++...+++++.-+.. .++.||=.++++++|
T Consensus 76 iv~~sP~-------y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g 119 (193)
T 3svl_A 76 VVIVTPE-------YNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMG 119 (193)
T ss_dssp EEEEECC-------BTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSS
T ss_pred EEEEecc-------cCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCC
Confidence 4444453 344566777888766654 567888888887443
No 73
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella melitensis BV}
Probab=21.97 E-value=1.5e+02 Score=26.97 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=34.7
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHH
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKAR 91 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~ 91 (168)
.++.+.+|++|-||=.=--..+.+.|.+..-.++.++++..|......+.
T Consensus 147 g~~i~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~Fv~NvDp~~l~~~L 196 (553)
T 4em6_D 147 GRKITDIVNIGIGGSDLGPVMATLALAPYHDEPRAHFVSNIDGAHIADTL 196 (553)
T ss_dssp SCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSSEEEEECCSSHHHHHHHH
T ss_pred CCceeeEEEEecccccHHHHHHHHHHhccCCCCeEEEEeCCCHHHHHHHH
Confidence 56789999999999875444454555432224688888988988775544
No 74
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=21.73 E-value=31 Score=28.39 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=14.9
Q ss_pred EEE-EEEcCchhHHHHHHhH
Q 030992 46 STL-IVLGSGGHTAEMMNLL 64 (168)
Q Consensus 46 kil-vvLGSGGHT~EMl~LL 64 (168)
+++ +-+|+|||+.++++.+
T Consensus 29 ~vLD~g~G~G~~s~~la~~~ 48 (301)
T 1m6y_A 29 IILDCTVGEGGHSRAILEHC 48 (301)
T ss_dssp EEEETTCTTSHHHHHHHHHC
T ss_pred EEEEEeCCcCHHHHHHHHHC
Confidence 444 6799999999988763
No 75
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=21.66 E-value=2.9e+02 Score=21.51 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=14.8
Q ss_pred HHhhcCCcEEEeCCCcchhh
Q 030992 140 LMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 140 il~r~rPdviL~~G~~~~~p 159 (168)
.+...+||++++-|=+--+|
T Consensus 76 ~l~~~~~Dliv~agy~~Il~ 95 (211)
T 3p9x_A 76 QLKEKQIDFVVLAGYMRLVG 95 (211)
T ss_dssp HHHHTTCCEEEESSCCSCCC
T ss_pred HHHhcCCCEEEEeCchhhcC
Confidence 34457899999999776554
No 76
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=21.43 E-value=71 Score=24.60 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=18.0
Q ss_pred cEEEEEEcC---chhHHHHHHhHHh
Q 030992 45 LSTLIVLGS---GGHTAEMMNLLSV 66 (168)
Q Consensus 45 ~kilvvLGS---GGHT~EMl~LL~~ 66 (168)
+|+++|.|| +|+|..|.+.+..
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~ 26 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSS 26 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCChHHHHHHHHHH
Confidence 389999999 5999999886543
No 77
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=20.91 E-value=2.1e+02 Score=23.38 Aligned_cols=93 Identities=8% Similarity=0.052 Sum_probs=46.3
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCC-ceEEEEeCCchhhHHHHHHHHHhhhhhhhccCCceEEEEeccccccC
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~-~rtyvv~~tD~~S~~k~~~~e~~~~~~~~~~~~~~~~~~ipRaReV~ 120 (168)
+++.|+.|+.+-.||. |..|++........ ....|+++-+.. +.+ +.. ..+.-++.+|...+-.
T Consensus 86 ~~~~ri~vl~Sg~g~n--l~~ll~~~~~g~l~~~i~~Visn~~~a----~~~----~A~-----~~gIp~~~~~~~~~~r 150 (287)
T 3nrb_A 86 TDRKKVVIMVSKFDHC--LGDLLYRHRLGELDMEVVGIISNHPRE----ALS----VSL-----VGDIPFHYLPVTPATK 150 (287)
T ss_dssp TCCCEEEEEECSCCHH--HHHHHHHHHHTSSCCEEEEEEESSCGG----GCC----CCC-----CTTSCEEECCCCGGGH
T ss_pred CCCcEEEEEEeCCCcC--HHHHHHHHHCCCCCeEEEEEEeCChHH----HHH----HHH-----HcCCCEEEEeccCcch
Confidence 3456877666556764 45666665433332 255677766441 111 111 1234566666532211
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCcchhh
Q 030992 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVMNLSLARVFF 159 (168)
Q Consensus 121 Qs~~tSi~ttl~s~~~sl~il~r~rPdviL~~G~~~~~p 159 (168)
..|=. .-+..+-..+||++++-|=+--+|
T Consensus 151 ~~~~~----------~~~~~l~~~~~Dlivlagym~il~ 179 (287)
T 3nrb_A 151 AAQES----------QIKNIVTQSQADLIVLARYMQILS 179 (287)
T ss_dssp HHHHH----------HHHHHHHHHTCSEEEESSCCSCCC
T ss_pred hhHHH----------HHHHHHHHhCCCEEEhhhhhhhcC
Confidence 11100 112334456899999998765444
No 78
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.62 E-value=2.4e+02 Score=20.20 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.2
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccC
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMD 70 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~ 70 (168)
+--++|+.+-.|.|.|++++++..+..
T Consensus 79 ~~d~vI~iS~sG~t~~~~~~~~~ak~~ 105 (186)
T 1m3s_A 79 EGDLVIIGSGSGETKSLIHTAAKAKSL 105 (186)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHC
Confidence 345788889899999999999988743
No 79
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi glycolysis, structural genomics, center for STRU genomics of infectious diseases; HET: PG4; 1.50A {Vibrio cholerae} PDB: 3nbu_A
Probab=20.44 E-value=1.6e+02 Score=26.82 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=35.2
Q ss_pred CCCcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCchhhHHHHH
Q 030992 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKAR 91 (168)
Q Consensus 42 ~~~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD~~S~~k~~ 91 (168)
.++.+.+|++|-||=.=--..+.+.+.+..-.++.++++..|......+.
T Consensus 169 g~~i~~VV~IGIGGS~LGp~~v~eAL~~~~~~~~l~FvsNvDp~~l~~~L 218 (574)
T 3hjb_A 169 GKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHMAETL 218 (574)
T ss_dssp SCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSCEEEEECCSSHHHHHHHH
T ss_pred CCCCCeEEEEecccchHHHHHHHHHhhcccCCCeEEEEeCCCHHHHHHHH
Confidence 56788999999999875555555555432225788888988988775543
No 80
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.30 E-value=93 Score=22.43 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=27.2
Q ss_pred CcEEEEEEcCchhHHHHHHhHHhcccCCCCceEEEEeCCc
Q 030992 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (168)
Q Consensus 44 ~~kilvvLGSGGHT~EMl~LL~~l~~~~y~~rtyvv~~tD 83 (168)
+--++|+.+-.|.|.|+.++++..+... -+..-+++..|
T Consensus 96 ~~d~vI~iS~sG~t~~~~~~~~~ak~~g-~~vi~IT~~~~ 134 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITALIPVLKRLH-VPLICITGRPE 134 (183)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHTTT-CCEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence 3468888999999999999999887433 22444444433
Done!