Query 030994
Match_columns 168
No_of_seqs 173 out of 1069
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 2.1E-24 7.2E-29 148.4 5.3 60 8-67 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 91.3 0.099 3.4E-06 37.0 2.2 28 3-32 2-30 (77)
3 1u3e_M HNH homing endonuclease 85.4 0.13 4.3E-06 39.9 -0.6 38 9-49 109-146 (174)
4 1z1b_A Integrase; protein-DNA 80.3 1.8 6.2E-05 34.8 4.3 42 10-55 14-55 (356)
5 3jtz_A Integrase; four strande 65.1 12 0.00039 26.1 5.0 44 12-55 28-75 (88)
6 1b69_A Protein (integrase); in 44.7 25 0.00087 24.0 3.8 20 8-27 11-30 (69)
7 3ju0_A Phage integrase; four s 39.6 42 0.0014 24.1 4.6 44 12-55 28-75 (108)
8 1x60_A Sporulation-specific N- 34.8 24 0.00081 23.0 2.4 23 31-53 46-68 (79)
9 2ftc_I Mitochondrial ribosomal 33.9 59 0.002 23.9 4.6 35 20-56 80-114 (118)
10 1uta_A FTSN, MSGA, cell divisi 31.3 46 0.0016 21.9 3.4 33 21-53 36-68 (81)
11 3r8s_M 50S ribosomal protein L 20.6 1E+02 0.0034 23.3 3.8 35 20-57 92-126 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=2.1e-24 Score=148.38 Aligned_cols=60 Identities=68% Similarity=1.196 Sum_probs=56.8
Q ss_pred CeeEeEECCCCcEEEEEeCCCC-CceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 030994 8 HYRGVRKRPWGRYAAEIRDPWK-KTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAP 67 (168)
Q Consensus 8 ~yRGVr~r~~GKW~A~I~~~~~-gkri~LGtFdT~EEAA~AYD~Aa~~~~G~~A~~NFp~~ 67 (168)
+||||+++++|||+|+|++|.. |+++|||+|+|+||||+|||.|+++++|.++.+|||..
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999998899999999999874 78999999999999999999999999999999999974
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.35 E-value=0.099 Score=37.03 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCCCCCeeEeEEC-CCCcEEEEEeCCCCCce
Q 030994 3 SSREGHYRGVRKR-PWGRYAAEIRDPWKKTR 32 (168)
Q Consensus 3 ~~ntS~yRGVr~r-~~GKW~A~I~~~~~gkr 32 (168)
+..+|+|+||++. +.+.|.|+-.+ +|++
T Consensus 2 ~~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r 30 (77)
T 3igm_B 2 SHMSSGYPGVSWNKRMCAWLAFFYD--GASR 30 (77)
T ss_dssp --CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred CCCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence 3568999999766 47999999998 6654
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=85.40 E-value=0.13 Score=39.88 Aligned_cols=38 Identities=5% Similarity=-0.135 Sum_probs=28.4
Q ss_pred eeEeEECCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHH
Q 030994 9 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYD 49 (168)
Q Consensus 9 yRGVr~r~~GKW~A~I~~~~~gkri~LGtFdT~EEAA~AYD 49 (168)
.+||...+.++|.+.|.. . +.++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 345533224568899988 5 6678999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=80.26 E-value=1.8 Score=34.80 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=32.3
Q ss_pred eEeEECCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHh
Q 030994 10 RGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSL 55 (168)
Q Consensus 10 RGVr~r~~GKW~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~~~ 55 (168)
.||+.++.|.|..+... .|+++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 36877778999988665 888899996 9888887776655544
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=65.12 E-value=12 Score=26.11 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=30.4
Q ss_pred eEECCCC--cEEEEEeCCCCCceEecCCCC--CHHHHHHHHHHHHHHh
Q 030994 12 VRKRPWG--RYAAEIRDPWKKTRVWLGTFD--TPEEAALAYDGAARSL 55 (168)
Q Consensus 12 Vr~r~~G--KW~A~I~~~~~gkri~LGtFd--T~EEAA~AYD~Aa~~~ 55 (168)
++..++| .|.-+-+...+.+++-||.|. |.+||....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4555654 388888772233468899997 5888888777776665
No 6
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=44.66 E-value=25 Score=23.98 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.2
Q ss_pred CeeEeEECCCCcEEEEEeCC
Q 030994 8 HYRGVRKRPWGRYAAEIRDP 27 (168)
Q Consensus 8 ~yRGVr~r~~GKW~A~I~~~ 27 (168)
-+.|+++++.|+|+.+..+.
T Consensus 11 L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 11 LKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp CCTTEEECSSSCEEEEEECT
T ss_pred cCCCeEEccCCcEEEEEEcC
Confidence 36789999999999999984
No 7
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=39.60 E-value=42 Score=24.10 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=29.7
Q ss_pred eEECCCC--cEEEEEeCCCCCceEecCCCC--CHHHHHHHHHHHHHHh
Q 030994 12 VRKRPWG--RYAAEIRDPWKKTRVWLGTFD--TPEEAALAYDGAARSL 55 (168)
Q Consensus 12 Vr~r~~G--KW~A~I~~~~~gkri~LGtFd--T~EEAA~AYD~Aa~~~ 55 (168)
++..++| .|.-+-+...+.+++-||.|. |..||....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4555655 388888762223467899997 5888887777666655
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=34.82 E-value=24 Score=22.99 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.6
Q ss_pred ceEecCCCCCHHHHHHHHHHHHH
Q 030994 31 TRVWLGTFDTPEEAALAYDGAAR 53 (168)
Q Consensus 31 kri~LGtFdT~EEAA~AYD~Aa~ 53 (168)
-++++|-|.|.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 37889999999999988765544
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=33.92 E-value=59 Score=23.90 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhc
Q 030994 20 YAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLR 56 (168)
Q Consensus 20 W~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~~~~ 56 (168)
|.|+|.. +..-+-++...+++.|..|...|+.++-
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCC
Confidence 9999986 4444446666889999999999998874
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=31.34 E-value=46 Score=21.88 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=22.5
Q ss_pred EEEEeCCCCCceEecCCCCCHHHHHHHHHHHHH
Q 030994 21 AAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR 53 (168)
Q Consensus 21 ~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~ 53 (168)
.+.|.....--+|.+|-|.+.+||..+-++...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 445543112248999999999999888765544
No 11
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=20.59 E-value=1e+02 Score=23.28 Aligned_cols=35 Identities=26% Similarity=0.078 Sum_probs=27.2
Q ss_pred EEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhcC
Q 030994 20 YAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG 57 (168)
Q Consensus 20 W~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~~~~G 57 (168)
|.|+|.. +..-+-++. .+++.|..|...|+.++-+
T Consensus 92 wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999986 444444666 4999999999999988743
Done!