BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030996
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 159 bits (402), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 95/144 (65%), Gaps = 20/144 (13%)
Query: 7 RREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSI 66
R++ D KL+M+ Y +E N + V FHGP + YEGGIWK+ V LPD YP+ SPSI
Sbjct: 6 RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 67 GFVNKIFHPNVDELSGSVCLDVINQTWSPMF--------------------DPLNGDAAS 106
GF+NK+ HPNVDE SGSVCLDVINQTW+P++ DPLN DAAS
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAAS 125
Query: 107 LMMKDRKQYEQRVKEYCERYAKKE 130
L+MKD+ YE++VKEY + YA K+
Sbjct: 126 LLMKDKNIYEEKVKEYVKLYASKD 149
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 157 bits (397), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 107/151 (70%), Gaps = 22/151 (14%)
Query: 3 SPCKRR-EMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPY 61
SP KRR + DV+KL+ S + V I G++E V+F+GP+ + YEGG+WK+RV+LPD YP+
Sbjct: 24 SPGKRRMDTDVIKLIESKHEVT-ILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPF 82
Query: 62 KSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF--------------------DPLN 101
KSPSIGF+NKIFHPN+DE SG+VCLDVINQTW+ ++ DPLN
Sbjct: 83 KSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLN 142
Query: 102 GDAASLMMKDRKQYEQRVKEYCERYAKKENI 132
GDAA++ + ++Y+Q++KEY ++YA +E +
Sbjct: 143 GDAAAMYLHRPEEYKQKIKEYIQKYATEEAL 173
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 88/145 (60%), Gaps = 21/145 (14%)
Query: 6 KRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPS 65
+RREMD M+L S V P +D ++E VEF GP+ + YE G W + V+LP YP+KSPS
Sbjct: 15 RRREMDYMRLCNSTRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPS 73
Query: 66 IGFVNKIFHPNVDELSGSVCLDVINQTWSPMF--------------------DPLNGDAA 105
IGF N+I HPNVDE SGSVCLDVINQTW+PM+ DPLN AA
Sbjct: 74 IGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAA 133
Query: 106 SLMMKDRKQYEQRVKEYCERYAKKE 130
L+ DR ++ ++E+ +A +
Sbjct: 134 HLLHADRVGFDALLREHVSTHATPQ 158
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 1 MSSPCKRREMDVMKLMMSD----YSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELP 56
M++P +RR M K + D S P D I + GP+++ +E G +K+ +E
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 57 DAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFD------------------ 98
+ YP K P++ F++K+FHPNV GS+CLD++ WSP +D
Sbjct: 61 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPN 119
Query: 99 -PLNGDAASLMMKDRKQYEQRVKEYCER 125
P N AA L ++R++YE+RV++ E+
Sbjct: 120 SPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 1 MSSPCKRREMDVMKLMMSD----YSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELP 56
M++P +RR M K + D S P D I + GP+++ +E G +K+ +E
Sbjct: 4 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 57 DAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFD------------------ 98
+ YP K P++ F++K+FHPNV GS+CLD++ WSP +D
Sbjct: 64 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPN 122
Query: 99 -PLNGDAASLMMKDRKQYEQRVKEYCER 125
P N AA L ++R++YE+RV++ E+
Sbjct: 123 SPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + V P YP+K P I F KI+HPN++
Sbjct: 24 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL D A + D+++Y + +E
Sbjct: 83 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + V P YP+K P I F KI+HPN++
Sbjct: 40 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS- 98
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL D A + D+++Y + +E
Sbjct: 99 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 158
Query: 122 YCERYA 127
+ ++YA
Sbjct: 159 WTQKYA 164
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + V P YP+K P I F KI+HPN++
Sbjct: 28 SAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS- 86
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL D A + D+++Y + +E
Sbjct: 87 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 146
Query: 122 YCERYA 127
+ ++YA
Sbjct: 147 WTQKYA 152
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 23/152 (15%)
Query: 1 MSSPCKRREMDVMKLM---MSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPD 57
M+S KR + KL+ + + EP +D + +V GP+ S YE GI+++ + LPD
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 58 AYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF-------------------D 98
YP ++P + F+ KI+HPN+D L G +CLDV+ WSP D
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 119
Query: 99 PLNGDAASLMMKDRKQYEQRVKEYCERYAKKE 130
PL D A +K+ + + + +E+ + YAKK+
Sbjct: 120 PLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 151
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 20/129 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
+ EP +D + +V GP+ S YE GI+++ + LPD YP ++P + F+ KI+HPN+D L
Sbjct: 26 TAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 85
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
G +CLDV+ WSP DPL D A +K+ + + + +E
Sbjct: 86 -GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 144
Query: 122 YCERYAKKE 130
+ + YAKK+
Sbjct: 145 WTKLYAKKK 153
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP+DS Y GG++ + + P YP+K P + F KI+HPN++
Sbjct: 42 SAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS- 100
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
G++CLD++ WSP DPL + A L DR +Y+Q +E
Sbjct: 101 QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTARE 160
Query: 122 YCERYA 127
+ ++YA
Sbjct: 161 WSQKYA 166
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F KI+HPN++
Sbjct: 27 SAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS- 85
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL D A + D+++Y + +E
Sbjct: 86 NGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLARE 145
Query: 122 YCERYA 127
+ ++YA
Sbjct: 146 WTQKYA 151
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 24/148 (16%)
Query: 1 MSSPCKRREMDVMKLMMSDYSV----EPINDGISELKVEFHGPKDSLYEGGIWKIRVELP 56
MS+P +RR M K + D V P + I + GP+ + +E G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 57 DAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFD------------------ 98
+ YP K P++ F++K+FHPNV GS+CLD++ WSP +D
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPN 119
Query: 99 -PLNGDAASLMMKDRKQYEQRVKEYCER 125
P N AA L +++++YE+RV E+
Sbjct: 120 SPANSQAAQLYQENKREYEKRVSAIVEQ 147
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 24/148 (16%)
Query: 1 MSSPCKRREMDVMKLMMSD----YSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELP 56
MS+P +RR M K M D S P+ D + GP D+ YE G +++ +E
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 57 DAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFD------------------ 98
+ YP K P + F++++FHPNV +G +CLD++ W+P +D
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPA 119
Query: 99 -PLNGDAASLMMKDRKQYEQRVKEYCER 125
P N +AA+L + QY +RVKE E+
Sbjct: 120 SPANVEAATLFKDHKSQYVKRVKETVEK 147
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 20/127 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D I GP DS Y+GG++ + V P YP+K+P + F+ K++HPN+++
Sbjct: 25 SAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK- 83
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+G +CLD++ WSP DPL+ + A+++ ++KQ+E +E
Sbjct: 84 NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTARE 143
Query: 122 YCERYAK 128
+ YA+
Sbjct: 144 WTRMYAR 150
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 7 RREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSI 66
R D+ K S S P+ D + + GP DS Y GG++ + + P YP+K P +
Sbjct: 8 RELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKV 67
Query: 67 GFVNKIFHPNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASL 107
F +I+HPN++ +GS+CLD++ WSP DPL + A +
Sbjct: 68 NFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHV 126
Query: 108 MMKDRKQYEQRVKEYCERYA 127
DR +YE +E+ +YA
Sbjct: 127 YKTDRSRYELSAREWTRKYA 146
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y GG++ + + P YP+K P I F KI+HPN++
Sbjct: 23 SAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINA- 81
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+G++CLD++ WSP DPL + A + DR +YE +E
Sbjct: 82 NGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141
Query: 122 YCERYA 127
+ ++YA
Sbjct: 142 WTKKYA 147
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP +S Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 25 SAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 83
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y Q +E
Sbjct: 84 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 143
Query: 122 YCERYA 127
+ ++YA
Sbjct: 144 WTQKYA 149
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 90
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y + +E
Sbjct: 91 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIARE 150
Query: 122 YCERYA 127
+ ++YA
Sbjct: 151 WTQKYA 156
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 98
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y + +E
Sbjct: 99 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 158
Query: 122 YCERYA 127
+ ++YA
Sbjct: 159 WTQKYA 164
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y + +E
Sbjct: 83 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 27 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 85
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y + +E
Sbjct: 86 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 145
Query: 122 YCERYA 127
+ ++YA
Sbjct: 146 WTQKYA 151
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y + +E
Sbjct: 83 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 80
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y + +E
Sbjct: 81 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140
Query: 122 YCERYA 127
+ ++YA
Sbjct: 141 WTQKYA 146
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 23/152 (15%)
Query: 1 MSSPCKRREMDVMKLM---MSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPD 57
M+S KR + KL+ + + EP +D + +V GP+ S YE GI+++ + LPD
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 58 AYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF-------------------D 98
YP ++P + F+ KI+HPN+D L G + LDV+ WSP D
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPND 119
Query: 99 PLNGDAASLMMKDRKQYEQRVKEYCERYAKKE 130
PL D A +K+ + + + +E+ + YAKK+
Sbjct: 120 PLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 151
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 24 SAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR++Y + +E
Sbjct: 83 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD + WSP DPL + A + DR++Y + +E
Sbjct: 83 NGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 32 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 90
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR +Y + +E
Sbjct: 91 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 150
Query: 122 YCERYA 127
+ ++YA
Sbjct: 151 WTQKYA 156
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 79
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR +Y + +E
Sbjct: 80 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 139
Query: 122 YCERYA 127
+ ++YA
Sbjct: 140 WTQKYA 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR +Y + +E
Sbjct: 83 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 20/123 (16%)
Query: 24 PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGS 83
P+ D + + GP DS Y+GG++ + V P YP+K P I F KI+HPN++ +GS
Sbjct: 31 PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGS 89
Query: 84 VCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCE 124
+ LD++ WSP DPL D A + D+++Y + +E+ +
Sbjct: 90 IKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 149
Query: 125 RYA 127
+YA
Sbjct: 150 KYA 152
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ W P DPL + A + DR++Y + +E
Sbjct: 83 NGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 1 MSSPCKRREMDVMKLMMSD----YSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELP 56
MS+P ++R M K + D S P ++ I GP D+ ++GG +K+ ++
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 57 DAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFD------------------ 98
+ YP K P++ FV+++FHPN+ GS+CLD++ WSP++D
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPN 119
Query: 99 -PLNGDAASLMMKDRKQYEQRVKEYCER 125
P N +AA + + +++Y +RV++ E+
Sbjct: 120 SPANSEAARMYSESKREYNRRVRDVVEQ 147
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 30 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 88
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+CLD++ WSP DPL + A + DR +Y + +E
Sbjct: 89 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 148
Query: 122 YCERYA 127
+ ++YA
Sbjct: 149 WTQKYA 154
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 23/152 (15%)
Query: 1 MSSPCKRREMDVMKLM---MSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPD 57
M+S KR + KL+ + + EP +D + +V GP+ S YE GI+++ + LPD
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 58 AYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF-------------------D 98
YP ++P + F+ KI+HP +D L G + LDV+ WSP D
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRL-GRISLDVLKTNWSPALQIRTVLLSIQALLASPNPND 119
Query: 99 PLNGDAASLMMKDRKQYEQRVKEYCERYAKKE 130
PL D A +K+ + + + +E+ + YAKK+
Sbjct: 120 PLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 151
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 25 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 83
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+ LD++ WSP DPL + A + DR++Y + +E
Sbjct: 84 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 143
Query: 122 YCERYA 127
+ ++YA
Sbjct: 144 WTQKYA 149
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 24 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 82
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+ LD++ WSP DPL + A + DR++Y + +E
Sbjct: 83 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 142
Query: 122 YCERYA 127
+ ++YA
Sbjct: 143 WTQKYA 148
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 21 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 79
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+ LD++ WSP DPL + A + DR++Y + +E
Sbjct: 80 NGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 139
Query: 122 YCERYA 127
+ ++YA
Sbjct: 140 WTQKYA 145
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 40 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 98
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+ LD++ WSP DPL + A + DR++Y + +E
Sbjct: 99 NGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 158
Query: 122 YCERYA 127
+ ++YA
Sbjct: 159 WTQKYA 164
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 20/133 (15%)
Query: 29 ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDV 88
I LK F GP + YEGG + + +E+P YP+K P + F K++HPN+ ++G++CLD+
Sbjct: 32 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI 91
Query: 89 INQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA-K 128
+ WSP+ DP + + A ++DR+ + + + YA +
Sbjct: 92 LRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151
Query: 129 KENISSINSEETD 141
N N EE+D
Sbjct: 152 TSNGQKGNVEESD 164
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
S P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HPN++
Sbjct: 22 SAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 80
Query: 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKE 121
+GS+ LD++ WSP DPL + A + DR +Y + +E
Sbjct: 81 NGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
Query: 122 YCERYA 127
+ ++YA
Sbjct: 141 WTQKYA 146
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 52/73 (71%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
V+ +++ +EL+ E GP D+ YEGG +++ +++P+ YP+ P + F+ KI+HPN+ ++
Sbjct: 82 VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 141
Query: 82 GSVCLDVINQTWS 94
G++CLD++ W+
Sbjct: 142 GAICLDILKDQWA 154
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 52/73 (71%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
V+ +++ +EL+ E GP D+ YEGG +++ +++P+ YP+ P + F+ KI+HPN+ ++
Sbjct: 46 VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 105
Query: 82 GSVCLDVINQTWS 94
G++CLD++ W+
Sbjct: 106 GAICLDILKDQWA 118
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 52/73 (71%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
V+ +++ +EL+ E GP D+ YEGG +++ +++P+ YP+ P + F+ KI+HPN+ ++
Sbjct: 33 VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 92
Query: 82 GSVCLDVINQTWS 94
G++CLD++ W+
Sbjct: 93 GAICLDILKDQWA 105
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 52/73 (71%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
V+ +++ +EL+ E GP D+ YEGG +++ +++P+ YP+ P + F+ KI+HPN+ ++
Sbjct: 31 VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 90
Query: 82 GSVCLDVINQTWS 94
G++CLD++ W+
Sbjct: 91 GAICLDILKDQWA 103
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 19/118 (16%)
Query: 29 ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDV 88
I LK F GP + YEGG + + +E+P YP+K P + F K++HPN+ ++G++CLD+
Sbjct: 31 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI 90
Query: 89 INQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
+ WSP+ DP + + A ++DR+ + + + YA
Sbjct: 91 LKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 52/73 (71%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
V+ +++ +EL+ E GP D+ YEGG +++ +++P+ YP+ P + F+ KI+HPN+ ++
Sbjct: 30 VDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 89
Query: 82 GSVCLDVINQTWS 94
G++CLD++ W+
Sbjct: 90 GAICLDILKDQWA 102
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 20/123 (16%)
Query: 24 PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGS 83
P+ D + + GP DS Y+GG++ + + P YP+K P + F +I+HP ++ +GS
Sbjct: 25 PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINS-NGS 83
Query: 84 VCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCE 124
+ LD++ WSP DPL + A + DR++Y + +E+ +
Sbjct: 84 ISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 125 RYA 127
+YA
Sbjct: 144 KYA 146
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 1 MSSPCKRREMDVMKLMM---SDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPD 57
+S+ KR + ++ + + + S P D I E + GP S+YEGG++ + +
Sbjct: 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTP 105
Query: 58 AYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF-------------------D 98
YP+K P + F +I+H N++ G +CLD++ WSP D
Sbjct: 106 EYPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPAD 164
Query: 99 PLNGDAASLMMKDRKQYEQRVKEYCERYA 127
PL G A+ M +R ++++ +++ +RYA
Sbjct: 165 PLVGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 19/111 (17%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF 97
GP + YEGG + + + +P YPY P + FV KI+HPN+ +G++CLD++ WSP
Sbjct: 83 GPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPAL 142
Query: 98 -------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129
DP + + A +M+++ + Q K + E +AK+
Sbjct: 143 TIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 23/148 (15%)
Query: 2 SSPCKRREMDVMKLMM---SDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDA 58
S+ KR + ++ ++ + + S P D I E + GP S+YEGG++ + +
Sbjct: 2 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD 61
Query: 59 YPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF-------------------DP 99
YP+K P + F +I+H N++ G +CLD++ WSP DP
Sbjct: 62 YPFKPPKVTFRTRIYHCNINS-QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 120
Query: 100 LNGDAASLMMKDRKQYEQRVKEYCERYA 127
L G A+ M +R ++++ +++ +RYA
Sbjct: 121 LVGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 24/138 (17%)
Query: 6 KRREMDVMKLMMSD---YSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYK 62
KR + ++ L+MS + P D + + GPKD++YE +K+ +E P YPYK
Sbjct: 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71
Query: 63 SPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFD-------------------PLNGD 103
P + F +HPNVD+ SG++CLD++ + W+ +D PLN
Sbjct: 72 PPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQ 130
Query: 104 AASLMMKDRKQYEQRVKE 121
AA M ++ +Y++ + E
Sbjct: 131 AAD-MWSNQTEYKKVLHE 147
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
EP V GP+DS +EGG +K+ + LP+ YP +P + F+ KI+HPNVD+L
Sbjct: 27 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL- 85
Query: 82 GSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEY 122
G +CLD++ WSP DPL D A + Q + + +
Sbjct: 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 145
Query: 123 CERYA 127
YA
Sbjct: 146 TRLYA 150
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
EP V GP+DS +EGG +K+ + LP+ YP +P + F+ KI+HPNVD+L
Sbjct: 28 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL- 86
Query: 82 GSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEY 122
G +CLD++ WSP DPL D A + Q + + +
Sbjct: 87 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 146
Query: 123 CERYA 127
YA
Sbjct: 147 TRLYA 151
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 20/124 (16%)
Query: 23 EPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82
EP V GP+DS +EGG +K+ + LP+ YP +P + F+ KI+HPNVD+L G
Sbjct: 26 EPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-G 84
Query: 83 SVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYC 123
+CLD++ WSP DPL D A + Q + + +
Sbjct: 85 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWT 144
Query: 124 ERYA 127
YA
Sbjct: 145 RLYA 148
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
EP V GP+DS +EGG +K+ + LP+ YP +P + F+ KI+HPNVD+L
Sbjct: 23 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL- 81
Query: 82 GSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEY 122
G +CLD++ WSP DPL D A + Q + + +
Sbjct: 82 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 141
Query: 123 CERYA 127
YA
Sbjct: 142 TRLYA 146
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
EP V GP+DS +EGG +K+ + LP+ YP +P + F+ KI+HPNVD+L
Sbjct: 30 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL- 88
Query: 82 GSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEY 122
G +CLD++ WSP DPL D A + Q + + +
Sbjct: 89 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW 148
Query: 123 CERYA 127
YA
Sbjct: 149 TRLYA 153
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 20/123 (16%)
Query: 24 PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGS 83
P+ + + +GP + YEGG +K+ + LP+ YP + P + F+ KI+HPN+D+L G
Sbjct: 25 PVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GR 83
Query: 84 VCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCE 124
+CLD++ WSP DPL+ A +D+ E +++ +
Sbjct: 84 ICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNK 143
Query: 125 RYA 127
YA
Sbjct: 144 IYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 20/123 (16%)
Query: 24 PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGS 83
P+ + + +GP + YEGG +K+ + LP+ YP + P + F+ KI+HPN+D+L G
Sbjct: 25 PVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GR 83
Query: 84 VCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCE 124
+CLD++ WSP DPL+ A +D+ E +++ +
Sbjct: 84 ICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNK 143
Query: 125 RYA 127
YA
Sbjct: 144 IYA 146
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 6 KRREMDVMKLMMSD---YSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYK 62
KR + ++M LMMS S P +D + + HG ++YE +K+ +E P YPY
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 63 SPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMFD 98
+P++ F+ +HPNVD G++ LD++ + WS ++D
Sbjct: 93 APTVKFLTPCYHPNVDT-QGNISLDILKEKWSALYD 127
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF 97
GP+ + YEGG + + + +P+ YPY P I FV KI+HPN+ +G++CLDV+ WSP
Sbjct: 61 GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPAL 120
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 21/114 (18%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVIN-QTWSPMF 97
P + Y+ G ++I + P YP+K P I F KI+HPN+DE G VCL VI+ + W P
Sbjct: 43 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPAT 101
Query: 98 D-------------------PLNGDAASLMMKDRKQYEQRVKEYCERYAKKENI 132
PL D A KDRK++ + +E+ ++Y +K +
Sbjct: 102 KTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPV 155
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 21/114 (18%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVIN-QTWSPMF 97
P + Y+ G ++I + P YP+K P I F KI+HPN+DE G VCL VI+ + W P
Sbjct: 41 PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPAT 99
Query: 98 D-------------------PLNGDAASLMMKDRKQYEQRVKEYCERYAKKENI 132
PL D A KDRK++ + +E+ ++Y +K +
Sbjct: 100 KTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPV 153
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 24/128 (18%)
Query: 27 DGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCL 86
D + +L+ + G ++ YE G++K+ V +P+ YP++ P I F+ I+HPN+D +G +CL
Sbjct: 31 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICL 89
Query: 87 DVINQ----TWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYC 123
DV+ W P DPL D +S ++ + + +++
Sbjct: 90 DVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWT 149
Query: 124 ERYAKKEN 131
E++A+++
Sbjct: 150 EKHARQKQ 157
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 27/116 (23%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQT------ 92
P + Y+GG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSP-------------MF-------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128
W+P +F DPLN +AA ++D++ + +V +Y +RYA+
Sbjct: 112 WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 27/116 (23%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQT------ 92
P + Y+GG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSP-------------MF-------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128
W+P +F DPLN +AA ++D++ + +V +Y +RYA+
Sbjct: 112 WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 81/159 (50%), Gaps = 35/159 (22%)
Query: 5 CKRREMDVMKLMMSDYSVEPINDG-ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKS 63
K++ D+ ++ + +S ++D I + +V GP D+LYEGG +K ++ P YP K
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 64 PSIGFVNKIFHPNVDELSGSVCLDVIN-------------QTWSPMF------------- 97
P + F+++I+HPN+D+ G+VC+ +++ + W P+
Sbjct: 68 PKMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISML 126
Query: 98 ------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKE 130
P N DAA + ++ +++++V + C R +++E
Sbjct: 127 TDPNFESPANVDAAKMQRENYAEFKKKVAQ-CVRRSQEE 164
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 20 YSVEPINDG-ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVD 78
+ V +++G + +V GP ++ YEGG +K R++ P YPY P+ F+ K++HPN+
Sbjct: 27 FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 86
Query: 79 ELSGSVCLDVINQTWSPMFDPLNGDAAS 106
E +G VC+ +++ P+ DP +G+ S
Sbjct: 87 E-TGDVCISILH---PPVDDPQSGELPS 110
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 20 YSVEPINDG-ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVD 78
+ V +++G + +V GP ++ YEGG +K R++ P YPY P+ F+ K++HPN+
Sbjct: 24 FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 83
Query: 79 ELSGSVCLDVINQTWSPMFDPLNGDAAS 106
E +G VC+ +++ P+ DP +G+ S
Sbjct: 84 E-TGDVCISILH---PPVDDPQSGELPS 107
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 2 SSPCKRREMDVMKLMMSD----YSVEPI--NDGISEL---KVEFHGPKDSLYEGGIWKIR 52
SS CK R + K D + +P +DG +L KV G + +EGG++K+
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 53 VELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVIN--QTWSP--------------- 95
+ P+ YP + P F +FHPNV SG+VCL ++N + W P
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126
Query: 96 ----MFDPLNGDAASLMMKDRKQYEQRVK 120
+ P +A ++ KD+ +YE+RV+
Sbjct: 127 DDPNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 5 CKRREMDVMKLMMSDYSVEPINDG-ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKS 63
+R+ ++ K + +S I+D + +V GP D+LYEGG++K + P YP +
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 64 PSIGFVNKIFHPNVDELSGSVCLDVINQ 91
P + F+ +I+HPNVD+ +G VC+ ++++
Sbjct: 82 PKMKFITEIWHPNVDK-NGDVCISILHE 108
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 20/101 (19%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF- 97
P + Y G ++ + YP + P + + KIFHPN+D L G+VCL+++ + WSP
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSPALD 130
Query: 98 ------------------DPLNGDAASLMMKDRKQYEQRVK 120
DPLN DAA L+ + K++ + V+
Sbjct: 131 LQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 20/125 (16%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81
V P + +++L+V GP+ + Y GG++++++ L +P P F+ KIFHPNV +
Sbjct: 35 VFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-N 93
Query: 82 GSVCLDVINQTWSP--------------MFDP-----LNGDAASLMMKDRKQYEQRVKEY 122
G +C++V+ + W+ + P LN +A L++++ ++Y R +
Sbjct: 94 GEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLL 153
Query: 123 CERYA 127
E +
Sbjct: 154 TEIHG 158
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSILEEDKDWRP 108
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 109 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 21/109 (19%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI-NQTWSP-- 95
P Y + +R+ P YP+K P I F KI+HPNVDE +G +CL +I ++ W P
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 101
Query: 96 -----------------MFDPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
+ +PL D A L+ ++ + + + +E+ R+
Sbjct: 102 KTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 21/109 (19%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI-NQTWSP-- 95
P Y + +R+ P YP+K P I F KI+HPNVDE +G +CL +I ++ W P
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 98
Query: 96 -----------------MFDPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
+ +PL D A L+ ++ + + + +E+ R+
Sbjct: 99 KTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 147
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 21 SVEPINDG-ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFV-NKIFHPNVD 78
S+ PI++ +S+ + GP D+ YE ++I +E+P +YP P I F+ N I H NV
Sbjct: 38 SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVK 97
Query: 79 ELSGSVCLDVIN-QTWSPMFDPLN 101
+G +CL+++ + W+P++D L+
Sbjct: 98 SATGEICLNILKPEEWTPVWDLLH 121
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 105
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 106 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 106
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 107 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 109 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 108 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 107
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 108 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 110
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 111 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 21 SVEPINDG-ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFV-NKIFHPNVD 78
S+ PI++ +S+ + GP D+ YE ++I +E+P +YP P I F+ N I H NV
Sbjct: 38 SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVK 97
Query: 79 ELSGSVCLDVIN-QTWSPMFDPLN 101
+G +CL+++ + W+P++D L+
Sbjct: 98 SATGEICLNILKPEEWTPVWDLLH 121
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 21 SVEPINDG-ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFV-NKIFHPNVD 78
S+ PI++ +S+ + GP D+ YE ++I +E+P +YP P I F+ N I H NV
Sbjct: 38 SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVK 97
Query: 79 ELSGSVCLDVIN-QTWSPMFDPLN 101
+G +CL+++ + W+P++D L+
Sbjct: 98 SATGEICLNILKPEEWTPVWDLLH 121
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 21/123 (17%)
Query: 21 SVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80
+ +P+++ + E +VE G ++S+++G ++++ + Y Y P + F+ FHPNVD
Sbjct: 44 TAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPH 103
Query: 81 SGSVCLDVI--------NQTWSPMF-------------DPLNGDAASLMMKDRKQYEQRV 119
+G C+D + N T S + +P+N +AA +++KD Y +
Sbjct: 104 TGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTIL 163
Query: 120 KEY 122
+ +
Sbjct: 164 RLF 166
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF- 97
P + Y+ G + ++ YP+ P + ++HPN+D L G+VCL+++ + W P+
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNID-LEGNVCLNILREDWKPVLT 101
Query: 98 ------------------DPLNGDAASLMMKDRKQYEQRVKE 121
DPLN +AA ++ +R+ +EQ V+
Sbjct: 102 INSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 143
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
P +A ++ ++R +YE+RV+ +++A
Sbjct: 109 AITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHP V SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 109 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+VCL ++ ++ W P
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRP 108
Query: 96 MFD-------------------PLNGDAASLMMKDRKQYEQRVKEYCERYA 127
P +A ++ ++R +YE+RV+ +++A
Sbjct: 109 AITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSILEEDKDWRP 105
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 106 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 22/111 (19%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVI--NQTWSP 95
G K + +EGG++K+R+ D YP P F +FHPNV SG+V L ++ ++ W P
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSILEEDKDWRP 105
Query: 96 MF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127
DP +A ++ ++R +YE+RV+ +++A
Sbjct: 106 AITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 20/101 (19%)
Query: 39 PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF- 97
P + Y+ G + ++ YP+ P + ++HPN+D L G+V L+++ + W P+
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID-LEGNVALNILREDWKPVLT 121
Query: 98 ------------------DPLNGDAASLMMKDRKQYEQRVK 120
DPLN +AA ++ +R+ +EQ V+
Sbjct: 122 INSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 162
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 1 MSSPCKRREMDVMKLMMSD----YSVEPIN--DG---ISELKVEFHGPKDSLYEGGIWKI 51
MSS C +R + K D + +P+ DG + + + G + + + GG++ I
Sbjct: 3 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 62
Query: 52 RVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVIN--QTWSP 95
VE P+ YP K P + F +HPNV SG++CL ++N Q W P
Sbjct: 63 TVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRP 107
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 1 MSSPCKRREMDVMKLMMSD----YSVEPIN--DG---ISELKVEFHGPKDSLYEGGIWKI 51
MSS C +R + K D + +P+ DG + + + G + + + GG++ I
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 52 RVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVIN--QTWSP 95
VE P+ YP K P + F +HPNV SG++CL ++N Q W P
Sbjct: 61 TVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRP 105
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 25 INDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFV--NKIFHPNVDELSG 82
+ + I++ V+ G +LYEG +++ + YP+ SP + F N HP+V +G
Sbjct: 49 VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NG 107
Query: 83 SVCLDVINQTWSP 95
+CL ++ + WSP
Sbjct: 108 HICLSILTEDWSP 120
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 33/117 (28%)
Query: 36 FHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVIN----- 90
GP D+ Y G++ ++E P YP P + F I HPN+ +G VC+ +++
Sbjct: 41 IQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDD 99
Query: 91 --------QTWSP--------------MFDP-----LNGDAASLMMKDRKQYEQRVK 120
+ WSP + +P N DA L +R ++E++VK
Sbjct: 100 PNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 26 NDGISELKVEFHGPKDSLY--EGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGS 83
D I ++ P DS+Y G +++ V D YP++ P++ FV ++ P V G
Sbjct: 46 TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGG 104
Query: 84 VCLDVINQTWSPMFDPLNGDAASLMMKDR--KQYEQR--------VKEYCERYAK 128
+C ++N W+P D D L++ DR QY+ R + Y E++ +
Sbjct: 105 ICDRMVNDFWTP--DQHASDVIKLVL-DRVFSQYKSRRDDDVNPEARHYLEKFPQ 156
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 24 PIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82
P+N+ E + GP+D+ +E G++ + P YP P + F ++FHPN+ G
Sbjct: 30 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DG 88
Query: 83 SVCLDVINQTWSPMFDPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENISSINSEETDE 142
VC+ +++ +P DP+ ++++ +R Q V++ ++ S+ +E DE
Sbjct: 89 RVCISILH---APGDDPMGYESSA----ERWSPVQSVEKIL------LSVVSMLAEPNDE 135
Query: 143 DISNEDIS 150
+N D S
Sbjct: 136 SGANVDAS 143
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 24 PIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82
P+N+ E + GP+D+ +E G++ + P YP P + F ++FHPN+ G
Sbjct: 27 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DG 85
Query: 83 SVCLDVINQTWSPMFDPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENISSINSEETDE 142
VC+ +++ +P DP+ ++++ +R Q V++ ++ S+ +E DE
Sbjct: 86 RVCISILH---APGDDPMGYESSA----ERWSPVQSVEKIL------LSVVSMLAEPNDE 132
Query: 143 DISNEDIS 150
+N D S
Sbjct: 133 SGANVDAS 140
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 24 PIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82
P+N+ E + GP+D+ +E G++ + P YP P + F ++FHPN+ G
Sbjct: 31 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DG 89
Query: 83 SVCLDVINQTWSPMFDPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENISSINSEETDE 142
VC+ +++ +P DP+ ++++ +R Q V++ ++ S+ +E DE
Sbjct: 90 RVCISILH---APGDDPMGYESSA----ERWSPVQSVEKIL------LSVVSMLAEPNDE 136
Query: 143 DISNEDIS 150
+N D S
Sbjct: 137 SGANVDAS 144
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 24 PIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82
P+N+ E + GP+D+ +E G++ + P YP P + F ++FHPN+ G
Sbjct: 33 PMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DG 91
Query: 83 SVCLDVINQTWSPMFDPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENISSINSEETDE 142
VC+ +++ +P DP+ ++++ +R Q V++ ++ S+ +E DE
Sbjct: 92 RVCISILH---APGDDPMGYESSA----ERWSPVQSVEKIL------LSVVSMLAEPNDE 138
Query: 143 DISNEDIS 150
+N D S
Sbjct: 139 SGANVDAS 146
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 34 VEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTW 93
V++ G ++++Y ++KI++ PD YP K P + F+ K +G +CL V+ +
Sbjct: 54 VQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDY 113
Query: 94 SP 95
+P
Sbjct: 114 NP 115
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 22 VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVD-EL 80
EP+ I E GP+ + YEGG + ++ P +P+K PSI + PN +
Sbjct: 36 AEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT----PNGRFKC 91
Query: 81 SGSVCLDVIN---QTWSPMF 97
+ +CL + + TW+P +
Sbjct: 92 NTRLCLSITDFHPDTWNPAW 111
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 34 VEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQTW 93
V++ G ++++Y ++K+++ PD YP K P + F+ K +G +CL ++ +
Sbjct: 40 VKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDY 99
Query: 94 SP 95
+P
Sbjct: 100 NP 101
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 33 KVEFHGPKDSLYEGGIWKIRVELPDAYPYKSP-----SIGFVNKIFHPNVDELSGSVCLD 87
KV GP D+ Y G ++ V P YP P + G + F+PN+ G VCL
Sbjct: 113 KVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLS 171
Query: 88 VINQTW 93
++N TW
Sbjct: 172 ILN-TW 176
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSV 84
GP + YE I+ ++VE YP PS+ FV KI ++ SG V
Sbjct: 52 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSV 84
GP + YE I+ ++VE YP PS+ FV KI ++ SG V
Sbjct: 46 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSV 84
GP + YE I+ ++VE YP PS+ FV KI ++ SG V
Sbjct: 47 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSV 84
GP + YE I+ ++VE YP PS+ FV KI ++ SG V
Sbjct: 57 GPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSV 84
GP ++YE I+ +++E YP P + FV KI V+ +G V
Sbjct: 77 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSV 84
GP ++YE I+ +++E YP P + FV KI V+ +G V
Sbjct: 49 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSV 84
GP ++YE I+ +++E YP P + FV KI V+ +G V
Sbjct: 67 GPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDV 88
GP S +E I+ + ++ YP P + F++KI P V+ +G V D
Sbjct: 48 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 38 GPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDV 88
GP S +E I+ + ++ YP P + F++KI P V+ +G V D
Sbjct: 47 GPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 95 PMFDPLNGDAASLMMKDR----KQYE--QRVKEYCERYAKKENISSI 135
P DPL D+ S M++ R + YE QRVKE +RY + ++I +I
Sbjct: 363 PAVDPL--DSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAI 407
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 89 INQTWSPMFDPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENISS 134
I QT + A + M KD E + KEY E++AK++ + +
Sbjct: 73 IEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKT 118
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 110 KDRKQYEQRVKEYCERYAKKENISSINSEETDEDISNEDIS 150
+DR+ Y K++ E+ AK+E ++ S++T E ++NE ++
Sbjct: 404 RDRRTYANMFKKFAEQDAKEEANKAM-SKKTSEGVTNEKLT 443
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 110 KDRKQYEQRVKEYCERYAKKENISSINSEETDEDISNEDISDGQS 154
+DR+ Y K++ E+ AK+E ++ ++T E ++NE +D Q+
Sbjct: 404 RDRRIYANMFKKFAEQDAKEEANKAM-GKKTSEGVTNEKGTDSQA 447
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,250,764
Number of Sequences: 62578
Number of extensions: 217543
Number of successful extensions: 649
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 139
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)