Query 030996
Match_columns 167
No_of_seqs 129 out of 1322
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.4E-45 3.1E-50 276.5 12.0 125 4-129 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.9E-45 1.1E-49 278.1 13.9 127 1-128 1-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 7.2E-42 1.6E-46 261.7 15.9 127 1-129 1-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 3.7E-41 8E-46 256.5 15.4 123 5-128 3-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 5.6E-41 1.2E-45 246.3 11.4 125 1-126 1-148 (152)
6 KOG0416 Ubiquitin-protein liga 100.0 1.6E-40 3.4E-45 253.2 10.4 134 1-134 1-154 (189)
7 KOG0418 Ubiquitin-protein liga 100.0 6.8E-38 1.5E-42 242.2 12.1 130 1-130 1-155 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 8.5E-37 1.8E-41 230.0 13.0 124 4-128 6-165 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 4.1E-36 8.9E-41 226.0 11.6 116 7-123 1-140 (140)
10 KOG0424 Ubiquitin-protein liga 100.0 8.7E-36 1.9E-40 221.7 13.0 127 1-128 1-157 (158)
11 KOG0426 Ubiquitin-protein liga 100.0 7.4E-36 1.6E-40 219.6 11.3 125 1-126 1-162 (165)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 2.1E-35 4.4E-40 222.6 12.8 117 6-123 2-141 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.1E-34 2.3E-39 219.6 13.9 121 6-127 1-145 (145)
14 KOG0421 Ubiquitin-protein liga 100.0 8.1E-35 1.7E-39 216.8 8.4 120 4-125 30-171 (175)
15 KOG0422 Ubiquitin-protein liga 100.0 8.1E-33 1.8E-37 204.9 11.2 126 4-131 3-152 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 2.7E-30 5.8E-35 197.5 8.6 126 4-131 29-178 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1.7E-29 3.6E-34 193.5 8.1 129 4-133 11-161 (223)
18 KOG0894 Ubiquitin-protein liga 99.9 2.4E-25 5.2E-30 175.8 10.6 92 1-97 1-102 (244)
19 KOG0427 Ubiquitin conjugating 99.9 3.1E-25 6.8E-30 163.2 8.1 92 4-97 16-111 (161)
20 KOG0429 Ubiquitin-conjugating 99.8 9.8E-19 2.1E-23 138.8 10.7 119 7-126 23-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 5.1E-19 1.1E-23 142.5 7.8 91 4-97 12-107 (314)
22 KOG0895 Ubiquitin-conjugating 99.5 4E-14 8.6E-19 132.3 8.0 92 5-97 849-956 (1101)
23 KOG0895 Ubiquitin-conjugating 99.4 5.7E-13 1.2E-17 124.7 8.5 92 4-96 283-387 (1101)
24 KOG0896 Ubiquitin-conjugating 99.2 7.8E-11 1.7E-15 87.4 6.5 94 4-97 6-108 (138)
25 PF14461 Prok-E2_B: Prokaryoti 97.8 2.5E-05 5.4E-10 58.3 4.7 52 45-97 34-91 (133)
26 KOG0897 Predicted ubiquitin-co 97.5 0.00011 2.3E-09 53.5 3.8 49 49-97 13-62 (122)
27 PF05743 UEV: UEV domain; Int 97.2 0.00035 7.6E-09 51.5 3.6 63 29-97 32-101 (121)
28 PF08694 UFC1: Ubiquitin-fold 96.6 0.00059 1.3E-08 51.6 0.4 79 5-89 26-117 (161)
29 KOG2391 Vacuolar sorting prote 96.0 0.024 5.1E-07 48.6 6.6 64 28-97 51-121 (365)
30 PF05773 RWD: RWD domain; Int 95.9 0.015 3.3E-07 40.8 4.7 65 6-71 4-73 (113)
31 smart00591 RWD domain in RING 94.2 0.32 7E-06 33.7 7.2 25 46-70 40-64 (107)
32 PF14462 Prok-E2_E: Prokaryoti 94.2 0.54 1.2E-05 34.8 8.5 59 11-70 5-65 (122)
33 KOG3357 Uncharacterized conser 92.6 0.12 2.7E-06 38.6 2.9 81 5-89 29-120 (167)
34 KOG0309 Conserved WD40 repeat- 89.9 1.2 2.6E-05 42.3 7.1 66 5-70 422-490 (1081)
35 PF14457 Prok-E2_A: Prokaryoti 84.1 2.5 5.5E-05 32.7 5.0 70 50-133 56-134 (162)
36 KOG4018 Uncharacterized conser 79.2 5.2 0.00011 32.3 5.3 20 48-67 50-69 (215)
37 PF15243 ANAPC15: Anaphase-pro 71.6 24 0.00052 24.8 6.4 34 93-128 17-50 (92)
38 PF09765 WD-3: WD-repeat regio 52.4 31 0.00067 29.1 4.9 58 5-69 101-159 (291)
39 PF06524 NOA36: NOA36 protein; 52.4 11 0.00025 31.5 2.3 7 72-78 83-89 (314)
40 PF06524 NOA36: NOA36 protein; 50.5 14 0.0003 31.0 2.5 7 8-14 18-24 (314)
41 KOG2130 Phosphatidylserine-spe 50.5 1E+02 0.0023 26.8 7.7 20 36-55 266-286 (407)
42 PF06113 BRE: Brain and reprod 50.4 16 0.00035 31.5 2.9 26 48-74 307-332 (333)
43 PF05764 YL1: YL1 nuclear prot 47.3 20 0.00043 29.3 2.9 10 149-158 57-66 (240)
44 COG4547 CobT Cobalamin biosynt 46.9 27 0.00057 31.8 3.8 30 110-139 200-229 (620)
45 cd00421 intradiol_dioxygenase 46.8 22 0.00048 26.6 2.9 25 46-70 65-90 (146)
46 cd03457 intradiol_dioxygenase_ 44.7 24 0.00053 27.8 3.0 25 46-70 86-110 (188)
47 PF04871 Uso1_p115_C: Uso1 / p 43.7 20 0.00044 26.8 2.3 9 142-150 112-120 (136)
48 PF03366 YEATS: YEATS family; 39.7 97 0.0021 21.1 5.0 43 30-74 2-44 (84)
49 PF09026 CENP-B_dimeris: Centr 39.5 9.8 0.00021 27.1 0.0 9 153-161 31-39 (101)
50 PF06113 BRE: Brain and reprod 39.0 42 0.00091 29.0 3.7 43 29-77 53-96 (333)
51 KOG0416 Ubiquitin-protein liga 38.7 32 0.0007 27.0 2.7 19 31-49 48-66 (189)
52 smart00340 HALZ homeobox assoc 37.3 23 0.0005 21.4 1.4 11 5-15 21-31 (44)
53 KOG1832 HIV-1 Vpr-binding prot 36.6 25 0.00054 34.7 2.2 8 43-50 1268-1275(1516)
54 KOG1189 Global transcriptional 36.3 25 0.00055 33.8 2.1 9 109-117 856-864 (960)
55 KOG3241 Uncharacterized conser 35.6 77 0.0017 25.2 4.4 21 114-134 127-147 (227)
56 cd03459 3,4-PCD Protocatechuat 34.9 44 0.00095 25.6 3.0 25 46-70 72-101 (158)
57 PF00845 Gemini_BL1: Geminivir 34.8 67 0.0014 26.8 4.1 47 28-74 101-155 (276)
58 PF04147 Nop14: Nop14-like fam 34.4 29 0.00063 33.5 2.3 10 4-13 88-97 (840)
59 PF06213 CobT: Cobalamin biosy 34.2 1.1E+02 0.0023 25.5 5.4 19 109-127 189-207 (282)
60 PF05086 Dicty_REP: Dictyostel 31.3 41 0.00088 32.4 2.6 26 108-133 850-875 (911)
61 PF05470 eIF-3c_N: Eukaryotic 30.7 71 0.0015 29.8 4.1 39 98-136 103-141 (595)
62 PF04881 Adeno_GP19K: Adenovir 29.0 70 0.0015 24.0 3.0 32 24-55 42-74 (139)
63 KOG1834 Calsyntenin [Extracell 26.3 40 0.00087 32.0 1.7 12 44-55 768-779 (952)
64 KOG4278 Protein tyrosine kinas 25.9 99 0.0021 29.8 4.1 64 19-88 175-241 (1157)
65 PF05470 eIF-3c_N: Eukaryotic 25.9 73 0.0016 29.7 3.3 12 117-128 115-126 (595)
66 PF14460 Prok-E2_D: Prokaryoti 25.7 36 0.00077 26.4 1.1 20 69-89 89-111 (175)
67 KOG4445 Uncharacterized conser 25.3 71 0.0015 27.5 2.8 24 48-71 46-69 (368)
68 PF09606 Med15: ARC105 or Med1 25.0 24 0.00052 34.0 0.0 24 47-70 714-737 (799)
69 KOG2140 Uncharacterized conser 24.6 1.1E+02 0.0024 28.6 4.1 13 108-120 393-405 (739)
70 TIGR02423 protocat_alph protoc 24.0 82 0.0018 25.0 2.9 24 46-69 96-124 (193)
71 cd03463 3,4-PCD_alpha Protocat 22.1 96 0.0021 24.4 2.9 23 47-69 93-120 (185)
72 TIGR01651 CobT cobaltochelatas 21.7 2.5E+02 0.0054 26.4 5.8 22 109-130 180-201 (600)
73 PF10293 DUF2405: Domain of un 21.3 2.3E+02 0.005 21.6 4.8 24 98-121 116-139 (157)
74 COG5129 MAK16 Nuclear protein 20.9 59 0.0013 26.8 1.5 11 46-56 56-66 (303)
75 COG5406 Nucleosome binding fac 20.7 77 0.0017 30.2 2.3 7 110-116 909-915 (1001)
76 PF04889 Cwf_Cwc_15: Cwf15/Cwc 20.3 77 0.0017 26.1 2.1 38 124-161 109-146 (244)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=276.48 Aligned_cols=125 Identities=36% Similarity=0.776 Sum_probs=120.6
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||+||+++| +++|+++.+.++|+++|+++|.||.+|||+||+|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 358999999988 789999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
+|+|||+||+..|+|++ +|++.++|.+|+.|+.+|.++||+||++||+.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998 89999999999999999999999999999973
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-45 Score=278.12 Aligned_cols=127 Identities=44% Similarity=0.893 Sum_probs=122.0
Q ss_pred CCc--hHHHHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccc
Q 030996 1 MSS--PCKRREMDVMKL---MMSDYSVEPIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFH 74 (167)
Q Consensus 1 M~~--~~kRl~kEl~~l---~~~~~~v~~~~~-n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (167)
|++ +.+||++|++.| ++.++++.+..+ |+++|+++|.||.+|||+||+|++.|.||.+||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 454 899999999999 568999999988 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 75 PNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 75 PnV~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
|||+ .+|+|||+||++.|+|++ +|+|.+||++|++|+++|.++||+++++|+.
T Consensus 81 PNV~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVD-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcC-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999 799999999999999999 9999999999999999999999999999985
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=7.2e-42 Score=261.69 Aligned_cols=127 Identities=35% Similarity=0.722 Sum_probs=122.0
Q ss_pred CCchHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccc
Q 030996 1 MSSPCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNV 77 (167)
Q Consensus 1 M~~~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 77 (167)
|+ ++|||++|++.| ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 55 589999999999 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 78 DELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 78 ~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
+ .+|.||+++|.+.|+|++ +|+|.+||++|++|+..|.++||+|+++||..
T Consensus 80 ~-~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 80 D-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred C-CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9 599999999999999999 89999999999999999999999999999983
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.7e-41 Score=256.48 Aligned_cols=123 Identities=35% Similarity=0.759 Sum_probs=118.9
Q ss_pred HHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCC
Q 030996 5 CKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81 (167)
Q Consensus 5 ~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (167)
.+||++|+++| ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ .+
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-~~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-SN 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-CC
Confidence 69999999999 578999999999999999999999999999999999999999999999999999999999999 69
Q ss_pred CeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 82 GSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 82 G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
|.||+++|.+.|+|++ +|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999 8899999999999999999999999999984
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-41 Score=246.30 Aligned_cols=125 Identities=39% Similarity=0.789 Sum_probs=120.5
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
|++ |.|||++++++| ++.||+..|.++|+..|.++|+||.+|||+||+|++.|.|+.+||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 887 899999999999 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030996 77 VDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERY 126 (167)
Q Consensus 77 V~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~ 126 (167)
|| .+|.+||++|...|+|+| +|+|.+||++|.+|+++|.++||..+.+.
T Consensus 81 vy-a~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 81 VY-ADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred cC-CCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99 689999999999999999 89999999999999999999999987764
No 6
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-40 Score=253.23 Aligned_cols=134 Identities=68% Similarity=1.202 Sum_probs=130.6
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 1 MSSPCKRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 1 M~~~~kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
|++..|||..|+..|...+..|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+..
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEccCCCCCCCCCC--------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCCCC
Q 030996 81 SGSVCLDVINQTWSPMF--------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENISS 134 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~--------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~~~ 134 (167)
+|.|||+.++..|+|.| +|+|.+||.+|.++++.|.++||++++|||.+..+..
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~~~~ 154 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEALKE 154 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhhhcc
Confidence 99999999999999999 9999999999999999999999999999999988766
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-38 Score=242.17 Aligned_cols=130 Identities=28% Similarity=0.691 Sum_probs=124.8
Q ss_pred CCchHHHHHHHHHhcC------CCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccc
Q 030996 1 MSSPCKRREMDVMKLM------MSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFH 74 (167)
Q Consensus 1 M~~~~kRl~kEl~~l~------~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (167)
|+.+.+||++|++++. ..||.+...++|+....+.|.||++|||+||+|.+.|++|.+|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 7778999999999982 5689999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Q 030996 75 PNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKE 130 (167)
Q Consensus 75 PnV~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~ 130 (167)
|||...+|.|||++|++.|.+++ +|.+..+|++|.+|++.|.+.||.|+..||.++
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998 888999999999999999999999999999996
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-37 Score=230.04 Aligned_cols=124 Identities=31% Similarity=0.647 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~-n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
+..-|+++|++| +..|+++.+.++ |+++|.|.|+||++|+|+||+|+..+.||.+||.+||+++|+++|||||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy- 84 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY- 84 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC-
Confidence 445666777777 788999998876 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-------------CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030996 80 LSGSVCLDVIN-------------QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 80 ~~G~iCl~~l~-------------~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a 127 (167)
.+|++|++||. +.|+|.. +|+|.+||+.|+.|+++|.++|++++.+..
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 69999999995 3699998 999999999999999999999999998764
Q ss_pred c
Q 030996 128 K 128 (167)
Q Consensus 128 ~ 128 (167)
.
T Consensus 165 e 165 (171)
T KOG0425|consen 165 E 165 (171)
T ss_pred H
Confidence 3
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.1e-36 Score=226.01 Aligned_cols=116 Identities=41% Similarity=0.883 Sum_probs=105.6
Q ss_pred HHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCCC
Q 030996 7 RREMDVMKL---MMSDYSVEPIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82 (167)
Q Consensus 7 Rl~kEl~~l---~~~~~~v~~~~~-n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (167)
||++||+.| ++.|+.+.+..+ |++.|+++|.||++|||+||.|+|.|.||++||++||+|+|.|++|||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 899999998 788999999987 999999999999999999999999999999999999999999999999999 799
Q ss_pred eEEccCCCC-CCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHH
Q 030996 83 SVCLDVINQ-TWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYC 123 (167)
Q Consensus 83 ~iCl~~l~~-~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~ 123 (167)
.||+++|.. .|+|++ .|+|.+|+++|++++++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 599998 88999999999999999999999984
No 10
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-36 Score=221.71 Aligned_cols=127 Identities=33% Similarity=0.676 Sum_probs=119.1
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecCC-----CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPIND-----GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK 71 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~~-----n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (167)
|++ +..||+.|-+.+ .+-|++++|... |+..|+|.|.||.||+|+||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 676 899999999988 577999988742 79999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeEEccCCCCC--CCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 72 IFHPNVDELSGSVCLDVINQT--WSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 72 i~HPnV~~~~G~iCl~~l~~~--W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
+|||||| .+|.|||+||.+. |+|+. +|+|.+|..+|.+|+..|.++||.++++||.
T Consensus 81 l~HPNVy-psgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVY-PSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcC-CCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999999 5999999999864 99998 8999999999999999999999999999985
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-36 Score=219.56 Aligned_cols=125 Identities=30% Similarity=0.622 Sum_probs=117.1
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecC-CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPIN-DGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHP 75 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~-~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (167)
|+. |+|||++||++| +|.||.+.+.+ +|++.|.|.|.||.+|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 665 899999999999 78899998865 6899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCC-------------CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHH
Q 030996 76 NVDELSGSVCLDVIN-------------QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYC 123 (167)
Q Consensus 76 nV~~~~G~iCl~~l~-------------~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~ 123 (167)
||+ .+|+||++||. +.|+|.+ +++|.+|+.+++.++.+|.+.||..+
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 999 79999999985 4699988 78999999999999999999999998
Q ss_pred HHH
Q 030996 124 ERY 126 (167)
Q Consensus 124 ~~~ 126 (167)
.|.
T Consensus 160 rKt 162 (165)
T KOG0426|consen 160 RKT 162 (165)
T ss_pred HHh
Confidence 874
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.1e-35 Score=222.57 Aligned_cols=117 Identities=40% Similarity=0.885 Sum_probs=112.2
Q ss_pred HHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCCC
Q 030996 6 KRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82 (167)
Q Consensus 6 kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (167)
|||++|++.| ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 7999999998 567999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred eEEccCCCCC-CCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHH
Q 030996 83 SVCLDVINQT-WSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYC 123 (167)
Q Consensus 83 ~iCl~~l~~~-W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~ 123 (167)
.||+++|... |+|++ +|+|.+||.+|++|+++|.++||+|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999877 99998 88999999999999999999999974
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.1e-34 Score=219.57 Aligned_cols=121 Identities=40% Similarity=0.841 Sum_probs=114.8
Q ss_pred HHHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCC
Q 030996 6 KRREMDVMKL---MMSDYSVEPIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81 (167)
Q Consensus 6 kRl~kEl~~l---~~~~~~v~~~~~-n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (167)
+||++|++.+ ++.|+++.+.++ |++.|+++|.||.+|||+||.|+|.|.||++||++||+|+|.+++|||||+ .+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~-~~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD-SS 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-CC
Confidence 6999999998 577999888775 999999999999999999999999999999999999999999999999999 59
Q ss_pred CeEEccCCC-CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030996 82 GSVCLDVIN-QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 82 G~iCl~~l~-~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a 127 (167)
|.||+++|. ++|+|++ +|+|.+||++|.++++.|.++|++++++++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 8999998 889999999999999999999999999874
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-35 Score=216.76 Aligned_cols=120 Identities=37% Similarity=0.750 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
..|||++||..| ..+||++.|.++|++.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|+|++|||||+ .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 589999999999 467999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHH
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCER 125 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~ 125 (167)
.|.|||+||++.|+..| +|+|..||.++. |.++|+|.+.+.-++
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 99999999999999998 999999999987 999999998876554
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-33 Score=204.91 Aligned_cols=126 Identities=30% Similarity=0.636 Sum_probs=115.9
Q ss_pred hHHHHHHHHHhcCCCCcE----EEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 4 PCKRREMDVMKLMMSDYS----VEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l~~~~~~----v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
+.+||+|||..|...+.. +..++.|++.|.+.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+||||||++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 589999999999433322 5677889999999998 99999999999999999999999999999999999999995
Q ss_pred CCCeEEccCCC-CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 80 LSGSVCLDVIN-QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 80 ~~G~iCl~~l~-~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
.|.||+.++. ++|+|+. .|++.++|..|.+|+..|.|+|.++++||+.++.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp 152 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKRP 152 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcCC
Confidence 7999999995 8999998 8899999999999999999999999999999875
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-30 Score=197.48 Aligned_cols=126 Identities=29% Similarity=0.693 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhc-CCCCcEEEec--CCCce--EEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccccc
Q 030996 4 PCKRREMDVMKL-MMSDYSVEPI--NDGIS--ELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVD 78 (167)
Q Consensus 4 ~~kRl~kEl~~l-~~~~~~v~~~--~~n~~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (167)
++-||++++.++ .++++++... .+++. .++++|. |..+.|.||.|.|.+++|+.||+.||+|+++|+||||||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 678999999999 6777775443 34444 4999997 9999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 79 ELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 79 ~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
.+|.|||+||+++|+|+. +|+|.+||.++.+|++.|..+||...+.++....
T Consensus 108 -~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~~~ 178 (184)
T KOG0420|consen 108 -LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVGQT 178 (184)
T ss_pred -CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccCce
Confidence 699999999999999998 9999999999999999999999999998876543
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=193.55 Aligned_cols=129 Identities=24% Similarity=0.560 Sum_probs=122.1
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
..|.+.||++.| +|.||.|.+.++|+....+.|.||.||||++|.|++++.+.++||++||+-.|+|+||||||- .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 468889999999 788999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCCC
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENIS 133 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~~ 133 (167)
+|.||.+.|+.+|+|.. +.+|.+|.+++.+|+..|.++||-++..++.+....
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~~~~ 161 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPKPKF 161 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCc
Confidence 99999999999999998 669999999999999999999999999999875443
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-25 Score=175.77 Aligned_cols=92 Identities=28% Similarity=0.605 Sum_probs=84.0
Q ss_pred CCc--hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc--cc
Q 030996 1 MSS--PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK--IF 73 (167)
Q Consensus 1 M~~--~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 73 (167)
|++ |.|||+|||+.| ++++|.+.+.++|+++||++|.||++|||+||+|+.+|.||++||++||.|++.|+ .|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 675 899999999999 78899999999999999999999999999999999999999999999999999983 45
Q ss_pred cccccCCCCeEEccCCC---CCCCCCC
Q 030996 74 HPNVDELSGSVCLDVIN---QTWSPMF 97 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l~---~~W~p~~ 97 (167)
.+| -++||++-. +.|+|+|
T Consensus 81 ktn-----tRLCLSiSDfHPdsWNP~W 102 (244)
T KOG0894|consen 81 KTN-----TRLCLSISDFHPDSWNPGW 102 (244)
T ss_pred ecC-----ceEEEeccccCcCcCCCcc
Confidence 544 379999874 7899999
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-25 Score=163.20 Aligned_cols=92 Identities=26% Similarity=0.668 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccc-ccccccC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKI-FHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~ 79 (167)
|.+||||||.++ +|.|+.+. ..+|+.+|++-+.|.+||.|+|.+|.+.+.||+.||+..|.|.|..++ .||+||
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 789999999999 78899888 667999999999999999999999999999999999999999999765 899999
Q ss_pred CCCeEEccCCCCCCCCCC
Q 030996 80 LSGSVCLDVINQTWSPMF 97 (167)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~ 97 (167)
.+|.|||+||.+.|+|++
T Consensus 94 SNGHICL~iL~d~WsPAm 111 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAM 111 (161)
T ss_pred cCCeEEEEeecccCCcch
Confidence 899999999999999999
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=9.8e-19 Score=138.85 Aligned_cols=119 Identities=21% Similarity=0.350 Sum_probs=104.4
Q ss_pred HHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCcceeccccccccccCCC
Q 030996 7 RREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPY--KSPSIGFVNKIFHPNVDELS 81 (167)
Q Consensus 7 Rl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV~~~~ 81 (167)
.|+.|+..+ +..||+|.|+-.|-+.|.++|++ ..+.|.||+|+|+|.+|.+||. ..|+|.|.+.+|||+|.+.+
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 455555555 67899999999999999999995 6689999999999999999995 47999999999999999999
Q ss_pred CeEEccCCCCCCCCCC----------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030996 82 GSVCLDVINQTWSPMF----------------------DPLNGDAASLMMKDRKQYEQRVKEYCERY 126 (167)
Q Consensus 82 G~iCl~~l~~~W~p~~----------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~ 126 (167)
+.+|++-....|.-.- .-.|++|+.+|.++++.|.++|+++++..
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999998877787664 23499999999999999999999999854
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.1e-19 Score=142.50 Aligned_cols=91 Identities=31% Similarity=0.626 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhcC--CCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCC
Q 030996 4 PCKRREMDVMKLM--MSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81 (167)
Q Consensus 4 ~~kRl~kEl~~l~--~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (167)
+-|||+||.++|. -..+.+.+-++|+++|+++|.||.+|-|+||+||.+|.||.+||++||.+..+|+--..- .+
T Consensus 12 aVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---VN 88 (314)
T ss_pred HHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---eC
Confidence 7899999999994 346778999999999999999999999999999999999999999999999988322211 24
Q ss_pred CeEEccCCC---CCCCCCC
Q 030996 82 GSVCLDVIN---QTWSPMF 97 (167)
Q Consensus 82 G~iCl~~l~---~~W~p~~ 97 (167)
-+|||+|.. +.|.|+|
T Consensus 89 kKiCLSISgyHPEtWqPSW 107 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSW 107 (314)
T ss_pred ceEEEEecCCCccccCcch
Confidence 479999975 7899999
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4e-14 Score=132.33 Aligned_cols=92 Identities=24% Similarity=0.502 Sum_probs=80.1
Q ss_pred HHHHHHHHHh----c---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecc--ccccc
Q 030996 5 CKRREMDVMK----L---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVN--KIFHP 75 (167)
Q Consensus 5 ~kRl~kEl~~----l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t--~i~HP 75 (167)
.+|+++.... | .+.||.|...++.+-...++|.||.||||..|.|.|.|.||.+||..||.|...+ -.++|
T Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 849 EAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 3456555444 3 5889999999998888889999999999999999999999999999999999997 46999
Q ss_pred cccCCCCeEEccCCC-------CCCCCCC
Q 030996 76 NVDELSGSVCLDVIN-------QTWSPMF 97 (167)
Q Consensus 76 nV~~~~G~iCl~~l~-------~~W~p~~ 97 (167)
|.| ..|+|||++|+ +.|+|+-
T Consensus 929 nly-~~g~vc~s~l~tw~g~~~e~w~~~s 956 (1101)
T KOG0895|consen 929 NLY-EDGKVCLSLLNTWHGRGNEVWNPSS 956 (1101)
T ss_pred ccc-cccceehhhhccccCCCccccCcch
Confidence 999 69999999996 5699975
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.7e-13 Score=124.68 Aligned_cols=92 Identities=24% Similarity=0.556 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc---cccccc
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK---IFHPNV 77 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPnV 77 (167)
-.+|+++|++.+ .+.|+.+++.+..+....+.|.||.||||++|+|.|.|.||..||..||.|.+++. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 478999999998 68899999999999999999999999999999999999999999999999999975 799999
Q ss_pred cCCCCeEEccCCC-------CCCCCC
Q 030996 78 DELSGSVCLDVIN-------QTWSPM 96 (167)
Q Consensus 78 ~~~~G~iCl~~l~-------~~W~p~ 96 (167)
| .+|+||+++|. +.|+|.
T Consensus 363 Y-n~GKVcLslLgTwtg~~~e~wtp~ 387 (1101)
T KOG0895|consen 363 Y-NDGKVCLSLLGTWTGSRREKWTPN 387 (1101)
T ss_pred c-cCceEEeeeeeecccccccCCCcc
Confidence 9 59999999984 579888
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.8e-11 Score=87.39 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhc----CCCCcEEEecCC-C--ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 4 PCKRREMDVMKL----MMSDYSVEPIND-G--ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 4 ~~kRl~kEl~~l----~~~~~~v~~~~~-n--~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
+.-||++||.+= -+..++.-+.++ | +..|..+|.||+.|+||+.+|.++|..-++||..||.|+|.+++.-+.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 567888888774 344555555443 3 678999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCC--CCCCCCCC
Q 030996 77 VDELSGSVCLDVI--NQTWSPMF 97 (167)
Q Consensus 77 V~~~~G~iCl~~l--~~~W~p~~ 97 (167)
|+..+|.|.-..+ ..+|+-.|
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y 108 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSY 108 (138)
T ss_pred cccCCCccCccccchhhcccccc
Confidence 9878888765443 36898887
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.85 E-value=2.5e-05 Score=58.34 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=44.8
Q ss_pred CCCEEEEEEEcCCCCCCCCCcceecccc---ccccccCCCCeEEc---cCCCCCCCCCC
Q 030996 45 EGGIWKIRVELPDAYPYKSPSIGFVNKI---FHPNVDELSGSVCL---DVINQTWSPMF 97 (167)
Q Consensus 45 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~G~iCl---~~l~~~W~p~~ 97 (167)
.|+.|.+.|.||+.||..||.|....+. +-|||+ .+|.+|+ ...-+.|.|.-
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~ 91 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEG 91 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHH
Confidence 6899999999999999999999988543 789999 5999999 66667787765
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00011 Score=53.52 Aligned_cols=49 Identities=18% Similarity=0.438 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCCCCCCcceeccccccccccCCCCeEEccCCC-CCCCCCC
Q 030996 49 WKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVIN-QTWSPMF 97 (167)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~iCl~~l~-~~W~p~~ 97 (167)
..+.+.|+.+||+.||.++...++-.-..-..+|.||+.+|. ++|..+|
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay 62 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAY 62 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchh
Confidence 456778999999999999865533322222346889999995 7899998
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.22 E-value=0.00035 Score=51.54 Aligned_cols=63 Identities=29% Similarity=0.466 Sum_probs=40.6
Q ss_pred ceEEEEEEeCCCCCCCCCCEE--EEEEEcCCCCCCCCCcceecccc-----ccccccCCCCeEEccCCCCCCCCCC
Q 030996 29 ISELKVEFHGPKDSLYEGGIW--KIRVELPDAYPYKSPSIGFVNKI-----FHPNVDELSGSVCLDVINQTWSPMF 97 (167)
Q Consensus 29 ~~~w~~~i~Gp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~G~iCl~~l~~~W~p~~ 97 (167)
++...++|. -.|.|..| .+.|.+|.+||..||.|...... -+.+|+ .+|+|.+..| .+|++..
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~ 101 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPS 101 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTT
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCC
Confidence 444555553 46777777 56777899999999999887532 244999 6999988877 5688743
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.63 E-value=0.00059 Score=51.60 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHHHHHHhc----------CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCE--EEEEEEcCCCCCCCCCcceecccc
Q 030996 5 CKRREMDVMKL----------MMSDYSVEPINDGISELKVEFHGPKDSLYEGGI--WKIRVELPDAYPYKSPSIGFVNKI 72 (167)
Q Consensus 5 ~kRl~kEl~~l----------~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~--f~~~i~fp~~YP~~pP~v~f~t~i 72 (167)
..||..||+.| -...+.+... .+=+.|.+.-. -.|.--. |.|.+.+|..||..||.|....--
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn-~~GT~W~GkCW----~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLESN-KEGTRWFGKCW----YIHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEE----EEETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEeccC-CCCCccccEEE----EEeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 57999999997 1224445422 23345543221 0112223 556666799999999999876311
Q ss_pred -ccccccCCCCeEEccCC
Q 030996 73 -FHPNVDELSGSVCLDVI 89 (167)
Q Consensus 73 -~HPnV~~~~G~iCl~~l 89 (167)
--.-.| ..|+|||++.
T Consensus 101 GKTaKMY-RGGkIClt~H 117 (161)
T PF08694_consen 101 GKTAKMY-RGGKICLTDH 117 (161)
T ss_dssp TT-SSBC-CCCBB---TT
T ss_pred Cchhhhh-cCceEeeecc
Confidence 112223 3899999875
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.024 Score=48.59 Aligned_cols=64 Identities=27% Similarity=0.437 Sum_probs=47.9
Q ss_pred CceEEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCcceeccc-----cccccccCCCCeEEccCCCCCCCCCC
Q 030996 28 GISELKVEFHGPKDSLYEGGIWK--IRVELPDAYPYKSPSIGFVNK-----IFHPNVDELSGSVCLDVINQTWSPMF 97 (167)
Q Consensus 28 n~~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~~G~iCl~~l~~~W~p~~ 97 (167)
.++...++| -++|.|..|. +.|.+.+.||..||.+..... -.|-+|+ .+|+|.|..| .+|.|.-
T Consensus 51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYL-h~W~~ps 121 (365)
T KOG2391|consen 51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYL-HNWDPPS 121 (365)
T ss_pred chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhh-ccCCCcc
Confidence 344444444 4678887775 566689999999999977641 1389999 7999999998 5687765
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.93 E-value=0.015 Score=40.82 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=37.8
Q ss_pred HHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc
Q 030996 6 KRREMDVMKL---MMSDYSVEPINDGISELKVEFHG--PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK 71 (167)
Q Consensus 6 kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (167)
.+++.|+..| -+..+ ......+...+.+.+.+ ...+.-....+++.|.||++||..+|.|.+...
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 4566777776 12222 23333445556666632 233344456899999999999999999986653
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.21 E-value=0.32 Score=33.70 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCCCCCCcceecc
Q 030996 46 GGIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
.-.+.+.|.||++||..+|.|.+..
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 3568999999999999999998765
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.18 E-value=0.54 Score=34.81 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=44.7
Q ss_pred HHHhcCCCCcEEEecCCCceEEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCcceecc
Q 030996 11 DVMKLMMSDYSVEPINDGISELKVEFHG--PKDSLYEGGIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 11 El~~l~~~~~~v~~~~~n~~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
|..-|...|+.++...+.-..|.+ |.| .+.+.|.+..-.+-|.+|+.||..+|.+.+..
T Consensus 5 D~~~L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~ 65 (122)
T PF14462_consen 5 DEEYLDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVY 65 (122)
T ss_pred HHHHHHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEEC
Confidence 334445567787777666667766 555 47778999999999999999999998777654
No 33
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=0.12 Score=38.62 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCcceecccc-c
Q 030996 5 CKRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGG----------IWKIRVELPDAYPYKSPSIGFVNKI-F 73 (167)
Q Consensus 5 ~kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~t~i-~ 73 (167)
.+||..|++.|.. +++-..++-..|.-.=-.+.||-|-|. .|-+.+.+|-.||-.+|.+....-- -
T Consensus 29 vqrlkeey~sli~---yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA---YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHHH---HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 5799999998721 011111222233333344677777662 3456666799999999998764210 1
Q ss_pred cccccCCCCeEEccCC
Q 030996 74 HPNVDELSGSVCLDVI 89 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l 89 (167)
..-.| ..|+|||.-.
T Consensus 106 takmy-rggkiclt~h 120 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTDH 120 (167)
T ss_pred hhhhh-cCceEeeccc
Confidence 11223 3799998543
No 34
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.87 E-value=1.2 Score=42.28 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=44.5
Q ss_pred HHHHHHHHHhc--CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCC-CCcceecc
Q 030996 5 CKRREMDVMKL--MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYK-SPSIGFVN 70 (167)
Q Consensus 5 ~kRl~kEl~~l--~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~-pP~v~f~t 70 (167)
-+-|..|+..| .-..+.++-.+---+...+.+.||-.---.--..++.|.||.+||.+ +|+++|..
T Consensus 422 pQnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhhHHhHHhHhhccccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEec
Confidence 45677787777 44566665444444666777877754442223457889999999997 68998874
No 35
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=84.09 E-value=2.5 Score=32.66 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=47.5
Q ss_pred EEEEEcCCCCCCCCCcceeccccc---cccccCCC-----CeEEccCCC-CCCCCCCChhhHHHHHHHHHCHHHHHHHHH
Q 030996 50 KIRVELPDAYPYKSPSIGFVNKIF---HPNVDELS-----GSVCLDVIN-QTWSPMFDPLNGDAASLMMKDRKQYEQRVK 120 (167)
Q Consensus 50 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~~-----G~iCl~~l~-~~W~p~~~p~n~eaa~~~~~n~~~f~~~~r 120 (167)
.+.|.|+.+||..+|.|.+.-+.| +||++ .. ..+||---. ..|.+. -..+.|..++.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~-------------~g~~~~l~rl~ 121 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPS-------------WGPEGFLDRLF 121 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhc-------------cCHHHHHHHHH
Confidence 467899999999999877775433 57776 24 568984421 122222 34578999999
Q ss_pred HHHHHHhcccCCC
Q 030996 121 EYCERYAKKENIS 133 (167)
Q Consensus 121 ~~~~~~a~~~~~~ 133 (167)
.|-.+-|...--.
T Consensus 122 ~Wl~~aA~g~Lh~ 134 (162)
T PF14457_consen 122 DWLRDAAQGTLHR 134 (162)
T ss_pred HHHHHHhhcccCC
Confidence 9999888765443
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=79.24 E-value=5.2 Score=32.34 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.7
Q ss_pred EEEEEEEcCCCCCCCCCcce
Q 030996 48 IWKIRVELPDAYPYKSPSIG 67 (167)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~ 67 (167)
.+.+.+.++.+||..+|.|.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78999999999999999993
No 37
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=71.59 E-value=24 Score=24.81 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=15.8
Q ss_pred CCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 93 WSPMFDPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 93 W~p~~~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
|.+.-.|++.++- +..-.+++.+..+.-++|..-
T Consensus 17 wf~~d~pc~dE~E--L~~~Eq~~q~Wl~sI~ekd~n 50 (92)
T PF15243_consen 17 WFNLDRPCVDETE--LQQQEQQHQAWLQSIAEKDNN 50 (92)
T ss_pred cccCCCccchHHH--HHHHHHHHHHHHHHHHHhccC
Confidence 4444456666553 223334444444444555443
No 38
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=52.44 E-value=31 Score=29.15 Aligned_cols=58 Identities=16% Similarity=0.342 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcC-CCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceec
Q 030996 5 CKRREMDVMKLM-MSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFV 69 (167)
Q Consensus 5 ~kRl~kEl~~l~-~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 69 (167)
.++|.+|+..|. ...+.+. .+.++....+.+.. ....-.++|.++.+||..+|.+..-
T Consensus 101 ys~ll~EIe~IGW~kl~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~ 159 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKLVQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLD 159 (291)
T ss_dssp C-CHHHHHHHHHCGCCEEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-
T ss_pred HHHHHHHHHHhccccceEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCC
Confidence 467888888883 3333333 34577788888863 1245679999999999999976544
No 39
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=52.40 E-value=11 Score=31.52 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=3.6
Q ss_pred ccccccc
Q 030996 72 IFHPNVD 78 (167)
Q Consensus 72 i~HPnV~ 78 (167)
|-||.|+
T Consensus 83 vkH~g~~ 89 (314)
T PF06524_consen 83 VKHPGVF 89 (314)
T ss_pred EecCcee
Confidence 4455555
No 40
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=50.54 E-value=14 Score=31.03 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 030996 8 REMDVMK 14 (167)
Q Consensus 8 l~kEl~~ 14 (167)
+||+++.
T Consensus 18 rqk~ir~ 24 (314)
T PF06524_consen 18 RQKEIRS 24 (314)
T ss_pred HHHHHHh
Confidence 4445443
No 41
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=50.46 E-value=1e+02 Score=26.79 Aligned_cols=20 Identities=20% Similarity=0.800 Sum_probs=11.9
Q ss_pred EeCCCCCCC-CCCEEEEEEEc
Q 030996 36 FHGPKDSLY-EGGIWKIRVEL 55 (167)
Q Consensus 36 i~Gp~~tpy-egg~f~~~i~f 55 (167)
+.||-.|.| -||.+|+.|.+
T Consensus 266 ~q~pGEt~fVP~GWWHvVlNl 286 (407)
T KOG2130|consen 266 LQKPGETMFVPSGWWHVVLNL 286 (407)
T ss_pred eecCCceEEecCCeEEEEecc
Confidence 445555666 46677766655
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=50.40 E-value=16 Score=31.53 Aligned_cols=26 Identities=23% Similarity=0.691 Sum_probs=22.1
Q ss_pred EEEEEEEcCCCCCCCCCcceecccccc
Q 030996 48 IWKIRVELPDAYPYKSPSIGFVNKIFH 74 (167)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (167)
.|-+.|.+|..||...|.++|.+ +||
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 57788889999999999999876 455
No 43
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.34 E-value=20 Score=29.29 Aligned_cols=10 Identities=30% Similarity=0.209 Sum_probs=5.0
Q ss_pred CCCCCCCCCC
Q 030996 149 ISDGQSTSSD 158 (167)
Q Consensus 149 ~~~~~~~~~~ 158 (167)
+|+||++++|
T Consensus 57 Dsdf~~se~d 66 (240)
T PF05764_consen 57 DSDFDDSEDD 66 (240)
T ss_pred ccccCccccC
Confidence 5555544443
No 44
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=46.93 E-value=27 Score=31.83 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=19.2
Q ss_pred HCHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 030996 110 KDRKQYEQRVKEYCERYAKKENISSINSEE 139 (167)
Q Consensus 110 ~n~~~f~~~~r~~~~~~a~~~~~~~~~~~~ 139 (167)
.+.+.|...++........+......++++
T Consensus 200 dDq~afar~~rdml~sm~~ae~~~~d~~~e 229 (620)
T COG4547 200 DDQQAFARVVRDMLGSMDMAEETGDDGIEE 229 (620)
T ss_pred chhHHhhhhHHHHhcccccccccCCCcCCC
Confidence 566788888888776666555444444333
No 45
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=46.82 E-value=22 Score=26.62 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCC-CCCCcceecc
Q 030996 46 GGIWKIRVELPDAYP-YKSPSIGFVN 70 (167)
Q Consensus 46 gg~f~~~i~fp~~YP-~~pP~v~f~t 70 (167)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999998773
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=44.67 E-value=24 Score=27.80 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCEEEEEEEcCCCCCCCCCcceecc
Q 030996 46 GGIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
.|.|.|+=.||--||.++|.|.|..
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4899999999999999999998874
No 47
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=43.73 E-value=20 Score=26.75 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=4.1
Q ss_pred cccccCCCC
Q 030996 142 EDISNEDIS 150 (167)
Q Consensus 142 ~~~~~~~~~ 150 (167)
.+.|+++.+
T Consensus 112 ~eVSddE~~ 120 (136)
T PF04871_consen 112 EEVSDDEDS 120 (136)
T ss_pred CCccCCccc
Confidence 444444444
No 48
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=39.74 E-value=97 Score=21.12 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=28.0
Q ss_pred eEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccc
Q 030996 30 SELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFH 74 (167)
Q Consensus 30 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (167)
..|.+.+.|+.+.-...-+=++...+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 57999999988764444566788888888886 66555554443
No 49
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=39.50 E-value=9.8 Score=27.07 Aligned_cols=9 Identities=0% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCCCCCc
Q 030996 153 QSTSSDDNI 161 (167)
Q Consensus 153 ~~~~~~~~~ 161 (167)
+.+|+||++
T Consensus 31 Dddddee~d 39 (101)
T PF09026_consen 31 DDDDDEEED 39 (101)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 344444443
No 50
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=39.00 E-value=42 Score=29.02 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=35.2
Q ss_pred ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceec-cccccccc
Q 030996 29 ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFV-NKIFHPNV 77 (167)
Q Consensus 29 ~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnV 77 (167)
.-.+.+.| ||.|-..+-.|.|...||..||-+.|. ..-|+|-.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCCh
Confidence 33566666 799999999999999999999999997 34588854
No 51
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.67 E-value=32 Score=27.02 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=14.1
Q ss_pred EEEEEEeCCCCCCCCCCEE
Q 030996 31 ELKVEFHGPKDSLYEGGIW 49 (167)
Q Consensus 31 ~w~~~i~Gp~~tpyegg~f 49 (167)
.|.+.+.=|..=||+.=..
T Consensus 48 vWkv~V~lPd~YP~KSPSI 66 (189)
T KOG0416|consen 48 VWKVRVELPDNYPFKSPSI 66 (189)
T ss_pred eEEEEEECCCCCCCCCCcc
Confidence 5888888888888876443
No 52
>smart00340 HALZ homeobox associated leucin zipper.
Probab=37.25 E-value=23 Score=21.36 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=9.7
Q ss_pred HHHHHHHHHhc
Q 030996 5 CKRREMDVMKL 15 (167)
Q Consensus 5 ~kRl~kEl~~l 15 (167)
.+||++|+.+|
T Consensus 21 NrRL~ke~~eL 31 (44)
T smart00340 21 NRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHH
Confidence 68999998887
No 53
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.60 E-value=25 Score=34.68 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=4.1
Q ss_pred CCCCCEEE
Q 030996 43 LYEGGIWK 50 (167)
Q Consensus 43 pyegg~f~ 50 (167)
.|-||.||
T Consensus 1268 ~~~~G~FH 1275 (1516)
T KOG1832|consen 1268 DYGGGGFH 1275 (1516)
T ss_pred eccccccc
Confidence 44455554
No 54
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=36.30 E-value=25 Score=33.75 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=5.4
Q ss_pred HHCHHHHHH
Q 030996 109 MKDRKQYEQ 117 (167)
Q Consensus 109 ~~n~~~f~~ 117 (167)
..++..|..
T Consensus 856 ~dDP~~Ffe 864 (960)
T KOG1189|consen 856 TDDPIAFFE 864 (960)
T ss_pred ccCHHHHHh
Confidence 456666654
No 55
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.57 E-value=77 Score=25.24 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhcccCCCC
Q 030996 114 QYEQRVKEYCERYAKKENISS 134 (167)
Q Consensus 114 ~f~~~~r~~~~~~a~~~~~~~ 134 (167)
-|..+-|.-..+|..+.+.+.
T Consensus 127 n~ser~RRt~lR~m~k~~k~~ 147 (227)
T KOG3241|consen 127 NASERDRRTLLRAMNKDNKPN 147 (227)
T ss_pred hhhHHHHHHHHHHHhcccCcc
Confidence 344444444445444444443
No 56
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=34.88 E-value=44 Score=25.58 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=21.9
Q ss_pred CCEEEEEEEcCCCCC-----CCCCcceecc
Q 030996 46 GGIWKIRVELPDAYP-----YKSPSIGFVN 70 (167)
Q Consensus 46 gg~f~~~i~fp~~YP-----~~pP~v~f~t 70 (167)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 388999999999999 7999988763
No 57
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=34.84 E-value=67 Score=26.76 Aligned_cols=47 Identities=19% Similarity=0.392 Sum_probs=30.2
Q ss_pred CceEEEEEEeCCCCCCCCC---CEEEEEEEcC-----CCCCCCCCcceecccccc
Q 030996 28 GISELKVEFHGPKDSLYEG---GIWKIRVELP-----DAYPYKSPSIGFVNKIFH 74 (167)
Q Consensus 28 n~~~w~~~i~Gp~~tpyeg---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~H 74 (167)
|..-|.+.+.--....-.| ..|+.++++. .+-||+||+|+.+++-|.
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft 155 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFT 155 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccC
Confidence 4445766665322222222 4567777775 688999999999987653
No 58
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=34.37 E-value=29 Score=33.54 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=5.0
Q ss_pred hHHHHHHHHH
Q 030996 4 PCKRREMDVM 13 (167)
Q Consensus 4 ~~kRl~kEl~ 13 (167)
+..|..+|-+
T Consensus 88 ml~Rf~~Er~ 97 (840)
T PF04147_consen 88 MLERFTRERQ 97 (840)
T ss_pred HHHHHHHHHH
Confidence 4555555533
No 59
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=34.17 E-value=1.1e+02 Score=25.50 Aligned_cols=19 Identities=11% Similarity=0.391 Sum_probs=14.0
Q ss_pred HHCHHHHHHHHHHHHHHHh
Q 030996 109 MKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 109 ~~n~~~f~~~~r~~~~~~a 127 (167)
..+...|.+.++.......
T Consensus 189 ~~dq~afa~~~~~ll~~le 207 (282)
T PF06213_consen 189 LDDQAAFARAARDLLEDLE 207 (282)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4677888888888777643
No 60
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=31.25 E-value=41 Score=32.40 Aligned_cols=26 Identities=8% Similarity=0.369 Sum_probs=16.7
Q ss_pred HHHCHHHHHHHHHHHHHHHhcccCCC
Q 030996 108 MMKDRKQYEQRVKEYCERYAKKENIS 133 (167)
Q Consensus 108 ~~~n~~~f~~~~r~~~~~~a~~~~~~ 133 (167)
|.+--.++.+.++....++.......
T Consensus 850 ~l~~~~k~~~L~~~Fi~~~~~~n~lt 875 (911)
T PF05086_consen 850 LLRKQDKCEKLKKNFISKLKELNKLT 875 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 33445667777777777777665444
No 61
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.74 E-value=71 Score=29.79 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=23.0
Q ss_pred ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCCCCCC
Q 030996 98 DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENISSIN 136 (167)
Q Consensus 98 ~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~~~~~ 136 (167)
+..|..|.+.++..-+.|++.......+|...+..-...
T Consensus 103 s~~nakaln~lkQklkK~~k~~e~~i~~yrenPe~~~~e 141 (595)
T PF05470_consen 103 SKNNAKALNTLKQKLKKYNKEYEAQIAKYRENPEAFEEE 141 (595)
T ss_pred CHHhHHHHHHHHHHHHhhhhhHHHHHHHHHhCCcccccc
Confidence 555656665555555555555566666777665555444
No 62
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=29.01 E-value=70 Score=23.99 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=22.9
Q ss_pred ecCCCceEEEEEEeCCCCCCCC-CCEEEEEEEc
Q 030996 24 PINDGISELKVEFHGPKDSLYE-GGIWKIRVEL 55 (167)
Q Consensus 24 ~~~~n~~~w~~~i~Gp~~tpye-gg~f~~~i~f 55 (167)
-.+.+...|.|++.|+.||+.. +-+|-+++.|
T Consensus 42 WqPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 42 WQPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred ccCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 3566788899999999998873 4455555444
No 63
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=26.33 E-value=40 Score=32.03 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=5.2
Q ss_pred CCCCEEEEEEEc
Q 030996 44 YEGGIWKIRVEL 55 (167)
Q Consensus 44 yegg~f~~~i~f 55 (167)
|-...|.+++.+
T Consensus 768 y~SNef~vev~i 779 (952)
T KOG1834|consen 768 YLSNEFFVEVNI 779 (952)
T ss_pred eecceeEEEEEE
Confidence 333444454443
No 64
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=25.90 E-value=99 Score=29.80 Aligned_cols=64 Identities=14% Similarity=0.299 Sum_probs=42.7
Q ss_pred CcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCC-CCCCcceecc--ccccccccCCCCeEEccC
Q 030996 19 DYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYP-YKSPSIGFVN--KIFHPNVDELSGSVCLDV 88 (167)
Q Consensus 19 ~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP-~~pP~v~f~t--~i~HPnV~~~~G~iCl~~ 88 (167)
.+-|.-.+..+-+.-+.+. |+|.+||.+|....+=- +.--.++|.| ...|.+..-.+|-||+-.
T Consensus 175 SFLVRESEsSpgQ~sISlR------yeGRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHHStvADGLittLh 241 (1157)
T KOG4278|consen 175 SFLVRESESSPGQYSISLR------YEGRVYHYRINTDNDGKMYVTQESRFRTLAELVHHHSTVADGLITTLH 241 (1157)
T ss_pred ceEEeeccCCCcceeEEEE------ecceEEEEEeeccCCccEEEeehhhhhHHHHHHhhccccccceeEeee
Confidence 4556777778888888886 99999999998765422 2234456665 334444333799999744
No 65
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=25.87 E-value=73 Score=29.70 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhc
Q 030996 117 QRVKEYCERYAK 128 (167)
Q Consensus 117 ~~~r~~~~~~a~ 128 (167)
+++|++.+.|..
T Consensus 115 QklkK~~k~~e~ 126 (595)
T PF05470_consen 115 QKLKKYNKEYEA 126 (595)
T ss_pred HHHHhhhhhHHH
Confidence 444444444444
No 66
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=25.67 E-value=36 Score=26.36 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=14.6
Q ss_pred cccccc---ccccCCCCeEEccCC
Q 030996 69 VNKIFH---PNVDELSGSVCLDVI 89 (167)
Q Consensus 69 ~t~i~H---PnV~~~~G~iCl~~l 89 (167)
.|++|| +||+ .+|.||+...
T Consensus 89 ~T~Ly~aPf~NV~-~~g~vC~G~~ 111 (175)
T PF14460_consen 89 DTPLYHAPFFNVY-SNGSVCWGNN 111 (175)
T ss_pred CCeeEeCCccccC-CCCcEeeCCC
Confidence 345666 4898 6899999763
No 67
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=25.33 E-value=71 Score=27.49 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCCCCCCcceeccc
Q 030996 48 IWKIRVELPDAYPYKSPSIGFVNK 71 (167)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t~ 71 (167)
-+.+.+..+..||...|+|+...+
T Consensus 46 cvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 46 CVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEecCCCCCCcCCceEecCC
Confidence 467888899999999999998864
No 68
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=24.96 E-value=24 Score=33.98 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=0.0
Q ss_pred CEEEEEEEcCCCCCCCCCcceecc
Q 030996 47 GIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
.+=-|.|.+|.+||..+|.+.+.+
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~ 737 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDR 737 (799)
T ss_dssp ------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccH
Confidence 355688999999999999987754
No 69
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.57 E-value=1.1e+02 Score=28.56 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=6.2
Q ss_pred HHHCHHHHHHHHH
Q 030996 108 MMKDRKQYEQRVK 120 (167)
Q Consensus 108 ~~~n~~~f~~~~r 120 (167)
|.+|...|...-+
T Consensus 393 f~ene~kydaikk 405 (739)
T KOG2140|consen 393 FEENEEKYDAIKK 405 (739)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555433
No 70
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=24.01 E-value=82 Score=24.97 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.5
Q ss_pred CCEEEEEEEcCCCCCC-----CCCcceec
Q 030996 46 GGIWKIRVELPDAYPY-----KSPSIGFV 69 (167)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (167)
.|.|.|+-.+|--||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 88887766
No 71
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.07 E-value=96 Score=24.40 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=19.4
Q ss_pred CEEEEEEEcCCCCCC-----CCCcceec
Q 030996 47 GIWKIRVELPDAYPY-----KSPSIGFV 69 (167)
Q Consensus 47 g~f~~~i~fp~~YP~-----~pP~v~f~ 69 (167)
|.|.|.-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 889999999999995 77777665
No 72
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.66 E-value=2.5e+02 Score=26.37 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.2
Q ss_pred HHCHHHHHHHHHHHHHHHhccc
Q 030996 109 MKDRKQYEQRVKEYCERYAKKE 130 (167)
Q Consensus 109 ~~n~~~f~~~~r~~~~~~a~~~ 130 (167)
..|...|.+.++..........
T Consensus 180 ~~dQ~afa~~~~~~l~~l~~~~ 201 (600)
T TIGR01651 180 IDDQQAFARVVREMLRSMELAE 201 (600)
T ss_pred hhhHHHHHHHHHHHHHhhcccc
Confidence 5788999999999888777664
No 73
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=21.27 E-value=2.3e+02 Score=21.57 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=16.1
Q ss_pred ChhhHHHHHHHHHCHHHHHHHHHH
Q 030996 98 DPLNGDAASLMMKDRKQYEQRVKE 121 (167)
Q Consensus 98 ~p~n~eaa~~~~~n~~~f~~~~r~ 121 (167)
+|+..+.+-.|+-...+..++.++
T Consensus 116 DPFE~~L~~Iy~lGl~Eq~~Rl~r 139 (157)
T PF10293_consen 116 DPFESELGMIYRLGLDEQRERLER 139 (157)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHH
Confidence 799988888886665554444433
No 74
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=20.92 E-value=59 Score=26.81 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.1
Q ss_pred CCEEEEEEEcC
Q 030996 46 GGIWKIRVELP 56 (167)
Q Consensus 46 gg~f~~~i~fp 56 (167)
||...+.+.-|
T Consensus 56 ngkLyLymKtp 66 (303)
T COG5129 56 NGKLYLYMKTP 66 (303)
T ss_pred CCEEEEEecCh
Confidence 34445544443
No 75
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=20.70 E-value=77 Score=30.17 Aligned_cols=7 Identities=29% Similarity=0.301 Sum_probs=3.1
Q ss_pred HCHHHHH
Q 030996 110 KDRKQYE 116 (167)
Q Consensus 110 ~n~~~f~ 116 (167)
+++-+|.
T Consensus 909 ~DPi~Ff 915 (1001)
T COG5406 909 KDPISFF 915 (1001)
T ss_pred cCcHHHh
Confidence 4444443
No 76
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.29 E-value=77 Score=26.09 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHhcccCCCCCCCCCCccccccCCCCCCCCCCCCCCc
Q 030996 124 ERYAKKENISSINSEETDEDISNEDISDGQSTSSDDNI 161 (167)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (167)
++-.........+..+..+++++++.|+.++||++|++
T Consensus 109 k~~~~~~~~~~~d~Dd~~~~~~~~~~sd~~~d~~ddeD 146 (244)
T PF04889_consen 109 KKRRILEETRNIDADDSDDSEESDDESDDDSDDDDDED 146 (244)
T ss_pred hhhhhhhcccccccccccccccccccccccccccccch
Done!