Query 030996
Match_columns 167
No_of_seqs 129 out of 1322
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.6E-45 5.6E-50 285.1 14.7 130 1-131 1-153 (169)
2 2aak_A UBC1, ubiquitin conjuga 100.0 3.2E-43 1.1E-47 267.6 15.1 128 1-129 1-151 (152)
3 2c2v_B Ubiquitin-conjugating e 100.0 1.4E-43 4.8E-48 270.4 12.6 129 1-130 2-153 (154)
4 4gpr_A Ubiquitin-conjugating e 100.0 7.2E-43 2.4E-47 265.6 15.4 125 4-129 5-151 (151)
5 2bep_A Ubiquitin-conjugating e 100.0 6.2E-43 2.1E-47 267.9 14.8 129 1-129 5-159 (159)
6 1zdn_A Ubiquitin-conjugating e 100.0 5.7E-43 2E-47 268.0 13.9 123 4-127 14-158 (158)
7 3k9o_A Ubiquitin-conjugating e 100.0 9.8E-43 3.3E-47 276.0 15.4 132 1-132 2-159 (201)
8 1jat_A Ubiquitin-conjugating e 100.0 7.2E-43 2.5E-47 266.6 12.6 128 3-131 5-154 (155)
9 2r0j_A Ubiquitin carrier prote 100.0 1.3E-42 4.4E-47 263.6 13.5 125 4-129 2-148 (149)
10 2ucz_A UBC7, ubiquitin conjuga 100.0 2.3E-42 8E-47 266.1 14.8 127 1-128 1-164 (165)
11 2ayv_A Ubiquitin-conjugating e 100.0 3.5E-42 1.2E-46 265.7 15.5 123 4-127 22-166 (166)
12 1fxt_A Ubiquitin-conjugating e 100.0 8.3E-43 2.8E-47 264.6 11.5 125 4-128 2-149 (149)
13 1z2u_A Ubiquitin-conjugating e 100.0 3.3E-42 1.1E-46 261.6 14.7 124 4-128 5-150 (150)
14 2e2c_A Ubiquitin conjugating e 100.0 5.5E-42 1.9E-46 262.0 14.8 124 4-129 10-155 (156)
15 2c4o_A Ubiquitin-conjugating e 100.0 7.2E-42 2.5E-46 263.7 15.2 124 4-128 20-165 (165)
16 2gjd_A Ubiquitin-conjugating e 100.0 5.1E-42 1.7E-46 262.5 14.2 127 1-128 1-157 (157)
17 2pwq_A Ubiquitin conjugating e 100.0 3E-42 1E-46 276.0 13.1 130 4-133 24-175 (216)
18 2onu_A Ubiquitin-conjugating e 100.0 5.6E-43 1.9E-47 266.6 8.1 129 3-131 2-150 (152)
19 1yh2_A HSPC150 protein similar 100.0 1.1E-41 3.8E-46 263.5 15.5 127 4-131 5-157 (169)
20 3h8k_A Ubiquitin-conjugating e 100.0 1.4E-41 4.8E-46 261.4 15.6 124 4-128 4-163 (164)
21 3bzh_A Ubiquitin-conjugating e 100.0 8.1E-42 2.8E-46 269.6 14.1 124 4-128 49-194 (194)
22 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.1E-41 3.7E-46 268.7 14.7 125 4-128 33-192 (193)
23 2grr_A Ubiquitin-conjugating e 100.0 1.3E-41 4.3E-46 261.2 13.6 128 1-129 4-161 (161)
24 3e46_A Ubiquitin-conjugating e 100.0 2.2E-41 7.5E-46 276.5 15.4 132 1-132 54-211 (253)
25 3rcz_B SUMO-conjugating enzyme 100.0 2.1E-41 7.2E-46 260.7 14.1 124 4-128 11-163 (163)
26 1i7k_A Ubiquitin-conjugating e 100.0 3.1E-41 1.1E-45 263.3 12.7 125 4-130 31-177 (179)
27 1wzv_A Ubiquitin-conjugating e 100.0 5.8E-41 2E-45 255.9 13.5 126 4-131 5-154 (155)
28 2z5d_A Ubiquitin-conjugating e 100.0 1.2E-41 4.2E-46 265.5 8.5 128 4-132 26-173 (179)
29 1tte_A Ubiquitin-conjugating e 100.0 3.3E-41 1.1E-45 269.8 10.3 130 3-132 2-154 (215)
30 3fn1_B NEDD8-conjugating enzym 100.0 4.1E-40 1.4E-44 254.0 13.5 124 3-128 14-167 (167)
31 3rz3_A Ubiquitin-conjugating e 100.0 4.1E-40 1.4E-44 257.6 13.5 129 1-130 3-175 (183)
32 2y9m_A Ubiquitin-conjugating e 100.0 6.2E-40 2.1E-44 254.4 13.8 128 1-128 3-168 (172)
33 1yrv_A Ubiquitin-conjugating l 100.0 2.5E-40 8.5E-45 256.0 11.0 124 1-125 20-168 (169)
34 1y8x_A Ubiquitin-conjugating e 100.0 1.1E-39 3.7E-44 250.4 13.8 124 1-126 4-148 (160)
35 1yf9_A Ubiquitin carrier prote 100.0 4.1E-40 1.4E-44 255.3 10.2 127 4-131 13-159 (171)
36 1c4z_D UBCH7, ubiquitin conjug 100.0 3E-40 1E-44 251.8 8.2 126 4-131 3-152 (154)
37 2nvu_C NEDD8-conjugating enzym 100.0 6.2E-39 2.1E-43 250.4 13.3 122 4-127 27-169 (180)
38 2awf_A Ubiquitin-conjugating e 100.0 4.3E-39 1.5E-43 249.7 11.5 118 4-122 18-172 (172)
39 4ddg_A Ubiquitin-conjugating e 100.0 1.8E-38 6E-43 274.1 14.4 128 3-131 3-152 (399)
40 4ds2_A Ubiquitin-conjugating e 100.0 1.2E-38 4.2E-43 245.9 9.4 119 1-120 5-163 (167)
41 3o2u_A NEDD8-conjugating enzym 100.0 3.6E-38 1.2E-42 248.0 12.0 123 3-127 29-178 (190)
42 2fo3_A Ubiquitin-conjugating e 100.0 2.3E-35 7.7E-40 217.8 10.6 98 1-99 4-105 (125)
43 3ceg_A Baculoviral IAP repeat- 100.0 1.1E-34 3.9E-39 243.5 12.6 126 4-130 77-245 (323)
44 2h2y_A Ubiquitin-conjugating e 100.0 1.7E-34 5.8E-39 216.1 11.6 98 1-99 18-119 (136)
45 2a7l_A Hypothetical ubiquitin- 100.0 1.1E-34 3.7E-39 217.2 9.3 97 1-98 20-123 (136)
46 1jat_B Ubiquitin-conjugating e 100.0 3.6E-34 1.2E-38 214.7 5.5 96 1-97 2-108 (138)
47 2q0v_A Ubiquitin-conjugating e 100.0 6.6E-34 2.3E-38 217.4 5.9 106 4-111 22-156 (156)
48 2a4d_A Ubiquitin-conjugating e 100.0 3.7E-33 1.3E-37 214.1 8.4 95 4-98 26-129 (160)
49 2hlw_A Ubiquitin-conjugating e 100.0 8.3E-33 2.8E-37 214.0 5.0 95 4-98 36-139 (170)
50 1zuo_A Hypothetical protein LO 100.0 3E-33 1E-37 219.3 -0.5 127 1-128 24-182 (186)
51 2f4w_A Ubiquitin-conjugating e 100.0 1.3E-30 4.5E-35 204.4 11.6 91 4-97 15-111 (187)
52 2z6o_A UFM1-conjugating enzyme 99.9 9.2E-27 3.1E-31 178.1 0.3 102 5-110 34-161 (172)
53 3kpa_A Probable ubiquitin fold 99.7 2E-18 7E-23 129.6 -1.2 86 5-97 36-132 (168)
54 3r3q_A Suppressor protein STP2 99.5 7.8E-15 2.7E-19 112.3 5.3 89 6-96 31-139 (162)
55 3obq_A Tumor susceptibility ge 99.2 1.6E-11 5.5E-16 92.4 4.4 63 27-96 51-121 (146)
56 2ebm_A RWD domain-containing p 96.5 0.0057 2E-07 43.7 6.3 68 1-70 8-78 (128)
57 2yz0_A Serine/threonine-protei 94.7 0.1 3.4E-06 37.6 6.9 41 29-70 45-85 (138)
58 2ebk_A RWD domain-containing p 94.6 0.19 6.6E-06 35.6 8.1 64 6-70 10-79 (128)
59 2day_A Ring finger protein 25; 94.3 0.27 9.4E-06 34.7 8.3 66 5-70 10-82 (128)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 92.9 0.36 1.2E-05 34.4 7.0 64 4-69 11-85 (137)
61 2daw_A RWD domain containing p 89.2 0.43 1.5E-05 35.1 4.3 23 48-70 76-98 (154)
62 2dax_A Protein C21ORF6; RWD do 89.0 0.56 1.9E-05 34.2 4.8 23 48-70 74-96 (152)
63 2cwb_A Chimera of immunoglobul 78.2 0.43 1.5E-05 33.6 0.0 36 98-133 25-60 (108)
64 3zqs_A E3 ubiquitin-protein li 75.1 6.7 0.00023 30.0 5.9 59 6-71 4-62 (186)
65 2ca6_A RAN GTPase-activating p 36.0 21 0.00073 28.6 2.7 11 116-126 322-332 (386)
66 3rls_A YAF9, protein AF-9 homo 29.3 1.2E+02 0.0041 22.7 5.7 45 27-73 30-74 (175)
67 2bum_A Protocatechuate 3,4-dio 26.7 46 0.0016 25.6 3.0 26 45-70 109-139 (209)
68 3qrl_A Transcription initiatio 23.0 1.6E+02 0.0056 21.2 5.2 43 29-73 32-77 (140)
69 3c9p_A Uncharacterized protein 20.3 32 0.0011 24.3 0.9 31 71-107 67-99 (123)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-45 Score=285.11 Aligned_cols=130 Identities=32% Similarity=0.664 Sum_probs=124.3
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
|++ +.+||++||+.| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 886 899999999998 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 77 VDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 77 V~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
|+ .+|.|||++|.+.|+|++ +|+|.+||++|++|+++|.++||+|+++||....
T Consensus 81 I~-~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~ 153 (169)
T 1ayz_A 81 VY-ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDM 153 (169)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCc
Confidence 99 599999999999999999 8999999999999999999999999999998754
No 2
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=3.2e-43 Score=267.65 Aligned_cols=128 Identities=32% Similarity=0.700 Sum_probs=122.8
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
|++ +.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 886 899999999998 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 77 VDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 77 V~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
|+ .+|.||+++|.+.|+|++ +|+|.+||++|++|+++|.++||+|+++||..
T Consensus 81 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 81 IY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp BC-TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CC-CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 99 599999999999999998 89999999999999999999999999999865
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-43 Score=270.36 Aligned_cols=129 Identities=33% Similarity=0.631 Sum_probs=121.3
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
|+. +.+||++||++| ++.|+++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 454 789999999998 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Q 030996 77 VDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKE 130 (167)
Q Consensus 77 V~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~ 130 (167)
|+ .+|+|||++|++.|+|++ +|+|.+||++|++|+++|.++||+|+++||.++
T Consensus 82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~ 153 (154)
T 2c2v_B 82 VD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153 (154)
T ss_dssp BC-TTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred Cc-cCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence 99 689999999999999998 899999999999999999999999999999864
No 4
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=7.2e-43 Score=265.57 Aligned_cols=125 Identities=32% Similarity=0.773 Sum_probs=121.1
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
|.|||++||++| ++.|+++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|++|||||+ .
T Consensus 5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~-~ 83 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN-K 83 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceEC-C
Confidence 789999999999 688999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
+|+||+++|.++|+|++ +|+|.+||++|++|+++|.++||+|+++||.+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 88999999999999999999999999999963
No 5
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=6.2e-43 Score=267.95 Aligned_cols=129 Identities=26% Similarity=0.712 Sum_probs=122.5
Q ss_pred CCc-hHHHHHHHHHhcC------CCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccc
Q 030996 1 MSS-PCKRREMDVMKLM------MSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIF 73 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l~------~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (167)
|++ +.+||++||++|. +.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 665 7999999999982 679999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 74 HPNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
||||+..+|.|||++|.++|+|++ +|+|.+||++|++|++.|.++||+|+++||.+
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 999996689999999999999999 88999999999999999999999999999964
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-43 Score=267.97 Aligned_cols=123 Identities=27% Similarity=0.583 Sum_probs=119.2
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||+.| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+ .
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 92 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG-A 92 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC-C
Confidence 689999999998 688999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a 127 (167)
+|+||+++|.+.|+|++ +|+|.+||++|++|++.|.++||+|+++||
T Consensus 93 ~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 93 NGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 89999999999999998 889999999999999999999999999997
No 7
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=9.8e-43 Score=276.01 Aligned_cols=132 Identities=26% Similarity=0.674 Sum_probs=123.9
Q ss_pred CCc-hHHHHHHHHHhc------CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccc
Q 030996 1 MSS-PCKRREMDVMKL------MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIF 73 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l------~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (167)
|++ +.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 776 899999999998 2579999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCC
Q 030996 74 HPNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENI 132 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~ 132 (167)
||||+..+|.||+++|.++|+|++ +|+|.+||++|++|+++|.++||+|+++||.++..
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~~ 159 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVS 159 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccccc
Confidence 999995599999999999999999 89999999999999999999999999999998654
No 8
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=7.2e-43 Score=266.58 Aligned_cols=128 Identities=38% Similarity=0.729 Sum_probs=122.9
Q ss_pred chHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 3 SPCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
.+.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 83 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID- 83 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC-
Confidence 4789999999998 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 80 LSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
.+|.|||++|.++|+|++ +|+|.+||++|++|+++|.++||+|+++||.+++
T Consensus 84 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~~ 154 (155)
T 1jat_A 84 RLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKKP 154 (155)
T ss_dssp TTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEECC
T ss_pred CCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccCC
Confidence 799999999999999999 8899999999999999999999999999998764
No 9
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.3e-42 Score=263.63 Aligned_cols=125 Identities=30% Similarity=0.681 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||++| ++.|+++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+ .
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 80 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID-K 80 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCC-C
Confidence 469999999998 688999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
+|+||+++|++.|+|++ +|+|.+||++|++|+++|.++||+|+++||.+
T Consensus 81 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 81 LGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp TCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 89999999999999998 88999999999999999999999999999975
No 10
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-42 Score=266.11 Aligned_cols=127 Identities=28% Similarity=0.535 Sum_probs=120.0
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecC-CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPIN-DGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHP 75 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~-~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (167)
|++ +.+||++||++| ++.||++.+.+ +|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 887 899999999998 68899999876 6999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCC-------------CCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHH
Q 030996 76 NVDELSGSVCLDVI-------------NQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYC 123 (167)
Q Consensus 76 nV~~~~G~iCl~~l-------------~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~ 123 (167)
||+ .+|+|||++| .+.|+|++ +|+|.+||++|++|+++|.++||+|+
T Consensus 81 Nv~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~ 159 (165)
T 2ucz_A 81 NIY-PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159 (165)
T ss_dssp TBC-TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCC-CCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence 999 5899999999 67899999 88999999999999999999999999
Q ss_pred HHHhc
Q 030996 124 ERYAK 128 (167)
Q Consensus 124 ~~~a~ 128 (167)
++++.
T Consensus 160 ~~~~~ 164 (165)
T 2ucz_A 160 LKSLG 164 (165)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 99975
No 11
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-42 Score=265.72 Aligned_cols=123 Identities=35% Similarity=0.798 Sum_probs=119.5
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+ .
T Consensus 22 ~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~-~ 100 (166)
T 2ayv_A 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN-S 100 (166)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC-C
Confidence 789999999998 688999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a 127 (167)
+|.|||++|.++|+|++ +|+|.+||++|++|+++|.++||+|+++||
T Consensus 101 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 101 QGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999999999999 889999999999999999999999999997
No 12
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=8.3e-43 Score=264.60 Aligned_cols=125 Identities=30% Similarity=0.721 Sum_probs=119.7
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~-n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
+.+||++||+.| ++.|+++.+.++ |++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999998 678999999887 9999999999999999999999999999999999999999999999999995
Q ss_pred CCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 80 LSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
.+|.||+++|.++|+|++ +|+|.+||++|++|++.|.++||+|+++||.
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 599999999999999999 8999999999999999999999999999985
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=3.3e-42 Score=261.59 Aligned_cols=124 Identities=33% Similarity=0.773 Sum_probs=120.0
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||++| ++.|+++.+.++|++.|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+ .
T Consensus 5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 83 (150)
T 1z2u_A 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC-C
Confidence 789999999998 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
+|+||+++|.++|+|++ +|+|.+||++|++|+++|.++||+|+++||.
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999 8899999999999999999999999999984
No 14
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-42 Score=261.97 Aligned_cols=124 Identities=31% Similarity=0.646 Sum_probs=119.4
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||+.| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+ .
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~-~ 88 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD-Q 88 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc-c
Confidence 789999999998 688999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
+|.|||++|.+.|+|++ +|+|.+||++| +|+++|.++||+|+++|+..
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 89 SGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred CceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999 89999999999 89999999999999999853
No 15
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=7.2e-42 Score=263.69 Aligned_cols=124 Identities=33% Similarity=0.771 Sum_probs=120.0
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+ .
T Consensus 20 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~-~ 98 (165)
T 2c4o_A 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN-S 98 (165)
T ss_dssp HHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC-C
Confidence 789999999998 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
+|+||+++|.++|+|++ +|+|.+||++|++|+++|.++||+|+++||.
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998 8899999999999999999999999999984
No 16
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=5.1e-42 Score=262.46 Aligned_cols=127 Identities=28% Similarity=0.589 Sum_probs=119.0
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecC-----CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPIN-----DGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK 71 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~-----~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (167)
|++ +.+||++||++| ++.|+++.+.. .|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 886 899999999998 68899998875 389999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeEEccCCCC--CCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 72 IFHPNVDELSGSVCLDVINQ--TWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 72 i~HPnV~~~~G~iCl~~l~~--~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
+|||||+ .+|.||+++|.. +|+|++ +|+|.+||++|++|+++|.++||+|+++||+
T Consensus 81 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 81 FYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999 699999999987 799998 8899999999999999999999999999984
No 17
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3e-42 Score=276.00 Aligned_cols=130 Identities=25% Similarity=0.599 Sum_probs=122.9
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+..
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 789999999998 67899999999999999999999999999999999999999999999999999999999999966
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCCC
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENIS 133 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~~ 133 (167)
+|.|||++|++.|+|++ +|+|.+||++|++|++.|.++||+|+++||.++...
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~~ 175 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKEE 175 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC---
T ss_pred CCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCccc
Confidence 89999999999999998 889999999999999999999999999999987654
No 18
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=5.6e-43 Score=266.61 Aligned_cols=129 Identities=58% Similarity=1.075 Sum_probs=122.5
Q ss_pred chHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCCC
Q 030996 3 SPCKRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSG 82 (167)
Q Consensus 3 ~~~kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (167)
++.|||+|||+.|...|+++.+.++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+..+|
T Consensus 2 sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G 81 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG 81 (152)
T ss_dssp -CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTC
T ss_pred hHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCC
Confidence 47899999999997779999999999999999999999999999999999999999999999999999999999995589
Q ss_pred eEEccCCCCCCCCCC--------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 83 SVCLDVINQTWSPMF--------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 83 ~iCl~~l~~~W~p~~--------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
.||+++|.+.|+|++ +|+|.+||++|++|+++|.++||+|+++||.+..
T Consensus 82 ~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~~ 150 (152)
T 2onu_A 82 SVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKDL 150 (152)
T ss_dssp BBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred eEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCcc
Confidence 999999999999998 8899999999999999999999999999998754
No 19
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-41 Score=263.48 Aligned_cols=127 Identities=28% Similarity=0.636 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+ .
T Consensus 5 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~-~ 83 (169)
T 1yh2_A 5 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID-S 83 (169)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC-c
Confidence 789999999998 678999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCeEEccCCC----CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 81 SGSVCLDVIN----QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 81 ~G~iCl~~l~----~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
+|.|||++|+ +.|+|++ +|+|.+||++|++|+++|.++||+|+++||....
T Consensus 84 ~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~~ 157 (169)
T 1yh2_A 84 AGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQ 157 (169)
T ss_dssp TCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred CCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccccc
Confidence 9999999998 8999999 8899999999999999999999999999999654
No 20
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.4e-41 Score=261.43 Aligned_cols=124 Identities=27% Similarity=0.530 Sum_probs=118.9
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~-n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
|.|||++||+.| ++.||++.+.++ |++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+
T Consensus 4 a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~- 82 (164)
T 3h8k_A 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY- 82 (164)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCC-
Confidence 799999999999 688999998876 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-------------CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030996 80 LSGSVCLDVIN-------------QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 80 ~~G~iCl~~l~-------------~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a 127 (167)
.+|+||+++|. +.|+|++ +|+|.+||++|++|+++|.++||+|+++++
T Consensus 83 ~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~ 162 (164)
T 3h8k_A 83 PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL 162 (164)
T ss_dssp TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 69999999997 7899998 899999999999999999999999999987
Q ss_pred c
Q 030996 128 K 128 (167)
Q Consensus 128 ~ 128 (167)
.
T Consensus 163 ~ 163 (164)
T 3h8k_A 163 G 163 (164)
T ss_dssp T
T ss_pred c
Confidence 5
No 21
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=8.1e-42 Score=269.58 Aligned_cols=124 Identities=31% Similarity=0.713 Sum_probs=120.0
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||+.| ++.||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+ .
T Consensus 49 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~-~ 127 (194)
T 3bzh_A 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN-S 127 (194)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC-C
Confidence 689999999998 678999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
+|.|||++|.+.|+|++ +|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 128 ~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 128 QGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999 7899999999999999999999999999984
No 22
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-41 Score=268.67 Aligned_cols=125 Identities=30% Similarity=0.660 Sum_probs=118.3
Q ss_pred hHHHHHHHHHhc---CC-------------CCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcce
Q 030996 4 PCKRREMDVMKL---MM-------------SDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIG 67 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~-------------~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 67 (167)
+.+||++||+.| ++ .||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+
T Consensus 33 a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 112 (193)
T 2f4z_A 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 112 (193)
T ss_dssp HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEE
Confidence 679999999998 33 69999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 68 FVNKIFHPNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 68 f~t~i~HPnV~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
|.|+||||||+..+|.|||++|.+.|+|++ +|+|.+||++|++|+++|.++||+|+++||.
T Consensus 113 F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya~ 192 (193)
T 2f4z_A 113 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAK 192 (193)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred EecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 999999999996689999999999999999 8899999999999999999999999999996
No 23
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.3e-41 Score=261.25 Aligned_cols=128 Identities=28% Similarity=0.587 Sum_probs=120.1
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecC-----CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPIN-----DGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK 71 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~-----~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (167)
|++ +.+||++||++| ++.|+.+.+.. +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 775 789999999998 67899998863 589999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeEEccCCCC--CCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q 030996 72 IFHPNVDELSGSVCLDVINQ--TWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKK 129 (167)
Q Consensus 72 i~HPnV~~~~G~iCl~~l~~--~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~ 129 (167)
+|||||+ .+|.||+++|.. +|+|++ +|+|.+||++|++|+++|.++||+|+++||.+
T Consensus 84 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 84 LFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp CCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred cccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 9999999 699999999986 899998 88999999999999999999999999999863
No 24
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.2e-41 Score=276.55 Aligned_cols=132 Identities=26% Similarity=0.674 Sum_probs=125.0
Q ss_pred CCc-hHHHHHHHHHhc------CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccc
Q 030996 1 MSS-PCKRREMDVMKL------MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIF 73 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l------~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (167)
|++ +.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 555 799999999998 2579999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCC
Q 030996 74 HPNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENI 132 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~ 132 (167)
||||+..+|.|||++|.++|+|++ +|+|.+||++|++|++.|.++||+|+++||.++..
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~ 211 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVS 211 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCC
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccC
Confidence 999995689999999999999998 89999999999999999999999999999998654
No 25
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-41 Score=260.67 Aligned_cols=124 Identities=29% Similarity=0.609 Sum_probs=118.5
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCC-----CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccc
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPIND-----GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHP 75 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~-----n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (167)
|.+||+|||++| ++.|+++.+.++ |+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 799999999999 788999999876 999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEccCCCC--CCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 76 NVDELSGSVCLDVINQ--TWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 76 nV~~~~G~iCl~~l~~--~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
||+ .+|+||+++|.. +|+|++ +|+|.+||++|++|+++|.++||+|+++||.
T Consensus 91 nV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 91 NVY-PSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp TBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCC-CCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 999 799999999976 499999 8899999999999999999999999999983
No 26
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-41 Score=263.28 Aligned_cols=125 Identities=30% Similarity=0.608 Sum_probs=119.1
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||+.| ++.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||+ .
T Consensus 31 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~-~ 109 (179)
T 1i7k_A 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD-T 109 (179)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc-c
Confidence 789999999998 688999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhccc
Q 030996 81 SGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKE 130 (167)
Q Consensus 81 ~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~ 130 (167)
+|+|||++|.+.|+|++ +|+|.+||++| +|+++|.++|++++++++...
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~ 177 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ 177 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred CCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999 89999999999 999999999999999988753
No 27
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=5.8e-41 Score=255.94 Aligned_cols=126 Identities=25% Similarity=0.539 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhc---CCCCcEE-EecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 4 PCKRREMDVMKL---MMSDYSV-EPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v-~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
+.+||++||++| ++.|+.+ .+.++|+++|+++|. |++|||+||+|+|.|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~- 82 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD- 82 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC-
Confidence 689999999998 6789999 788899999999999 9999999999999999999999999999999999999999
Q ss_pred CCCeEEccCC-CCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 80 LSGSVCLDVI-NQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 80 ~~G~iCl~~l-~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
.+|.||+++| .++|+|++ +|+|.+||++|++|+++|.++||+|+++||.++.
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~~ 154 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDRP 154 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEECC
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 5999999999 89999998 8999999999999999999999999999998753
No 28
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=265.48 Aligned_cols=128 Identities=55% Similarity=1.072 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCCCe
Q 030996 4 PCKRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGS 83 (167)
Q Consensus 4 ~~kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~ 83 (167)
+.+||++||++|.+.|+++.+. +|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+..+|.
T Consensus 26 a~~RL~kEl~~l~~~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 26 GKRRMDTDVIKLIESKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHhcCcCCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 6899999999997789999987 679999999999999999999999999999999999999999999999999954999
Q ss_pred EEccCCCCCCCCCC--------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCC
Q 030996 84 VCLDVINQTWSPMF--------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENI 132 (167)
Q Consensus 84 iCl~~l~~~W~p~~--------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~ 132 (167)
||+++|.+.|+|++ +|+|.+||++|++|+++|.++||+|+++||.....
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~~~~ 173 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEAL 173 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSHHHH
T ss_pred EeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcccchh
Confidence 99999999999998 78999999999999999999999999999987543
No 29
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=3.3e-41 Score=269.81 Aligned_cols=130 Identities=30% Similarity=0.696 Sum_probs=122.4
Q ss_pred chHHHHHHHHHhc---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccccc
Q 030996 3 SPCKRREMDVMKL---MMSDYSVEPIND-GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVD 78 (167)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~~~v~~~~~-n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (167)
++.+||++||+.| ++.||++.+.++ +++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4789999999998 688999999876 466999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCC
Q 030996 79 ELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENI 132 (167)
Q Consensus 79 ~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~ 132 (167)
..+|.|||++|++.|+|++ +|+|.+||++|++|++.|.++||+|+++||.++..
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~ 154 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSN 154 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSC
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCc
Confidence 4499999999999999998 89999999999999999999999999999998754
No 30
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.1e-40 Score=254.01 Aligned_cols=124 Identities=29% Similarity=0.630 Sum_probs=116.5
Q ss_pred chHHHHHHHHHhc---CCCCcEEEec-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccccc
Q 030996 3 SPCKRREMDVMKL---MMSDYSVEPI-NDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVD 78 (167)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~~~v~~~-~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (167)
.+.|||++||+.| ++.||++.+. ++|++.|+++| ||++|||+||+|+|.|.||++||++||+|+|.|+||||||+
T Consensus 14 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 92 (167)
T 3fn1_B 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT 92 (167)
T ss_dssp HHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCC
Confidence 3789999999999 6789999965 57899999999 89999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCC------CCCCCC--------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 79 ELSGSVCLDVINQ------TWSPMF--------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 79 ~~~G~iCl~~l~~------~W~p~~--------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
.+|+||+++|.. +|+|++ +|+|.+||++|++|+++|.++||+|+++||.
T Consensus 93 -~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 93 -ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp -TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred -CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 699999999975 799998 6899999999999999999999999999984
No 31
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4.1e-40 Score=257.63 Aligned_cols=129 Identities=27% Similarity=0.594 Sum_probs=118.6
Q ss_pred CCc--hHHHHHHHHHhc---CCCCcEEE-ecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccc
Q 030996 1 MSS--PCKRREMDVMKL---MMSDYSVE-PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFH 74 (167)
Q Consensus 1 M~~--~~kRl~kEl~~l---~~~~~~v~-~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (167)
|++ +.|||++||+.| ++.||++. +.++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 554 899999999999 67899999 567899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEccCCC-------------CCCCCCC-------------------ChhhHHHHHHHHH------CHHHHH
Q 030996 75 PNVDELSGSVCLDVIN-------------QTWSPMF-------------------DPLNGDAASLMMK------DRKQYE 116 (167)
Q Consensus 75 PnV~~~~G~iCl~~l~-------------~~W~p~~-------------------~p~n~eaa~~~~~------n~~~f~ 116 (167)
|||+ .+|+||+++|. +.|+|++ +|+|.+||.+|++ ++++|.
T Consensus 83 PnV~-~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~ 161 (183)
T 3rz3_A 83 PNIY-ETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT 161 (183)
T ss_dssp TTBC-TTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred CCCC-CCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence 9999 59999999997 7899998 8999999999998 789999
Q ss_pred HHHHHHHHHHhccc
Q 030996 117 QRVKEYCERYAKKE 130 (167)
Q Consensus 117 ~~~r~~~~~~a~~~ 130 (167)
++||++++++...-
T Consensus 162 ~~v~~~v~~s~~~~ 175 (183)
T 3rz3_A 162 DIIRKQVLGTKVDA 175 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998743
No 32
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=6.2e-40 Score=254.36 Aligned_cols=128 Identities=27% Similarity=0.564 Sum_probs=117.1
Q ss_pred CCc-hHHHHHHHHHhcC-----------CC---CcEEEe-cCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC
Q 030996 1 MSS-PCKRREMDVMKLM-----------MS---DYSVEP-INDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSP 64 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l~-----------~~---~~~v~~-~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP 64 (167)
|++ +.+||++||+.|. +. ++.+.+ .++|+++|+++|.||++|||+||+|+|.|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 665 8999999999982 22 356677 7789999999999999999999999999999999999999
Q ss_pred cceecc-ccccccccCCCCeEEccCCC-CCCCCCC-------------------ChhhHHHHHHHHH-CHHHHHHHHHHH
Q 030996 65 SIGFVN-KIFHPNVDELSGSVCLDVIN-QTWSPMF-------------------DPLNGDAASLMMK-DRKQYEQRVKEY 122 (167)
Q Consensus 65 ~v~f~t-~i~HPnV~~~~G~iCl~~l~-~~W~p~~-------------------~p~n~eaa~~~~~-n~~~f~~~~r~~ 122 (167)
+|+|.| +||||||+..+|+|||++|. +.|+|++ +|+|.+||++|++ |+++|.++||+|
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~ 162 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 162 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 99999996469999999998 8999999 8999999999999 999999999999
Q ss_pred HHHHhc
Q 030996 123 CERYAK 128 (167)
Q Consensus 123 ~~~~a~ 128 (167)
+++++.
T Consensus 163 ~~~~~~ 168 (172)
T 2y9m_A 163 LAERER 168 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999986
No 33
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-40 Score=256.04 Aligned_cols=124 Identities=26% Similarity=0.594 Sum_probs=116.4
Q ss_pred CCc-hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 1 MSS-PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
|++ +.+||++||+.| ++.||++.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+|||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 676 789999999999 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC--CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHH
Q 030996 77 VDELSGSVCLDVIN--QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCER 125 (167)
Q Consensus 77 V~~~~G~iCl~~l~--~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~ 125 (167)
|+..+|.|||++|. ++|+|++ +|+|.+||++|++|+++|.++ ++++++
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 93379999999998 8999999 899999999999999999998 888754
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-39 Score=250.38 Aligned_cols=124 Identities=27% Similarity=0.600 Sum_probs=116.5
Q ss_pred CCchHHHHHHHHHhc-CCCCcEEE-ecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccccc
Q 030996 1 MSSPCKRREMDVMKL-MMSDYSVE-PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVD 78 (167)
Q Consensus 1 M~~~~kRl~kEl~~l-~~~~~~v~-~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (167)
|+.+.+||++||++| ++.|+++. +.++|++.|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (160)
T 1y8x_A 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82 (160)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence 345899999999999 67799998 6788999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030996 79 ELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERY 126 (167)
Q Consensus 79 ~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~ 126 (167)
.+|.||+++|.+.|+|++ +|+|.+||++|++|+++|.++||+|++..
T Consensus 83 -~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~ 148 (160)
T 1y8x_A 83 -LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 148 (160)
T ss_dssp -TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred -CCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 589999999999999999 89999999999999999999999998753
No 35
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-40 Score=255.26 Aligned_cols=127 Identities=52% Similarity=0.900 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCCCe
Q 030996 4 PCKRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGS 83 (167)
Q Consensus 4 ~~kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~ 83 (167)
+.+||++||+.|....+.+ ..++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+..+|.
T Consensus 13 ~~~RL~~El~~l~~~~~~v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp CCHHHHHHHHHHHSSSSCE-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHHHhCCCCC-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5899999999994333445 357899999999999999999999999999999999999999999999999999955999
Q ss_pred EEccCCCCCCCCCC--------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 84 VCLDVINQTWSPMF--------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 84 iCl~~l~~~W~p~~--------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
||+++|.+.|+|++ +|+|.+||++|++|++.|.++||+|+++||....
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~~~ 159 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQK 159 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHHH
T ss_pred EeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcChhh
Confidence 99999999999998 8899999999999999999999999999998654
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3e-40 Score=251.77 Aligned_cols=126 Identities=30% Similarity=0.640 Sum_probs=113.4
Q ss_pred hHHHHHHHHHhc---CCCCcEEEe-cCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEP-INDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~-~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
+.+||++||++| ++.|+.+.+ .++|++.|+++|. |++|||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~- 80 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID- 80 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC-
Confidence 579999999999 567887554 6779999999998 9999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-CCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 80 LSGSVCLDVIN-QTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 80 ~~G~iCl~~l~-~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
.+|.||+++|. ++|+|++ +|+|.+||++|++|+++|.++||+|+++||.++.
T Consensus 81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~~ 152 (154)
T 1c4z_D 81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152 (154)
T ss_dssp TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC-----
T ss_pred CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccCC
Confidence 69999999996 8999998 8999999999999999999999999999998764
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.2e-39 Score=250.44 Aligned_cols=122 Identities=25% Similarity=0.567 Sum_probs=115.7
Q ss_pred hHHHHHHHHHhc-CCCCcEEE-ecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCCC
Q 030996 4 PCKRREMDVMKL-MMSDYSVE-PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELS 81 (167)
Q Consensus 4 ~~kRl~kEl~~l-~~~~~~v~-~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (167)
+.+||++||++| +++|+++. +.++|++.|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|||||+ .+
T Consensus 27 ~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~-~~ 104 (180)
T 2nvu_C 27 AQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID-LE 104 (180)
T ss_dssp HHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC-TT
T ss_pred HHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCC-CC
Confidence 789999999999 67799998 6788999999998 99999999999999999999999999999999999999999 58
Q ss_pred CeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030996 82 GSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 82 G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a 127 (167)
|.||+++|.+.|+|++ +|+|.+||.+|++|++.|.++||+|++...
T Consensus 105 G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~~ 169 (180)
T 2nvu_C 105 GNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGY 169 (180)
T ss_dssp SBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSEE
T ss_pred CcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhCC
Confidence 9999999999999999 889999999999999999999999988543
No 38
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=4.3e-39 Score=249.68 Aligned_cols=118 Identities=31% Similarity=0.696 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecC-CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPIN-DGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~-~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
+.|||+|||++| ++.||++.+.+ +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 18 ~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~- 96 (172)
T 2awf_A 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD- 96 (172)
T ss_dssp THHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCC-
Confidence 799999999998 78899999876 6999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCC-------------CCCCCCC-------------------ChhhHHHHHHHHHCHH-HHHHHHHHH
Q 030996 80 LSGSVCLDVIN-------------QTWSPMF-------------------DPLNGDAASLMMKDRK-QYEQRVKEY 122 (167)
Q Consensus 80 ~~G~iCl~~l~-------------~~W~p~~-------------------~p~n~eaa~~~~~n~~-~f~~~~r~~ 122 (167)
.+|+||+++|. +.|+|++ +|+|.+||++|++|++ +|.++||+|
T Consensus 97 ~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 97 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 58999999996 6899999 8999999999999999 999999975
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.8e-38 Score=274.05 Aligned_cols=128 Identities=31% Similarity=0.711 Sum_probs=123.1
Q ss_pred chHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccC
Q 030996 3 SPCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDE 79 (167)
Q Consensus 3 ~~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (167)
.|.|||++||+.| ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~- 81 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN- 81 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC-
Confidence 4789999999999 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccC
Q 030996 80 LSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKEN 131 (167)
Q Consensus 80 ~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~ 131 (167)
.+|.||+++|.++|+|++ +|+|.+||++|++|+++|.++||+|+++||....
T Consensus 82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~v 152 (399)
T 4ddg_A 82 SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGGS 152 (399)
T ss_dssp TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCTT
T ss_pred CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcccc
Confidence 699999999999999999 8999999999999999999999999999998653
No 40
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.2e-38 Score=245.89 Aligned_cols=119 Identities=28% Similarity=0.500 Sum_probs=113.8
Q ss_pred CCc-hHHHHHHHHHhc---C------------CCCcEEEecCCCceEEEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCC
Q 030996 1 MSS-PCKRREMDVMKL---M------------MSDYSVEPINDGISELKVEFHGPKDSLYE--GGIWKIRVELPDAYPYK 62 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~------------~~~~~v~~~~~n~~~w~~~i~Gp~~tpye--gg~f~~~i~fp~~YP~~ 62 (167)
|++ +.|||++||+.| + +.++.+.+.++|+++|+++|.||++|||+ ||+|+|.|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 776 899999999998 4 56899999999999999999999999999 99999999999999999
Q ss_pred CCcceeccccccccccCCCCeEEccCCCCCCCCCC----------------------ChhhHHHHHHHHHCHHHHHHHHH
Q 030996 63 SPSIGFVNKIFHPNVDELSGSVCLDVINQTWSPMF----------------------DPLNGDAASLMMKDRKQYEQRVK 120 (167)
Q Consensus 63 pP~v~f~t~i~HPnV~~~~G~iCl~~l~~~W~p~~----------------------~p~n~eaa~~~~~n~~~f~~~~r 120 (167)
||+|+|.|++|||||+ .+|.||+++|.++|+|++ +|+|.+||++|++|+++|.++||
T Consensus 85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 9999999999999999 799999999999999998 78999999999999999999998
No 41
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.6e-38 Score=247.99 Aligned_cols=123 Identities=31% Similarity=0.616 Sum_probs=115.7
Q ss_pred chHHHHHHHHHhc-CCCCcEEE----ecCCCce---EEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccc
Q 030996 3 SPCKRREMDVMKL-MMSDYSVE----PINDGIS---ELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFH 74 (167)
Q Consensus 3 ~~~kRl~kEl~~l-~~~~~~v~----~~~~n~~---~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (167)
.+.+||++||++| +++|+++. +.++|++ .|+++|. |++|||+||+|+|.|.||++||++||+|+|.|++||
T Consensus 29 ~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 107 (190)
T 3o2u_A 29 AARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFH 107 (190)
T ss_dssp HHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCC
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCccc
Confidence 4799999999999 67799998 7788999 9999996 888999999999999999999999999999999999
Q ss_pred ccccCCCCeEEccCCCCCCCCCC-------------------ChhhHHHHHHHHHCHHHHHHHHHHHHHHHh
Q 030996 75 PNVDELSGSVCLDVINQTWSPMF-------------------DPLNGDAASLMMKDRKQYEQRVKEYCERYA 127 (167)
Q Consensus 75 PnV~~~~G~iCl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a 127 (167)
|||+ .+|.||+++|.++|+|++ +|+|.+||++|++|+++|.++||+|++...
T Consensus 108 PnV~-~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~ 178 (190)
T 3o2u_A 108 PNID-LKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS 178 (190)
T ss_dssp TTBC-TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCE
T ss_pred CCCC-CCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcC
Confidence 9999 699999999999999998 899999999999999999999999996543
No 42
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=2.3e-35 Score=217.84 Aligned_cols=98 Identities=21% Similarity=0.496 Sum_probs=89.0
Q ss_pred CCchHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccc-cccc
Q 030996 1 MSSPCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKI-FHPN 76 (167)
Q Consensus 1 M~~~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPn 76 (167)
|+++.+||++||++| ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++ ||||
T Consensus 4 m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 83 (125)
T 2fo3_A 4 MGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH 83 (125)
T ss_dssp -----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence 777899999999998 677999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCCCeEEccCCCCCCCCCCCh
Q 030996 77 VDELSGSVCLDVINQTWSPMFDP 99 (167)
Q Consensus 77 V~~~~G~iCl~~l~~~W~p~~~p 99 (167)
|+ .+|+||+++|.++|+|+++.
T Consensus 84 v~-~~G~iCl~iL~~~W~P~~~i 105 (125)
T 2fo3_A 84 VY-SNGDICLSLLGDDYNPSLSI 105 (125)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCH
T ss_pred CC-CCCEEEchhcCCCCCCCCcH
Confidence 99 69999999999999999943
No 43
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=243.46 Aligned_cols=126 Identities=23% Similarity=0.489 Sum_probs=114.7
Q ss_pred hHHHHHHHHHhc---CCC----CcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc-----
Q 030996 4 PCKRREMDVMKL---MMS----DYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK----- 71 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~----~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~----- 71 (167)
+.+||++||+.| ++. ++.+.+.++|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 799999999998 444 45577889999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCeEEccCCC-------CCCCCCC----------------------ChhhHHH--HHHHHHCHHHHHHHHH
Q 030996 72 IFHPNVDELSGSVCLDVIN-------QTWSPMF----------------------DPLNGDA--ASLMMKDRKQYEQRVK 120 (167)
Q Consensus 72 i~HPnV~~~~G~iCl~~l~-------~~W~p~~----------------------~p~n~ea--a~~~~~n~~~f~~~~r 120 (167)
+|||||+ .+|+|||++|. +.|+|++ +|+|.++ +.++.+|++.|.++||
T Consensus 157 ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr 235 (323)
T 3ceg_A 157 RFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIR 235 (323)
T ss_dssp CCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHH
T ss_pred cccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHH
Confidence 9999999 69999999997 6899986 6777776 5789999999999999
Q ss_pred HHHHHHhccc
Q 030996 121 EYCERYAKKE 130 (167)
Q Consensus 121 ~~~~~~a~~~ 130 (167)
.|+++||+..
T Consensus 236 ~~t~k~A~~~ 245 (323)
T 3ceg_A 236 QATVKWAMLE 245 (323)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHHhhHH
Confidence 9999999753
No 44
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.7e-34 Score=216.08 Aligned_cols=98 Identities=22% Similarity=0.498 Sum_probs=92.2
Q ss_pred CCchHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccc-cccc
Q 030996 1 MSSPCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKI-FHPN 76 (167)
Q Consensus 1 M~~~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPn 76 (167)
|+.+.+||++||++| ++.|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 97 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH 97 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence 455889999999998 678999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCCCeEEccCCCCCCCCCCCh
Q 030996 77 VDELSGSVCLDVINQTWSPMFDP 99 (167)
Q Consensus 77 V~~~~G~iCl~~l~~~W~p~~~p 99 (167)
|+ .+|+||+++|.++|+|+++.
T Consensus 98 v~-~~G~ICl~iL~~~WsP~~ti 119 (136)
T 2h2y_A 98 VY-SNGDICLSVLGDDYNPSLSI 119 (136)
T ss_dssp BC-TTCCBCCGGGTTTCCTTCCH
T ss_pred CC-CCCEEECccccCCCCCCCcH
Confidence 99 69999999999999999943
No 45
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-34 Score=217.22 Aligned_cols=97 Identities=27% Similarity=0.639 Sum_probs=91.2
Q ss_pred CCchHHHHHHHHHhc---CCCCcEEE--ecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccc--
Q 030996 1 MSSPCKRREMDVMKL---MMSDYSVE--PINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIF-- 73 (167)
Q Consensus 1 M~~~~kRl~kEl~~l---~~~~~~v~--~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~-- 73 (167)
|+++++||+|||++| ++.|+++. +.++|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 776679999999998 67899865 77889999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEccCCCCCCCCCCC
Q 030996 74 HPNVDELSGSVCLDVINQTWSPMFD 98 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l~~~W~p~~~ 98 (167)
||||+ .+|+||+++|+++|+|+++
T Consensus 100 HPNV~-~~G~ICL~iL~~~WsP~~t 123 (136)
T 2a7l_A 100 HPHVY-SNGHICLSILTEDWSPALS 123 (136)
T ss_dssp BTTBC-TTCBBCCGGGTTTCCTTSC
T ss_pred CccCC-CCCeEEchhcCCCCCCCCc
Confidence 99999 6999999999999999995
No 46
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=3.6e-34 Score=214.66 Aligned_cols=96 Identities=23% Similarity=0.355 Sum_probs=85.6
Q ss_pred CCc--hHHHHHHHHHhc----CCCCcEEEecC-C--CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc
Q 030996 1 MSS--PCKRREMDVMKL----MMSDYSVEPIN-D--GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK 71 (167)
Q Consensus 1 M~~--~~kRl~kEl~~l----~~~~~~v~~~~-~--n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (167)
|++ +.+||+|||++| ++.|+++.+.. + |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 775 789999999998 46699999854 3 59999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeE--EccCCCCCCCCCC
Q 030996 72 IFHPNVDELSGSV--CLDVINQTWSPMF 97 (167)
Q Consensus 72 i~HPnV~~~~G~i--Cl~~l~~~W~p~~ 97 (167)
||||||+..+|+| ||++|. +|+|++
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~ 108 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAY 108 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTC
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcC
Confidence 9999999656999 999886 899999
No 47
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=6.6e-34 Score=217.44 Aligned_cols=106 Identities=19% Similarity=0.319 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhc----CCCCcEEEecC-C--CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 4 PCKRREMDVMKL----MMSDYSVEPIN-D--GISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 4 ~~kRl~kEl~~l----~~~~~~v~~~~-~--n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
+.+||++||++| ++.|+++.+.. + |++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 22 ~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 101 (156)
T 2q0v_A 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSC 101 (156)
T ss_dssp HHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCC
Confidence 789999999998 46689998854 3 5999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeE---EccCCCCCCCCCC-------------------ChhhHHHHHHHHHC
Q 030996 77 VDELSGSV---CLDVINQTWSPMF-------------------DPLNGDAASLMMKD 111 (167)
Q Consensus 77 V~~~~G~i---Cl~~l~~~W~p~~-------------------~p~n~eaa~~~~~n 111 (167)
|+ .+|+| |+++|. +|+|++ +|+|++||.+|.+|
T Consensus 102 V~-~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 102 VD-NCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp BC-TTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred Cc-cCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 99 58999 888887 599999 66777777766543
No 48
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.98 E-value=3.7e-33 Score=214.10 Aligned_cols=95 Identities=21% Similarity=0.327 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhc---CCCC-cEEEec-CCC--ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 4 PCKRREMDVMKL---MMSD-YSVEPI-NDG--ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~-~~v~~~-~~n--~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
+.+||+|||++| ++.| +++.+. ++| ++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 789999999998 4566 778874 454 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC--CCCCCCCC
Q 030996 77 VDELSGSVCLDVIN--QTWSPMFD 98 (167)
Q Consensus 77 V~~~~G~iCl~~l~--~~W~p~~~ 98 (167)
|+..+|+||+++|. +.|+|+++
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~t 129 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYS 129 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCC
T ss_pred EECCCCEEehhhcCCccCCCccCc
Confidence 98669999999998 89999993
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.97 E-value=8.3e-33 Score=214.01 Aligned_cols=95 Identities=21% Similarity=0.323 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhc---CCCC-cEEEe-cCCC--ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecccccccc
Q 030996 4 PCKRREMDVMKL---MMSD-YSVEP-INDG--ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPN 76 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~-~~v~~-~~~n--~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (167)
+.+||++||++| ++.| +++.+ .++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 689999999998 4556 67887 4454 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEccCCC--CCCCCCCC
Q 030996 77 VDELSGSVCLDVIN--QTWSPMFD 98 (167)
Q Consensus 77 V~~~~G~iCl~~l~--~~W~p~~~ 98 (167)
|+..+|+||+++|. +.|+|+++
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~t 139 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYS 139 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCC
T ss_pred EeCCCCEEEhhhcCCCCCCCccCc
Confidence 98569999999998 89999993
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=3e-33 Score=219.25 Aligned_cols=127 Identities=20% Similarity=0.333 Sum_probs=107.3
Q ss_pred CCc-hHHHHHHHHHhc---C---CCCcEEEecCCCceEEEEEEeCC-CCCCCCC-----------CEEEEEEEcCCCCCC
Q 030996 1 MSS-PCKRREMDVMKL---M---MSDYSVEPINDGISELKVEFHGP-KDSLYEG-----------GIWKIRVELPDAYPY 61 (167)
Q Consensus 1 M~~-~~kRl~kEl~~l---~---~~~~~v~~~~~n~~~w~~~i~Gp-~~tpyeg-----------g~f~~~i~fp~~YP~ 61 (167)
|++ +.+||++||++| + +.++++.+.++|++.|+++|.|| ++|||+| |+|+|.|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 444 789999999999 3 47899999999999999999998 9999998 899999999999999
Q ss_pred CCCcceeccccccc-cccCCCCeEEccCCC-CCCCCCCChh-----------hHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q 030996 62 KSPSIGFVNKIFHP-NVDELSGSVCLDVIN-QTWSPMFDPL-----------NGDAASLMMKDRKQYEQRVKEYCERYAK 128 (167)
Q Consensus 62 ~pP~v~f~t~i~HP-nV~~~~G~iCl~~l~-~~W~p~~~p~-----------n~eaa~~~~~n~~~f~~~~r~~~~~~a~ 128 (167)
+||+|+|.|++||| ||+ .+|.|||++|. ++|+|+++.. +++++..|..++.+|.++++..+.+.+.
T Consensus 104 ~PP~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~~~~~~~~~Y~~~~~~~~~~~~~ 182 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIV 182 (186)
T ss_dssp SCCEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCHHHHHHHHHHHH
T ss_pred CCCeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhHhhccCHHHHhHHHHHHHHHHHH
Confidence 99999999999999 699 69999999997 7999999221 1223334445678888888888776653
No 51
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=1.3e-30 Score=204.41 Aligned_cols=91 Identities=25% Similarity=0.583 Sum_probs=80.8
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccccccccCC
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEL 80 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (167)
+.+||++||++| ++.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ ||||+ .
T Consensus 15 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~-~ 91 (187)
T 2f4w_A 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK-C 91 (187)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec-c
Confidence 789999999998 67899999999999999999999999999999999999999999999999999998 99999 5
Q ss_pred CCeEEccCC---CCCCCCCC
Q 030996 81 SGSVCLDVI---NQTWSPMF 97 (167)
Q Consensus 81 ~G~iCl~~l---~~~W~p~~ 97 (167)
+|+|||++| .+.|+|++
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ 111 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAW 111 (187)
T ss_dssp TSCBC----------CCTTC
T ss_pred CCeEeeeccccCccCCCCcC
Confidence 999999999 68999999
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.92 E-value=9.2e-27 Score=178.08 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCcceeccc-cc
Q 030996 5 CKRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGG----------IWKIRVELPDAYPYKSPSIGFVNK-IF 73 (167)
Q Consensus 5 ~kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (167)
.+||++|+++|.. ++.+..+|+..|.+++.||.||+|+|| .|.++|.||.+||++||+|+|.+. +|
T Consensus 34 ~~RL~eE~k~L~k---~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~ 110 (172)
T 2z6o_A 34 VQRLKEEYQSLIR---YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK 110 (172)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence 8999999999854 356667899999999999999999999 999999999999999999999998 99
Q ss_pred cccccCCCCeEEccCC-CC---CCCCCC-----------ChhhHHHHHHHHH
Q 030996 74 HPNVDELSGSVCLDVI-NQ---TWSPMF-----------DPLNGDAASLMMK 110 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l-~~---~W~p~~-----------~p~n~eaa~~~~~ 110 (167)
||||| .+|+|||++| +. .|.|++ .++..|+..+..+
T Consensus 111 hpnmY-~~G~ICLdIL~kp~Ws~~~P~~~IahiL~lgl~pwla~eip~lv~~ 161 (172)
T 2z6o_A 111 TAKMY-RGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQK 161 (172)
T ss_dssp CSSBC-TTSBBCCCTTHHHHHHHHTTSCCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCCC-CCCcEechhhccccccccCCccCHHHHHhhccCchhhhhhHHHHHc
Confidence 99999 5899999999 44 455999 4566677766544
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.67 E-value=2e-18 Score=129.57 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCcceeccc-cc
Q 030996 5 CKRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGG----------IWKIRVELPDAYPYKSPSIGFVNK-IF 73 (167)
Q Consensus 5 ~kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (167)
.+||..||+.|.. +|+....+-..|...+.||.||+|.|+ .|.+.|.||.+||..||.|+|.+. ++
T Consensus 36 ~~RlkeEy~alI~---yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 36 TARLKEEYASLIT---YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 5799999998721 123333445679999999999999999 999999999999999999999995 89
Q ss_pred cccccCCCCeEEccCCCCCCCCCC
Q 030996 74 HPNVDELSGSVCLDVINQTWSPMF 97 (167)
Q Consensus 74 HPnV~~~~G~iCl~~l~~~W~p~~ 97 (167)
|||+| .+|+|||+++ |+|.+
T Consensus 113 t~kmY-r~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 113 TVKMY-RGGKICMTTH---FFPLW 132 (168)
T ss_dssp CSSEE-TTTEECCCTT---HHHHH
T ss_pred Ccccc-CCCcEEeccc---cchhh
Confidence 99999 6999999996 88887
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.52 E-value=7.8e-15 Score=112.26 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=70.7
Q ss_pred HHHHHHHHhc--CCCC----cEEEecCCCceEEEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCcceecc------
Q 030996 6 KRREMDVMKL--MMSD----YSVEPINDGISELKVEFHGPKDSLYEGGI---WKIRVELPDAYPYKSPSIGFVN------ 70 (167)
Q Consensus 6 kRl~kEl~~l--~~~~----~~v~~~~~n~~~w~~~i~Gp~~tpyegg~---f~~~i~fp~~YP~~pP~v~f~t------ 70 (167)
+|..+|+..+ .-++ ..+...++....+.+.+.|+-.++|+|+. |.+.|.||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 5666776665 2223 33445667777788888888889999999 8899999999999999998865
Q ss_pred -c---cc-cccccCCCCeEEccCCCCCCCCC
Q 030996 71 -K---IF-HPNVDELSGSVCLDVINQTWSPM 96 (167)
Q Consensus 71 -~---i~-HPnV~~~~G~iCl~~l~~~W~p~ 96 (167)
+ |+ ||||+ .+|+||+++|. +|+|.
T Consensus 111 ~~~~~I~~hpnVD-~~G~I~lpyL~-~W~p~ 139 (162)
T 3r3q_A 111 TISSSLPIQEYID-SNGWIALPILH-AWDPA 139 (162)
T ss_dssp TSCTTSTHHHHBC-TTSBBCCGGGG-SCCGG
T ss_pred ccccccCCCCCCC-CCCcEeCcccc-cCCCC
Confidence 1 77 99999 69999999995 69994
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.17 E-value=1.6e-11 Score=92.38 Aligned_cols=63 Identities=27% Similarity=0.502 Sum_probs=55.2
Q ss_pred CCceEEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCcceeccc------cccccccCCCCeEEccCCCCCCCCC
Q 030996 27 DGISELKVEFHGPKDSLYEGGIWK--IRVELPDAYPYKSPSIGFVNK------IFHPNVDELSGSVCLDVINQTWSPM 96 (167)
Q Consensus 27 ~n~~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~------i~HPnV~~~~G~iCl~~l~~~W~p~ 96 (167)
.+++.|.++|. .+|+|+.|. +.|.||.+||++||.| |.++ ..||||+ .+|+||+..|.+ |++.
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd-~~G~i~lpyL~~-W~~~ 121 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVD-ANGKIYLPYLHE-WKHP 121 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBC-TTCBBCCHHHHT-CCTT
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCC-CCCCEecccccc-cCCC
Confidence 47899999996 789999998 4999999999999999 5544 4899999 699999999965 9884
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.0057 Score=43.67 Aligned_cols=68 Identities=9% Similarity=0.191 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHhc---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecc
Q 030996 1 MSSPCKRREMDVMKL---MMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 1 M~~~~kRl~kEl~~l---~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
|.....+...|+..| -+..+. ........+.+.|..-.+..-..-.+.+.|.||++||..||.|.+..
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~--~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFT--VLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEE--ECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceE--EccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 333456677888877 233333 23333456666665222222223478999999999999999988654
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.1 Score=37.56 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=29.2
Q ss_pred ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecc
Q 030996 29 ISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 29 ~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
...+.+.|....+ .-..-.+.+.|.||++||..||.|.+..
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4567777763322 1113478899999999999999998764
No 58
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.59 E-value=0.19 Score=35.59 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHHHHHHhc----CC-CCcEE-EecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceecc
Q 030996 6 KRREMDVMKL----MM-SDYSV-EPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 6 kRl~kEl~~l----~~-~~~~v-~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
.+...|+..| .. .-+.+ .-...+...+.+.|.... ..=..-.+.+.|.||.+||..||.|.+.+
T Consensus 10 e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~-~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 10 EPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEG-FMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCT-TTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCC-CCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 4566777776 32 23432 212233567777776322 10012378999999999999999997653
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=94.26 E-value=0.27 Score=34.66 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=40.5
Q ss_pred HHHHHHHHHhc---CCCCcEEEecC--CCceEEEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCCCCcceecc
Q 030996 5 CKRREMDVMKL---MMSDYSVEPIN--DGISELKVEFHGPKDSLYE--GGIWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 5 ~kRl~kEl~~l---~~~~~~v~~~~--~n~~~w~~~i~Gp~~tpye--gg~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
..++..|+..| -+..+.+.-.. .....+.+.|..+.+..-+ .-.+.+.|.||++||..+|.|.+.+
T Consensus 10 ~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 10 DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 35677888777 23344332211 2345566666533221111 2378899999999999999998765
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=92.92 E-value=0.36 Score=34.39 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCC------CceEEEEEEeCCCC-C-CCCCCEEEEEEEcCCCCCCCCCcceec
Q 030996 4 PCKRREMDVMKL---MMSDYSVEPIND------GISELKVEFHGPKD-S-LYEGGIWKIRVELPDAYPYKSPSIGFV 69 (167)
Q Consensus 4 ~~kRl~kEl~~l---~~~~~~v~~~~~------n~~~w~~~i~Gp~~-t-pyegg~f~~~i~fp~~YP~~pP~v~f~ 69 (167)
...+...|+..| -...+.+ .... ....+.+.|. |.+ . .-..-.+.+.|.||++||..+|.|.+.
T Consensus 11 ~~e~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 11 YSQRQDHELQALEAIYGSDFQD-LRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp HHHHHHHHHHHHHHHTSSSEEE-CCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred hHHHHHHHHHHHHHHCccccee-ccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 345666787777 2223332 1111 1345666664 221 0 001236899999999999999999874
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.18 E-value=0.43 Score=35.13 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEEEcCCCCCCCCCcceecc
Q 030996 48 IWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
.+.+.|.+|.+||..+|.|....
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998655
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.05 E-value=0.56 Score=34.24 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEEEcCCCCCCCCCcceecc
Q 030996 48 IWKIRVELPDAYPYKSPSIGFVN 70 (167)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t 70 (167)
.+.+.|.+|.+||..||.|....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 58899999999999999998665
No 63
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=78.24 E-value=0.43 Score=33.56 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHCHHHHHHHHHHHHHHHhcccCCC
Q 030996 98 DPLNGDAASLMMKDRKQYEQRVKEYCERYAKKENIS 133 (167)
Q Consensus 98 ~p~n~eaa~~~~~n~~~f~~~~r~~~~~~a~~~~~~ 133 (167)
.|.+..+|++|.++++.|...+|.|+.-+|......
T Consensus 25 ~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~~~~~~ 60 (108)
T 2cwb_A 25 EAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV 60 (108)
T ss_dssp ------------------------------------
T ss_pred CchhHHHHHHHHhchhccccccccccccCcCCCCCC
Confidence 789999999999999999999999997777654443
No 64
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=75.13 E-value=6.7 Score=29.97 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccc
Q 030996 6 KRREMDVMKLMMSDYSVEPINDGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNK 71 (167)
Q Consensus 6 kRl~kEl~~l~~~~~~v~~~~~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (167)
.||.+|+..|-=.- +.-.+.++....+.+..-. |....++|.++.+||.++|.+...-+
T Consensus 4 ~~li~Ei~~iGW~~--l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP 62 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK--LVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFP 62 (186)
T ss_dssp CSHHHHHHHHCGGG--EEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCS
T ss_pred HHHHHHHHHhCCce--eeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCC
Confidence 46788888872111 2223457888888887543 67889999999999999998765543
No 65
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=36.04 E-value=21 Score=28.60 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 030996 116 EQRVKEYCERY 126 (167)
Q Consensus 116 ~~~~r~~~~~~ 126 (167)
...++....+.
T Consensus 322 ~~~l~~~l~~~ 332 (386)
T 2ca6_A 322 VDEIREVFSTR 332 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhc
Confidence 34444444443
No 66
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=29.35 E-value=1.2e+02 Score=22.73 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=31.7
Q ss_pred CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcceeccccc
Q 030996 27 DGISELKVEFHGPKDSLYEGGIWKIRVELPDAYPYKSPSIGFVNKIF 73 (167)
Q Consensus 27 ~n~~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (167)
...+.|.|.+.|+.+.-...-+=++.+.+.+.||. |...+..+.|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 46789999999987654444466788889999975 5555544433
No 67
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=26.70 E-value=46 Score=25.57 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=21.9
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCcceecc
Q 030996 45 EGGIWKIRVELPDAYPY-----KSPSIGFVN 70 (167)
Q Consensus 45 egg~f~~~i~fp~~YP~-----~pP~v~f~t 70 (167)
+.|.|.|+-.+|--||. .||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 45899999999999998 788887763
No 68
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=22.99 E-value=1.6e+02 Score=21.15 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=30.8
Q ss_pred ceEEE--EEEeCCCCCCCC-CCEEEEEEEcCCCCCCCCCcceeccccc
Q 030996 29 ISELK--VEFHGPKDSLYE-GGIWKIRVELPDAYPYKSPSIGFVNKIF 73 (167)
Q Consensus 29 ~~~w~--~~i~Gp~~tpye-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (167)
+..|. +.+.|+.+.... .-+=++...+.+.|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 47998 899999888654 3455788888888874 6666555433
No 69
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Probab=20.35 E-value=32 Score=24.34 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=22.1
Q ss_pred ccccccccCCCCeEEccCCC--CCCCCCCChhhHHHHHH
Q 030996 71 KIFHPNVDELSGSVCLDVIN--QTWSPMFDPLNGDAASL 107 (167)
Q Consensus 71 ~i~HPnV~~~~G~iCl~~l~--~~W~p~~~p~n~eaa~~ 107 (167)
|-.|||....+|.||---+- + +|+..+++.+
T Consensus 67 P~lnP~~~lItGvICGvRVEeIe------dplmqeiRyL 99 (123)
T 3c9p_A 67 PYYVPERIAITGKICGVRIEEID------DPLMQEIRRL 99 (123)
T ss_dssp SCCCGGGGGCCSEETTEEGGGCC------SHHHHHHHHH
T ss_pred cccCccHHHhcccccceehhhcc------cHHHHHHHHH
Confidence 67899999999999962110 1 6777777654
Done!