BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030997
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMF|A Chain A, Solution Structure Of Psb27 From Cyanobacterial
Photosystem Ii
Length = 115
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 56 PNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG 115
P SG L Y + ++ TLRE++ + P+D N + D+A+ I DY+S +R
Sbjct: 2 PLGSCDSGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRR 60
Query: 116 QKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165
+ G +S+ ++ A+ SLA +Y+ G + P+P ++K + + AE+
Sbjct: 61 KGDAGGLKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 109
>pdb|2KND|A Chain A, Psb27 Structure From Synechocystis
Length = 110
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 62 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 121
SG L Y + ++ TLRE++ + P+D N + D+A+ I DY+S +R + G
Sbjct: 3 SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 61
Query: 122 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165
+S+ ++ A+ SLA +Y+ G + P+P ++K + + AE+
Sbjct: 62 LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 104
>pdb|2Y6X|A Chain A, Structure Of Psb27 From Thermosynechococcus Elongatus
Length = 113
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 77 LVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLA 136
L+ +LRE++ P++ N + A++ + D+ + +R ++ S++ ++ A+ SLA
Sbjct: 19 LISSLREAIAL-PENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLA 77
Query: 137 SFYSKAGPSAPLPGEVKSEI 156
YS + P+ PLP ++K+ +
Sbjct: 78 GHYS-SYPNRPLPEKLKARL 96
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
Length = 357
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 115 GQKTVAGEESYVELEKAIRSLASFYS 140
G + + G ES+ + +A+R L +FYS
Sbjct: 184 GAQDLKGHESFGYIFRAVRGLGAFYS 209
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 2 SLSSITGSRQSSTLPLSRLSWQTLTPLPVQAEDMSNGQDEK----------------EEG 45
SL S+ + TLP+ + L Q+ D+SNG +G
Sbjct: 169 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDG 228
Query: 46 VVGAIKSLFDPNEKTKSGKV-LPKAYLKSARELVKTLR--ESLKEDPKDIANFRRNADSA 102
++ ++ FD N+K + L K +L + + L+ E++ D DI + + S
Sbjct: 229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSL 288
Query: 103 KESIRDYLS 111
+++ +L+
Sbjct: 289 LDALEQHLA 297
>pdb|2RAD|A Chain A, Crystal Structure Of The Succinoglycan Biosynthesis
Protein. Northeast Structural Genomics Consortium Target
Bcr135
pdb|2RAD|B Chain B, Crystal Structure Of The Succinoglycan Biosynthesis
Protein. Northeast Structural Genomics Consortium Target
Bcr135
pdb|3B55|A Chain A, Crystal Structure Of The Q81bn2_baccr Protein From
Bacillus Cereus. Nesg Target Bcr135
Length = 451
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 39 QDEKEEGVVGA--IKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFR 96
++EKE+ V+ A I +L + N+ +GK A++K +++ L P A+F
Sbjct: 221 KEEKEKYVLDAKTISALLEENKSYLNGKSKEFAWIKQNARIIEQFTTXLATPPDKPADFY 280
Query: 97 RNADSAKESIRDYLSNWRGQKTVAGEE---------SYVELEKAIRSLASFYSK 141
D A + G+ V G S++ + A + LA +Y K
Sbjct: 281 LKHDIAXYENAKWTEEHLGKTIVWGHNGHVSKTNXLSFIYPKVAGQHLAEYYGK 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.125 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,698,985
Number of Sequences: 62578
Number of extensions: 179790
Number of successful extensions: 556
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 22
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (23.1 bits)