BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030997
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74367|PS11_SYNY3 Photosystem II 11 kDa protein OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=slr1645 PE=1 SV=2
Length = 134
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 62 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 121
SG L Y + ++ TLRE++ + P+D N + D+A+ I DY+S +R + G
Sbjct: 27 SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 85
Query: 122 EESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165
+S+ ++ A+ SLA +Y+ G + P+P ++K + + AE+
Sbjct: 86 LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAER 128
>sp|Q9LR64|Y1360_ARATH Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis
thaliana GN=At1g03600 PE=1 SV=1
Length = 174
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 70 YLKSARELVKTLRESL---KEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYV 126
Y+K ++ +R +L K DP N +E+ +++ +R +K + G+ S+
Sbjct: 74 YIKDTSAVISKVRSTLSMQKTDP----NVADAVAELREASNSWVAKYRKEKALLGKASFR 129
Query: 127 ELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEKFL 167
++ A+ +++ Y GP+AP+P + K+ IL +++TAEK L
Sbjct: 130 DIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170
>sp|Q65DX0|ATPF_BACLD ATP synthase subunit b OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=atpF PE=3 SV=1
Length = 172
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 37 NGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLK---EDPKD-- 91
N E+E+ + G I S NE+ K +A LK ARE ++L E+ K E KD
Sbjct: 43 NIMKEREDYITGEISSAEKKNEEAKKLIEEQQALLKEAREESQSLIENAKKLGEQQKDEI 102
Query: 92 IANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRS 134
I R+ A+ KES R + R Q A E L I S
Sbjct: 103 IKAARQEAERMKESARSEIVKERDQAVTALREQVASLSVMIAS 145
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana
GN=UBP4 PE=1 SV=2
Length = 365
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 33 EDMSNGQDEKEEGVVGAIKSLFD--PNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPK 90
E +N + + EE ++ + LF ++K K+G + PK +++ ++ + R + +D
Sbjct: 53 EHYANNKADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAH 112
Query: 91 DIANFRRN 98
+ N+ N
Sbjct: 113 EFLNYLLN 120
>sp|P58319|LTAE_ECO57 Low specificity L-threonine aldolase OS=Escherichia coli O157:H7
GN=ltaE PE=3 SV=1
Length = 333
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 58 EKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIAN 94
E T +GKVLP+ YLK A E + +L D I N
Sbjct: 136 ENTHNGKVLPREYLKDAWEFTRERNLALHVDGARIFN 172
>sp|P75823|LTAE_ECOLI Low specificity L-threonine aldolase OS=Escherichia coli (strain
K12) GN=ltaE PE=1 SV=1
Length = 333
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 58 EKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIAN 94
E T +GKVLP+ YLK A E + +L D I N
Sbjct: 136 ENTHNGKVLPREYLKEAWEFTRERNLALHVDGARIFN 172
>sp|Q8U0H4|RTCB_PYRFU tRNA-splicing ligase RtcB OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rtcB PE=3 SV=1
Length = 970
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 40 DEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNA 99
+E +G I +DP +K K ++ AYLK +E VK R E K I N
Sbjct: 442 EENIRNFLGKINYEYDPKKKAKG--LIAYAYLK-FKESVKKERRKAMEISKKIYEETGNI 498
Query: 100 DSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAG 143
D A ++++D ++ ++T+ E + K + F + G
Sbjct: 499 DRAYKAVKDIVNRRFVERTIYEGERNPRVPKNFLTFEEFAKERG 542
>sp|Q9VI75|PICA_DROME Phosphatidylinositol-binding clathrin assembly protein LAP
OS=Drosophila melanogaster GN=lap PE=1 SV=3
Length = 468
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 19/138 (13%)
Query: 2 SLSSITGSRQSSTLPLSRLSWQTLTPLPVQAEDMSNGQDEK----------------EEG 45
SL S+ + TLP+ + L Q+ D+SNG +G
Sbjct: 169 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDG 228
Query: 46 VVGAIKSLFDPNEKTKSGKV-LPKAYLKSARELVKTLR--ESLKEDPKDIANFRRNADSA 102
++ ++ FD N+K + L K +L + + L+ E++ D DI + + S
Sbjct: 229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKAPSSL 288
Query: 103 KESIRDYLSNWRGQKTVA 120
+++ +L+ G+K A
Sbjct: 289 LDALEQHLATLEGRKVSA 306
>sp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2
Length = 1035
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 1 MSLSSITGSRQSSTLPLSRLSWQTLTPLPVQAEDMSNGQDEKEEGVVGAIKSLFDPNEKT 60
+ + ++TG+R S P TLT + + ++ GQ +G ++SL
Sbjct: 137 LEILAVTGNRLSGPFPPQLGQITTLTDV-IMESNLFTGQLPPN---LGNLRSL------- 185
Query: 61 KSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNW 113
K L S+ + + ESL + K++ NFR + +S I D++ NW
Sbjct: 186 -------KRLLISSNNITGRIPESL-SNLKNLTNFRIDGNSLSGKIPDFIGNW 230
>sp|Q8MI28|LBN_BOVIN Limbin OS=Bos taurus GN=EVC2 PE=2 SV=1
Length = 1209
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 33 EDMSNGQDEKEEGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDI 92
ED E+ + V +IK D + K + K+ K +K RE+++ +E +E I
Sbjct: 535 EDQMQVLLERAQTEVFSIKQKLDNDLKQEKKKLHQKLIIKRRREMLQKHKEQRREQL-SI 593
Query: 93 ANFRRNADSAKESIRDYLSNWRG---QKTVAGEESYVELEKA 131
A A A E YL WRG + + A EE L++A
Sbjct: 594 AE----ASGAAEDAGQYLGQWRGLMAEHSAALEELQERLDQA 631
>sp|Q310T4|PYRG_DESDG CTP synthase OS=Desulfovibrio desulfuricans (strain G20) GN=pyrG
PE=3 SV=1
Length = 548
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 97 RNADSAK-ESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVK-- 153
+N D +K + + D +N +G+ T+ YV+L++A +SL G + L E+K
Sbjct: 270 KNPDLSKWQELVDTCANPQGKVTIGIVGKYVDLKEAYKSLHEALIHGGVANKLAVELKYV 329
Query: 154 -SEILNDLDTAEKF 166
SE++ D + AE
Sbjct: 330 NSELITDENVAESL 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,075,567
Number of Sequences: 539616
Number of extensions: 2318615
Number of successful extensions: 6790
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 6775
Number of HSP's gapped (non-prelim): 66
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)