Query 030997
Match_columns 167
No_of_seqs 92 out of 94
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmf_A Photosystem II 11 kDa p 100.0 1.3E-44 4.5E-49 277.5 10.0 104 62-167 8-111 (115)
2 2y6x_A PSB27, photosystem II 1 100.0 2.6E-44 8.8E-49 275.3 9.8 103 63-167 5-107 (113)
3 2dt7_A Splicing factor 3A subu 62.0 12 0.0004 23.1 4.0 30 119-149 6-36 (38)
4 4fnv_A Heparinase III protein, 56.1 30 0.001 32.3 7.4 66 97-162 178-245 (702)
5 1tex_A STF0 sulfotransferase; 50.7 7.9 0.00027 31.8 2.3 54 69-123 233-286 (287)
6 3vup_A Beta-1,4-mannanase; TIM 48.6 40 0.0014 25.4 5.8 50 99-148 134-220 (351)
7 2gmf_A Granulocyte-macrophage 43.0 9.8 0.00034 29.3 1.6 25 123-147 68-92 (127)
8 4ebb_A Dipeptidyl peptidase 2; 40.8 18 0.00062 31.7 3.2 30 88-117 425-454 (472)
9 4awe_A Endo-beta-D-1,4-mannana 37.4 57 0.0019 24.7 5.1 52 97-148 151-224 (387)
10 1lbq_A Ferrochelatase; rossman 33.1 36 0.0012 29.4 3.8 56 105-162 23-90 (362)
11 3fxd_A Protein ICMQ; helix bun 31.9 84 0.0029 21.2 4.6 41 72-112 8-49 (57)
12 3rkv_A Putative peptidylprolyl 31.5 56 0.0019 22.2 3.9 35 75-109 114-148 (162)
13 3ceg_A Baculoviral IAP repeat- 30.5 1.2E+02 0.004 26.2 6.6 99 44-142 192-314 (323)
14 2w2u_A Hypothetical P60 katani 29.1 1.4E+02 0.0048 20.5 5.7 44 121-165 35-78 (83)
15 3g2f_A Bone morphogenetic prot 28.1 57 0.0019 25.3 3.8 42 76-121 287-328 (336)
16 1ny9_A Transcriptional activat 27.2 88 0.003 22.7 4.6 38 70-112 53-92 (143)
17 2ca5_A MXIH; transport protein 27.1 95 0.0032 22.4 4.5 39 71-113 23-61 (85)
18 3n2z_B Lysosomal Pro-X carboxy 27.0 47 0.0016 29.2 3.5 28 88-115 418-445 (446)
19 3rh2_A Hypothetical TETR-like 26.8 1.7E+02 0.0058 20.7 9.3 67 94-160 113-184 (212)
20 2r25_A Phosphorelay intermedia 26.8 80 0.0027 24.9 4.5 54 45-103 12-67 (167)
21 3faj_A ORF131, putative unchar 25.4 1E+02 0.0034 24.2 4.7 50 94-166 70-121 (151)
22 2kp7_A Crossover junction endo 25.3 23 0.00079 24.9 1.0 58 105-162 17-80 (87)
23 1i5n_A Chemotaxis protein CHEA 24.5 2.1E+02 0.0072 21.0 12.0 98 65-162 7-125 (146)
24 3hcn_A Ferrochelatase, mitocho 24.5 92 0.0031 26.9 4.8 58 105-162 20-85 (359)
25 1yvi_A Histidine-containing ph 23.9 1.4E+02 0.0047 21.9 5.2 56 48-103 28-83 (149)
26 1qnr_A Endo-1,4-B-D-mannanase; 23.7 89 0.003 24.7 4.3 24 97-120 139-162 (344)
27 3abh_A Pacsin2, protein kinase 23.2 2.9E+02 0.0098 22.0 7.6 74 63-143 30-108 (312)
28 3us6_A Histidine-containing ph 22.8 1.5E+02 0.005 22.2 5.2 56 47-103 27-82 (153)
29 4hfk_B Putative uncharacterize 22.8 2.4E+02 0.0081 20.9 6.2 53 67-129 30-82 (105)
30 3aco_A Pacsin2, protein kinase 22.8 3.1E+02 0.011 22.3 7.6 85 47-143 19-108 (350)
31 1wxp_A THO complex subunit 1; 21.9 84 0.0029 22.2 3.5 72 60-137 10-89 (110)
32 1wh6_A CUT-like 2, homeobox pr 20.8 90 0.0031 22.8 3.5 62 73-134 18-82 (101)
33 3lf9_A 4E10_D0_1IS1A_001_C (T1 20.5 1.8E+02 0.0062 22.1 5.2 38 128-165 13-51 (121)
34 1xi4_J LCA, clathrin light cha 20.3 1.3E+02 0.0045 20.6 4.1 20 94-113 32-51 (70)
35 2p32_A Heat shock 70 kDa prote 20.0 1.9E+02 0.0063 20.5 5.0 67 44-113 24-91 (120)
No 1
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=100.00 E-value=1.3e-44 Score=277.51 Aligned_cols=104 Identities=28% Similarity=0.513 Sum_probs=99.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhh
Q 030997 62 SGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSK 141 (167)
Q Consensus 62 sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYss 141 (167)
+.+.||++|++||++||++||++|+|+.+|+ ++++++++||++|||||++|||++.|+|++||++||||||+|||||++
T Consensus 8 ~~~~L~~~Y~~dT~~Vv~~lr~~l~l~~d~~-~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s 86 (115)
T 2kmf_A 8 SGTGLTGNYSQDTLTVIATLREAIDLPQDAP-NRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTS 86 (115)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCccHHHHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhh
Confidence 3677999999999999999999999976666 579999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcC
Q 030997 142 AGPSAPLPGEVKSEILNDLDTAEKFL 167 (167)
Q Consensus 142 yGp~~PLPek~K~Rll~EL~~AE~aL 167 (167)
|| +||||+|+|+||++||++||++|
T Consensus 87 ~g-~~PlPek~k~Rl~~el~~AE~al 111 (115)
T 2kmf_A 87 YG-ARPIPEKLKKRLQLEFTQAERSI 111 (115)
T ss_dssp HS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 98 99999999999999999999986
No 2
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=100.00 E-value=2.6e-44 Score=275.31 Aligned_cols=103 Identities=22% Similarity=0.406 Sum_probs=98.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhhc
Q 030997 63 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKA 142 (167)
Q Consensus 63 g~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYssy 142 (167)
.+.||++|++||++||++||++|+|+.+|| ++++++++||++|||||++|||++.|+|++||+|||||||+|||||++|
T Consensus 5 ~~~L~~~Y~~dT~~Vv~~lr~~l~l~~d~~-~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~ 83 (113)
T 2y6x_A 5 PTGLTGNFREDTLALISSLREAIALPENDP-NKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY 83 (113)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCccHHHHHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhc
Confidence 356999999999999999999999986666 5699999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcC
Q 030997 143 GPSAPLPGEVKSEILNDLDTAEKFL 167 (167)
Q Consensus 143 Gp~~PLPek~K~Rll~EL~~AE~aL 167 (167)
| +||||+|+|+||++||++||++|
T Consensus 84 g-~~PlPek~k~Rl~~el~~AE~al 107 (113)
T 2y6x_A 84 P-NRPLPEKLKARLEQEFKQVELAL 107 (113)
T ss_dssp T-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999999986
No 3
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.98 E-value=12 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.559 Sum_probs=25.0
Q ss_pred ccCcchHHHHHHHHHHHHhhHhhcCCCCC-CC
Q 030997 119 VAGEESYVELEKAIRSLASFYSKAGPSAP-LP 149 (167)
Q Consensus 119 V~G~~SFttm~tALNsLAGhYssyGp~~P-LP 149 (167)
++|-.-|...|..|+.+=.||..| |+.+ +|
T Consensus 6 lsg~~~f~~FY~rlk~Ike~Hrr~-P~~~~~~ 36 (38)
T 2dt7_A 6 ISGPNEFAEFYNRLKQIKEFHRKH-PNEICVP 36 (38)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHSC-CSSCCCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhC-CCccccC
Confidence 345556999999999999999999 8887 55
No 4
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=56.05 E-value=30 Score=32.33 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHH--HhhHhhcCCCCCCChHHHHHHHHHHHH
Q 030997 97 RNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSL--ASFYSKAGPSAPLPGEVKSEILNDLDT 162 (167)
Q Consensus 97 ~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsL--AGhYssyGp~~PLPek~K~Rll~EL~~ 162 (167)
+.++.+++.|.+|+..+-....+++.-..+.|.+|++.+ ..||.-+....-++++.+.+++..|.+
T Consensus 178 kYa~~a~~ll~dWi~~np~~~g~~~~~~W~~l~~a~Rli~wi~~~~~l~~s~~~t~e~~~~~l~sL~~ 245 (702)
T 4fnv_A 178 KYIQSWIEVYKNWIENNPKPTTGPNTTSWWQLQVSTRIGDQVQLLEYFKNSVNFTPEWLSTFLVEFAE 245 (702)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSSCCSSTTCHHHHHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcCCCCCccceeHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 467889999999999986544455556677888888654 456665643334889999999888753
No 5
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium smegmatis} SCOP: c.37.1.5
Probab=50.65 E-value=7.9 Score=31.79 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcc
Q 030997 69 AYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEE 123 (167)
Q Consensus 69 dY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~ 123 (167)
+-++|...+++.|-+-|.++...... ......+-....+|+.|||.+-..+|++
T Consensus 233 DLv~dP~~~l~~l~~FLGl~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 286 (287)
T 1tex_A 233 YLWRNLTEVVGTVLEALGQDPRLAPK-PVLERQADQRSDEWVERYRRDAQRDGLP 286 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTCC---------------CCSTTTC-C-CCSCCC
T ss_pred HHHhCHHHHHHHHHHHhCCCccccCC-chhhcccCCchHHHHHHHHHHHHhcCCC
Confidence 44556667788888888886543322 1233344444588999999998888876
No 6
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=48.57 E-value=40 Score=25.40 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhccCCCCccC-------------------------------------cchHHHHHHHHHHHHhhHhh
Q 030997 99 ADSAKESIRDYLSNWRGQKTVAG-------------------------------------EESYVELEKAIRSLASFYSK 141 (167)
Q Consensus 99 a~~Ake~IndyvsrYRr~~~V~G-------------------------------------~~SFttm~tALNsLAGhYss 141 (167)
++..++.++..+.|||..+.|-+ ......+...++.++.+-.+
T Consensus 134 ~~~~~~~~~~~v~r~kn~psi~~w~l~NEp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 213 (351)
T 3vup_A 134 QSYIDKALKPIVNHVKGHVALGGWDLMNEPEGMMIPDKHNAEKCYDTTALKNSGAGWAGNKYLYQDILRFLNWQADAIKT 213 (351)
T ss_dssp HHHHHHTHHHHHHHTTTCTTBCCEEEEECGGGGBCCSCCCSSGGGCCGGGTTSSTTTTCSCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecccccccccccccccccccccchhhcccccccccccchhhHHHHHHHHHHHhhc
Confidence 34455667888999999998763 23567788888999999999
Q ss_pred cCCCCCC
Q 030997 142 AGPSAPL 148 (167)
Q Consensus 142 yGp~~PL 148 (167)
..|++++
T Consensus 214 ~dp~~lv 220 (351)
T 3vup_A 214 TDPGALV 220 (351)
T ss_dssp HSTTCCE
T ss_pred cCCCCee
Confidence 9999886
No 7
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=42.96 E-value=9.8 Score=29.35 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHhhHhhcCCCCC
Q 030997 123 ESYVELEKAIRSLASFYSKAGPSAP 147 (167)
Q Consensus 123 ~SFttm~tALNsLAGhYssyGp~~P 147 (167)
-|++-+..+|+-+|.||..+-|-.|
T Consensus 68 Gslt~Lkg~LtmmA~hYkq~CppTp 92 (127)
T 2gmf_A 68 GSLTKLKGPLTMMASHYKQHCPPTP 92 (127)
T ss_dssp GGGGGGHHHHHHHHHHHHHHSCCCC
T ss_pred chHHHhccHHHHHHHHHHhcCCCCC
Confidence 3899999999999999999976555
No 8
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=40.76 E-value=18 Score=31.68 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCcchHHHHHhHHHHHHHHHHHHHhccCCC
Q 030997 88 DPKDIANFRRNADSAKESIRDYLSNWRGQK 117 (167)
Q Consensus 88 d~~D~~k~~~aa~~Ake~IndyvsrYRr~~ 117 (167)
.+.||+.+.++++...+.|+.||..||.++
T Consensus 425 ~~~Dp~~l~~ar~~~~~~i~~Wl~~~~~~~ 454 (472)
T 4ebb_A 425 HPEDPASVVEARKLEATIIGEWVKAARREQ 454 (472)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888888899999999999999997654
No 9
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}
Probab=37.41 E-value=57 Score=24.65 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHHHhccCCCCccC----------------------cchHHHHHHHHHHHHhhHhhcCCCCCC
Q 030997 97 RNADSAKESIRDYLSNWRGQKTVAG----------------------EESYVELEKAIRSLASFYSKAGPSAPL 148 (167)
Q Consensus 97 ~aa~~Ake~IndyvsrYRr~~~V~G----------------------~~SFttm~tALNsLAGhYssyGp~~PL 148 (167)
..++..++-++..+.+||..|.|-+ ...-..++..++.++.+..+.-|++|+
T Consensus 151 ~~~~~~~~~~~~~~~r~k~~p~I~~w~l~NEp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~Dp~~lv 224 (387)
T 4awe_A 151 KIKEAFKRYVKAMVTRYRDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLV 224 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEESCBSCCSCCCTTTSCCCCSSSCCHHHHHHHHHHHHHHHHHHCSSSEE
T ss_pred HHHHHHHHHHHHHHhhcCCCcceeEeccCCCCCCCCCccccccccccccchHHHHHHHHHHHHHHHHhCCCCcE
Confidence 4567778888899999999888742 223466777888888888888888775
No 10
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=33.14 E-value=36 Score=29.37 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=41.7
Q ss_pred HHHHHHHhccCCCCccCcchHHHHHHHHHH---------HHhhHhhcCCCCCCCh---HHHHHHHHHHHH
Q 030997 105 SIRDYLSNWRGQKTVAGEESYVELEKAIRS---------LASFYSKAGPSAPLPG---EVKSEILNDLDT 162 (167)
Q Consensus 105 ~IndyvsrYRr~~~V~G~~SFttm~tALNs---------LAGhYssyGp~~PLPe---k~K~Rll~EL~~ 162 (167)
.|+.|+.++..++.|-..+.+ ++.-|+- ++.+|.+.|--.||.. +..+.|.+.|++
T Consensus 23 ~V~~fL~~~~~d~~vi~~p~~--~~~~l~~~I~~~R~~k~~~~Y~~ig~gSPL~~~t~~q~~~L~~~L~~ 90 (362)
T 1lbq_A 23 ETYDFLYQLFADNDLIPISAK--YQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEVCKILDK 90 (362)
T ss_dssp GHHHHHHHHTTCCSSSCCCSS--SHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccccCCHH--HHHHHhhhcCccchHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHh
Confidence 688899999999988888766 5655555 8999999998888865 334455555543
No 11
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=31.88 E-value=84 Score=21.22 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHH-HHHh
Q 030997 72 KSARELVKTLRESLKEDPKDIANFRRNADSAKESIRD-YLSN 112 (167)
Q Consensus 72 kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~Ind-yvsr 112 (167)
+.+.++.+.|-++|+.-|=|..+|=++.-.=-..||| |+..
T Consensus 8 eq~~aILkaLdeaIe~GPWe~SNFLRvIGKnL~eIRd~F~~~ 49 (57)
T 3fxd_A 8 EQKETILKALNDAIEKGPWDKSNFLRVIGKKLIAIRDRFLKR 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHhHHHHHHHHHHH
Confidence 4578999999999999997777777766666667777 5543
No 12
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=31.51 E-value=56 Score=22.24 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHH
Q 030997 75 RELVKTLRESLKEDPKDIANFRRNADSAKESIRDY 109 (167)
Q Consensus 75 ~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~Indy 109 (167)
.+.+..++.+|.++|+++.........+++.++++
T Consensus 114 ~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 114 DEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45567777888887777644344445555555443
No 13
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=30.51 E-value=1.2e+02 Score=26.18 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=47.4
Q ss_pred cchhhhhhhcc---CCCCCCcCCCCC---------cHHHHHHHHHHHHH--HHHHhcCCCcc---h--HHHHHhHHHHHH
Q 030997 44 EGVVGAIKSLF---DPNEKTKSGKVL---------PKAYLKSARELVKT--LRESLKEDPKD---I--ANFRRNADSAKE 104 (167)
Q Consensus 44 ~~~~~~~~~~f---dp~~~t~sg~~L---------~gdY~kdT~~VV~t--LReaL~ld~~D---~--~k~~~aa~~Ake 104 (167)
+.|+-.|.++| |||.+-+..-.. ...|.+.++..+.. +.+.|.-+|.- . .-|..-.....+
T Consensus 192 ~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~~~~i~~ 271 (323)
T 3ceg_A 192 LQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMA 271 (323)
T ss_dssp HHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhHHHHhCCCcccHHHHHHHHHHhHHHHHH
Confidence 46888899998 887776654322 23344444433321 22334443321 1 125555566666
Q ss_pred HHHHHHHh---ccCCCCccCcchH--HHHHHHHHHHHhhHhhc
Q 030997 105 SIRDYLSN---WRGQKTVAGEESY--VELEKAIRSLASFYSKA 142 (167)
Q Consensus 105 ~Indyvsr---YRr~~~V~G~~SF--ttm~tALNsLAGhYssy 142 (167)
.++.|+.. |..++.+....++ ..+..+++.|-.-..+-
T Consensus 272 ~~~~w~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~ 314 (323)
T 3ceg_A 272 QCEEWIADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKL 314 (323)
T ss_dssp HHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhccccccchhhhhHHHHHHHHHHHHHHHHHhc
Confidence 77777764 3333333322233 34455555555444443
No 14
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.08 E-value=1.4e+02 Score=20.47 Aligned_cols=44 Identities=23% Similarity=0.137 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHHHHhhHhhcCCCCCCChHHHHHHHHHHHHHHh
Q 030997 121 GEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDTAEK 165 (167)
Q Consensus 121 G~~SFttm~tALNsLAGhYssyGp~~PLPek~K~Rll~EL~~AE~ 165 (167)
-...|.-...||..|--.-... |+-..-+.+|.++.+-++.||.
T Consensus 35 y~eAl~lY~~aie~l~~alk~e-~d~~~k~~ir~K~~eY~~RAE~ 78 (83)
T 2w2u_A 35 AEEAITNYKKAIEVLAQLVSLY-RDGSTAAIYEQMINEYKRRIEV 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-TTSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677888776654444 8888888899999999999986
No 15
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=28.15 E-value=57 Score=25.26 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccC
Q 030997 76 ELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAG 121 (167)
Q Consensus 76 ~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G 121 (167)
++.+-|+..|.. ||++ |-.++++.+.+.+.+..|.++..+.-
T Consensus 287 ~l~~li~~cl~~---dP~~-Rps~~e~l~~L~~ll~~~~~~~~~~~ 328 (336)
T 3g2f_A 287 SLKETIEDCWDQ---DAEA-RLTAQXAEERMAELMMIWERNKSVSP 328 (336)
T ss_dssp HHHHHHHHHSCS---SGGG-SCCHHHHHHHHHHHHHCCCC------
T ss_pred HHHHHHHHHhcC---Chhh-CcchHHHHHHHHHHHHHHHhcccCCC
Confidence 455666677765 6655 66788899999999999988876543
No 16
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=27.19 E-value=88 Score=22.68 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhcCC--CcchHHHHHhHHHHHHHHHHHHHh
Q 030997 70 YLKSARELVKTLRESLKED--PKDIANFRRNADSAKESIRDYLSN 112 (167)
Q Consensus 70 Y~kdT~~VV~tLReaL~ld--~~D~~k~~~aa~~Ake~Indyvsr 112 (167)
+.+...++...|..++... |++++ +++.++. -++|+.+
T Consensus 53 ~~~~~~~l~~~l~~~~~~g~~p~s~e----aq~l~~~-h~~~l~~ 92 (143)
T 1ny9_A 53 IQDEADELTRRFVALMDAGEPADSEG----AMDAAED-HRQGIAR 92 (143)
T ss_dssp TTHHHHHHHHHHHHHHHHTCCTTCHH----HHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHH----HHHHHHH-HHHHHHH
Confidence 4466788899999888764 55542 3444443 5577765
No 17
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=27.11 E-value=95 Score=22.42 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhc
Q 030997 71 LKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNW 113 (167)
Q Consensus 71 ~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrY 113 (167)
+++..+-|+.-.+.|+.+|+||... ++-...|++|--.|
T Consensus 23 a~~~~~~v~~Ai~~L~~~PsnPa~L----AeyQ~kl~eysl~r 61 (85)
T 2ca5_A 23 TQTLQGELTLALDKLAKNPSNPQLL----AEYQSKLSEYTLYR 61 (85)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHH----HHHHHHHHHHHHHH
Confidence 5566667777777888899999765 44455777775433
No 18
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}
Probab=27.02 E-value=47 Score=29.16 Aligned_cols=28 Identities=4% Similarity=0.152 Sum_probs=22.2
Q ss_pred CCcchHHHHHhHHHHHHHHHHHHHhccC
Q 030997 88 DPKDIANFRRNADSAKESIRDYLSNWRG 115 (167)
Q Consensus 88 d~~D~~k~~~aa~~Ake~IndyvsrYRr 115 (167)
.+.||+.+.++++...+.|+.||+.|+.
T Consensus 418 ~~~Dp~~l~~ar~~~~~~i~~Wl~~~~~ 445 (446)
T 3n2z_B 418 NALDPMSVLLARSLEVRHMKNWIRDFYD 445 (446)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3578888888888888888888888864
No 19
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=26.78 E-value=1.7e+02 Score=20.70 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=38.5
Q ss_pred HHHHhHHHHHHHHHHHHHhccCCCCccCcc-hHHHHHHHHHHHHhhHhh----cCCCCCCChHHHHHHHHHH
Q 030997 94 NFRRNADSAKESIRDYLSNWRGQKTVAGEE-SYVELEKAIRSLASFYSK----AGPSAPLPGEVKSEILNDL 160 (167)
Q Consensus 94 k~~~aa~~Ake~IndyvsrYRr~~~V~G~~-SFttm~tALNsLAGhYss----yGp~~PLPek~K~Rll~EL 160 (167)
.+.+..+...+.+.+++.+....+.+.... ....+-..+-.+..+|.. ..+..+++++.-.++...+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (212)
T 3rh2_A 113 RYLKVQQAVLEQSIAVLNQLKKDGILQIEDERIADLADTIKMIIGFWISYKLTQSSIATISKASLYEGLLRV 184 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSBCCCGGGHHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHH
Confidence 344445666667777777776666555432 244455555555555544 3457777777666655544
No 20
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=26.77 E-value=80 Score=24.88 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=39.6
Q ss_pred chhhhhhhccCCCCCCcCC--CCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHH
Q 030997 45 GVVGAIKSLFDPNEKTKSG--KVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAK 103 (167)
Q Consensus 45 ~~~~~~~~~fdp~~~t~sg--~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ak 103 (167)
.++..|..+-|++ .+ ..|-..|++|+...+..|+.+|+ .+.|..+.+..+...|
T Consensus 12 ~~f~qL~el~dd~----p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LK 67 (167)
T 2r25_A 12 TILNEIISMDDDD----SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLK 67 (167)
T ss_dssp HHHHHHHHTTTTS----SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC----chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhh
Confidence 4666777776654 12 35678899999999999999998 5678777666555555
No 21
>3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural PROT binding protein; 1.70A {Acidianus two-tailed virus}
Probab=25.38 E-value=1e+02 Score=24.17 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=32.4
Q ss_pred HHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhhcCCCCCCChHHHHHHHH--HHHHHHhc
Q 030997 94 NFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILN--DLDTAEKF 166 (167)
Q Consensus 94 k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYssyGp~~PLPek~K~Rll~--EL~~AE~a 166 (167)
...++..+.-+.|+++++-||+.. +-| ...|||..+-..|.. |+.+|..+
T Consensus 70 ~~keaIHeiIK~IreA~kPyr~~g----------------------~gf-~~~pip~~via~v~s~~~~~~~~~~ 121 (151)
T 3faj_A 70 RTKEAIHAIVKMISDAMKPYRNKG----------------------SGF-QSQPIPGEVIAQVTSNPEYQQAKAF 121 (151)
T ss_dssp HHHHHHHHHHHHHHHHHGGGC------------------------------CEECCHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCC----------------------CCc-cCCCCcHHHHHHHhcChHHHHHHHH
Confidence 445678888889999999999844 123 466888888777764 55566554
No 22
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=25.27 E-value=23 Score=24.92 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=34.1
Q ss_pred HHHHHHHhccCCCCccCcchHHHHHHHHHHHHhhHhhcCC------CCCCChHHHHHHHHHHHH
Q 030997 105 SIRDYLSNWRGQKTVAGEESYVELEKAIRSLASFYSKAGP------SAPLPGEVKSEILNDLDT 162 (167)
Q Consensus 105 ~IndyvsrYRr~~~V~G~~SFttm~tALNsLAGhYssyGp------~~PLPek~K~Rll~EL~~ 162 (167)
.+-+|+..|+..-.-.+.-.+.+...|+++|..|=..+-. -.=+=+++-++|.+.|.+
T Consensus 17 lf~~wL~e~~~~a~~r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 17 LFVRWLTEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 5566666666544444666788889999999876433200 000225566666665543
No 23
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=24.54 E-value=2.1e+02 Score=20.95 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHhc---CCCcch---HHHHHhHHHHH---------------HHHHHHHHhccCCCCccCcc
Q 030997 65 VLPKAYLKSARELVKTLRESLK---EDPKDI---ANFRRNADSAK---------------ESIRDYLSNWRGQKTVAGEE 123 (167)
Q Consensus 65 ~L~gdY~kdT~~VV~tLReaL~---ld~~D~---~k~~~aa~~Ak---------------e~IndyvsrYRr~~~V~G~~ 123 (167)
.|-..|++++.+.+..|.+.|. -+|.|. +...+++-..| ..+-+.+...|.........
T Consensus 7 ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~~ 86 (146)
T 1i5n_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTD 86 (146)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 4567899999999999999883 234444 22223332222 23455667777766555555
Q ss_pred hHHHHHHHHHHHHhhHhhcCCCCCCChHHHHHHHHHHHH
Q 030997 124 SYVELEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDT 162 (167)
Q Consensus 124 SFttm~tALNsLAGhYssyGp~~PLPek~K~Rll~EL~~ 162 (167)
-+..+..++..|...-.......+.+...-+.+++.|..
T Consensus 87 l~~~l~~~~D~l~~~l~~~~~~~~~~~~~~~~l~~~L~~ 125 (146)
T 1i5n_A 87 IINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQ 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 666777776666666555533334444444445555543
No 24
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=24.50 E-value=92 Score=26.92 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCCccCcchHHHHH-----HHHHHHHhhHhhcCCCCCCC---hHHHHHHHHHHHH
Q 030997 105 SIRDYLSNWRGQKTVAGEESYVELE-----KAIRSLASFYSKAGPSAPLP---GEVKSEILNDLDT 162 (167)
Q Consensus 105 ~IndyvsrYRr~~~V~G~~SFttm~-----tALNsLAGhYssyGp~~PLP---ek~K~Rll~EL~~ 162 (167)
.|+.|+.+..+++.|-..+...-+. .=...++.||.+.|-..||- ++..+.|.+.|++
T Consensus 20 ~V~~fL~~~~~d~~Vi~~P~~~~L~~~I~~~R~~k~~~~Y~~igggSPL~~~t~~Q~~~L~~~L~~ 85 (359)
T 3hcn_A 20 DVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDE 85 (359)
T ss_dssp GHHHHHHHHHTCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccccchHHHHhHHhcccchHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhh
Confidence 6777888887777777776422221 11247899999998778886 3444555555543
No 25
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=23.90 E-value=1.4e+02 Score=21.92 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=34.2
Q ss_pred hhhhhccCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHH
Q 030997 48 GAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAK 103 (167)
Q Consensus 48 ~~~~~~fdp~~~t~sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ak 103 (167)
..|..+.|.+..-.-=..|-..|++|+...+..|+.+++..+.|....++.+...|
T Consensus 28 ~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LK 83 (149)
T 1yvi_A 28 QQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK 83 (149)
T ss_dssp HHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 35666655432000002456779999999999999999864446666555555544
No 26
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Probab=23.73 E-value=89 Score=24.68 Aligned_cols=24 Identities=4% Similarity=0.169 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHhccCCCCcc
Q 030997 97 RNADSAKESIRDYLSNWRGQKTVA 120 (167)
Q Consensus 97 ~aa~~Ake~IndyvsrYRr~~~V~ 120 (167)
+..+..++.++..+.+|+..+.|-
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~p~v~ 162 (344)
T 1qnr_A 139 AAQTQYRKYVQAVVSRYANSTAIF 162 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEE
Confidence 346777889999999999988874
No 27
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=23.17 E-value=2.9e+02 Score=22.02 Aligned_cols=74 Identities=11% Similarity=0.197 Sum_probs=43.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccC----CCCc-cCcchHHHHHHHHHHHHh
Q 030997 63 GKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRG----QKTV-AGEESYVELEKAIRSLAS 137 (167)
Q Consensus 63 g~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr----~~~V-~G~~SFttm~tALNsLAG 137 (167)
|-..--..+++-....+.|..-+.. .+.+..+=-+.+..+..+|.. .+.. +=..+|..|.+.+..+|.
T Consensus 30 g~~~l~~r~~~g~~~~~el~~f~ke-------Ra~iE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~ 102 (312)
T 3abh_A 30 NYKRTVKRIDDGHRLCSDLMNCLHE-------RARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSE 102 (312)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777666652 123333333345555555542 2222 223577888888888888
Q ss_pred hHhhcC
Q 030997 138 FYSKAG 143 (167)
Q Consensus 138 hYssyG 143 (167)
.-..++
T Consensus 103 ~H~~~a 108 (312)
T 3abh_A 103 LHLEVK 108 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 28
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=22.81 E-value=1.5e+02 Score=22.23 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=36.2
Q ss_pred hhhhhhccCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHH
Q 030997 47 VGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAK 103 (167)
Q Consensus 47 ~~~~~~~fdp~~~t~sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ak 103 (167)
+.-|..+-|++.. .-=..+-..|++|+.+.+..|+.+++..+.|....++.+-..|
T Consensus 27 f~qL~~L~~~~~~-~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 82 (153)
T 3us6_A 27 FLQLQQLQDENNP-EFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFK 82 (153)
T ss_dssp HHHHHHTCBTTBT-THHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 3445666655321 1112456789999999999999999865557766555554444
No 29
>4hfk_B Putative uncharacterized protein; amidase, hydrolase; 2.10A {Enterobacter cloacae}
Probab=22.79 E-value=2.4e+02 Score=20.92 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhccCCCCccCcchHHHHH
Q 030997 67 PKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWRGQKTVAGEESYVELE 129 (167)
Q Consensus 67 ~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~ 129 (167)
.++.-+||..-+..++|-... |.+.+ .+++++|+.|+++==+++ .+ ..|+.|.
T Consensus 30 ~~~~~~DA~sSasA~lE~~~y---d~Ea~----~~~~~Li~kyLa~~y~~~--~~-~~f~llK 82 (105)
T 4hfk_B 30 SKSLKEDADASAAAWLEASNL---PAENF----EKADEVIVSLLKQKVGGT--EP-GHYQILK 82 (105)
T ss_dssp CHHHHHHHHHHHHHHHHHCCS---CHHHH----HHHHHHHHHHHTSCCBCS--SS-SCCHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHhC---CHHHh----HHHHHHHHHHHccccCCC--CC-CcchHHH
Confidence 356778999999999998776 55543 668889999988522222 22 4666554
No 30
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=22.77 E-value=3.1e+02 Score=22.35 Aligned_cols=85 Identities=11% Similarity=0.186 Sum_probs=46.1
Q ss_pred hhhhhhccCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHhcCCCcchHHHHHhHHHHHHHHHHHHHhcc----CCCCc-cC
Q 030997 47 VGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDPKDIANFRRNADSAKESIRDYLSNWR----GQKTV-AG 121 (167)
Q Consensus 47 ~~~~~~~fdp~~~t~sg~~L~gdY~kdT~~VV~tLReaL~ld~~D~~k~~~aa~~Ake~IndyvsrYR----r~~~V-~G 121 (167)
.+..-++++| .|-..--..+++-....+.|..-+.. .+++..+=-+.+..+..+|. +.+.. +=
T Consensus 19 ~~f~~~FW~~-----~g~~~L~~r~~~g~~~~~el~~f~ke-------Ra~IE~eYak~L~kLakk~~~~~~~~~e~gtl 86 (350)
T 3aco_A 19 EVSSDSFWEV-----GNYKRTVKRIDDGHRLCSDLMNCLHE-------RARIEKAYAQQLTEWARRWRQLVEKGPQYGTV 86 (350)
T ss_dssp ----CCTTST-----TTTHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTSSCCHHH
T ss_pred ccccccCCCC-----CCcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCCCchH
Confidence 3333444555 36666666777777777777666642 12333333335555556664 22222 22
Q ss_pred cchHHHHHHHHHHHHhhHhhcC
Q 030997 122 EESYVELEKAIRSLASFYSKAG 143 (167)
Q Consensus 122 ~~SFttm~tALNsLAGhYssyG 143 (167)
..+|..|.+.+..+|..-..++
T Consensus 87 ~~aw~~l~~e~e~~a~~H~~la 108 (350)
T 3aco_A 87 EKAWMAFMSEAERVSELHLEVK 108 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888887766663
No 31
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=21.89 E-value=84 Score=22.22 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=39.0
Q ss_pred CcCCCCCcHHHHHHHHHHH----HHHHHHhcCCCcchHHHHH----hHHHHHHHHHHHHHhccCCCCccCcchHHHHHHH
Q 030997 60 TKSGKVLPKAYLKSARELV----KTLRESLKEDPKDIANFRR----NADSAKESIRDYLSNWRGQKTVAGEESYVELEKA 131 (167)
Q Consensus 60 t~sg~~L~gdY~kdT~~VV----~tLReaL~ld~~D~~k~~~----aa~~Ake~IndyvsrYRr~~~V~G~~SFttm~tA 131 (167)
+-....|+..|+..-.+-| +.|-..|.+...|-..++. ..+.+.+.++.|..+.. ..++...+..|
T Consensus 10 ~~~~~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~~~~~I~~ie~~~~~~~eq~~~mL~~W~~r~G------~~AT~~~L~~A 83 (110)
T 1wxp_A 10 VRRDKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIRQIECDSEDMKMRAKQLLVAWQDQEG------VHATPENLINA 83 (110)
T ss_dssp CCSSSCCCHHHHHHHHHHHTTTHHHHTTTTTCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHG------GGCCHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHhhC------cCcHHHHHHHH
Confidence 3456777788877665555 2333344443333333322 22344555555544432 23688899999
Q ss_pred HHHHHh
Q 030997 132 IRSLAS 137 (167)
Q Consensus 132 LNsLAG 137 (167)
|+.+.-
T Consensus 84 L~~~~~ 89 (110)
T 1wxp_A 84 LNKSGL 89 (110)
T ss_dssp HHHTTC
T ss_pred HHHcCc
Confidence 987543
No 32
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=20.81 E-value=90 Score=22.76 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHH-hHHHHHHHHHHHHHhccCCCCcc--CcchHHHHHHHHHH
Q 030997 73 SARELVKTLRESLKEDPKDIANFRR-NADSAKESIRDYLSNWRGQKTVA--GEESYVELEKAIRS 134 (167)
Q Consensus 73 dT~~VV~tLReaL~ld~~D~~k~~~-aa~~Ake~IndyvsrYRr~~~V~--G~~SFttm~tALNs 134 (167)
||.+|++.+++-|....-.-..|++ +-.-.+-.+.|.+.+=++=.... |+..|.-|+.=|+-
T Consensus 18 DTk~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~nWL~l 82 (101)
T 1wh6_A 18 DTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSD 82 (101)
T ss_dssp CHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHHHhCC
Confidence 7999999999999864322233433 22233556777777777767764 89999999976663
No 33
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=20.47 E-value=1.8e+02 Score=22.13 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhHhhcCCCCCCChHHHHHHHHHHHH-HHh
Q 030997 128 LEKAIRSLASFYSKAGPSAPLPGEVKSEILNDLDT-AEK 165 (167)
Q Consensus 128 m~tALNsLAGhYssyGp~~PLPek~K~Rll~EL~~-AE~ 165 (167)
|-..+.+|-...++--.-+||.+++|..|.+...+ ||.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEe 51 (121)
T 3lf9_A 13 MDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEG 51 (121)
T ss_dssp HHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45555556666666666799999999999888766 443
No 34
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=20.34 E-value=1.3e+02 Score=20.61 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHHHHHHHhc
Q 030997 94 NFRRNADSAKESIRDYLSNW 113 (167)
Q Consensus 94 k~~~aa~~Ake~IndyvsrY 113 (167)
+..+..+.|++.|.||-.+|
T Consensus 32 ~k~e~~~~A~k~iddfY~~y 51 (70)
T 1xi4_J 32 QEAEWKEKAIKELDEWYARQ 51 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555
No 35
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.03 E-value=1.9e+02 Score=20.48 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=47.3
Q ss_pred cchhhhhhhccCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHhHHHHHHHHHHHHHhc
Q 030997 44 EGVVGAIKSLFDPNEKTKSGKVLPKAYLKSARELVKTLRESLKEDP-KDIANFRRNADSAKESIRDYLSNW 113 (167)
Q Consensus 44 ~~~~~~~~~~fdp~~~t~sg~~L~gdY~kdT~~VV~tLReaL~ld~-~D~~k~~~aa~~Ake~IndyvsrY 113 (167)
+.+|-.+....+- + +-+..|+.+-.+...+.|..|++.|.-+. .|.+.+....++..+.+..++.+.
T Consensus 24 Esliy~~e~~L~e-~--~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~ 91 (120)
T 2p32_A 24 ESYAFNLKQTIED-E--KLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKL 91 (120)
T ss_dssp HHHHHHHHHHHTC-T--TTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-h--hhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667677666643 1 12457999999999999999999996311 155667777888888888887653
Done!