BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030998
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 86/154 (55%), Gaps = 10/154 (6%)
Query: 1 MDPGLVYDIEIQDYLNYLCAMNYTSQQIRVVTGTS-DFTCEHGNLDLNYPSFII---ILN 56
+DPGLVYD QDY+N LC++N+T +Q + + +S C + + DLNYPSFI I
Sbjct: 494 LDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPSADLNYPSFIALYSIEG 553
Query: 57 NSNTASFTFKRVLTNVADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNIN 116
N FKR +TNV +TY A +KAP T++V P L F K K ++LT+
Sbjct: 554 NFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRY- 612
Query: 117 LGNAFSPKSNFLGNFGYLTWYEVKRKHTVRSPIV 150
+G+ + N G +TW E H+VRSPIV
Sbjct: 613 IGDEGQSR-----NVGSITWVEQNGNHSVRSPIV 641
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 82/152 (53%), Gaps = 17/152 (11%)
Query: 3 PGLVYDIEIQDYLNYLCAMNYTSQQIRVVTGTSDFT-CEHGN----LDLNYPSFIIILNN 57
PGLVYD DY+ +LC Y +Q +R +TG D++ C GN DLNYPSF + ++
Sbjct: 476 PGLVYDANESDYVKFLCGQGYNTQAVRRITG--DYSACTSGNTGRVWDLNYPSFGLSVSP 533
Query: 58 SNTASFTFKRVLTNVADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINL 117
S T + F R LT+VA STY A + AP G+T++V P LSF G + F+LTV ++
Sbjct: 534 SQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI 593
Query: 118 GNAFSPKSNFLGNFGYLTWYEVKRKHTVRSPI 149
S L W + H VRSPI
Sbjct: 594 KGFVVSAS--------LVWSD--GVHYVRSPI 615
>pdb|2R3B|A Chain A, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.80 A
Resolution
pdb|2R3B|B Chain B, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.80 A
Resolution
pdb|2R3E|A Chain A, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.95 A
Resolution
Length = 310
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 MDPGLVYDIEIQDYLNYLCAMNYTSQQIRVVTGTSDFTCEHGNLDLNYPSFII 53
+ PGL D Q L + A + QQ ++ G++ GN L YP ++
Sbjct: 117 IGPGLGLDATAQQILKXVLA-QHQKQQWLIIDGSAITLFSQGNFSLTYPEKVV 168
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 9 IEIQDYLNYLCAMNYT--SQQIRVVTGTSDFTCEHGNLDLNYPSFIIILNNSNTASFTFK 66
+E+ D++ L A + SQ+ + FT EH NL++N P +N ++
Sbjct: 12 LELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKN----RYANVIAYDHS 67
Query: 67 RVL 69
RVL
Sbjct: 68 RVL 70
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 103 KFSKAEFSLTVNINLGNAFSPKSNFLGNFGYLTWYEVKRKHTVRSPIVAAFANNSRGVTI 162
+F K EF +T+ + G P S F K VR I A NN + VT+
Sbjct: 173 RFLKNEFGVTIREDSGIGIKPISEF------------ATKRLVRMAIRYAIENNRKSVTL 220
Query: 163 V 163
V
Sbjct: 221 V 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,747,034
Number of Sequences: 62578
Number of extensions: 175764
Number of successful extensions: 400
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 10
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)