Query 030998
Match_columns 167
No_of_seqs 134 out of 860
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:02:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6s_A Subtilisin-like proteas 100.0 6.3E-46 2.2E-50 343.6 17.1 145 1-154 494-645 (649)
2 3vta_A Cucumisin; subtilisin-l 100.0 4.6E-42 1.6E-46 315.4 14.9 143 1-154 474-620 (621)
3 1xf1_A C5A peptidase, SCP; hyd 99.4 7.8E-13 2.7E-17 126.4 10.1 101 50-155 491-607 (926)
4 2ys4_A Hydrocephalus-inducing 90.5 1.7 6E-05 30.9 8.4 54 60-118 40-93 (122)
5 2r39_A FIXG-related protein; s 68.6 26 0.00088 24.6 7.6 52 64-117 34-85 (118)
6 2kq1_A BH0266 protein; solutio 67.8 0.68 2.3E-05 33.3 -1.1 37 80-116 72-110 (119)
7 2e6j_A Hydin protein; PAPD, st 65.6 17 0.00057 24.7 5.9 55 62-117 27-82 (112)
8 3lyw_A YBBR family protein; st 57.8 4.1 0.00014 28.4 1.5 31 70-100 50-81 (90)
9 2qsv_A Uncharacterized protein 55.9 20 0.00069 27.8 5.5 51 63-117 21-71 (220)
10 3idu_A Uncharacterized protein 51.2 42 0.0014 24.3 6.2 51 60-114 32-83 (127)
11 3qbt_B Inositol polyphosphate 50.9 39 0.0013 24.6 6.1 53 63-116 45-101 (140)
12 2cql_A OK/SW-CL.103, 60S ribos 50.3 24 0.00084 24.7 4.6 32 80-111 14-45 (100)
13 3lxu_X Tripeptidyl-peptidase 2 42.3 19 0.00064 36.2 3.9 51 94-153 599-652 (1354)
14 2eea_A Filamin-B; beta-sandwic 35.5 1.1E+02 0.0037 21.1 6.4 70 69-158 44-113 (115)
15 2l04_A Major tail protein V; b 32.3 65 0.0022 22.0 4.4 27 90-117 8-34 (91)
16 3qis_A Inositol polyphosphate 31.9 99 0.0034 25.9 6.4 72 45-117 24-105 (366)
17 3fyf_A Protein BVU-3222; struc 30.4 1.1E+02 0.0039 23.7 5.9 32 62-96 118-152 (176)
18 1vq8_E 50S ribosomal protein L 27.1 1.2E+02 0.0041 23.3 5.5 28 82-109 5-32 (178)
19 3u5e_H L8, RP24, YL11, 60S rib 26.2 1.2E+02 0.0042 23.5 5.5 29 82-110 9-37 (191)
20 2l3u_A YBBR family protein; be 26.2 7.7 0.00026 26.7 -1.4 32 70-101 53-85 (98)
21 2bp3_A Filamin A; structural p 26.0 1.5E+02 0.005 19.6 6.1 62 73-154 33-94 (97)
22 2x41_A Beta-glucosidase; hydro 25.0 1.8E+02 0.0062 26.8 7.3 76 44-121 596-682 (721)
23 1wic_A Hypothetical protein ri 24.2 2.1E+02 0.0073 20.9 6.7 50 64-116 38-87 (152)
24 3iz5_F 60S ribosomal protein L 24.0 1.2E+02 0.0041 23.5 5.0 29 82-110 9-37 (190)
25 3j21_F 50S ribosomal protein L 24.0 1.1E+02 0.0038 23.6 4.9 31 80-110 8-38 (184)
26 1rl6_A Protein (ribosomal prot 24.0 1.1E+02 0.0038 23.4 4.8 28 82-109 7-34 (177)
27 1w8o_A Bacterial sialidase; 3D 23.3 3.6E+02 0.012 23.2 12.2 64 47-117 363-427 (601)
28 3v2d_H 50S ribosomal protein L 22.4 1.2E+02 0.0041 23.3 4.7 27 83-109 9-35 (180)
29 4a17_E RPL9, 60S ribosomal pro 22.2 1.1E+02 0.0039 23.6 4.6 30 82-111 9-38 (188)
30 2p26_A Integrin beta-2; hybrid 21.9 68 0.0023 26.3 3.4 25 91-115 74-99 (280)
31 2aan_A Auracyanin A; cupredoxi 21.8 60 0.002 22.9 2.7 38 71-112 11-50 (139)
32 1cee_B Wiskott-aldrich syndrom 21.5 45 0.0016 21.0 1.8 26 4-29 28-53 (59)
33 2zkr_e 60S ribosomal protein L 21.0 94 0.0032 24.2 3.9 28 82-109 9-36 (192)
34 3kd4_A Putative protease; stru 20.8 82 0.0028 27.6 3.9 37 76-112 424-460 (506)
35 1nkw_E 50S ribosomal protein L 20.1 1.2E+02 0.0042 24.0 4.4 16 86-101 39-54 (212)
No 1
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=100.00 E-value=6.3e-46 Score=343.62 Aligned_cols=145 Identities=40% Similarity=0.690 Sum_probs=126.6
Q ss_pred CCCceeeeCChhhHHHhhhcCCCCcceeeeeecccccc--cCCCCCCCCcceEEEEecCCCCee-----EEEEEEEEecC
Q 030998 1 MDPGLVYDIEIQDYLNYLCAMNYTSQQIRVVTGTSDFT--CEHGNLDLNYPSFIIILNNSNTAS-----FTFKRVLTNVA 73 (167)
Q Consensus 1 ldPGLVYD~~~~DYi~fLC~lgy~~~~i~~it~~~~~~--C~~~~~dLNYPSi~v~~~~~~~~~-----~tv~RTVTNVg 73 (167)
+|||||||++++||++|||++||+.++|+.|++. +++ |+....|||||||+|++. +... +||+|||||||
T Consensus 494 ~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~-~~~~~C~~~~~~lNyPs~~~~~~--~~~~~~~~~~~~~Rtvtnvg 570 (649)
T 3i6s_A 494 LDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARS-SASHNCSNPSADLNYPSFIALYS--IEGNFTLLEQKFKRTVTNVG 570 (649)
T ss_dssp TCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTT-TSCC-CCCCCCCCCCSSEEEEEC--CSSCCCCEEEEEEEEEEECC
T ss_pred cCccccccCCchhHHHhhhcCCCCcccceeeecC-CCcCCCCCchhhcCCCcEEeecc--cCCCCccceEEEEEEEEEeC
Confidence 6999999999999999999999999999999995 677 987338999999999973 1233 89999999999
Q ss_pred CCCcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEccccccCCCCCccceEEEEEEEeCCCceEEEceEEEEE
Q 030998 74 DTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINLGNAFSPKSNFLGNFGYLTWYEVKRKHTVRSPIVAAF 153 (167)
Q Consensus 74 ~~~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~~~~~~~~~~~~~~fGsl~W~d~~g~h~VRSPIaV~~ 153 (167)
+++++|+|+|++|+|++|+|+|++|+|++.+||++|+|+|+.... ..+.| .||+|+|+|++|+|.|||||+|++
T Consensus 571 ~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~----~~~~~--~fg~l~w~~~~~~h~vrsPi~v~~ 644 (649)
T 3i6s_A 571 KGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD----EGQSR--NVGSITWVEQNGNHSVRSPIVTSP 644 (649)
T ss_dssp --CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC-------CC--CEEEEEEEETTSCCEEEEEEEEEE
T ss_pred CCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEeccc----CCCce--EEEEEEEEcCCCCeEEEEeEEEEE
Confidence 999999999999999999999999999999999999999998753 44568 999999999657899999999997
Q ss_pred e
Q 030998 154 A 154 (167)
Q Consensus 154 ~ 154 (167)
.
T Consensus 645 ~ 645 (649)
T 3i6s_A 645 I 645 (649)
T ss_dssp C
T ss_pred c
Confidence 6
No 2
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=100.00 E-value=4.6e-42 Score=315.37 Aligned_cols=143 Identities=42% Similarity=0.671 Sum_probs=107.4
Q ss_pred CCCceeeeCChhhHHHhhhcCCCCcceeeeeecccccccCCCC----CCCCcceEEEEecCCCCeeEEEEEEEEecCCCC
Q 030998 1 MDPGLVYDIEIQDYLNYLCAMNYTSQQIRVVTGTSDFTCEHGN----LDLNYPSFIIILNNSNTASFTFKRVLTNVADTR 76 (167)
Q Consensus 1 ldPGLVYD~~~~DYi~fLC~lgy~~~~i~~it~~~~~~C~~~~----~dLNYPSi~v~~~~~~~~~~tv~RTVTNVg~~~ 76 (167)
+|||||||++++||+.|||++||+..+|+.++++ ...|+... .|||||||++.....+..+.+|+|||||||+..
T Consensus 474 ~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~ 552 (621)
T 3vta_A 474 VRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD-YSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQA 552 (621)
T ss_dssp SCCSEECCCCGGGCC------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSC
T ss_pred cCCCeEeecccchhhhhhcccCCCchhheeeecc-ccccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCC
Confidence 6999999999999999999999999999999985 77887543 799999999987655678899999999999999
Q ss_pred cceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEccccccCCCCCccceEEEEEEEeCCCceEEEceEEEEEe
Q 030998 77 STYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINLGNAFSPKSNFLGNFGYLTWYEVKRKHTVRSPIVAAFA 154 (167)
Q Consensus 77 stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~~~~~~~~~~~~~~fGsl~W~d~~g~h~VRSPIaV~~~ 154 (167)
++|+|+|++|+|++|+|+|++|+|++.|||++|+|+|+.. ..+.+ .||+|+|+| |+|.|||||+|+..
T Consensus 553 ~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~------~~~~~--~~g~l~w~d--~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 553 STYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS------IKGFV--VSASLVWSD--GVHYVRSPITITSL 620 (621)
T ss_dssp EEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC------CCSSE--EEEEEEEEC--SSCCCEEEEEEECC
T ss_pred eEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec------CCCce--EEEEEEEEc--CCEEEEeCEEEEEe
Confidence 9999999999999999999999999999999999999864 34678 999999999 99999999999853
No 3
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=99.39 E-value=7.8e-13 Score=126.38 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=76.4
Q ss_pred eEEEEecCCCCeeEEEEEEEEecCCC--CcceEEEEEC--CCCcEEEEEcCEEEEeec-------CceEEEEEEEEEccc
Q 030998 50 SFIIILNNSNTASFTFKRVLTNVADT--RSTYTAAVKA--PVGMTVTVEPATLSFAGK-------FSKAEFSLTVNINLG 118 (167)
Q Consensus 50 Si~v~~~~~~~~~~tv~RTVTNVg~~--~stY~a~V~~--P~gv~V~V~P~~L~F~~~-------gqk~sf~Vt~~~~~~ 118 (167)
+|.+... ....+++|||||||+. ..+|++++.. |+|..++|.|..|.|... ||+++|+|+|+....
T Consensus 491 ~i~l~~~---~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~ 567 (926)
T 1xf1_A 491 KVHLNNV---SDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRF 567 (926)
T ss_dssp CEEEEEE---CSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHH
T ss_pred eeecccc---CccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCcc
Confidence 4555432 3468899999999984 4689999876 789999999999999877 999999999997520
Q ss_pred c-cc---CCCCCccceEEEEEEEeCCCceE-EEceEEEEEee
Q 030998 119 N-AF---SPKSNFLGNFGYLTWYEVKRKHT-VRSPIVAAFAN 155 (167)
Q Consensus 119 ~-~~---~~~~~~~~~fGsl~W~d~~g~h~-VRSPIaV~~~~ 155 (167)
. .. .+.+.+ .||+|+|+++.+.|. ||+|+++....
T Consensus 568 ~~~~~~~~~~~~~--~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 568 SKDLLAQMKNGYF--LEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp HHHHHHHSTTCEE--EEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred chhhcccccCCcE--EEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 0 00 023456 899999994326665 99999997644
No 4
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.51 E-value=1.7 Score=30.86 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=42.6
Q ss_pred CeeEEEEEEEEecCCCCcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEccc
Q 030998 60 TASFTFKRVLTNVADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINLG 118 (167)
Q Consensus 60 ~~~~tv~RTVTNVg~~~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~~ 118 (167)
....+.+=.++|+|.....|+....+| .+|.|+.-.. ++||++.++|+|.....
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~~----F~i~P~~g~L-~pg~~~~i~V~F~P~~~ 93 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCRP----FSIEPAIGTL-NVGESMQLEVEFEPQSV 93 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCTT----EEEESSEEEE-CTTCEEEEEEEECCSSS
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCCC----eEEECCcCEE-CCCCEEEEEEEEEcCCC
Confidence 345666778999999888887765433 5568999877 78999999999998754
No 5
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=68.59 E-value=26 Score=24.62 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=41.4
Q ss_pred EEEEEEEecCCCCcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEcc
Q 030998 64 TFKRVLTNVADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINL 117 (167)
Q Consensus 64 tv~RTVTNVg~~~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~ 117 (167)
..+=.+.|-....-+|+.++..++|+++. .|..+.. ++||..++.|.+....
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 35556899999899999999988887753 4666766 6899999999998754
No 6
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=67.84 E-value=0.68 Score=33.33 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=24.7
Q ss_pred EEEEE-CCCCcEEEEEcCEEEEee-cCceEEEEEEEEEc
Q 030998 80 TAAVK-APVGMTVTVEPATLSFAG-KFSKAEFSLTVNIN 116 (167)
Q Consensus 80 ~a~V~-~P~gv~V~V~P~~L~F~~-~gqk~sf~Vt~~~~ 116 (167)
.+.++ .|.|+++++.|+++..+- ..++++|.|++...
T Consensus 72 pv~v~~lp~~v~v~v~P~~V~V~i~~~~~k~~pV~v~~~ 110 (119)
T 2kq1_A 72 DVEHRGFPGDLAVTVEPRMARVQLEERQTVSVPVTVEMI 110 (119)
T ss_dssp ECEEESSCTTSEEEESCCEEEEEEESCCCCCCCCCCCCC
T ss_pred EEEEecCCCCeEEEEcCCEEEEEEEEEEEEEEEEEEEEC
Confidence 33445 689999999999887653 23456666665543
No 7
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.61 E-value=17 Score=24.71 Aligned_cols=55 Identities=7% Similarity=0.159 Sum_probs=40.3
Q ss_pred eEEEEEEEEecCCCCcceEEEEEC-CCCcEEEEEcCEEEEeecCceEEEEEEEEEcc
Q 030998 62 SFTFKRVLTNVADTRSTYTAAVKA-PVGMTVTVEPATLSFAGKFSKAEFSLTVNINL 117 (167)
Q Consensus 62 ~~tv~RTVTNVg~~~stY~a~V~~-P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~ 117 (167)
..+..=+++|.|.....|+..... +.+-..++.|..=.. .+|+++.++|+|.+..
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII 82 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC
T ss_pred EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC
Confidence 455556789999999999883211 112346678998877 7899999999998754
No 8
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=57.82 E-value=4.1 Score=28.43 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=24.2
Q ss_pred EecCCCCcceEEEEECCCCc-EEEEEcCEEEE
Q 030998 70 TNVADTRSTYTAAVKAPVGM-TVTVEPATLSF 100 (167)
Q Consensus 70 TNVg~~~stY~a~V~~P~gv-~V~V~P~~L~F 100 (167)
+++.++.-+|.+.+..|+|+ -+.|+|+.+..
T Consensus 50 sg~~~G~~~~~V~v~~P~G~~lv~vsP~~V~~ 81 (90)
T 3lyw_A 50 SGSEPGEHDYEVKVEPIPNIKIVEISPRVVTL 81 (90)
T ss_dssp TTCCSEEEEEECEECCCTTEEEEEEESSEEEE
T ss_pred cCCCCCcEeEEEEEECCCCCEEEEEccceEEE
Confidence 44555566888889999997 56899998876
No 9
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=55.86 E-value=20 Score=27.81 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=38.6
Q ss_pred EEEEEEEEecCCCCcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEcc
Q 030998 63 FTFKRVLTNVADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINL 117 (167)
Q Consensus 63 ~tv~RTVTNVg~~~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~ 117 (167)
.+.+=+++|.|+..-+++.. ..|..+.+.+.|..| ++||+...+|++....
T Consensus 21 ~~~~~~i~N~g~~pl~i~~~-~~p~~~~~~~~~~~I---~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 21 GVVRLVVNNTDESDLQVAVV-SLPSFVSLDDRAFRL---QAREPRELNLSLAVPR 71 (220)
T ss_dssp CEEEEEEEECSSSCEEEEEE-ECCTTEECSCCEEEE---CSSSCEEEEEEECCCT
T ss_pred ceEEEEEEeCCCCceEEEec-cCCCceEeeeCccee---CCCCceEEEEEEcchh
Confidence 34445689999877776653 358888877777777 7899999999998765
No 10
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=51.19 E-value=42 Score=24.34 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=34.5
Q ss_pred CeeEEEEEEEEecCCCC-cceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEE
Q 030998 60 TASFTFKRVLTNVADTR-STYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVN 114 (167)
Q Consensus 60 ~~~~tv~RTVTNVg~~~-stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~ 114 (167)
....+++=||+|.|... +.|++.+.. .|-.+.-.+- .. +.|+++++++++.
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyv-ng~~v~t~~v--~L-a~G~s~tv~f~~~ 83 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYI-NGTLYKNWTV--SL-GPKEEKVLTFNWT 83 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEE-TTEEEEEEEE--EE-CTTCEEEEEEEEC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEE-CCEEEeeEEe--cc-CCCCeEEEEEEEE
Confidence 46789999999999854 678887754 4655543322 33 6677777666664
No 11
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=50.94 E-value=39 Score=24.57 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=38.3
Q ss_pred EEEEEEEEecCCCCcceEEEEECC----CCcEEEEEcCEEEEeecCceEEEEEEEEEc
Q 030998 63 FTFKRVLTNVADTRSTYTAAVKAP----VGMTVTVEPATLSFAGKFSKAEFSLTVNIN 116 (167)
Q Consensus 63 ~tv~RTVTNVg~~~stY~a~V~~P----~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~ 116 (167)
.+-+=+++|.|.-+..|+...... ..--.+|+|..=.. .+|++...+|++...
T Consensus 45 ~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~ 101 (140)
T 3qbt_B 45 QKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVS 101 (140)
T ss_dssp EEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBC
T ss_pred eeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEc
Confidence 344446799999999999974311 11135668998877 789999999999853
No 12
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=50.29 E-value=24 Score=24.66 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.0
Q ss_pred EEEEECCCCcEEEEEcCEEEEeecCceEEEEE
Q 030998 80 TAAVKAPVGMTVTVEPATLSFAGKFSKAEFSL 111 (167)
Q Consensus 80 ~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~V 111 (167)
+..|.-|+||+|++.-..++++.+.-++++.+
T Consensus 14 k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~ 45 (100)
T 2cql_A 14 NQTVDIPENVDITLKGRTVIVKGPRGTLRRDF 45 (100)
T ss_dssp CEEECCCSSCEEEEETTEEEEEETTEEEEEEC
T ss_pred cCcEEcCCCCEEEEeCCEEEEECCCceEEEEe
Confidence 45677899999999999999987666655444
No 13
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=42.34 E-value=19 Score=36.22 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=39.0
Q ss_pred EcCEEEEeecCceEEEEEEEEEccccccCCCCCccceEEEEEEEeC---CCceEEEceEEEEE
Q 030998 94 EPATLSFAGKFSKAEFSLTVNINLGNAFSPKSNFLGNFGYLTWYEV---KRKHTVRSPIVAAF 153 (167)
Q Consensus 94 ~P~~L~F~~~gqk~sf~Vt~~~~~~~~~~~~~~~~~~fGsl~W~d~---~g~h~VRSPIaV~~ 153 (167)
-|+.|.. .++.++|.|.+..+.. .... .|+.|...|. ..+-..|.||.|..
T Consensus 599 ~p~~l~l--~~~~r~~~v~vDp~~L-----~~G~--h~~~v~~~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 599 CGAFLDL--SYGTRSIAVRVDPTGL-----QPGV--HSAVIRAYDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp ECSCEEC--TTSCEEEEEEECGGGC-----CSEE--EEEEEEEEESSCTTSCCSEEEEEEEEE
T ss_pred cccceee--cCCCceEEEEECCCCC-----CCcc--eeEEEEEEEcCCcccCceEEeeEEEEe
Confidence 4888866 6889999999998874 3355 7899998875 23467899999864
No 14
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.54 E-value=1.1e+02 Score=21.10 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=46.5
Q ss_pred EEecCCCCcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEccccccCCCCCccceEEEEEEEeCCCceEEEce
Q 030998 69 LTNVADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINLGNAFSPKSNFLGNFGYLTWYEVKRKHTVRSP 148 (167)
Q Consensus 69 VTNVg~~~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~~~~~~~~~~~~~~fGsl~W~d~~g~h~VRSP 148 (167)
|+-.+.......+.|..|.++.+. . ...+--+|.|+++... .+.+ .=++.| + |.|.--||
T Consensus 44 v~t~dag~~~l~v~v~~p~~~~~~-------v-~d~~dGty~v~Y~p~~------~G~y---~I~V~~-~--g~~I~gSP 103 (115)
T 2eea_A 44 IVTEDAGEGGLDLAIEGPSKAEIS-------C-IDNKDGTCTVTYLPTL------PGDY---SILVKY-N--DKHIPGSP 103 (115)
T ss_dssp EECSSCCSSCEEEEEESSSCCEEC-------C-BCCSSSEEEEEEECSS------CSCE---EEEEEE-S--SSBCTTCS
T ss_pred EEcccCCCCceEEEEECCCCceEE-------E-EECCCCEEEEEEEeCC------CeeE---EEEEEE-C--CEECCCCC
Confidence 444444456788999999886542 2 2334457999998764 2455 335667 4 78999999
Q ss_pred EEEEEeeCCC
Q 030998 149 IVAAFANNSR 158 (167)
Q Consensus 149 IaV~~~~~~~ 158 (167)
..+.....++
T Consensus 104 F~v~v~~~~~ 113 (115)
T 2eea_A 104 FTAKITDDSR 113 (115)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCc
Confidence 9998765543
No 15
>2l04_A Major tail protein V; bacteriophage lambda, phage tail, GPV, IG-like domain, viral; NMR {Enterobacteria phage lambda}
Probab=32.26 E-value=65 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=21.0
Q ss_pred EEEEEcCEEEEeecCceEEEEEEEEEcc
Q 030998 90 TVTVEPATLSFAGKFSKAEFSLTVNINL 117 (167)
Q Consensus 90 ~V~V~P~~L~F~~~gqk~sf~Vt~~~~~ 117 (167)
.|++.|..+.. ..|++..++.++....
T Consensus 8 ~i~l~~~~~~l-~vG~t~~L~atv~P~~ 34 (91)
T 2l04_A 8 GMTVTPASTSV-VKGQSTTLTVAFQPEG 34 (91)
T ss_dssp CEEEECCCEEE-ETTCEEEEEEEECCSS
T ss_pred EEEEeCCceEE-EcCCEEEEEEEEeccc
Confidence 45678999988 6899988888887654
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=31.93 E-value=99 Score=25.93 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=44.3
Q ss_pred CCCcceEEEEec----C--CCCeeEEEEEEEEecCCCCcceEEEEECCCCc-E---EEEEcCEEEEeecCceEEEEEEEE
Q 030998 45 DLNYPSFIIILN----N--SNTASFTFKRVLTNVADTRSTYTAAVKAPVGM-T---VTVEPATLSFAGKFSKAEFSLTVN 114 (167)
Q Consensus 45 dLNYPSi~v~~~----~--~~~~~~tv~RTVTNVg~~~stY~a~V~~P~gv-~---V~V~P~~L~F~~~gqk~sf~Vt~~ 114 (167)
+-+.|++++... + +.....+-+=|++|.|.-...|+..-...... . .+|+|..=.. .+|++...+|++.
T Consensus 24 n~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~ 102 (366)
T 3qis_A 24 NDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVY 102 (366)
T ss_dssp ----CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEEC
T ss_pred hccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEE
Confidence 446677776421 0 01123344446799999999998854322222 1 6778998766 7899999999887
Q ss_pred Ecc
Q 030998 115 INL 117 (167)
Q Consensus 115 ~~~ 117 (167)
...
T Consensus 103 v~~ 105 (366)
T 3qis_A 103 VSK 105 (366)
T ss_dssp BCT
T ss_pred ECH
Confidence 654
No 17
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=30.39 E-value=1.1e+02 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=15.5
Q ss_pred eEEEEEEEEecCCCCcceEEEEECCCC---cEEEEEcC
Q 030998 62 SFTFKRVLTNVADTRSTYTAAVKAPVG---MTVTVEPA 96 (167)
Q Consensus 62 ~~tv~RTVTNVg~~~stY~a~V~~P~g---v~V~V~P~ 96 (167)
...+.=.|++.|. +|++.+.-.+| .+|+|.|.
T Consensus 118 n~~~~f~v~g~~d---sa~v~i~l~~g~n~asv~V~pn 152 (176)
T 3fyf_A 118 NVYYNYGINGIAV---SATVSIVLTGGTNQASVTINPN 152 (176)
T ss_dssp CEEEEEEEECSSC---EEEEEEEECTTSSEEEEEEEET
T ss_pred cEEEEEEEcccce---EEEEEEEEeCCCCeEEEEEccc
Confidence 3444444444443 45555544443 55555554
No 18
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=27.08 E-value=1.2e+02 Score=23.34 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=20.5
Q ss_pred EEECCCCcEEEEEcCEEEEeecCceEEE
Q 030998 82 AVKAPVGMTVTVEPATLSFAGKFSKAEF 109 (167)
Q Consensus 82 ~V~~P~gv~V~V~P~~L~F~~~gqk~sf 109 (167)
.|.-|+||+|++.-..++++.+.-+++.
T Consensus 5 pI~IP~gV~v~i~~~~vtVkGpkG~L~~ 32 (178)
T 1vq8_E 5 ELEIPEDVDAEQDHLDITVEGDNGSVTR 32 (178)
T ss_dssp EEECCTTCEEEEETTEEEEEETTEEEEE
T ss_pred cEEcCCCCEEEEeCCEEEEECCCeEEEE
Confidence 4667888888888888888766555443
No 19
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=26.25 E-value=1.2e+02 Score=23.47 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEECCCCcEEEEEcCEEEEeecCceEEEE
Q 030998 82 AVKAPVGMTVTVEPATLSFAGKFSKAEFS 110 (167)
Q Consensus 82 ~V~~P~gv~V~V~P~~L~F~~~gqk~sf~ 110 (167)
.|.-|+|++|++.-..++++.+.-+++..
T Consensus 9 ~I~IP~gV~v~i~~~~V~VkGPkG~L~~~ 37 (191)
T 3u5e_H 9 QIEVPEGVTVSIKSRIVKVVGPRGTLTKN 37 (191)
T ss_dssp EEECCTTCEEEEETTEEEEEETTEEEEEE
T ss_pred cEECCCCcEEEEeCCEEEEEcCCeEEEEE
Confidence 46668888888888888887666555543
No 20
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=26.16 E-value=7.7 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=20.0
Q ss_pred EecCCCCcceEEEEECCCCcE-EEEEcCEEEEe
Q 030998 70 TNVADTRSTYTAAVKAPVGMT-VTVEPATLSFA 101 (167)
Q Consensus 70 TNVg~~~stY~a~V~~P~gv~-V~V~P~~L~F~ 101 (167)
++.+.+.-++.+.+..|.|+. +++.|.+++.+
T Consensus 53 s~l~~G~~~v~v~v~~P~~~~~v~i~P~~V~V~ 85 (98)
T 2l3u_A 53 TGKAVGEHTVKIYWQLPAGIEMVSIPDVTYTLK 85 (98)
T ss_dssp SSCCSBCCEECCCCBCSSSCEEEECCCEECCEE
T ss_pred cCCcCceEEEeEEEECCCCcEEEEeCCCEEEEE
Confidence 344443334444567899987 47888877653
No 21
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=26.04 E-value=1.5e+02 Score=19.63 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=39.4
Q ss_pred CCCCcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEccccccCCCCCccceEEEEEEEeCCCceEEEceEEEE
Q 030998 73 ADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINLGNAFSPKSNFLGNFGYLTWYEVKRKHTVRSPIVAA 152 (167)
Q Consensus 73 g~~~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~~~~~~~~~~~~~~fGsl~W~d~~g~h~VRSPIaV~ 152 (167)
+......++.|..|.++.+.+. - ++--+|.|+++... + +.+ .=++.| + +.|.--||..+.
T Consensus 33 dag~~~l~v~v~~p~~~~~~v~-----d---~~dGty~v~Y~p~~-----~-G~y---~i~V~~-~--g~~I~gSPF~v~ 92 (97)
T 2bp3_A 33 DAGEGGLSLAIEGPSKAEISCT-----D---NQDGTCSVSYLPVL-----P-GDY---SILVKY-N--EQHVPGSPFTAR 92 (97)
T ss_dssp TCCSEEEEEEEEESSCCEEEEE-----E---CSSSEEEEEEECSS-----C-EEE---EEEEEE-T--TEECTTCSEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEE-----E---CCCCEEEEEEEeCC-----C-CcE---EEEEEE-C--CEECCCcCEEEE
Confidence 3334567778888888665421 2 22347999998753 2 333 334556 4 789989999887
Q ss_pred Ee
Q 030998 153 FA 154 (167)
Q Consensus 153 ~~ 154 (167)
..
T Consensus 93 v~ 94 (97)
T 2bp3_A 93 VT 94 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 22
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=24.97 E-value=1.8e+02 Score=26.75 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=46.6
Q ss_pred CCCCcceEEEEecC--CCCeeEEEEEEEEecCCCCc--ceEEEEECCCCcEEEEEcC-EE-EEe-----ecCceEEEEEE
Q 030998 44 LDLNYPSFIIILNN--SNTASFTFKRVLTNVADTRS--TYTAAVKAPVGMTVTVEPA-TL-SFA-----GKFSKAEFSLT 112 (167)
Q Consensus 44 ~dLNYPSi~v~~~~--~~~~~~tv~RTVTNVg~~~s--tY~a~V~~P~gv~V~V~P~-~L-~F~-----~~gqk~sf~Vt 112 (167)
.-|-|=+|...... ......+|+=+|||.|.... +=++-+..|.+- + .+|. .| -|. ++||+++.+++
T Consensus 596 ~GLSYTtF~ys~~~~~~~~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~-~-~~P~k~L~gF~kv~~L~pGes~~V~~~ 673 (721)
T 2x41_A 596 YGLSYTTFEYSDLNVSFDGETLRVQYRIENTGGRAGKEVSQVYIKAPKGK-I-DKPFQELKAFHKTRLLNPGESEEVVLE 673 (721)
T ss_dssp CCBCSSCEEEEEEEEEECSSEEEEEEEEEECSSSCBCCEEEEEEECCCSS-S-CCCSCEEEEEEECCCBCTTCEEEEEEE
T ss_pred CCCCcceeEeeceEeecCCCeEEEEEEEEECCCCCCcEEeeEEEccCCCC-C-CCchHHhhcccccccCCCCCeEEEEEE
Confidence 45666666655321 01346889999999998654 445556767531 1 1443 23 244 55899999999
Q ss_pred EEEcccccc
Q 030998 113 VNINLGNAF 121 (167)
Q Consensus 113 ~~~~~~~~~ 121 (167)
|.......+
T Consensus 674 l~~~~l~~~ 682 (721)
T 2x41_A 674 IPVRDLASF 682 (721)
T ss_dssp EEGGGGCEE
T ss_pred ECHHHhcEE
Confidence 987654333
No 23
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=24.16 E-value=2.1e+02 Score=20.90 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=40.1
Q ss_pred EEEEEEEecCCCCcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEc
Q 030998 64 TFKRVLTNVADTRSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNIN 116 (167)
Q Consensus 64 tv~RTVTNVg~~~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~ 116 (167)
+-.=+++|..+..-.|++.-.+|.-+. |+|..=.. .+|++....|++.+.
T Consensus 38 ~~~l~L~N~s~~~VaFKVKTT~p~~y~--VrP~~GiI-~P~~s~~V~V~lq~~ 87 (152)
T 1wic_A 38 KTLIVLTNVTKNIVAFKVRTTAPEKYR--VKPSNSSC-DPGASIDIIVSPHGG 87 (152)
T ss_dssp CEEEEEEBCSSSCEEEEEEESCTTTEE--EESSEEEE-CTTCEEEEEEEECSS
T ss_pred EEEEEEEcCCCCeEEEEEECCCCCcee--ecCCCcEE-CCCCeEEEEEEecCc
Confidence 445678999988889999999998766 58887544 789999999998754
No 24
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=24.02 E-value=1.2e+02 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEECCCCcEEEEEcCEEEEeecCceEEEE
Q 030998 82 AVKAPVGMTVTVEPATLSFAGKFSKAEFS 110 (167)
Q Consensus 82 ~V~~P~gv~V~V~P~~L~F~~~gqk~sf~ 110 (167)
.|.-|+|++|++.-..++++.+.-+++..
T Consensus 9 ~I~IP~gV~v~i~~~~V~VkGPkG~L~~~ 37 (190)
T 3iz5_F 9 TMEIPEGVTVQVAAKVVTVEGPRGKLTRN 37 (190)
T ss_dssp EEECCTTCEEEEETTEEEEEETTEEEEEE
T ss_pred cEECCCCCEEEEeCCEEEEECCCceEEEE
Confidence 45668888888888888887766555543
No 25
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.00 E-value=1.1e+02 Score=23.57 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=21.9
Q ss_pred EEEEECCCCcEEEEEcCEEEEeecCceEEEE
Q 030998 80 TAAVKAPVGMTVTVEPATLSFAGKFSKAEFS 110 (167)
Q Consensus 80 ~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~ 110 (167)
+-.|.-|+|++|++.-..++++.+.-+++..
T Consensus 8 ~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~ 38 (184)
T 3j21_F 8 REEVEIPEGVEVTVEGYKVKVKGPKGELERE 38 (184)
T ss_dssp EEEEECCSSCEEEESSSEEEEECSSCEEEEE
T ss_pred eEEEeCCCCcEEEEeCCEEEEEcCCeEEEEE
Confidence 3456778888888888888887665555543
No 26
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=23.97 E-value=1.1e+02 Score=23.42 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=18.8
Q ss_pred EEECCCCcEEEEEcCEEEEeecCceEEE
Q 030998 82 AVKAPVGMTVTVEPATLSFAGKFSKAEF 109 (167)
Q Consensus 82 ~V~~P~gv~V~V~P~~L~F~~~gqk~sf 109 (167)
.|.-|+||+|++.-..++++.+.-++++
T Consensus 7 pI~IP~gV~V~i~~~~VtVkGpkG~L~~ 34 (177)
T 1rl6_A 7 PIEIPAGVTVTVNGNTVTVKGPKGELTR 34 (177)
T ss_dssp CEECCTTCEEEEETTEEEEEETTEEEEE
T ss_pred ceEcCCCCEEEEeCCEEEEECCCeEEEE
Confidence 4556778888887777777665555443
No 27
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=23.30 E-value=3.6e+02 Score=23.22 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=42.5
Q ss_pred CcceEEEEecCCCCeeEEEEEEEEecCCCCcce-EEEEECCCCcEEEEEcCEEEEeecCceEEEEEEEEEcc
Q 030998 47 NYPSFIIILNNSNTASFTFKRVLTNVADTRSTY-TAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLTVNINL 117 (167)
Q Consensus 47 NYPSi~v~~~~~~~~~~tv~RTVTNVg~~~stY-~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt~~~~~ 117 (167)
.-|.+++.- ..+.+++=+|||-+...-.- ++++..|.|..++. ....| ++||+.+..++|+...
T Consensus 363 ~~~~~~~~~----g~~~~~~~~vtn~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~g~~~t~~~~vt~~~ 427 (601)
T 1w8o_A 363 TIPDVALEP----GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPL-MPGRQAKGQVTITVPA 427 (601)
T ss_dssp ECCCEEECT----TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCB-CTTCEEEEEEEEECCT
T ss_pred cCccceecC----CceeEEEEEEECCCceeccCceEEEecCCCcEEec--ccccc-CCCCceEEEEEEecCC
Confidence 346666552 35778888899965432222 55578899999886 34445 6799988877777654
No 28
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=22.37 E-value=1.2e+02 Score=23.29 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=15.5
Q ss_pred EECCCCcEEEEEcCEEEEeecCceEEE
Q 030998 83 VKAPVGMTVTVEPATLSFAGKFSKAEF 109 (167)
Q Consensus 83 V~~P~gv~V~V~P~~L~F~~~gqk~sf 109 (167)
|.-|+||+|++.-..++++.+.-+++.
T Consensus 9 I~IP~gV~v~i~~~~v~VkGpkG~L~~ 35 (180)
T 3v2d_H 9 IPVPKGVSVEVAPGRVKVKGPKGELEV 35 (180)
T ss_dssp EECCTTCEEEEETTEEEEECSSCEEEE
T ss_pred eeCCCCcEEEEeCCEEEEEeCCcEEEE
Confidence 444666666666666666555444443
No 29
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=22.24 E-value=1.1e+02 Score=23.60 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=22.8
Q ss_pred EEECCCCcEEEEEcCEEEEeecCceEEEEE
Q 030998 82 AVKAPVGMTVTVEPATLSFAGKFSKAEFSL 111 (167)
Q Consensus 82 ~V~~P~gv~V~V~P~~L~F~~~gqk~sf~V 111 (167)
.|.-|+|++|++.-..++++.+.-+++..+
T Consensus 9 ~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~ 38 (188)
T 4a17_E 9 NVPIPDKVTITAKQRVVEVKGPLGTIKRAF 38 (188)
T ss_dssp ECCCCTTCEEEEETTEEEEEETTEEEEEEC
T ss_pred cEECCCCcEEEEeCCEEEEEcCCeEEEEEc
Confidence 456689999999988888887766665544
No 30
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=21.86 E-value=68 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=19.0
Q ss_pred EEEEcCEEEEe-ecCceEEEEEEEEE
Q 030998 91 VTVEPATLSFA-GKFSKAEFSLTVNI 115 (167)
Q Consensus 91 V~V~P~~L~F~-~~gqk~sf~Vt~~~ 115 (167)
|.|+|..+..+ ++|+.++|.|+|+-
T Consensus 74 vQi~PQ~v~l~LRpGd~vsF~V~vry 99 (280)
T 2p26_A 74 KQLSPQKVTLYLRPGQAAAFNVTFRR 99 (280)
T ss_dssp SSEECSEEEEEECTTCCEEEEEEECC
T ss_pred eeeccceEEEEecCCCeEEEEEEEEe
Confidence 67788765543 67999999999874
No 31
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=21.79 E-value=60 Score=22.93 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=18.5
Q ss_pred ecCCCCcceEEEE--ECCCCcEEEEEcCEEEEeecCceEEEEEE
Q 030998 71 NVADTRSTYTAAV--KAPVGMTVTVEPATLSFAGKFSKAEFSLT 112 (167)
Q Consensus 71 NVg~~~stY~a~V--~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt 112 (167)
+-|...+++++.| .+- +. .-.|+.|++ +.|++..|+++
T Consensus 11 ~~~~~~~~~~V~v~~~~~-~~--~F~p~~i~v-~~G~~V~~~~~ 50 (139)
T 2aan_A 11 GGGSGSGPVTIEIGSKGE-EL--AFDKTELTV-SAGQTVTIRFK 50 (139)
T ss_dssp ------CCEEEEEEBCTT-SS--SBSCSEEEE-CTTCEEEEEEE
T ss_pred CCCCCCcCEEEEEEecCC-cc--EEcCCeEEE-CCCCEEEEEEE
Confidence 4455667777777 322 22 235777777 56766555443
No 32
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=21.53 E-value=45 Score=21.01 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=20.4
Q ss_pred ceeeeCChhhHHHhhhcCCCCcceee
Q 030998 4 GLVYDIEIQDYLNYLCAMNYTSQQIR 29 (167)
Q Consensus 4 GLVYD~~~~DYi~fLC~lgy~~~~i~ 29 (167)
|..++.-+..|..+|...|.+..+++
T Consensus 28 gf~~~g~pp~W~~ll~~sGIt~~e~k 53 (59)
T 1cee_B 28 GFDVNNLDPDLRSLFSRAGISEAQLT 53 (59)
T ss_dssp CCCCSSCCHHHHHHHTTTTSCSSCCC
T ss_pred CcccCCCCHHHHHHHHHcCCCHHHHh
Confidence 54445779999999999998877664
No 33
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.02 E-value=94 Score=24.16 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=18.7
Q ss_pred EEECCCCcEEEEEcCEEEEeecCceEEE
Q 030998 82 AVKAPVGMTVTVEPATLSFAGKFSKAEF 109 (167)
Q Consensus 82 ~V~~P~gv~V~V~P~~L~F~~~gqk~sf 109 (167)
.|.-|+||+|++.-..++++.+.-+++.
T Consensus 9 pI~IP~gV~V~i~~~~VtVkGpkG~L~~ 36 (192)
T 2zkr_e 9 TVDIPENVDITLKGRTVIVKGPRGTLRR 36 (192)
T ss_dssp -CCCCTTCEEEEETTEEEEEETTEEEEE
T ss_pred cEEcCCCCEEEEeCCEEEEECCCeEEEE
Confidence 3456788888888888877765555443
No 34
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=20.76 E-value=82 Score=27.60 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=26.7
Q ss_pred CcceEEEEECCCCcEEEEEcCEEEEeecCceEEEEEE
Q 030998 76 RSTYTAAVKAPVGMTVTVEPATLSFAGKFSKAEFSLT 112 (167)
Q Consensus 76 ~stY~a~V~~P~gv~V~V~P~~L~F~~~gqk~sf~Vt 112 (167)
..+|++++.-|+|.+|.-.|....+..+.-+.+++++
T Consensus 424 ~~~~~~~i~~P~g~~v~~~p~~~~i~~~~g~~~~~~~ 460 (506)
T 3kd4_A 424 REEVTYTVTPAEGMKLQTSTQEQVISKPFGKVTRTIT 460 (506)
T ss_dssp EEEEEEEEEECTTCEECSCCSCEEEEETTEEEEEEEE
T ss_pred eEEEEEEEECCCCCeeecCCcCeeecCCcEEEEEEEE
Confidence 4578899999999999888887777555444444443
No 35
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=20.05 E-value=1.2e+02 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=7.0
Q ss_pred CCCcEEEEEcCEEEEe
Q 030998 86 PVGMTVTVEPATLSFA 101 (167)
Q Consensus 86 P~gv~V~V~P~~L~F~ 101 (167)
|+||+|++.-..++++
T Consensus 39 P~gV~V~i~~~~VtVK 54 (212)
T 1nkw_E 39 PSGVTVNAQDGVFKVK 54 (212)
T ss_pred CCCcEEEEeCCEEEEE
Confidence 4444444444444443
Done!