Query 030999
Match_columns 167
No_of_seqs 104 out of 347
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 12:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 77.9 1.2 4.1E-05 33.6 2.4 27 5-38 49-75 (130)
2 3u5c_R RP51A, 40S ribosomal pr 33.4 31 0.0011 26.0 3.0 27 5-38 49-75 (136)
3 3iz6_Q 40S ribosomal protein S 24.5 39 0.0013 25.6 2.2 27 5-38 49-75 (141)
4 2gsm_B Cytochrome C oxidase su 22.1 1.2E+02 0.0041 24.6 4.9 18 97-114 77-94 (262)
5 3hb3_B Cytochrome C oxidase su 15.5 2E+02 0.0069 23.9 4.9 18 97-114 108-125 (298)
6 1v54_B Cytochrome C oxidase po 12.1 5E+02 0.017 20.3 6.2 23 91-113 57-79 (227)
7 2fm8_C Cell invasion protein S 11.0 93 0.0032 25.1 1.4 14 125-138 219-232 (240)
8 2fm9_A Cell invasion protein S 10.4 82 0.0028 25.1 0.9 12 127-138 195-206 (215)
9 2exn_A Hypothetical protein BO 10.4 69 0.0024 23.2 0.4 11 26-36 9-19 (136)
10 2k37_A Chlorosome protein A; b 10.2 92 0.0031 20.1 0.9 11 122-132 27-37 (59)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=77.93 E-value=1.2 Score=33.55 Aligned_cols=27 Identities=48% Similarity=0.570 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 030999 5 RLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQE 38 (167)
Q Consensus 5 r~~gd~~hl~s~~iLl~ki~~~kS~~GiSlkTQ~ 38 (167)
|++|...| +.|-.+...+.|||+|.|+
T Consensus 49 kIAGYVTh-------lmkriq~gpvrgis~klqE 75 (130)
T 2xzm_V 49 KIAGFATH-------LMKRIQKGPVRGISLKVQE 75 (130)
T ss_dssp HHHHHHHH-------HHHHTTTSCCTTCCCTTTT
T ss_pred cccchhhh-------HhhhcccCcccccccchhH
Confidence 56777777 4566667788999999996
No 2
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=33.42 E-value=31 Score=25.97 Aligned_cols=27 Identities=44% Similarity=0.551 Sum_probs=19.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 030999 5 RLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQE 38 (167)
Q Consensus 5 r~~gd~~hl~s~~iLl~ki~~~kS~~GiSlkTQ~ 38 (167)
|++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThL-------mKriq~GpvrgisiklqE 75 (136)
T 3u5c_R 49 KIAGYTTHL-------MKRIQKGPVRGISFKLQE 75 (136)
T ss_dssp HHHHHHHHH-------HHHHTTSCBTTBCCSHHH
T ss_pred ehhhhhhhh-------hcccccCCcccceeehhH
Confidence 456666664 455556678999999996
No 3
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.54 E-value=39 Score=25.58 Aligned_cols=27 Identities=44% Similarity=0.533 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccccccccchhH
Q 030999 5 RLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQE 38 (167)
Q Consensus 5 r~~gd~~hl~s~~iLl~ki~~~kS~~GiSlkTQ~ 38 (167)
|++|...|+ .|-.+.-.+.|||+|.|+
T Consensus 49 kIAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 49 KVAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhhheeeeh-------hhccccCCccccceehhH
Confidence 456666664 445555678999999996
No 4
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=22.07 E-value=1.2e+02 Score=24.61 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhhcCC
Q 030999 97 HWFIVLPCLVLALLINER 114 (167)
Q Consensus 97 ~~~li~p~~vLa~~~~~~ 114 (167)
..+.++|+++|.++.-|+
T Consensus 77 iiWTiiP~iILi~la~pS 94 (262)
T 2gsm_B 77 IAWTIVPIVILVAIGAFS 94 (262)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 446678888777665443
No 5
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=15.49 E-value=2e+02 Score=23.87 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHhhcCC
Q 030999 97 HWFIVLPCLVLALLINER 114 (167)
Q Consensus 97 ~~~li~p~~vLa~~~~~~ 114 (167)
..+.++|+++|.++.-|+
T Consensus 108 iiWTiiP~iILi~La~pS 125 (298)
T 3hb3_B 108 VIWTLVPVLILVAIGAFS 125 (298)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 346677877776654443
No 6
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=12.05 E-value=5e+02 Score=20.32 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=14.2
Q ss_pred ccccchhHHHHHHHHHHHHhhcC
Q 030999 91 DQDTFRHWFIVLPCLVLALLINE 113 (167)
Q Consensus 91 ~~D~f~~~~li~p~~vLa~~~~~ 113 (167)
+..+.-..+-++|++++.++.-|
T Consensus 57 ~~~~lEiiWTiiP~iil~~la~p 79 (227)
T 1v54_B 57 DAQEVETIWTILPAIILILIALP 79 (227)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeEEeeehHHHHHHHHHHHH
Confidence 33344455778888887765444
No 7
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=11.01 E-value=93 Score=25.12 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhHHH
Q 030999 125 SLYLEAVAILPQLV 138 (167)
Q Consensus 125 Si~LEsvAiLPQL~ 138 (167)
+==||.+|++|||.
T Consensus 219 aR~Le~~AviP~LL 232 (240)
T 2fm8_C 219 ARHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34589999999985
No 8
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=10.44 E-value=82 Score=25.11 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.2
Q ss_pred HHHHHhhhhHHH
Q 030999 127 YLEAVAILPQLV 138 (167)
Q Consensus 127 ~LEsvAiLPQL~ 138 (167)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999985
No 9
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=10.37 E-value=69 Score=23.17 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=9.2
Q ss_pred cccccccccch
Q 030999 26 IKSCAGISLKT 36 (167)
Q Consensus 26 ~kS~~GiSlkT 36 (167)
=|||.|++++.
T Consensus 9 IKSc~g~~l~~ 19 (136)
T 2exn_A 9 IAECGATTQSE 19 (136)
T ss_dssp ETTTEEECCGG
T ss_pred cccCCceecCc
Confidence 48999999986
No 10
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=10.23 E-value=92 Score=20.13 Aligned_cols=11 Identities=9% Similarity=0.293 Sum_probs=10.0
Q ss_pred HHHHHHHHHHh
Q 030999 122 WTFSLYLEAVA 132 (167)
Q Consensus 122 WtfSi~LEsvA 132 (167)
|++|.++|+++
T Consensus 27 ~~vg~~le~~g 37 (59)
T 2k37_A 27 ETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHTGGGT
T ss_pred HHHHHHHHHHH
Confidence 88999999986
Done!