Query 030999
Match_columns 167
No_of_seqs 104 out of 347
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 12:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030999.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030999hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 47.4 28 0.0021 22.1 6.2 24 92-115 58-81 (90)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 35.0 24 0.0017 22.7 4.3 18 97-114 73-90 (100)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 34.2 30 0.0022 22.6 4.7 18 97-114 79-96 (107)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 32.6 59 0.0043 21.0 7.4 32 115-146 74-106 (107)
5 d2exna1 b.165.1.1 (A:1-128) Hy 11.8 29 0.0021 23.3 0.5 13 24-36 7-19 (128)
6 d2fm9a1 a.257.1.1 (A:49-263) C 10.4 39 0.0028 25.1 0.9 12 127-138 195-206 (215)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 9.0 23 0.0017 22.5 -0.8 15 99-113 66-80 (91)
8 d1gjsa_ a.8.1.2 (A:) IgG bindi 6.1 53 0.0039 20.0 -0.1 20 21-40 42-62 (65)
9 d1dq3a3 d.95.2.2 (A:129-226) P 5.6 1.2E+02 0.0089 19.3 1.5 13 145-157 80-92 (98)
10 d1ekra_ d.58.21.1 (A:) Molybde 5.1 1.1E+02 0.0078 21.3 1.1 21 142-162 98-119 (146)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=47.35 E-value=28 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=14.8
Q ss_pred cccchhHHHHHHHHHHHHhhcCCc
Q 030999 92 QDTFRHWFIVLPCLVLALLINERF 115 (167)
Q Consensus 92 ~D~f~~~~li~p~~vLa~~~~~~~ 115 (167)
+...-..|-++|+++|..+.-|+.
T Consensus 58 ~~~lEiiWTiiP~lILi~ia~PSl 81 (90)
T d1v54b2 58 AQEVETIWTILPAIILILIALPSL 81 (90)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Confidence 334444566788877777666553
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=34.96 E-value=24 Score=22.68 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhhcCC
Q 030999 97 HWFIVLPCLVLALLINER 114 (167)
Q Consensus 97 ~~~li~p~~vLa~~~~~~ 114 (167)
..+-++|++++..+.-|+
T Consensus 73 iiWTviP~lILi~l~~pS 90 (100)
T d3dtub2 73 IAWTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346678888777665544
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=34.17 E-value=30 Score=22.57 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHhhcCC
Q 030999 97 HWFIVLPCLVLALLINER 114 (167)
Q Consensus 97 ~~~li~p~~vLa~~~~~~ 114 (167)
..|-++|+++|..+.-|+
T Consensus 79 i~WTviP~lIL~~laipS 96 (107)
T d3ehbb2 79 VIWTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335567776666654444
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=32.59 E-value=59 Score=20.99 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=20.4
Q ss_pred cchhhHHHHH-HHHHHHHhhhhHHHHHhhcCCc
Q 030999 115 FTFKEVMWTF-SLYLEAVAILPQLVLLQRTRNI 146 (167)
Q Consensus 115 ~~~~ei~Wtf-Si~LEsvAiLPQL~mlqk~~~v 146 (167)
....|+.||. -..+-.+--.|-+..++..+|+
T Consensus 74 n~~lEi~WTviP~lIL~~laipSl~~Ly~mde~ 106 (107)
T d3ehbb2 74 NTPIEVIWTLVPVLILVAIGAFSLPILFRSQEM 106 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3479999993 3333333347888777776554
No 5
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=11.76 E-value=29 Score=23.26 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.0
Q ss_pred hhcccccccccch
Q 030999 24 HTIKSCAGISLKT 36 (167)
Q Consensus 24 ~~~kS~~GiSlkT 36 (167)
+-=|||.|+|+..
T Consensus 7 ~PIKsc~g~~~~~ 19 (128)
T d2exna1 7 QPIAECGATTQSE 19 (128)
T ss_dssp EEETTTEEECCGG
T ss_pred ecccccCCccccc
Confidence 4458999999864
No 6
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.40 E-value=39 Score=25.14 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.2
Q ss_pred HHHHHhhhhHHH
Q 030999 127 YLEAVAILPQLV 138 (167)
Q Consensus 127 ~LEsvAiLPQL~ 138 (167)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999985
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.98 E-value=23 Score=22.53 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhcC
Q 030999 99 FIVLPCLVLALLINE 113 (167)
Q Consensus 99 ~li~p~~vLa~~~~~ 113 (167)
+-++|.+++..+.-|
T Consensus 66 WtiIP~iil~~iav~ 80 (91)
T d1fftb2 66 VWTVPILIIIFLAVL 80 (91)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456888877766544
No 8
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=6.10 E-value=53 Score=19.97 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=15.6
Q ss_pred HHHhhccccccc-ccchhHHH
Q 030999 21 LKIHTIKSCAGI-SLKTQELY 40 (167)
Q Consensus 21 ~ki~~~kS~~Gi-SlkTQ~ly 40 (167)
-.|.+.|++.|+ ++|-|++=
T Consensus 42 nlIN~AKTVEGV~aLk~eIl~ 62 (65)
T d1gjsa_ 42 NLINNAKTVEGVKALIDEILA 62 (65)
T ss_dssp HHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHh
Confidence 457888999998 78887763
No 9
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=5.58 E-value=1.2e+02 Score=19.32 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.3
Q ss_pred CcchhHHHHHHHH
Q 030999 145 NIDNLTGQYVFLL 157 (167)
Q Consensus 145 ~ve~~tshYv~~L 157 (167)
++.++||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 5678999998655
No 10
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=5.12 E-value=1.1e+02 Score=21.32 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.7
Q ss_pred hcC-CcchhHHHHHHHHHHHhh
Q 030999 142 RTR-NIDNLTGQYVFLLGAAHT 162 (167)
Q Consensus 142 k~~-~ve~~tshYv~~Lg~yR~ 162 (167)
||| |-|.+|+--+++|-+|=-
T Consensus 98 kTGVEMEALtavsva~LTiYDM 119 (146)
T d1ekra_ 98 KTGVEMEALTAASVAALTIYDM 119 (146)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCceehHHHHHHHHHHHHHHHH
Confidence 566 899999999999998843
Done!