Query 031001
Match_columns 167
No_of_seqs 114 out of 1075
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 1.6E-52 3.4E-57 331.4 14.6 147 1-157 49-195 (200)
2 PRK12552 ATP-dependent Clp pro 100.0 1.6E-51 3.5E-56 331.5 15.5 155 1-156 62-216 (222)
3 PRK14513 ATP-dependent Clp pro 100.0 1.2E-49 2.5E-54 317.2 16.4 146 1-156 49-194 (201)
4 KOG0840 ATP-dependent Clp prot 100.0 5.3E-50 1.1E-54 324.1 12.2 144 1-154 114-257 (275)
5 PRK14514 ATP-dependent Clp pro 100.0 6.8E-49 1.5E-53 316.5 15.6 145 1-155 76-220 (221)
6 PRK12551 ATP-dependent Clp pro 100.0 2.5E-48 5.5E-53 308.7 15.8 145 1-155 47-191 (196)
7 CHL00028 clpP ATP-dependent Cl 100.0 2.6E-48 5.6E-53 309.6 15.6 146 1-156 52-198 (200)
8 PRK14512 ATP-dependent Clp pro 100.0 1.4E-45 3E-50 293.3 16.6 152 1-162 45-196 (197)
9 TIGR00493 clpP ATP-dependent C 100.0 1.8E-44 3.9E-49 285.7 15.9 143 1-153 48-190 (191)
10 PRK00277 clpP ATP-dependent Cl 100.0 6.3E-43 1.4E-47 278.6 15.8 147 1-157 53-199 (200)
11 PRK12553 ATP-dependent Clp pro 100.0 4.1E-42 8.8E-47 275.3 14.8 148 2-158 58-206 (207)
12 cd07013 S14_ClpP Caseinolytic 100.0 5.4E-42 1.2E-46 265.0 14.9 140 2-151 23-162 (162)
13 PF00574 CLP_protease: Clp pro 100.0 1.4E-42 3.1E-47 271.5 11.2 144 2-155 39-182 (182)
14 cd07017 S14_ClpP_2 Caseinolyti 100.0 3.6E-41 7.8E-46 262.2 13.6 140 2-151 32-171 (171)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 4.3E-32 9.2E-37 208.3 15.2 132 8-151 29-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 4.6E-31 1E-35 205.9 15.3 138 6-161 27-172 (172)
17 cd00394 Clp_protease_like Case 99.9 4.6E-27 9.9E-32 179.9 14.3 136 4-151 24-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.9 1.4E-25 3E-30 176.8 15.5 147 7-166 28-177 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 2.2E-24 4.8E-29 169.2 14.9 138 7-161 28-178 (178)
20 cd07014 S49_SppA Signal peptid 99.8 3E-17 6.5E-22 127.9 14.2 135 7-161 38-175 (177)
21 TIGR00706 SppA_dom signal pept 99.7 1.6E-16 3.5E-21 127.0 14.4 136 7-154 29-195 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.7 5.7E-16 1.2E-20 123.6 13.0 139 5-156 31-202 (208)
23 cd07022 S49_Sppa_36K_type Sign 99.6 5.1E-15 1.1E-19 118.8 14.3 135 6-153 40-205 (214)
24 TIGR00705 SppA_67K signal pept 99.6 9E-15 1.9E-19 132.8 15.6 135 8-154 346-511 (584)
25 COG0616 SppA Periplasmic serin 99.6 5.9E-15 1.3E-19 125.1 12.7 144 5-160 94-268 (317)
26 cd07019 S49_SppA_1 Signal pept 99.6 3E-14 6.4E-19 114.2 15.4 138 6-155 36-204 (211)
27 cd07018 S49_SppA_67K_type Sign 99.5 5.2E-13 1.1E-17 107.7 13.9 140 7-160 45-218 (222)
28 COG1030 NfeD Membrane-bound se 99.5 2.4E-13 5.2E-18 118.4 11.6 140 9-165 57-199 (436)
29 PRK10949 protease 4; Provision 99.4 7E-12 1.5E-16 114.6 15.3 139 6-156 362-531 (618)
30 PRK11778 putative inner membra 99.4 9.1E-12 2E-16 106.1 14.7 138 7-158 121-290 (330)
31 PF01972 SDH_sah: Serine dehyd 99.4 1.2E-11 2.7E-16 102.3 13.5 131 5-148 86-242 (285)
32 PF01343 Peptidase_S49: Peptid 99.1 9.7E-10 2.1E-14 84.0 10.7 114 42-159 2-144 (154)
33 TIGR00705 SppA_67K signal pept 98.8 1.2E-07 2.6E-12 86.6 13.2 138 6-155 91-270 (584)
34 cd06558 crotonase-like Crotona 98.7 2.8E-07 6.2E-12 71.7 10.5 105 33-160 80-186 (195)
35 PRK10949 protease 4; Provision 98.6 1E-06 2.2E-11 81.0 12.3 138 6-155 110-289 (618)
36 PRK05869 enoyl-CoA hydratase; 98.4 4E-06 8.6E-11 67.7 11.8 104 36-160 89-192 (222)
37 COG3904 Predicted periplasmic 98.4 1.4E-06 3.1E-11 69.8 8.7 121 14-150 109-236 (245)
38 PRK08258 enoyl-CoA hydratase; 98.4 4.4E-06 9.5E-11 69.4 11.8 99 37-154 104-202 (277)
39 PRK06213 enoyl-CoA hydratase; 98.3 8.1E-06 1.7E-10 65.9 10.9 104 35-159 80-184 (229)
40 PRK06142 enoyl-CoA hydratase; 98.3 6E-06 1.3E-10 68.3 10.0 103 37-159 100-202 (272)
41 PF00378 ECH: Enoyl-CoA hydrat 98.3 7.4E-06 1.6E-10 66.5 10.3 104 33-156 77-180 (245)
42 PRK06210 enoyl-CoA hydratase; 98.3 5.6E-06 1.2E-10 68.5 9.5 98 37-154 99-196 (272)
43 PRK09674 enoyl-CoA hydratase-i 98.3 1.1E-05 2.4E-10 66.2 10.8 100 36-155 82-181 (255)
44 PRK06495 enoyl-CoA hydratase; 98.3 8.1E-06 1.8E-10 67.1 9.9 95 37-154 88-182 (257)
45 PRK03580 carnitinyl-CoA dehydr 98.3 1.5E-05 3.2E-10 65.7 11.2 99 36-154 84-182 (261)
46 PRK08150 enoyl-CoA hydratase; 98.2 1.6E-05 3.5E-10 65.4 11.2 100 36-155 82-181 (255)
47 PRK07110 polyketide biosynthes 98.2 1.3E-05 2.9E-10 65.6 10.7 104 36-160 84-187 (249)
48 PRK06688 enoyl-CoA hydratase; 98.2 1.1E-05 2.4E-10 66.1 10.2 100 35-154 85-184 (259)
49 PLN02664 enoyl-CoA hydratase/d 98.2 1.3E-05 2.8E-10 66.6 10.4 102 37-158 102-203 (275)
50 COG1024 CaiD Enoyl-CoA hydrata 98.2 1.2E-05 2.6E-10 66.0 10.1 104 37-160 89-192 (257)
51 PRK06144 enoyl-CoA hydratase; 98.2 1.1E-05 2.5E-10 66.4 9.7 103 37-159 93-195 (262)
52 PRK05981 enoyl-CoA hydratase; 98.2 9.8E-06 2.1E-10 66.8 9.3 99 37-155 94-192 (266)
53 PLN02888 enoyl-CoA hydratase 98.2 2.3E-05 4.9E-10 64.8 11.3 99 37-155 90-188 (265)
54 PRK09245 enoyl-CoA hydratase; 98.2 1E-05 2.2E-10 66.7 9.2 99 37-155 94-192 (266)
55 PRK06190 enoyl-CoA hydratase; 98.2 2.9E-05 6.3E-10 64.0 11.8 99 36-154 84-182 (258)
56 PRK06143 enoyl-CoA hydratase; 98.2 2.1E-05 4.6E-10 64.7 11.0 98 36-154 90-187 (256)
57 PRK07511 enoyl-CoA hydratase; 98.2 1.9E-05 4.2E-10 64.8 10.7 100 36-155 88-187 (260)
58 PRK08139 enoyl-CoA hydratase; 98.2 2.6E-05 5.6E-10 64.5 11.4 98 37-155 95-192 (266)
59 PRK06127 enoyl-CoA hydratase; 98.2 1.7E-05 3.7E-10 65.6 10.3 102 37-159 97-198 (269)
60 PRK11423 methylmalonyl-CoA dec 98.2 2E-05 4.4E-10 64.9 10.6 98 37-154 87-184 (261)
61 PRK05980 enoyl-CoA hydratase; 98.2 1.8E-05 3.8E-10 65.1 10.2 99 37-155 91-189 (260)
62 TIGR02280 PaaB1 phenylacetate 98.2 1.2E-05 2.7E-10 65.9 9.2 98 38-155 85-182 (256)
63 PRK06494 enoyl-CoA hydratase; 98.2 2.7E-05 5.9E-10 64.0 11.3 93 42-154 90-182 (259)
64 PRK06023 enoyl-CoA hydratase; 98.2 1.5E-05 3.2E-10 65.3 9.3 99 36-154 87-185 (251)
65 PRK05862 enoyl-CoA hydratase; 98.2 2.3E-05 4.9E-10 64.4 10.5 98 37-154 85-182 (257)
66 PRK09076 enoyl-CoA hydratase; 98.2 3E-05 6.5E-10 63.7 11.1 99 37-155 86-184 (258)
67 PRK07396 dihydroxynaphthoic ac 98.2 2.3E-05 5E-10 65.0 10.5 102 37-159 98-199 (273)
68 PRK07112 polyketide biosynthes 98.1 1.8E-05 4E-10 64.9 9.6 100 37-157 87-186 (255)
69 PRK07938 enoyl-CoA hydratase; 98.1 2E-05 4.3E-10 64.6 9.7 95 37-154 85-179 (249)
70 PRK08138 enoyl-CoA hydratase; 98.1 3.2E-05 6.9E-10 63.7 10.9 99 37-155 89-187 (261)
71 PRK08260 enoyl-CoA hydratase; 98.1 2.4E-05 5.2E-10 65.6 10.3 98 37-154 104-201 (296)
72 PLN02921 naphthoate synthase 98.1 3.1E-05 6.7E-10 66.2 11.1 97 38-154 153-249 (327)
73 PRK09120 p-hydroxycinnamoyl Co 98.1 3E-05 6.4E-10 64.5 10.5 98 37-154 95-192 (275)
74 PLN03214 probable enoyl-CoA hy 98.1 2.2E-05 4.9E-10 65.4 9.8 101 38-159 99-200 (278)
75 PRK06563 enoyl-CoA hydratase; 98.1 2.5E-05 5.5E-10 64.0 10.0 95 41-155 87-181 (255)
76 PRK05995 enoyl-CoA hydratase; 98.1 2.7E-05 5.9E-10 64.0 10.1 97 37-154 90-186 (262)
77 PRK07657 enoyl-CoA hydratase; 98.1 2.9E-05 6.4E-10 63.8 10.3 100 36-155 87-186 (260)
78 PRK05809 3-hydroxybutyryl-CoA 98.1 2.5E-05 5.4E-10 64.2 9.7 99 36-154 87-185 (260)
79 TIGR01929 menB naphthoate synt 98.1 2.7E-05 5.9E-10 64.1 9.7 98 37-154 88-185 (259)
80 PLN02267 enoyl-CoA hydratase/i 98.1 4.3E-05 9.2E-10 62.4 10.6 103 37-160 85-190 (239)
81 PRK07509 enoyl-CoA hydratase; 98.1 1.9E-05 4.1E-10 64.9 8.6 97 38-154 94-190 (262)
82 PRK12319 acetyl-CoA carboxylas 98.1 2.1E-05 4.6E-10 65.1 8.9 117 9-155 98-215 (256)
83 PRK07658 enoyl-CoA hydratase; 98.1 5E-05 1.1E-09 62.2 11.1 99 36-154 84-182 (257)
84 PLN03230 acetyl-coenzyme A car 98.1 1.8E-05 3.8E-10 69.5 8.6 114 9-155 221-338 (431)
85 PRK07468 enoyl-CoA hydratase; 98.1 3.4E-05 7.3E-10 63.6 9.9 97 38-155 92-188 (262)
86 PRK08140 enoyl-CoA hydratase; 98.1 2.7E-05 5.8E-10 64.0 9.3 98 38-155 91-188 (262)
87 TIGR00513 accA acetyl-CoA carb 98.1 1.1E-05 2.4E-10 68.6 7.1 117 9-155 151-268 (316)
88 TIGR03210 badI 2-ketocyclohexa 98.1 5E-05 1.1E-09 62.4 10.5 98 37-154 85-182 (256)
89 PRK08290 enoyl-CoA hydratase; 98.1 3.1E-05 6.8E-10 64.8 9.4 96 37-154 109-204 (288)
90 PRK07327 enoyl-CoA hydratase; 98.0 5.2E-05 1.1E-09 62.7 10.5 102 37-159 97-198 (268)
91 PRK05864 enoyl-CoA hydratase; 98.0 3.7E-05 8E-10 63.8 9.5 100 37-155 100-199 (276)
92 PRK05724 acetyl-CoA carboxylas 98.0 2E-05 4.2E-10 67.2 7.9 117 9-155 151-268 (319)
93 PRK07260 enoyl-CoA hydratase; 98.0 3.8E-05 8.3E-10 63.0 9.4 98 37-154 89-186 (255)
94 PRK07854 enoyl-CoA hydratase; 98.0 0.00013 2.8E-09 59.5 12.2 98 36-153 76-173 (243)
95 PRK07659 enoyl-CoA hydratase; 98.0 3.2E-05 6.9E-10 63.7 8.7 93 38-152 90-184 (260)
96 CHL00198 accA acetyl-CoA carbo 98.0 3.4E-05 7.4E-10 65.8 8.7 114 9-155 154-271 (322)
97 TIGR03134 malonate_gamma malon 98.0 4.2E-05 9E-10 62.8 8.9 121 8-156 65-191 (238)
98 PRK06072 enoyl-CoA hydratase; 98.0 7.2E-05 1.6E-09 61.2 10.2 94 37-151 80-173 (248)
99 PRK12478 enoyl-CoA hydratase; 98.0 3.6E-05 7.9E-10 64.8 8.7 94 38-154 104-197 (298)
100 PRK08788 enoyl-CoA hydratase; 98.0 8.4E-05 1.8E-09 62.4 10.7 92 44-155 119-210 (287)
101 PRK05870 enoyl-CoA hydratase; 98.0 2E-05 4.3E-10 64.5 6.6 96 37-152 86-181 (249)
102 PRK08272 enoyl-CoA hydratase; 98.0 8.1E-05 1.8E-09 62.6 10.4 95 37-154 118-212 (302)
103 TIGR03189 dienoyl_CoA_hyt cycl 98.0 9.6E-05 2.1E-09 60.7 10.5 98 37-155 80-177 (251)
104 PLN02600 enoyl-CoA hydratase 98.0 0.00011 2.4E-09 60.2 10.7 99 37-155 79-177 (251)
105 PRK08321 naphthoate synthase; 97.9 0.00013 2.9E-09 61.4 10.9 97 38-154 127-224 (302)
106 TIGR03200 dearomat_oah 6-oxocy 97.9 9.5E-05 2.1E-09 64.0 10.1 100 36-156 114-214 (360)
107 PRK05674 gamma-carboxygeranoyl 97.9 8.2E-05 1.8E-09 61.5 9.4 101 37-159 92-192 (265)
108 PRK07799 enoyl-CoA hydratase; 97.9 7.5E-05 1.6E-09 61.5 8.8 94 42-155 96-189 (263)
109 KOG1680 Enoyl-CoA hydratase [L 97.9 4.9E-05 1.1E-09 63.4 7.2 101 36-158 117-219 (290)
110 PRK07827 enoyl-CoA hydratase; 97.8 0.00012 2.5E-09 60.2 8.8 97 37-154 92-188 (260)
111 PLN03229 acetyl-coenzyme A car 97.8 8E-05 1.7E-09 69.2 8.4 117 9-155 242-359 (762)
112 PRK08184 benzoyl-CoA-dihydrodi 97.8 0.00014 3.1E-09 66.2 9.4 105 38-160 115-221 (550)
113 PRK08259 enoyl-CoA hydratase; 97.8 0.00012 2.6E-09 60.2 8.1 92 44-155 91-182 (254)
114 PRK08252 enoyl-CoA hydratase; 97.7 0.00038 8.2E-09 57.1 9.5 93 43-155 88-180 (254)
115 PRK11730 fadB multifunctional 97.6 0.00059 1.3E-08 63.9 11.1 99 37-155 93-191 (715)
116 PRK11154 fadJ multifunctional 97.6 0.00041 8.9E-09 64.9 10.0 99 37-155 92-192 (708)
117 TIGR02440 FadJ fatty oxidation 97.6 0.00066 1.4E-08 63.4 11.2 100 36-155 86-187 (699)
118 PRK05617 3-hydroxyisobutyryl-C 97.6 0.00024 5.3E-09 60.9 7.2 96 37-155 91-188 (342)
119 TIGR02437 FadB fatty oxidation 97.6 0.00087 1.9E-08 62.8 11.4 100 35-154 91-190 (714)
120 PLN02874 3-hydroxyisobutyryl-C 97.5 0.00071 1.5E-08 58.9 9.7 95 39-154 98-192 (379)
121 TIGR03222 benzo_boxC benzoyl-C 97.5 0.00087 1.9E-08 61.1 9.8 101 38-155 111-213 (546)
122 PLN02157 3-hydroxyisobutyryl-C 97.4 0.0011 2.4E-08 58.3 9.5 96 39-155 126-221 (401)
123 TIGR03222 benzo_boxC benzoyl-C 97.4 0.00088 1.9E-08 61.0 9.1 98 38-155 357-466 (546)
124 PLN02820 3-methylcrotonyl-CoA 97.4 0.00047 1E-08 63.1 6.8 138 9-155 401-541 (569)
125 TIGR02441 fa_ox_alpha_mit fatt 97.3 0.0035 7.7E-08 59.0 12.3 99 36-154 98-198 (737)
126 KOG1681 Enoyl-CoA isomerase [L 97.3 0.00019 4E-09 58.8 3.0 109 34-161 114-222 (292)
127 PLN02988 3-hydroxyisobutyryl-C 97.3 0.0033 7.1E-08 54.9 10.7 96 39-155 98-193 (381)
128 TIGR01117 mmdA methylmalonyl-C 97.2 0.00088 1.9E-08 60.6 6.8 130 9-155 350-482 (512)
129 COG0825 AccA Acetyl-CoA carbox 97.1 0.0017 3.7E-08 54.6 7.2 114 9-155 150-267 (317)
130 PLN02851 3-hydroxyisobutyryl-C 97.1 0.0057 1.2E-07 53.9 10.5 96 39-155 131-226 (407)
131 PRK08184 benzoyl-CoA-dihydrodi 97.0 0.0031 6.8E-08 57.5 8.3 98 38-155 361-470 (550)
132 PF01039 Carboxyl_trans: Carbo 96.7 0.0043 9.4E-08 55.8 6.9 131 9-155 329-465 (493)
133 PRK05654 acetyl-CoA carboxylas 95.7 0.13 2.7E-06 43.6 9.8 68 9-86 156-233 (292)
134 TIGR00515 accD acetyl-CoA carb 95.4 0.14 2.9E-06 43.3 9.1 101 9-155 155-266 (285)
135 PF06833 MdcE: Malonate decarb 95.2 0.15 3.3E-06 41.8 8.6 70 6-84 61-140 (234)
136 KOG1682 Enoyl-CoA isomerase [L 94.7 0.039 8.4E-07 44.8 3.8 98 37-155 116-213 (287)
137 COG4799 Acetyl-CoA carboxylase 94.2 0.092 2E-06 47.7 5.4 60 9-68 359-419 (526)
138 COG0447 MenB Dihydroxynaphthoi 93.6 0.1 2.2E-06 42.8 4.0 97 36-154 106-204 (282)
139 TIGR03133 malonate_beta malona 92.7 0.47 1E-05 39.9 6.8 68 10-88 100-178 (274)
140 PRK07189 malonate decarboxylas 92.2 0.46 1E-05 40.4 6.3 67 10-87 109-186 (301)
141 KOG1679 Enoyl-CoA hydratase [L 91.2 0.25 5.4E-06 40.5 3.4 100 33-155 111-213 (291)
142 KOG0016 Enoyl-CoA hydratase/is 89.5 0.4 8.7E-06 39.9 3.4 123 12-154 54-195 (266)
143 PLN02820 3-methylcrotonyl-CoA 74.0 13 0.00029 34.3 7.2 76 9-86 164-244 (569)
144 TIGR01117 mmdA methylmalonyl-C 68.4 15 0.00032 33.5 6.1 68 9-87 117-194 (512)
145 CHL00174 accD acetyl-CoA carbo 67.4 18 0.00039 30.8 6.0 68 9-87 168-247 (296)
146 PF01039 Carboxyl_trans: Carbo 63.6 12 0.00027 33.7 4.7 67 10-87 93-171 (493)
147 PF01381 HTH_3: Helix-turn-hel 58.4 22 0.00049 21.3 3.9 33 113-145 12-44 (55)
148 PF06972 DUF1296: Protein of u 58.3 17 0.00036 23.6 3.3 49 111-163 7-56 (60)
149 TIGR03070 couple_hipB transcri 56.1 31 0.00068 20.5 4.3 32 113-144 18-49 (58)
150 PF00681 Plectin: Plectin repe 49.1 12 0.00026 22.4 1.4 19 132-150 17-35 (45)
151 PRK09726 antitoxin HipB; Provi 46.5 58 0.0012 22.0 4.8 48 95-142 10-57 (88)
152 TIGR01729 taurine_ABC_bnd taur 45.4 98 0.0021 25.2 6.9 30 113-142 227-256 (300)
153 cd01452 VWA_26S_proteasome_sub 45.0 78 0.0017 24.9 5.9 45 5-57 103-147 (187)
154 TIGR02675 tape_meas_nterm tape 42.3 62 0.0013 21.5 4.3 29 111-140 45-73 (75)
155 PF14117 DUF4287: Domain of un 41.8 42 0.00091 21.8 3.3 32 112-143 5-37 (61)
156 smart00250 PLEC Plectin repeat 40.1 18 0.0004 20.7 1.2 19 133-151 18-36 (38)
157 TIGR03427 ABC_peri_uca ABC tra 38.2 63 0.0014 27.5 4.7 43 110-152 226-269 (328)
158 PLN00125 Succinyl-CoA ligase [ 37.9 61 0.0013 27.6 4.5 47 2-58 199-245 (300)
159 PF12844 HTH_19: Helix-turn-he 34.5 1.1E+02 0.0024 18.8 4.4 41 104-144 6-46 (64)
160 PRK02866 cyanate hydratase; Va 33.5 85 0.0019 24.0 4.3 33 113-145 21-53 (147)
161 KOG1552 Predicted alpha/beta h 33.3 1.1E+02 0.0023 25.7 5.1 60 18-87 102-162 (258)
162 PHA00099 minor capsid protein 32.7 2.2E+02 0.0047 21.5 6.9 52 95-148 60-114 (147)
163 cd06567 Peptidase_S41 C-termin 32.2 1.6E+02 0.0035 22.9 6.0 51 9-68 89-166 (224)
164 TIGR02607 antidote_HigA addict 31.9 96 0.0021 19.8 3.9 32 113-144 21-52 (78)
165 PHA01976 helix-turn-helix prot 30.8 1.2E+02 0.0026 18.8 4.1 32 112-143 17-48 (67)
166 PF13443 HTH_26: Cro/C1-type H 30.4 1.3E+02 0.0028 18.4 4.2 30 113-142 13-43 (63)
167 COG4981 Enoyl reductase domain 28.3 57 0.0012 30.4 3.0 146 5-165 172-335 (717)
168 PF14048 MBD_C: C-terminal dom 28.2 1E+02 0.0022 21.7 3.7 40 77-116 57-96 (96)
169 TIGR00225 prc C-terminal pepti 27.9 1.9E+02 0.0042 24.4 6.1 52 9-69 181-257 (334)
170 PF13607 Succ_CoA_lig: Succiny 27.8 87 0.0019 23.3 3.5 42 2-56 48-91 (138)
171 PF13812 PPR_3: Pentatricopept 27.8 78 0.0017 16.4 2.5 17 30-46 15-31 (34)
172 cd02791 MopB_CT_Nitrate-R-NapA 27.1 55 0.0012 22.9 2.3 16 134-149 36-51 (122)
173 PTZ00187 succinyl-CoA syntheta 26.7 1.2E+02 0.0025 26.1 4.5 47 2-58 218-264 (317)
174 TIGR00673 cynS cyanate hydrata 26.2 1.1E+02 0.0024 23.4 3.8 33 113-145 24-56 (150)
175 PF01466 Skp1: Skp1 family, di 26.2 1.8E+02 0.004 19.1 4.6 35 109-143 32-67 (78)
176 PRK11186 carboxy-terminal prot 25.4 1.9E+02 0.0041 27.5 5.9 51 9-68 383-459 (667)
177 PF08004 DUF1699: Protein of u 24.0 48 0.001 24.8 1.4 50 89-140 74-123 (131)
178 COG0074 SucD Succinyl-CoA synt 23.6 2.2E+02 0.0048 24.3 5.4 56 5-80 196-252 (293)
179 cd02794 MopB_CT_DmsA-EC The Mo 23.0 81 0.0018 22.3 2.5 16 134-149 31-46 (121)
180 KOG0540 3-Methylcrotonyl-CoA c 22.9 3.5E+02 0.0076 24.8 6.8 73 9-83 384-460 (536)
181 COG4799 Acetyl-CoA carboxylase 22.8 1.6E+02 0.0035 27.1 4.8 75 9-86 126-202 (526)
182 cd02787 MopB_CT_ydeP The MopB_ 22.5 49 0.0011 23.1 1.2 17 134-150 32-48 (112)
183 PF01568 Molydop_binding: Moly 22.1 47 0.001 22.8 1.0 16 134-149 31-46 (110)
184 cd02792 MopB_CT_Formate-Dh-Na- 21.7 79 0.0017 22.1 2.2 15 135-149 37-51 (122)
185 PF13171 DUF4004: Protein of u 21.1 2.2E+02 0.0049 22.8 4.8 57 90-151 39-98 (199)
186 cd02786 MopB_CT_3 The MopB_CT_ 20.9 57 0.0012 22.7 1.3 16 134-149 32-47 (116)
187 PF14574 DUF4445: Domain of un 20.9 1.4E+02 0.003 26.6 3.9 50 103-152 301-356 (412)
188 TIGR02684 dnstrm_HI1420 probab 20.9 2.9E+02 0.0063 18.9 5.6 45 93-139 28-72 (89)
189 PF09675 Chlamy_scaf: Chlamydi 20.4 3.5E+02 0.0076 19.7 6.9 58 91-150 23-86 (114)
190 cd07563 Peptidase_S41_IRBP Int 20.4 2.3E+02 0.0049 22.7 4.9 22 47-68 158-179 (250)
191 PF04539 Sigma70_r3: Sigma-70 20.4 2.5E+02 0.0053 17.9 4.7 19 114-132 24-42 (78)
192 COG1647 Esterase/lipase [Gener 20.4 21 0.00045 29.5 -1.2 59 78-144 16-77 (243)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-52 Score=331.40 Aligned_cols=147 Identities=37% Similarity=0.565 Sum_probs=143.9
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
|||+.++|.++|+||||||| |+|++|++|||+||++++||+|+|.|+|||||++|+++|++++|+++|||+
T Consensus 49 l~Lea~~~~k~I~lyINSpG---------G~V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsr 119 (200)
T COG0740 49 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNAR 119 (200)
T ss_pred HHHHhcCCCCCeEEEEeCCC---------cccchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCce
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (167)
+|||||+ +++.|+++|++++++++.++++.+.++|+++||++++++.++|+||+||||+||++|||||+|++..++
T Consensus 120 imIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 120 IMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred EEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 9999999 899999999999999999999999999999999999999999999999999999999999999988754
No 2
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=1.6e-51 Score=331.48 Aligned_cols=155 Identities=40% Similarity=0.679 Sum_probs=150.6
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
|||+.+++.++|+||||||||++.+++.+|.+++|++|||+|++++++|+|+|+|+|+|+|++|+++|++++|+++|||+
T Consensus 62 l~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~ 141 (222)
T PRK12552 62 LYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHAT 141 (222)
T ss_pred HHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (167)
+|||||+ ++..|++.|+++++++|.++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++..
T Consensus 142 iMIHqP~-~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 142 IVLHQPR-SGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred EEeccCC-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 9999998 77899999999999999999999999999999999999999999999999999999999999998754
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.2e-49 Score=317.20 Aligned_cols=146 Identities=31% Similarity=0.481 Sum_probs=142.0
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
|||+++++.++|+||||||| |+|++|++|||+|+++++||+|+|+|+|+|||++|+++|++++|+++|||+
T Consensus 49 l~L~~~~~~~~I~l~INSpG---------G~v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~ 119 (201)
T PRK14513 49 LLLDSQNPEQEIQMYINCPG---------GEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSR 119 (201)
T ss_pred HHhhccCCCCCEEEEEECCC---------CchhhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (167)
+|||||+ ++..|++.|+++++++|++.++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.+
T Consensus 120 iMIHqp~-~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 120 IMIHQGS-AGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred EEEecCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 9999998 67899999999999999999999999999999999999999999999999999999999999998754
No 4
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-50 Score=324.09 Aligned_cols=144 Identities=47% Similarity=0.678 Sum_probs=141.9
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
|||+.+|++|||++|||||| |++++|+||||+|+++++||.|+|+|+|+|+|++||++|.|++|+++|||+
T Consensus 114 L~Ld~ed~~K~I~lyINSPG---------G~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsr 184 (275)
T KOG0840|consen 114 LYLDSEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSR 184 (275)
T ss_pred HHhhccCCCCCeEEEEeCCC---------CccchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCce
Confidence 69999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+|||||. +++.|++.|+.++++|+.+.++.+.++|+++||+|.|+|.++|+||+||+|+||+||||||+|++.
T Consensus 185 iMIhQP~-gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 185 IMIHQPS-GGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred eEEeccC-CCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 9999999 789999999999999999999999999999999999999999999999999999999999999985
No 5
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=6.8e-49 Score=316.51 Aligned_cols=145 Identities=31% Similarity=0.513 Sum_probs=141.4
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
|||+.++++++|+||||||| |+|++|++|||+|+++++||+|+|.|+|||||++|+++|++++|+++|||+
T Consensus 76 l~L~~~~~~~~I~lyINSpG---------Gsv~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~ 146 (221)
T PRK14514 76 LYLDSVDPGKDISIYINSPG---------GSVYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSR 146 (221)
T ss_pred HHHhccCCCCCEEEEEECCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+|+|||+ ++..|+++|++++++++.++++.+.++|+++||++.++|.++|++|+||||+||++|||||+|++.+
T Consensus 147 iMiHqP~-~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 147 VMIHQPL-GGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred EEeccCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 9999998 7789999999999999999999999999999999999999999999999999999999999999754
No 6
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.5e-48 Score=308.68 Aligned_cols=145 Identities=37% Similarity=0.553 Sum_probs=141.4
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
+||+.+++.++|+||||||| |+|++|++|||+|+++++||+|+|.|+|+|+|++|+++|++++|+++|||+
T Consensus 47 l~l~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~ 117 (196)
T PRK12551 47 LFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSR 117 (196)
T ss_pred HHhhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCE
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+|+|||+ ++..|+++|+++++++|+++++.+.++|+++||++.++|.++|++|+||||+||++|||||+|+++.
T Consensus 118 iMIHqP~-~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 118 IMIHQPL-GGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred EEEecCC-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 9999998 7789999999999999999999999999999999999999999999999999999999999999864
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.6e-48 Score=309.56 Aligned_cols=146 Identities=29% Similarity=0.478 Sum_probs=141.7
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
|||+.+++.++|+||||||| |++++|++|||+|++++.||+|+|.|+|+|+|++|+++|++++|+++|||+
T Consensus 52 l~L~~~~~~~~I~l~INSpG---------G~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~ 122 (200)
T CHL00028 52 VYLSIEDDTKDLYLFINSPG---------GSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHAR 122 (200)
T ss_pred HHHhccCCCCCEEEEEeCCC---------cchhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCe
Confidence 58999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccC-CcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001 81 TKLYLPVVGR-SSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 81 ~miH~p~~~~-~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (167)
+|+|||+ ++ ..|+++|+++++++|+++++.+.++|+++||++.++|.++|++|+||||+||++|||||+|+++..
T Consensus 123 imiHqp~-~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 123 VMIHQPA-SSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred EEEecCc-cCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence 9999998 55 889999999999999999999999999999999999999999999999999999999999998754
No 8
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=293.34 Aligned_cols=152 Identities=27% Similarity=0.441 Sum_probs=145.4
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
+||+.+++.++|+|+||||| |+|++|++|||+|++++.||+|+|.|.|+|||++|+++|++++|+++|||+
T Consensus 45 ~~l~~~~~~~~I~l~INSpG---------G~v~ag~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~ 115 (197)
T PRK14512 45 LLLEALDSKKPIFVYIDSEG---------GDIDAGFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNAR 115 (197)
T ss_pred HHHHhcCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCc
Confidence 36778788899999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
+|+|||+ +...|++.|++..++++++.++.+.++|+++||++.++++++|++|+||||+||++|||||+|+++..++.+
T Consensus 116 imiHqP~-~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 116 YLLHQPL-SGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred EEEEcCc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence 9999998 778899999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred hh
Q 031001 161 KR 162 (167)
Q Consensus 161 ~~ 162 (167)
..
T Consensus 195 ~~ 196 (197)
T PRK14512 195 FI 196 (197)
T ss_pred hc
Confidence 53
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.8e-44 Score=285.70 Aligned_cols=143 Identities=38% Similarity=0.562 Sum_probs=138.5
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
+||+.+++.++|+|+||||| |++++|++|||+|++++.||+|+|.|+|+|+|++|+++|++++|++.|||+
T Consensus 48 ~~l~~~~~~~~i~l~InSpG---------G~v~~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~ 118 (191)
T TIGR00493 48 LFLEAEDPEKDIYLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSR 118 (191)
T ss_pred HHhhccCCCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCce
Confidence 47888899999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeC
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~ 153 (167)
+|+|||+ ++..|++.|+++.+++++++++.+.++|+++||++.++++++|++|+||||+||++|||||+|++
T Consensus 119 imiH~p~-~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 119 IMIHQPL-GGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred EEEecCc-ccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 9999998 67889999999999999999999999999999999999999999999999999999999999985
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=6.3e-43 Score=278.58 Aligned_cols=147 Identities=39% Similarity=0.587 Sum_probs=141.5
Q ss_pred CCcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 1 MWLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 1 ~~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
+||+.+++.++|+|+||||| |++++|++|||+|++++.||+|+|.|.|+|+|++|+++|++++|++.|||+
T Consensus 53 ~~l~~~~~~~~I~l~InSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~ 123 (200)
T PRK00277 53 LFLEAEDPDKDIYLYINSPG---------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSR 123 (200)
T ss_pred HHhhccCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCce
Confidence 47888888999999999999 999999999999999999999999999999999999999989999999999
Q ss_pred eeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001 81 TKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (167)
Q Consensus 81 ~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (167)
+|+|+|+ +++.|++.|++.+++++.++++.+.++|+++||++++++++++++|+||||+||++|||||+|+++.++
T Consensus 124 imih~p~-~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~~ 199 (200)
T PRK00277 124 IMIHQPL-GGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRKE 199 (200)
T ss_pred EEeccCc-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCCC
Confidence 9999998 778899999999999999999999999999999999999999999999999999999999999988654
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.1e-42 Score=275.25 Aligned_cols=148 Identities=35% Similarity=0.480 Sum_probs=141.0
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (167)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~ 81 (167)
||+.+++.++|+|+||||| |++++|++|||+|++++.||+|+|.|.|+|+|++|+++|++++|++.|||++
T Consensus 58 ~l~~~~~~~~I~l~INSpG---------G~v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~i 128 (207)
T PRK12553 58 VLESIDPDRDITLYINSPG---------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARI 128 (207)
T ss_pred HHHhCCCCCCEEEEEeCCC---------CcHHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchh
Confidence 6778888999999999999 9999999999999999999999999999999999999999989999999999
Q ss_pred eeecccc-cCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHH
Q 031001 82 KLYLPVV-GRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158 (167)
Q Consensus 82 miH~p~~-~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~ 158 (167)
|+|+|+. +...|++.|++.+++++.++++.+.++|+++||++.+++++++++++||||+||++|||||+|+++..++
T Consensus 129 miH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 129 LIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred hhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence 9999985 3468999999999999999999999999999999999999999999999999999999999999887664
No 12
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=5.4e-42 Score=265.00 Aligned_cols=140 Identities=36% Similarity=0.517 Sum_probs=135.7
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (167)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~ 81 (167)
+|+.+++.++|.|+||||| |+++++++||++|+.++.||+|++.|+|+|+|++|+++|++++|+++|++++
T Consensus 23 ~l~~~~~~~~i~l~InSpG---------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~ 93 (162)
T cd07013 23 FLGAVNPEKDIYLYINSPG---------GDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMM 93 (162)
T ss_pred HHhcCCCCCCEEEEEECCC---------CcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEE
Confidence 6778888899999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (167)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I 151 (167)
|+|+|+ +...|++.|++++++++++.++.+.++|+++||+++++|+++|++++||+|+||++|||||+|
T Consensus 94 ~ih~~~-~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 94 MIHQPW-GGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred EEccCc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 999998 778899999999999999999999999999999999999999999999999999999999986
No 13
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.4e-42 Score=271.47 Aligned_cols=144 Identities=37% Similarity=0.556 Sum_probs=134.2
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (167)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~ 81 (167)
||+++++.++|+|+||||| |++++|++|||+|+.++.||+|+|.|.|+|+|++|+++|++.+|++.|+|.|
T Consensus 39 ~l~~~~~~~~i~i~INSpG---------G~v~~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~ 109 (182)
T PF00574_consen 39 YLENEDKNKPINIYINSPG---------GDVDAGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRF 109 (182)
T ss_dssp HHHHHTSSSEEEEEEEECE---------BCHHHHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EE
T ss_pred HHhccCCCceEEEEEcCCC---------CccHHHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEE
Confidence 5777888999999999999 9999999999999999999999999999999999999999888999999999
Q ss_pred eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
|+|+|+ ..+.|+..+++..++++.+.++.+.++|+++||+++++++++|++|+||+|+||++|||||+|++++
T Consensus 110 m~H~p~-~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 110 MIHQPS-TGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp EES-CE-EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred Eeecce-eecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence 999998 6788899999999999999999999999999999999999999999999999999999999999763
No 14
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=3.6e-41 Score=262.20 Aligned_cols=140 Identities=44% Similarity=0.660 Sum_probs=134.8
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (167)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~ 81 (167)
|++.+++.++|+|+||||| |++++|++||+.|+.++.||+|++.|+|+|+|++|+++|++++|++.|||++
T Consensus 32 ~~~~~~~~~~i~l~inSpG---------G~v~~~~~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~ 102 (171)
T cd07017 32 YLESEDPKKPIYLYINSPG---------GSVTAGLAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRI 102 (171)
T ss_pred HHHccCCCCceEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHH
Confidence 5677777899999999999 9999999999999999999999999999999999999999889999999999
Q ss_pred eeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001 82 KLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (167)
Q Consensus 82 miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I 151 (167)
|+|+|+ ....|++.|+..+++++.++++.+.++|+++||++.+++.++|++++||+|+||++|||||+|
T Consensus 103 ~~h~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 103 MIHQPL-GGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHcCCC-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 999998 678899999999999999999999999999999999999999999999999999999999986
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=4.3e-32 Score=208.27 Aligned_cols=132 Identities=29% Similarity=0.359 Sum_probs=126.2
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001 8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (167)
Q Consensus 8 ~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~ 87 (167)
..++|.|+||||| |++.++++|++.|+.++.||++++.|.|+|+|++|+++|+ +|++.|+++||+|+|+
T Consensus 29 ~~~~i~l~inspG---------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d--~~~~~~~a~~~~~~~~ 97 (160)
T cd07016 29 DDSDITVRINSPG---------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGD--EVEMPPNAMLMIHNPS 97 (160)
T ss_pred CCCCEEEEEECCC---------CCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCC--eEEECCCcEEEEECCc
Confidence 3489999999999 9999999999999999999999999999999999999995 7999999999999998
Q ss_pred ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (167)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I 151 (167)
....|+..+++...+++++.++.+.+.|++++|++++++.+++.+++||+++||+++||||+|
T Consensus 98 -~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 98 -TGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred -cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 667788889999999999999999999999999999999999999999999999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.97 E-value=4.6e-31 Score=205.91 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=123.3
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhcCCCCceeeecCCcee
Q 031001 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (167)
Q Consensus 6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~---G~aaS~a~~i~~ag~~~~R~~~p~s~~m 82 (167)
+++.+.|.|+||||| |.++++++|+++|+.++.||.|+|. |+|+|+|++|+++|+ +|++.|+++++
T Consensus 27 ~~~~~~i~l~inSPG---------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~--~i~m~p~s~iG 95 (172)
T cd07015 27 QDNAEAIIIELDTPG---------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSH--LIAMAPGTSIG 95 (172)
T ss_pred cCCCCeEEEEEECCC---------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcC--ceEECCCCEEE
Confidence 356789999999999 9999999999999999999999999 999999999999995 69999999999
Q ss_pred eecccccCCcCC-----hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001 83 LYLPVVGRSSGP-----VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (167)
Q Consensus 83 iH~p~~~~~~G~-----~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (167)
.|+|. .. .|+ ..+.+....++.++++ +++++|++++.+++++.+++|||++||++||+||.|.++.++
T Consensus 96 ~~~pi-~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ 168 (172)
T cd07015 96 ACRPI-LG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINE 168 (172)
T ss_pred Ecccc-cc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHH
Confidence 99997 43 355 5566656666655554 999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 031001 158 AYEK 161 (167)
Q Consensus 158 ~~~~ 161 (167)
++++
T Consensus 169 ll~~ 172 (172)
T cd07015 169 LLKK 172 (172)
T ss_pred HhhC
Confidence 8864
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.95 E-value=4.6e-27 Score=179.89 Aligned_cols=136 Identities=24% Similarity=0.349 Sum_probs=123.6
Q ss_pred CCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001 4 DFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (167)
Q Consensus 4 ~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi 83 (167)
+.+++.+.|.|++|||| |++.++.+|+++|+.++.||++++.|.|+|+|++|+++|+ +|++.|++.+++
T Consensus 24 ~~d~~~~~ivl~~~s~G---------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d--~~~~~~~a~~~~ 92 (161)
T cd00394 24 EADNSVKAIVLEVNTPG---------GRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN--KIVMAPGTRVGS 92 (161)
T ss_pred HhCCCCceEEEEEECCC---------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC--EEEECCCCEEEE
Confidence 44555789999999999 9999999999999999999999999999999999999995 899999999999
Q ss_pred ecccccCCcCC--hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001 84 YLPVVGRSSGP--VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (167)
Q Consensus 84 H~p~~~~~~G~--~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I 151 (167)
|+|+ ....+. ..+.+...+.++.+.+.+.+.+++++|++++++.+++.+++||+|+||+++||||+|
T Consensus 93 ~g~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 93 HGPI-GGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred eeeE-EecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 9998 444443 366666778899999999999999999999999999999999999999999999986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.94 E-value=1.4e-25 Score=176.77 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=124.0
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhcCCCCceeeecCCceee
Q 031001 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (167)
Q Consensus 7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~---G~aaS~a~~i~~ag~~~~R~~~p~s~~mi 83 (167)
++.+.|.|+||||| |+++++.+|++.|+.++.||.+.+. |.|+|+|++|+++| +.|++.|+++|++
T Consensus 28 ~~~~~vvl~InSpG---------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~--D~iva~p~a~~g~ 96 (187)
T cd07020 28 GGADALIIELDTPG---------GLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLAA--HIAAMAPGTNIGA 96 (187)
T ss_pred CCCCEEEEEEECCC---------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhC--CceeECCCCcEEe
Confidence 34689999999999 9999999999999999999999998 99999999999999 4799999999999
Q ss_pred ecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhhhc
Q 031001 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRV 163 (167)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~~ 163 (167)
|.|. ....+...+.....+.+..+. .+...+++++|++++.+++++.+++||+++||+++||+|+|.++.++++...+
T Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~~~ 174 (187)
T cd07020 97 AHPV-AIGGGGGSDPVMEKKILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKLD 174 (187)
T ss_pred cccc-ccCCCCcchHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHHcC
Confidence 9997 332222223333344444444 35678999999999999999999999999999999999999999888888777
Q ss_pred ccC
Q 031001 164 MIT 166 (167)
Q Consensus 164 ~~~ 166 (167)
+-+
T Consensus 175 ~~~ 177 (187)
T cd07020 175 GRT 177 (187)
T ss_pred CcE
Confidence 654
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.92 E-value=2.2e-24 Score=169.20 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=119.0
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecc
Q 031001 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLP 86 (167)
Q Consensus 7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p 86 (167)
++.+.|.|+||||| |.++++..|++.|+.++.||++++.|.|+|+|++|+++| +++++.|++.++.|.|
T Consensus 28 ~~~~~ivl~inspG---------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~--d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 28 EGADAVVLDIDTPG---------GRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAA--DEIYMAPGATIGAAEP 96 (178)
T ss_pred CCCCeEEEEEECcC---------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhC--CeEEECCCCeEecCee
Confidence 44689999999999 999999999999999999999999999999999999999 5799999999999999
Q ss_pred cccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC-------------ccccHHHHHHcCcceEEeC
Q 031001 87 VVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP-------------KYMQAKEAIVYGLADKIID 153 (167)
Q Consensus 87 ~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~-------------~~lsa~EA~e~GliD~I~~ 153 (167)
. ....+...+ +.+......+.+.|++++|++++.++++++++ .|||++||+++|++|.|.+
T Consensus 97 v-~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~ 170 (178)
T cd07021 97 I-PGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAG 170 (178)
T ss_pred E-cCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEEC
Confidence 7 433332222 22333344556679999999999999999999 5999999999999999999
Q ss_pred CchHHHhh
Q 031001 154 SQDAAYEK 161 (167)
Q Consensus 154 ~~~~~~~~ 161 (167)
+.++++++
T Consensus 171 ~~~~ll~~ 178 (178)
T cd07021 171 SLDELLVK 178 (178)
T ss_pred CHHHHhhC
Confidence 99998864
No 20
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.75 E-value=3e-17 Score=127.92 Aligned_cols=135 Identities=21% Similarity=0.187 Sum_probs=112.6
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHh---hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMA---YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (167)
Q Consensus 7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~---~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi 83 (167)
+..+.|.|.+||+| |++.....+.++++ .++.||.+++.|.|+|+|+.++++| +.|++.|++.|++
T Consensus 38 ~~v~~vvl~~~~~g---------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~--D~i~a~~~a~~~~ 106 (177)
T cd07014 38 PKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPA--NYIVANPSTLVGS 106 (177)
T ss_pred CCceEEEEEeeCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhC--CEEEECCCCeEEE
Confidence 34578999999999 99887777766554 5579999999999999999999999 4799999999999
Q ss_pred ecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhh
Q 031001 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK 161 (167)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~ 161 (167)
|.++. + .......+..+.+.+.+.+++..|++.+.+.+++....||+|+||+++||||+|.. .+++.++
T Consensus 107 ~G~~~----~----~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~-~~e~~~~ 175 (177)
T cd07014 107 IGIFG----V----QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGS-FDDAVAK 175 (177)
T ss_pred echHh----h----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCC-HHHHHHH
Confidence 87762 1 11123467788889999999999999999999999999999999999999999986 4555543
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.72 E-value=1.6e-16 Score=126.95 Aligned_cols=136 Identities=21% Similarity=0.222 Sum_probs=108.3
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcC--CCeEEEEccccccHHHHHHhcCCCCceeeecCCceee-
Q 031001 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL- 83 (167)
Q Consensus 7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~--~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi- 83 (167)
+..+.|.|.+|||| |++..+..|++.|+.++ .||++++.|.|+|+|++|+++| ++|++.|++.+..
T Consensus 29 ~~i~~vvl~~~s~G---------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aa--D~i~a~p~a~vg~i 97 (207)
T TIGR00706 29 KSIKALLLRINSPG---------GTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAA--DEIVANPGTITGSI 97 (207)
T ss_pred CCccEEEEEecCCC---------CCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcC--CEEEECCCCeEEee
Confidence 34578999999999 99999999999999998 9999999999999999999999 5799999987533
Q ss_pred -----ecccc------c-----CCcCC------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCc
Q 031001 84 -----YLPVV------G-----RSSGP------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPK 135 (167)
Q Consensus 84 -----H~p~~------~-----~~~G~------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~ 135 (167)
|.... + ...|+ ..+-+...+.|+.+.+.+.+.+++..|+++++++++++...
T Consensus 98 Gv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~ 177 (207)
T TIGR00706 98 GVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRV 177 (207)
T ss_pred eEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCc
Confidence 32110 0 00111 11223334567777888999999999999999999887765
Q ss_pred cccHHHHHHcCcceEEeCC
Q 031001 136 YMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 136 ~lsa~EA~e~GliD~I~~~ 154 (167)
++++||+++||||+|...
T Consensus 178 -~~~~~A~~~gLvD~i~~~ 195 (207)
T TIGR00706 178 -FTGRQALKLRLVDKLGTE 195 (207)
T ss_pred -ccHHHHHHcCCCcccCCH
Confidence 699999999999999753
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.69 E-value=5.7e-16 Score=123.56 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=108.6
Q ss_pred CCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (167)
Q Consensus 5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~ 81 (167)
..+..+.|.|.+|||| |++..+..++++++.. +.||++++.|.|+|+|..|+++| ++|++.|+|.+
T Consensus 31 ~d~~i~~ivl~~~s~G---------g~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa--D~i~a~~~s~~ 99 (208)
T cd07023 31 EDDSVKAVVLRINSPG---------GSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA--DKIVANPTTIT 99 (208)
T ss_pred hCCCCcEEEEEEECCC---------CCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC--CEEEECCCCeE
Confidence 3445789999999999 9999999998888654 57999999999999999999998 57999999986
Q ss_pred ------eee------------cccccCCcC------------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q 031001 82 ------KLY------------LPVVGRSSG------------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI 131 (167)
Q Consensus 82 ------miH------------~p~~~~~~G------------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 131 (167)
+.| ++.. ...| +..+-+...+.|+.+.+.+.+.+++..|++.+++.++.
T Consensus 100 g~iG~~~~~~~~~~~l~k~Gi~~~~-~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~ 178 (208)
T cd07023 100 GSIGVIGQGPNLEELLDKLGIERDT-IKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLA 178 (208)
T ss_pred EeCcEEEecCCHHHHHHhcCCceEE-EecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc
Confidence 333 1110 0111 11233444567788888999999999999999999988
Q ss_pred CCCccccHHHHHHcCcceEEeCCch
Q 031001 132 QRPKYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 132 ~~~~~lsa~EA~e~GliD~I~~~~~ 156 (167)
+.+. +++++|+++||||+|....+
T Consensus 179 ~~~~-~~a~~A~~~gLiD~i~~~~~ 202 (208)
T cd07023 179 DGRV-WTGRQALELGLVDELGGLDD 202 (208)
T ss_pred CCcE-EEHHHHHHcCCCcccCCHHH
Confidence 8666 47999999999999975433
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.65 E-value=5.1e-15 Score=118.77 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=107.8
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcC--CCeEEEEccccccHHHHHHhcCCCCceeeecCCcee-
Q 031001 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK- 82 (167)
Q Consensus 6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~--~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~m- 82 (167)
.+..+.|.|.+||+| |++.....|+++|+.++ .||.+++.|.|+|.|..++++| +++++.|++.+.
T Consensus 40 d~~i~~Vvl~~~s~g---------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~a--D~i~a~~~a~~g~ 108 (214)
T cd07022 40 DPDVRAIVLDIDSPG---------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAA--DRIVVTPTAGVGS 108 (214)
T ss_pred CCCCcEEEEEEeCCC---------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcC--CEEEEcCCCeEEe
Confidence 344578999999999 99999999999999988 9999999999999999999999 479999999852
Q ss_pred -----eecccc------c-----CCcCC------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001 83 -----LYLPVV------G-----RSSGP------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP 134 (167)
Q Consensus 83 -----iH~p~~------~-----~~~G~------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 134 (167)
.|.... + ...|. ..+-+...+.++.+.+.+.+.+++..|++.+++.+.+ .
T Consensus 109 iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~ 186 (214)
T cd07022 109 IGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--G 186 (214)
T ss_pred eeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--c
Confidence 222110 0 01121 1233334456777888999999999999999999888 6
Q ss_pred ccccHHHHHHcCcceEEeC
Q 031001 135 KYMQAKEAIVYGLADKIID 153 (167)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~ 153 (167)
..|+++||+++||||+|..
T Consensus 187 ~~~~~~~Al~~gLvD~i~~ 205 (214)
T cd07022 187 GVFRGQEAVAAGLADAVGT 205 (214)
T ss_pred CeeeHHHHHHcCCCcccCC
Confidence 6789999999999999964
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.63 E-value=9e-15 Score=132.81 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=108.9
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce---
Q 031001 8 ASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST--- 81 (167)
Q Consensus 8 ~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~--- 81 (167)
..+.|.|+||||| |++.++..|++.|+.. +.||++.+.|.|+|+|.+|+++| +++++.|++.+
T Consensus 346 ~VkaIVLrinSpG---------Gs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aa--D~I~a~p~t~~GSI 414 (584)
T TIGR00705 346 DIKAVVLRINSPG---------GSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAA--DYIVASPNTITGSI 414 (584)
T ss_pred CceEEEEEecCCC---------CCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhC--CEEEECCCCeeecC
Confidence 3589999999999 9999999999998744 48999999999999999999999 47999999976
Q ss_pred ---eeeccc------cc-----CCcC-----------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCcc
Q 031001 82 ---KLYLPV------VG-----RSSG-----------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKY 136 (167)
Q Consensus 82 ---miH~p~------~~-----~~~G-----------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 136 (167)
+.+... ++ ..+| +..+.+...+.++...+.+.+.+++..|++.++++++.+...|
T Consensus 415 Gv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~ 494 (584)
T TIGR00705 415 GVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW 494 (584)
T ss_pred EEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc
Confidence 544211 00 0011 2344455567788888899999999999999999998886555
Q ss_pred ccHHHHHHcCcceEEeCC
Q 031001 137 MQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 137 lsa~EA~e~GliD~I~~~ 154 (167)
+++||+++||||+|..-
T Consensus 495 -tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 495 -TGEDAVSNGLVDALGGL 511 (584)
T ss_pred -CHHHHHHcCCcccCCCH
Confidence 99999999999999654
No 25
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.62 E-value=5.9e-15 Score=125.13 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=111.7
Q ss_pred CCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCC--CeEEEEccccccHHHHHHhcCCCCceeeecCCce-
Q 031001 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKS--KVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST- 81 (167)
Q Consensus 5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~--~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~- 81 (167)
..++.++|.|.||||| |++.++..|++.|+.++. ||++.+-++|||.|++|.+++ ++.++.|+|.+
T Consensus 94 ~~~~vk~vvL~inSPG---------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aA--d~I~a~p~si~G 162 (317)
T COG0616 94 ADPSVKAVVLRINSPG---------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAA--DKIVADPSSITG 162 (317)
T ss_pred cCCCCceEEEEEECcC---------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccC--CEEEecCCceee
Confidence 3456799999999999 999999999999999986 599999999999999999999 57999999983
Q ss_pred -----eeecccc------c-----CCcCC-----------hhHHH-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCC
Q 031001 82 -----KLYLPVV------G-----RSSGP-----------VTDMW-RKAKDLEANAESYIELLAKGTGKPKEEIAKDIQR 133 (167)
Q Consensus 82 -----miH~p~~------~-----~~~G~-----------~~dl~-~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~ 133 (167)
+.|.... + ..+|. ..+.+ ...+.++...+.|.+..++..+.+.++ ......
T Consensus 163 SIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~-~~~~a~ 241 (317)
T COG0616 163 SIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEA-VDKLAT 241 (317)
T ss_pred eceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHhc
Confidence 3332210 0 11121 22222 223466677788999999999999888 445566
Q ss_pred CccccHHHHHHcCcceEEeCCchHHHh
Q 031001 134 PKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 134 ~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
...+++++|++.||||++.+..+.+..
T Consensus 242 g~v~~g~~A~~~gLVDelg~~~~av~~ 268 (317)
T COG0616 242 GRVWTGQQALELGLVDELGGLDDAVKD 268 (317)
T ss_pred cceecHHHhhhcCCchhcCCHHHHHHH
Confidence 888899999999999999887665543
No 26
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.61 E-value=3e-14 Score=114.18 Aligned_cols=138 Identities=23% Similarity=0.242 Sum_probs=105.9
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHH---hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCcee
Q 031001 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAM---AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (167)
Q Consensus 6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i---~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~m 82 (167)
.+..+.|.|.+||+| |++.+...++++| +.++.||++++.|.|+|+|+.|+++| +.+++.|++.+.
T Consensus 36 d~~v~~ivL~~~s~G---------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~a--D~i~a~~~a~~g 104 (211)
T cd07019 36 DPKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPA--NYIVANPSTLTG 104 (211)
T ss_pred CCCceEEEEEEcCCC---------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhC--CEEEEcCCCEEE
Confidence 334589999999999 9999988888765 45678999999999999999999999 579999998863
Q ss_pred eeccc------------cc------CCcC----------ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001 83 LYLPV------------VG------RSSG----------PVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP 134 (167)
Q Consensus 83 iH~p~------------~~------~~~G----------~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 134 (167)
..-.. ++ ...| ++.+-+...+.++.+.+.+.+.+++..+++++++++..+ +
T Consensus 105 siGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~-~ 183 (211)
T cd07019 105 SIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQ-G 183 (211)
T ss_pred EeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcC-C
Confidence 22110 00 0001 111122233567888889999999999999999988654 6
Q ss_pred ccccHHHHHHcCcceEEeCCc
Q 031001 135 KYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+++++||+++||||+|....
T Consensus 184 ~~~~~~~A~~~GLvD~i~~~~ 204 (211)
T cd07019 184 HVWTGQDAKANGLVDSLGDFD 204 (211)
T ss_pred cEEeHHHHHHcCCcccCCCHH
Confidence 899999999999999987643
No 27
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.51 E-value=5.2e-13 Score=107.74 Aligned_cols=140 Identities=19% Similarity=0.121 Sum_probs=107.6
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhh---cCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001 7 NASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAY---CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (167)
Q Consensus 7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~---~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi 83 (167)
+..+.|.|.+|||| |.+.+...|++.|+. .+.||.+++.| |+|.|.+|+++| +++++.|++.+.+
T Consensus 45 ~~ik~vvL~~~s~g---------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaa--d~I~a~p~~~vg~ 112 (222)
T cd07018 45 DRIKGIVLDLDGLS---------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAA--DEIYLNPSGSVEL 112 (222)
T ss_pred CCeEEEEEECCCCC---------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhC--CEEEECCCceEEe
Confidence 34588999999999 999999999998865 45899999987 999999999998 5799999999877
Q ss_pred eccccc-----------------CCcCC--------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhC
Q 031001 84 YLPVVG-----------------RSSGP--------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQ 132 (167)
Q Consensus 84 H~p~~~-----------------~~~G~--------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~ 132 (167)
.-.... ...|. ..+-+...+.++.+.+.+.+.+++..+++.+.+++..+
T Consensus 113 iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~ 192 (222)
T cd07018 113 TGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALEALID 192 (222)
T ss_pred eccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 632200 00011 11112223456667788899999999999999988887
Q ss_pred CCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 133 RPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 133 ~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
...+++++|++.||||+|. ..+++++
T Consensus 193 -~~~~~~~~A~~~GLvD~i~-~~~e~~~ 218 (222)
T cd07018 193 -LGGDSAEEALEAGLVDGLA-YRDELEA 218 (222)
T ss_pred -cCCcHHHHHHHCCCCCcCC-cHHHHHH
Confidence 7789999999999999997 4444444
No 28
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.4e-13 Score=118.43 Aligned_cols=140 Identities=18% Similarity=0.199 Sum_probs=117.5
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEc---cccccHHHHHHhcCCCCceeeecCCceeeec
Q 031001 9 SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNC---GMAYGQAAMLLSVGAKGYRGLQPNSSTKLYL 85 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~---G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~ 85 (167)
...+.|.+|+|| |-+++++.|..+|..++.||+.++. ++|+|+|++|+++++ .-+|.|.+.+.-.+
T Consensus 57 a~~vvl~ldTPG---------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~h--iaaMAPgT~iGaa~ 125 (436)
T COG1030 57 AAAVVLELDTPG---------GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATH--IAAMAPGTNIGAAT 125 (436)
T ss_pred CcEEEEEecCCC---------chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcC--hhhhCCCCcccccc
Confidence 478999999999 9999999999999999999998883 479999999999995 46899999999999
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhhhccc
Q 031001 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRVMI 165 (167)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~~~~ 165 (167)
|... .|+..+-+. ..+.-..+.+-.++..|++++..+++..++.-++++||.++|+||-|-.+..|++.+.++.
T Consensus 126 Pi~~--~g~~~~~~~----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~ 199 (436)
T COG1030 126 PIAG--GGTSAKEAN----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGR 199 (436)
T ss_pred eecC--CCCCccchh----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHccCC
Confidence 9732 233333221 2222334556788999999999999999999999999999999999999999999988764
No 29
>PRK10949 protease 4; Provisional
Probab=99.41 E-value=7e-12 Score=114.58 Aligned_cols=139 Identities=25% Similarity=0.270 Sum_probs=105.9
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCc--
Q 031001 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS-- 80 (167)
Q Consensus 6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~-- 80 (167)
.+..+.|.|.||||| |++.+...|++.|+.. +.||++.+.+.|+|.|.+|++++ ++.++.|.+.
T Consensus 362 D~~vkaVvLrInSpG---------Gs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aa--d~I~a~p~t~tG 430 (618)
T PRK10949 362 DPKVKAIVLRVNSPG---------GSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPA--NYIVASPSTLTG 430 (618)
T ss_pred CCCCcEEEEEecCCC---------CcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhc--CEEEECCCCcee
Confidence 345689999999999 9999999999998654 57999999999999999999999 5789999766
Q ss_pred ----eeeeccc------cc-----CCcCC-----------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001 81 ----TKLYLPV------VG-----RSSGP-----------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP 134 (167)
Q Consensus 81 ----~miH~p~------~~-----~~~G~-----------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 134 (167)
++.|.-. ++ ...|+ ..+-+.....++..-+.+.+..++..+++.++++++. ++
T Consensus 431 SIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia-~G 509 (618)
T PRK10949 431 SIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIA-QG 509 (618)
T ss_pred eCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHh-cC
Confidence 3333211 00 00111 1122223356677778888999999999999998855 56
Q ss_pred ccccHHHHHHcCcceEEeCCch
Q 031001 135 KYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~~~~ 156 (167)
+.+++++|++.||||++..-.+
T Consensus 510 rv~tg~~A~~~GLVD~lG~~~~ 531 (618)
T PRK10949 510 HVWTGQDAKANGLVDSLGDFDD 531 (618)
T ss_pred CcccHHHHHHcCCCccCCCHHH
Confidence 7899999999999999976443
No 30
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.40 E-value=9.1e-12 Score=106.09 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=94.9
Q ss_pred CCCCCeEEEEcCCCCCCCCCCCCCCHHH---HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001 7 NASKPIYLYINSSGTQNEKKESVGAETD---AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (167)
Q Consensus 7 ~~~~~I~l~INS~G~~~~~~~~~G~v~~---g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi 83 (167)
.+.+.|.|.||||| |.+.. +......++..+.||++.+.+.|+|.|.++++++ ++.++.|.+.+..
T Consensus 121 ~~~~aVvLridSpG---------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaA--D~I~A~P~a~vGS 189 (330)
T PRK11778 121 KPGDEVLLRLESPG---------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVA--DKIIAAPFAIVGS 189 (330)
T ss_pred cCCCeEEEEEeCCC---------CchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhC--CEEEECCCCeEEe
Confidence 34478999999999 99876 3344455666678999999999999999999999 5789999987532
Q ss_pred ec-----cccc------------CCcCC------------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCC
Q 031001 84 YL-----PVVG------------RSSGP------------VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRP 134 (167)
Q Consensus 84 H~-----p~~~------------~~~G~------------~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 134 (167)
.- |... ...|. ..+-+...++|+.+.+.+.+..++..+ ..++++..+ +
T Consensus 190 IGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~-G 266 (330)
T PRK11778 190 IGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRP--QLDIDKVAT-G 266 (330)
T ss_pred eeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHh-C
Confidence 21 1100 01121 112223345667777788888887654 233444444 4
Q ss_pred ccccHHHHHHcCcceEEeCCchHH
Q 031001 135 KYMQAKEAIVYGLADKIIDSQDAA 158 (167)
Q Consensus 135 ~~lsa~EA~e~GliD~I~~~~~~~ 158 (167)
..+++++|+++||||+|...++-+
T Consensus 267 ~v~~g~~Al~~GLVD~Ig~~dd~i 290 (330)
T PRK11778 267 EHWYGQQALELGLVDEIQTSDDYL 290 (330)
T ss_pred CCcCHHHHHHCCCCCcCCCHHHHH
Confidence 567999999999999998765543
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.38 E-value=1.2e-11 Score=102.30 Aligned_cols=131 Identities=24% Similarity=0.243 Sum_probs=94.4
Q ss_pred CCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (167)
Q Consensus 5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH 84 (167)
..++.++|.|.|+||| |.+.++..|.+.|+.++.++++++-..|.|+|++|++++ ++-++.|+|.+.--
T Consensus 86 ~~~~~~~IdLii~TpG---------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaA--DeIvM~p~a~LGpi 154 (285)
T PF01972_consen 86 EAPKDKPIDLIIHTPG---------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAA--DEIVMGPGAVLGPI 154 (285)
T ss_pred hcCCCCceEEEEECCC---------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhC--CeEEECCCCccCCC
Confidence 3455689999999999 999999999999999999999999999999999999999 47899999998877
Q ss_pred cccccCCcC-------------ChhH----HHH-HHHHHHHHHHHHHHHHHHHhCCCHH---HHHhhhCC-----Ccccc
Q 031001 85 LPVVGRSSG-------------PVTD----MWR-KAKDLEANAESYIELLAKGTGKPKE---EIAKDIQR-----PKYMQ 138 (167)
Q Consensus 85 ~p~~~~~~G-------------~~~d----l~~-~~~~l~~~~~~~~~~~a~~tg~~~~---~i~~~~~~-----~~~ls 138 (167)
.|.++..-. ..+| +.. ..+.+.++++...+++.++ .+.+ +|.+.+.. |.-++
T Consensus 155 DPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~--~~~eka~~ia~~L~~g~~tHdypi~ 232 (285)
T PF01972_consen 155 DPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDK--MDEEKAEEIAEKLSSGKWTHDYPIT 232 (285)
T ss_pred CccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCCCCCC
Confidence 776432110 0111 001 1123444444444555443 3444 44444444 45599
Q ss_pred HHHHHHcCcc
Q 031001 139 AKEAIVYGLA 148 (167)
Q Consensus 139 a~EA~e~Gli 148 (167)
++||+++||=
T Consensus 233 ~eea~~lGL~ 242 (285)
T PF01972_consen 233 VEEAKELGLP 242 (285)
T ss_pred HHHHHHcCCC
Confidence 9999999984
No 32
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.11 E-value=9.7e-10 Score=84.02 Aligned_cols=114 Identities=22% Similarity=0.203 Sum_probs=79.7
Q ss_pred HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccc------------c-----CCcC----------C
Q 031001 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV------------G-----RSSG----------P 94 (167)
Q Consensus 42 i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~------------~-----~~~G----------~ 94 (167)
.+..+.||++++.+.++|++.+|+++| ++.++.|.|.+...-... + ...| .
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~a--d~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAA--DEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTS--SEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcC--CEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 467789999999999999999999998 578999998864432110 0 0011 1
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 95 --VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 95 --~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
..+-+...+.|+.+.+.+.+.+++..|++.++++++.+. ..|+++||+++||||+|.. .++++
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~-~~~~~ 144 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGT-FDEAI 144 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETS-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCC-HHHHH
Confidence 122233345677778889999999999999999998876 8889999999999999964 44433
No 33
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.78 E-value=1.2e-07 Score=86.59 Aligned_cols=138 Identities=17% Similarity=0.115 Sum_probs=100.5
Q ss_pred CCCCCCeEEEEcC-CCCCCCCCCCCCCHHHHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001 6 DNASKPIYLYINS-SGTQNEKKESVGAETDAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (167)
Q Consensus 6 ~~~~~~I~l~INS-~G~~~~~~~~~G~v~~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~ 81 (167)
.+..+.|.|.+|| || |.+.....|+++|+.. +.||.++..+. +|.+.+|++++ ++.++.|.+.+
T Consensus 91 D~~IkgIvL~i~~~~g---------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~A--D~I~~~p~G~v 158 (584)
T TIGR00705 91 DRRIEGLVFDLSNFSG---------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFA--DEIILNPMGSV 158 (584)
T ss_pred CCCceEEEEEccCCCC---------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhC--CEEEECCCceE
Confidence 3445899999996 56 7888888899988754 58999987654 68899988888 57899999988
Q ss_pred eeecccc---------------------c-------CCc-CC-hhHHHH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q 031001 82 KLYLPVV---------------------G-------RSS-GP-VTDMWR-KAKDLEANAESYIELLAKGTGKPKEEIAKD 130 (167)
Q Consensus 82 miH~p~~---------------------~-------~~~-G~-~~dl~~-~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 130 (167)
.++-... + ++. .+ ..+-++ ....|+.+.+.+.+..++..+++++++.+.
T Consensus 159 ~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~ 238 (584)
T TIGR00705 159 DLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPY 238 (584)
T ss_pred EeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 6642210 0 010 01 122222 335667778889999999999999999988
Q ss_pred hCCCcc-------ccHHHHHHcCcceEEeCCc
Q 031001 131 IQRPKY-------MQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 131 ~~~~~~-------lsa~EA~e~GliD~I~~~~ 155 (167)
.+.-.| .++++|++.||||+|....
T Consensus 239 a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~d 270 (584)
T TIGR00705 239 AQGLLELLQKLNGDGARYALAEKLVTAVCSYA 270 (584)
T ss_pred HhHHHHHHHhhCCchHHHHHHCCCcccCCCHH
Confidence 775444 3899999999999997543
No 34
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.66 E-value=2.8e-07 Score=71.73 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHH
Q 031001 33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAE 110 (167)
Q Consensus 33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~ 110 (167)
.....++..+..++.|+.+.+.|.|.+.|+.+++++ +.|++.+++.|.+..+..+..- |....+
T Consensus 80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l------------ 145 (195)
T cd06558 80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGLVPGGGGTQRL------------ 145 (195)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCCCCCCcHHHHH------------
Confidence 345677788888999999999999999999999998 5899999998888665533221 111111
Q ss_pred HHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 111 SYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 111 ~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
.++.| .....+++-....++++||+++|++|++++. +++.+
T Consensus 146 ------~~~~g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~ 186 (195)
T cd06558 146 ------PRLVG--PARARELLLTGRRISAEEALELGLVDEVVPD-EELLA 186 (195)
T ss_pred ------HHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHH
Confidence 11112 2333444556888999999999999999986 44443
No 35
>PRK10949 protease 4; Provisional
Probab=98.55 E-value=1e-06 Score=81.03 Aligned_cols=138 Identities=17% Similarity=0.086 Sum_probs=94.7
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCHH-HHHHHHHHHhhc---CCCeEEEEccccccHHHHHHhcCCCCceeeecCCce
Q 031001 6 DNASKPIYLYINSSGTQNEKKESVGAET-DAYAIADAMAYC---KSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSST 81 (167)
Q Consensus 6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~-~g~aI~~~i~~~---~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~ 81 (167)
.+.-+.|.|.+|||| |... ....|.++|+.. +.||+++ ...++|.+.+|++++ ++.++.|.+.+
T Consensus 110 D~rIkgivL~i~s~g---------G~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaA--D~I~l~P~G~v 177 (618)
T PRK10949 110 DRNITGIVLDLKNFA---------GADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFA--NKIYLSPQGVV 177 (618)
T ss_pred CCCceEEEEEeCCCC---------CccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhC--CEEEECCCceE
Confidence 344578999999998 6544 446788877654 4789886 445568888888877 57899999988
Q ss_pred eeeccccc----------------------------CCc-CC-hhHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Q 031001 82 KLYLPVVG----------------------------RSS-GP-VTDMWRK-AKDLEANAESYIELLAKGTGKPKEEIAKD 130 (167)
Q Consensus 82 miH~p~~~----------------------------~~~-G~-~~dl~~~-~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 130 (167)
.++-.... ++. .+ ..+-+++ ...+..+.+.+.+.+++..+++++++...
T Consensus 178 ~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~ 257 (618)
T PRK10949 178 DLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPG 257 (618)
T ss_pred EEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 76632210 010 01 1122222 34567777888899999999999998643
Q ss_pred hCC-------CccccHHHHHHcCcceEEeCCc
Q 031001 131 IQR-------PKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 131 ~~~-------~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.++ .--++|++|++.||||+|....
T Consensus 258 a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~d 289 (618)
T PRK10949 258 AQGILEGLTKVGGDTAKYALDNKLVDALASSA 289 (618)
T ss_pred HHHHHHhhhhcCCccHHHHHHCCCCCcCCCHH
Confidence 332 1236999999999999997543
No 36
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.44 E-value=4e-06 Score=67.70 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|..++++| +.|++.++++|.+-...++ -.....-. ..
T Consensus 89 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~~------------~~ 150 (222)
T PRK05869 89 QQAVDAVAAIPKPTVAAITGYALGAGLTLALAA--DWRVSGDNVKFGATEILAG----LAPSGDGM------------AR 150 (222)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhC--CEEEecCCCEEcCchhccC----CCCCccHH------------HH
Confidence 346778889999999999999999999999999 5799999988766333322 11111000 00
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
+.+..| .....+++-...+++++||+++||+|+|.++. ++.+
T Consensus 151 l~~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~-~l~~ 192 (222)
T PRK05869 151 LTRAAG--PSRAKELVFSGRFFDAEEALALGLIDEMVAPD-DVYD 192 (222)
T ss_pred HHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch-HHHH
Confidence 111122 23334555567799999999999999998754 4443
No 37
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.43 E-value=1.4e-06 Score=69.84 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=90.5
Q ss_pred EEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcC
Q 031001 14 LYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSG 93 (167)
Q Consensus 14 l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G 93 (167)
+.+|||| |++..++++-..|+..+-.+..--..+|+|+..++|++|. .|++.|.+.+.+|||.. ..+
T Consensus 109 v~lnSpG---------Gsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGv--rRvve~~ayiGVHq~~~--~g~ 175 (245)
T COG3904 109 VTLNSPG---------GSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGV--RRVVEDFAYIGVHQITT--TGR 175 (245)
T ss_pred EEecCCC---------CcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhcce--eeeecccceeeeeeccc--cCC
Confidence 6789999 9999999999999998887777778899999999999994 79999999999999973 222
Q ss_pred C--hhHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHhhhCCC----ccccHHHHHHcCcceE
Q 031001 94 P--VTDMWRKAKDLEA-NAESYIELLAKGTGKPKEEIAKDIQRP----KYMQAKEAIVYGLADK 150 (167)
Q Consensus 94 ~--~~dl~~~~~~l~~-~~~~~~~~~a~~tg~~~~~i~~~~~~~----~~lsa~EA~e~GliD~ 150 (167)
. .... ++..... .-.+ ...|....|.++.-+..+.+.| ++++.+|-.++.|..+
T Consensus 176 ~~r~~~~--~a~Sanq~~tar-~a~ylrEMgigpgLlq~ml~tpp~dir~l~~kem~~~~L~t~ 236 (245)
T COG3904 176 RERIVNG--KAKSANQKVTAR-LAAYLREMGIGPGLLQMMLATPPSDIRQLGLKEMTAMKLVTS 236 (245)
T ss_pred ccccCcH--hhhhhhhhhHHH-HHHHHHHcCCCHHHHHHHhcCChHhhhhhhHHHHhhhccccc
Confidence 2 1121 1111111 1112 3357777888887777666544 7899999999988764
No 38
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=4.4e-06 Score=69.41 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|+-++++| +-|++.++++|.+....++..-+..--.. .|
T Consensus 104 ~~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p~~~g~~~----~l----------- 166 (277)
T PRK08258 104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVGLAGADMGACA----LL----------- 166 (277)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccCcCCCCchHHH----HH-----------
Confidence 56778889999999999999999999999999 57999999988875554332211100000 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+.. ......+++-....++++||+++||||+|.+.
T Consensus 167 ~~~v--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 167 PRII--GQGRASELLYTGRSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred HHHh--CHHHHHHHHHcCCCCCHHHHHHcCCCcEecCH
Confidence 1111 12223445556778999999999999999875
No 39
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.32 E-value=8.1e-06 Score=65.94 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC-CceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001 35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI 113 (167)
Q Consensus 35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~-s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~ 113 (167)
...++..|..++.||.+.+.|.|.+.|+.++++| +.|++.++ ++|.+-...++. .+.... . .+
T Consensus 80 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~--D~rva~~~~a~f~~pe~~~Gl---~~~~~~--~-~~-------- 143 (229)
T PRK06213 80 GSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSA--DYRIGVHGPFKIGLNEVAIGM---TMPHAA--I-EL-------- 143 (229)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhC--CeeeEecCCcEEECchhhhCC---cCChHH--H-HH--------
Confidence 3456677888999999999999999999999999 57999998 877663222111 111110 0 00
Q ss_pred HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
+.++.| .....+++-....++|+||+++||||+|.++ +++.
T Consensus 144 --l~~~~g--~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~ 184 (229)
T PRK06213 144 --ARDRLT--PSAFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLL 184 (229)
T ss_pred --HHHHcC--HHHHHHHHHcCcccCHHHHHHCCCceeccCh-HHHH
Confidence 111111 1233445567778999999999999999864 4443
No 40
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.30 E-value=6e-06 Score=68.35 Aligned_cols=103 Identities=21% Similarity=0.239 Sum_probs=70.4
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.+++.|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++.. .+.... ..+
T Consensus 100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~----p~~g~~------------~~l 161 (272)
T PRK06142 100 AAINAVADCRKPVIAAVQGWCIGGGVDLISAC--DMRYASADAKFSVREVDLGMV----ADVGSL------------QRL 161 (272)
T ss_pred HHHHHHHhCCCCEEEEecCccccchHHHHHhC--CEEEecCCCeecchhhhhCCC----CCchHH------------HHH
Confidence 45677888999999999999999999999999 479999999876643332222 111100 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
.+..| .....+++-...-++++||+++||||+|.++.+++.
T Consensus 162 ~~~~G--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~ 202 (272)
T PRK06142 162 PRIIG--DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALL 202 (272)
T ss_pred HHHhC--HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHH
Confidence 11112 223344455567799999999999999998644444
No 41
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.30 E-value=7.4e-06 Score=66.48 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHH
Q 031001 33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESY 112 (167)
Q Consensus 33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~ 112 (167)
.....++..|..++.|+.+.+.|.|.+.|+-+++++ +.|++.+++.|.+-...++..-+-. -.. .+ .+.+
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G~~p~~g-~~~----~l---~r~~ 146 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALAC--DFRIAAEDAKFGFPEVRLGIFPGAG-GTF----RL---PRLI 146 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHS--SEEEEETTTEEETGGGGGTSSSTST-HHH----HH---HHHH
T ss_pred hhhccccccchhhhhheeeccccccccccccccccc--ceEEeecccceeeeecccCcccccc-ccc----cc---ceee
Confidence 445678889999999999999999999999999999 5899999998655333222111111 110 01 1111
Q ss_pred HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (167)
| .....+++-....++|+||+++||||+|+++.+
T Consensus 147 --------g--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 147 --------G--PSRARELLLTGEPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp --------H--HHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred --------e--cccccccccccccchhHHHHhhcceeEEcCchh
Confidence 1 111123333456789999999999999998765
No 42
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.29 E-value=5.6e-06 Score=68.47 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=70.6
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-|+++| +-|++.++++|.+..+.++..-+-..-. .+-
T Consensus 99 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----~l~---------- 161 (272)
T PRK06210 99 TRYHFLTALRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFARRGLIAEHGISW-----ILP---------- 161 (272)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHhcCCCCCCchhh-----hhH----------
Confidence 34677889999999999999999999999999 5799999999988655533221111000 000
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+. .......+++-....++|+||+++||||+|.++
T Consensus 162 -~~--ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 162 -RL--VGHANALDLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred -hh--hCHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 01 123445566667788899999999999999865
No 43
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.26 E-value=1.1e-05 Score=66.15 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=70.2
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|+-++++| +.|++.++++|.+-...++. ..+..- ...
T Consensus 82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl----~p~~g~------------~~~ 143 (255)
T PRK09674 82 PQLWQRLQAFNKPLIAAVNGYALGAGCELALLC--DIVIAGENARFGLPEITLGI----MPGAGG------------TQR 143 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEeCchhhcCC----CCCccH------------HHH
Confidence 346778889999999999999999999999999 57999999988764433222 111100 001
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+.+..| ...-.+++-....|+++||+++||||+|.++.
T Consensus 144 l~~~ig--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 144 LIRSVG--KSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred HHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 112222 23334555567779999999999999998654
No 44
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.26 E-value=8.1e-06 Score=67.07 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=70.2
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++.. |...- +
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~-~~~~~------------------l 146 (257)
T PRK06495 88 ECFHAIRECAKPVIAAVNGPALGAGLGLVASC--DIIVASENAVFGLPEIDVGLA-GGGKH------------------A 146 (257)
T ss_pred HHHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEeeChhhccCcc-ccHHH------------------H
Confidence 46677889999999999999999999999999 579999999887744432222 21100 1
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+.. ......+++-....++++||+++||||+|.++
T Consensus 147 ~~~~--g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~ 182 (257)
T PRK06495 147 MRLF--GHSLTRRMMLTGYRVPAAELYRRGVIEACLPP 182 (257)
T ss_pred HHHh--CHHHHHHHHHcCCeeCHHHHHHcCCcceecCH
Confidence 1122 23445566667888999999999999999874
No 45
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.25 E-value=1.5e-05 Score=65.70 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+ |.. ..|-..+..... .| -
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~G~~p~~g~~~-~l---~------ 147 (261)
T PRK03580 84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAA--DFIVCADNASFAL--PEA--KLGIVPDSGGVL-RL---P------ 147 (261)
T ss_pred hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHC--CEEEecCCCEEeC--ccc--ccCcCCCccHHH-HH---H------
Confidence 345677888999999999999999999999999 5799999998765 442 122222211000 01 1
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.. ......+++-....++++||+++||||+|.++
T Consensus 148 --~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (261)
T PRK03580 148 --KRL--PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182 (261)
T ss_pred --HHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEecCH
Confidence 111 22333444555678999999999999999875
No 46
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.24 E-value=1.6e-05 Score=65.37 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=68.4
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+ |.. ..|-..+..... .
T Consensus 82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~~~-~----------- 143 (255)
T PRK08150 82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAA--HIRVADESTYFAL--PEG--QRGIFVGGGGSV-R----------- 143 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhC--CEEEEeCCCEEec--ccc--ccCCCCCccHHH-H-----------
Confidence 346777888999999999999999999999999 5799999998766 442 112211110000 0
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+.+..| .....+++-....|+++||+++||||+|.+..
T Consensus 144 l~~~iG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 144 VPRLIG--VARMTDMMLTGRVYDAQEGERLGLAQYLVPAG 181 (255)
T ss_pred HHHHhC--HHHHHHHHHcCCcCCHHHHHHcCCccEeeCch
Confidence 111112 22234445556779999999999999998864
No 47
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.24 E-value=1.3e-05 Score=65.58 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=72.7
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|..+.++| +-|++.+++.|.+....+ |-..+..- .. .
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~----Gl~p~~g~--~~----------~ 145 (249)
T PRK07110 84 ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYA--DIVVLSRESVYTANFMKY----GFTPGMGA--TA----------I 145 (249)
T ss_pred HHHHHHHHcCCCCEEEEecCceechHHHHHHhC--CEEEEeCCCEecCchhcc----CCCCCchH--HH----------H
Confidence 357788889999999999999999999999999 579999999876533322 22112110 00 0
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
+.++. ......+++-...-|+++||+++||||+|.++ +++.+
T Consensus 146 l~~~~--g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~ 187 (249)
T PRK07110 146 LPEKL--GLALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLE 187 (249)
T ss_pred HHHHh--CHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHH
Confidence 11111 23445666777888999999999999999874 34433
No 48
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.24 E-value=1.1e-05 Score=66.09 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001 35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE 114 (167)
Q Consensus 35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~ 114 (167)
...+++.|..++.||.+.+.|.|.+.|.-++++| +.|++.++++|.+....++..-+-.. .. .+
T Consensus 85 ~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~-~~----~l--------- 148 (259)
T PRK06688 85 VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALAC--DLVYASESAKFSLPFAKLGLCPDAGG-SA----LL--------- 148 (259)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcch-hh----HH---------
Confidence 3567788889999999999999999999999999 57999999988775443322111100 00 01
Q ss_pred HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| .....+++-....++++||+++||||+|.++
T Consensus 149 --~~~~G--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 184 (259)
T PRK06688 149 --PRLIG--RARAAEMLLLGEPLSAEEALRIGLVNRVVPA 184 (259)
T ss_pred --HHHhh--HHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 11111 1222333444567999999999999999875
No 49
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.23 E-value=1.3e-05 Score=66.59 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=70.0
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.+++.|..++.||.+.+.|.|.+.|.-|+++| +-|++.++++|.+-...+ |-..+.... .. +
T Consensus 102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~----Gl~p~~g~~----~~--------l 163 (275)
T PLN02664 102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTAC--DIRYCSEDAFFSVKEVDL----AITADLGTL----QR--------L 163 (275)
T ss_pred HHHHHHHhCCCCEEEEECCccccchHHHHHhC--CEEEecCCCEeccHHHhh----CCCCCccHH----HH--------H
Confidence 45677888999999999999999999999999 579999999887733332 221121100 00 1
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~ 158 (167)
.+.. ......+++-....++++||+++||||+|.++.+++
T Consensus 164 ~~~v--G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l 203 (275)
T PLN02664 164 PSIV--GYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDL 203 (275)
T ss_pred HHHh--CHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHH
Confidence 1111 222334555567789999999999999998754443
No 50
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.23 E-value=1.2e-05 Score=65.97 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=72.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.+...|+.++.||.+.+.|.|.+.|+-++++| +-|++.++++|.+-...++-.-|...- ..+.+.
T Consensus 89 ~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iGl~Pg~g~~-----~~l~r~-------- 153 (257)
T COG1024 89 DLLRALADLPKPVIAAVNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLGLLPGDGGT-----QRLPRL-------- 153 (257)
T ss_pred HHHHHHHhCCCCEEEEEcceEeechhhhhhcC--CeEEecCCcEecCcccccccCCCCcHH-----HHHHHh--------
Confidence 37789999999999999999999999999999 479999999988855543322221100 011111
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
.| ...-.+++-....++++||+++||||++.+..+++.+
T Consensus 154 ---~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~ 192 (257)
T COG1024 154 ---LG--RGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLE 192 (257)
T ss_pred ---cC--HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHH
Confidence 11 1111225556788999999999999999886544443
No 51
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.21 E-value=1.1e-05 Score=66.42 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=70.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.+++.|.+ |.. ...|-....... . .+
T Consensus 93 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~--pe~-~~~G~~p~~g~~----~--------~l 155 (262)
T PRK06144 93 RVLGALEQLRVPTIAAIAGACVGGGAAIAAAC--DLRIATPSARFGF--PIA-RTLGNCLSMSNL----A--------RL 155 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeeehHHHHHHhC--CEEEecCCCEeec--hhH-HhccCCCCccHH----H--------HH
Confidence 45667788899999999999999999999999 5799999998765 331 011221111000 0 11
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
.+..| .....+++-....++++||+++||||+|+++ +++.
T Consensus 156 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~ 195 (262)
T PRK06144 156 VALLG--AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALD 195 (262)
T ss_pred HHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHH
Confidence 22222 2334455667788999999999999999876 3443
No 52
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.21 E-value=9.8e-06 Score=66.79 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-+.++| +-|++.+++.|.+..+.++..-+-..- .+ +.
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG~~p~~g~~------~~--l~------- 156 (266)
T PRK05981 94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIGLVPDGGST------WL--LP------- 156 (266)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcCCCCCccHH------HH--HH-------
Confidence 46678889999999999999999999999999 579999999988765553322111100 00 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+.. ......+++-....|+++||+++||||+|.+..
T Consensus 157 -~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 157 -RLV--GKARAMELSLLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred -HHh--HHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence 111 122234445556779999999999999998754
No 53
>PLN02888 enoyl-CoA hydratase
Probab=98.20 E-value=2.3e-05 Score=64.84 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=67.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|..++++| +.|++.+++.|.+=...++ -..+.... ..+
T Consensus 90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G----l~p~~g~~------------~~l 151 (265)
T PLN02888 90 DPVAQMERCRKPIIGAINGFAITAGFEIALAC--DILVASRGAKFIDTHAKFG----IFPSWGLS------------QKL 151 (265)
T ss_pred HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEecCCCEecCcccccc----CCCCccHh------------hHH
Confidence 45667888999999999999999999999999 5799999998866322222 11111000 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....|+++||+++||||+|.+..
T Consensus 152 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 152 SRIIG--ANRAREVSLTAMPLTAETAERWGLVNHVVEES 188 (265)
T ss_pred HHHhC--HHHHHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence 11111 22233444456688999999999999998753
No 54
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.20 E-value=1e-05 Score=66.68 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=67.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++.. .+..-. . .+
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G~~----p~~g~~--~----------~l 155 (266)
T PRK09245 94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVKLGLI----PGDGGA--W----------LL 155 (266)
T ss_pred HHHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccccCcC----CCcchh--h----------hH
Confidence 35667888999999999999999999999999 579999999887643332221 111000 0 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....|+++||+++||||+|.+..
T Consensus 156 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 156 PRIIG--MARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred HHHhh--HHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 11111 12233445556789999999999999998753
No 55
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.20 E-value=2.9e-05 Score=64.05 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=69.6
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|.-++++| +.|++.++++|.+ |.. ..|-..+..- . ..
T Consensus 84 ~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~-~-----------~~ 145 (258)
T PRK06190 84 PNPSPAWPAMRKPVIGAINGAAVTGGLELALAC--DILIASERARFAD--THA--RVGILPGWGL-S-----------VR 145 (258)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEeCCCEEEC--ccc--ccCcCCCccH-H-----------HH
Confidence 356778999999999999999999999999999 5799999998865 431 1122212100 0 01
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.+.-| .....+++-....++|+||+++||||+|.++
T Consensus 146 l~r~vG--~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~ 182 (258)
T PRK06190 146 LPQKVG--IGRARRMSLTGDFLDAADALRAGLVTEVVPH 182 (258)
T ss_pred HHHHhC--HHHHHHHHHhCCccCHHHHHHcCCCeEecCH
Confidence 111112 3344455666778999999999999999874
No 56
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.20 E-value=2.1e-05 Score=64.67 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=69.9
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..+++.|..++.||.+.+.|.|.+.|.-+.++| +-|++.++++|.+ |.. ..|-+.... . ..
T Consensus 90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~G~p~~~~---~----------~~ 150 (256)
T PRK06143 90 RDLCDAVRHFPVPVIARIPGWCLGGGLELAAAC--DLRIAAHDAQFGM--PEV--RVGIPSVIH---A----------AL 150 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCEEeehhHHHHHhC--CEEEecCCCEEeC--Ccc--ccCCCCccH---H----------HH
Confidence 346777888999999999999999999999999 5799999998876 431 112221110 0 01
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.+..| .....+++-....++|+||+++||||+|+++
T Consensus 151 l~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 187 (256)
T PRK06143 151 LPRLIG--WARTRWLLLTGETIDAAQALAWGLVDRVVPL 187 (256)
T ss_pred HHHhcC--HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH
Confidence 222222 2344555667788999999999999999875
No 57
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=1.9e-05 Score=64.82 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=70.2
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|..+++++ +.|++.++++|.+....++.. .+..-.. .
T Consensus 88 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~Gl~----p~~g~~~-~----------- 149 (260)
T PRK07511 88 HDWIRAIRAFPKPVIAAVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVKVGLT----PDGGGSW-F----------- 149 (260)
T ss_pred HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhC--CEEEeeCCCEEeccccccCcC----CCchHHH-H-----------
Confidence 346677888999999999999999999999999 579999999887743332221 1110000 0
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+.+.. ......+++-....|+++||+++||||+|.++.
T Consensus 150 l~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 150 LARAL--PRQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred HHHHh--CHHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 11111 233345556667889999999999999998764
No 58
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.19 E-value=2.6e-05 Score=64.50 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++.. ...... .|
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~----p~~~~~--~l----------- 155 (266)
T PRK08139 95 RVMQAIVALPQPVIARVHGIATAAGCQLVASC--DLAVAADTARFAVPGVNIGLF----CSTPMV--AL----------- 155 (266)
T ss_pred HHHHHHHhCCCCEEEEECceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcCCC----CCccHH--HH-----------
Confidence 35667889999999999999999999999999 579999999876633332221 111000 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....++|+||+++||||+|.++.
T Consensus 156 ~r~vG--~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 156 SRNVP--RKQAMEMLLTGEFIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred HHHhC--HHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence 11122 33345556667788999999999999999753
No 59
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=1.7e-05 Score=65.63 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+....++...+-.. . ..|
T Consensus 97 ~~~~~i~~~~kPvIaav~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~Gl~p~~g~-~----~~l----------- 158 (269)
T PRK06127 97 AAQAALADYAKPTIACIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARLGLGYGYDG-V----KNL----------- 158 (269)
T ss_pred HHHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhhCCCCCccH-H----HHH-----------
Confidence 35677889999999999999999999999999 57999999988875444322211110 0 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
.+.. ......+++-....++++||+++||||+|++. +++.
T Consensus 159 ~~~v--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~ 198 (269)
T PRK06127 159 VDLV--GPSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLE 198 (269)
T ss_pred HHHh--CHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHH
Confidence 1111 22334455556778999999999999999974 3443
No 60
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.18 E-value=2e-05 Score=64.93 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=67.8
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++...+-. -.. .+
T Consensus 87 ~l~~~i~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~~~g-~~~---------------~l 148 (261)
T PRK11423 87 QILRMIQKFPKPVIAMVEGSVWGGAFELIMSC--DLIIAASTSTFAMTPANLGVPYNLS-GIL---------------NF 148 (261)
T ss_pred HHHHHHHhCCCCEEEEEecEEechHHHHHHhC--CEEEecCCCEecCchhhcCCCCCcc-HHH---------------HH
Confidence 46777889999999999999999999999999 5799999998766333222111100 010 11
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| .....+++-....++++||+++||||+|.++
T Consensus 149 ~~~vg--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 184 (261)
T PRK11423 149 TNDAG--FHIVKEMFFTASPITAQRALAVGILNHVVEV 184 (261)
T ss_pred HHHhH--HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH
Confidence 11111 2333444556778999999999999999874
No 61
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.18 E-value=1.8e-05 Score=65.06 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=68.0
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+ |.. ..|-..+.... ..+
T Consensus 91 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~--pe~--~~Gl~p~~g~~------------~~l 152 (260)
T PRK05980 91 AMTARLEAFPKPVIAAVNGLAFGGGCEITEAV--HLAIASERALFAK--PEI--RLGMPPTFGGT------------QRL 152 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhC--CEEEecCCCEecC--ccc--ccCCCCCchHh------------hHH
Confidence 36667888999999999999999999999999 5799999998766 432 11221111000 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....++++||+++||||+|.++.
T Consensus 153 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 153 PRLAG--RKRALELLLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred HhhcC--HHHHHHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence 11112 22334555566789999999999999998753
No 62
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.18 E-value=1.2e-05 Score=65.87 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a 117 (167)
++..|..++.||.+.+.|.|.+.|.-+++++ +-|++.+++.|.+-...+ |-..+..-. ..| .
T Consensus 85 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~l----G~~p~~g~~-~~l-----------~ 146 (256)
T TIGR02280 85 LVRRLRALPLPVVCAVNGVAAGAGANLALAC--DIVLAAESARFIQAFAKI----GLIPDSGGT-WSL-----------P 146 (256)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEEeChhhhc----CCCCCccHH-HHH-----------H
Confidence 4567888999999999999999999999999 579999999886633322 211111000 001 1
Q ss_pred HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+..| ...-.+++-....++++||+++||||+|.++.
T Consensus 147 ~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 147 RLVG--RARAMGLAMLGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred HHhC--HHHHHHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence 1111 12223445556789999999999999998754
No 63
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.18 E-value=2.7e-05 Score=64.01 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=64.9
Q ss_pred HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031001 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121 (167)
Q Consensus 42 i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg 121 (167)
+..++.||.+.+.|.|.+.|.-+.++| +.|++.++++|.+-...++ -..+.... . .+.+..|
T Consensus 90 ~~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~~----~--------~l~~~vg 151 (259)
T PRK06494 90 RFDLDKPIIAAVNGVAMGGGFELALAC--DLIVAAENATFALPEPRVG----LAALAGGL----H--------RLPRQIG 151 (259)
T ss_pred HhcCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccC----CCCCchHH----H--------HHHHHcC
Confidence 446789999999999999999999999 5799999998877443322 21111100 0 1112222
Q ss_pred CCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 122 ~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
...-.+++-....++++||+++||||+|+++
T Consensus 152 --~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~ 182 (259)
T PRK06494 152 --LKRAMGMILTGRRVTAREGLELGFVNEVVPA 182 (259)
T ss_pred --HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH
Confidence 3333455666778999999999999999875
No 64
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.16 E-value=1.5e-05 Score=65.32 Aligned_cols=99 Identities=16% Similarity=0.044 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|.-+.++| +.|++.++++|.+-...++. ..+.... . .
T Consensus 87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~la~ac--D~ria~~~a~f~~pe~~~Gl----~p~~g~~--~----------~ 148 (251)
T PRK06023 87 LDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC--DLTFASPRSLFRTPFVDLAL----VPEAGSS--L----------L 148 (251)
T ss_pred HHHHHHHHhCCCCEEEEeCCceecHHHHHHHhC--CEEEEeCCCEecCcccccCC----CCCchHH--H----------H
Confidence 356778889999999999999999999999999 57999999998874433222 1111000 0 0
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.+.. ......+++-....++++||+++||||+|.+.
T Consensus 149 l~~~~--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 149 APRLM--GHQRAFALLALGEGFSAEAAQEAGLIWKIVDE 185 (251)
T ss_pred HHHHH--hHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH
Confidence 01111 12223344445677999999999999999864
No 65
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.16 E-value=2.3e-05 Score=64.36 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=67.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-+.++| +.|++.++++|.+=...+ |-..+..-. . .+
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~----Gl~p~~g~~----~--------~l 146 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMC--DIIIAADTAKFGQPEIKL----GVLPGMGGS----Q--------RL 146 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHC--CEEEEeCCCEEeCchhcc----CcCCCccHH----H--------HH
Confidence 45677888999999999999999999999999 579999999876632222 221111100 0 11
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| ...-.+++-....++++||+++||||+|++.
T Consensus 147 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (257)
T PRK05862 147 TRAVG--KAKAMDLCLTGRMMDAAEAERAGLVSRVVPA 182 (257)
T ss_pred HHHhC--HHHHHHHHHhCCccCHHHHHHcCCCCEeeCH
Confidence 11222 2223444556678999999999999999875
No 66
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.16 E-value=3e-05 Score=63.73 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=67.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++ -..+.... ..+
T Consensus 86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G----l~p~~g~~------------~~l 147 (258)
T PRK09076 86 EAFEALSAFRGVSIAAINGYAMGGGLECALAC--DIRIAEEQAQMALPEASVG----LLPCAGGT------------QNL 147 (258)
T ss_pred HHHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEecCCCEeeCcccccC----CCCCccHH------------HHH
Confidence 45677888999999999999999999999999 5799999998776332222 11111000 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....++++||+++||||+|+++.
T Consensus 148 ~~~iG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 148 PWLVG--EGWAKRMILCGERVDAATALRIGLVEEVVEKG 184 (258)
T ss_pred HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCCceecCch
Confidence 11112 22223445556778999999999999998754
No 67
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.16 E-value=2.3e-05 Score=65.02 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+=.+.++...+-. -. ..|
T Consensus 98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~~-~~----~~l----------- 159 (273)
T PRK07396 98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPKVGSFDGGY-GA----SYL----------- 159 (273)
T ss_pred HHHHHHHhCCCCEEEEECCEEehHHHHHHHhC--CEEEeeCCcEEecccccccccCCch-HH----HHH-----------
Confidence 35667888999999999999999999999999 5799999998877444432211110 00 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
.+..| .....+++-....|+|+||+++||||+|++. +++.
T Consensus 160 ~~~vG--~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~ 199 (273)
T PRK07396 160 ARIVG--QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLE 199 (273)
T ss_pred HHHhh--HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHH
Confidence 11111 2233444555678999999999999999874 3443
No 68
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.14 E-value=1.8e-05 Score=64.94 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|..++++| +-|++.++++|.+....++ -..... ... +
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~~G----l~p~~~--~~~-----------l 147 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAAS--DIVIADETAPFSLSELLFG----LIPACV--LPF-----------L 147 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcC--CEEEEcCCCEEeCchhhhc----cCcchh--hHH-----------H
Confidence 45667788899999999999999999999999 5799999998877444322 211110 001 1
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDA 157 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~ 157 (167)
.++. ......+++-...-++++||+++||||+|.++.+.
T Consensus 148 ~~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~ 186 (255)
T PRK07112 148 IRRI--GTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT 186 (255)
T ss_pred HHHh--CHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH
Confidence 1111 22333445555677999999999999999876543
No 69
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.14 E-value=2e-05 Score=64.58 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+=...++ ..|... .+
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~c--D~ria~~~a~f~~pe~~~G-~~g~~~------------------~l 143 (249)
T PRK07938 85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNA--DVIVASDDATFGLPEVDRG-ALGAAT------------------HL 143 (249)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhC--CEEEEeCCCEeeCccceec-CchhHH------------------HH
Confidence 35667888999999999999999999999999 5799999998766322222 111110 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+.. ....-.+++-....++++||+++||||+|.++
T Consensus 144 ~~~v--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 179 (249)
T PRK07938 144 QRLV--PQHLMRALFFTAATITAAELHHFGSVEEVVPR 179 (249)
T ss_pred HHhc--CHHHHHHHHHhCCcCCHHHHHHCCCccEEeCH
Confidence 1112 23344556667789999999999999999874
No 70
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.14 E-value=3.2e-05 Score=63.68 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +.|++.++++|.+=...+ |-..+..-. ..+
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g~~------------~~l 150 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHA--DIIVAGESASFGQPEIKV----GLMPGAGGT------------QRL 150 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhC--CEEEecCCCEeeCccccc----ccCCCCcHH------------HHH
Confidence 46777888999999999999999999999999 579999999876633222 211111000 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....|+++||+++||||+|.++.
T Consensus 151 ~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (261)
T PRK08138 151 VRAVG--KFKAMRMALTGCMVPAPEALAIGLVSEVVEDE 187 (261)
T ss_pred HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 11222 22334455566789999999999999998754
No 71
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.13 E-value=2.4e-05 Score=65.65 Aligned_cols=98 Identities=13% Similarity=0.015 Sum_probs=68.9
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-|+++| +-|++.++++|.+-...++.. .+.... -.|
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~----p~~g~~-~~l----------- 165 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGRRGIV----PEAASS-WFL----------- 165 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhhcCcC----CCcchh-hhH-----------
Confidence 46777889999999999999999999999999 579999999887754433221 111000 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+.. ......+++-....++++||+++||||+|.+.
T Consensus 166 ~r~v--G~~~A~~llltg~~~~a~eA~~~GLv~~vv~~ 201 (296)
T PRK08260 166 PRLV--GLQTALEWVYSGRVFDAQEALDGGLVRSVHPP 201 (296)
T ss_pred HHhh--CHHHHHHHHHcCCccCHHHHHHCCCceeecCH
Confidence 1111 12333455656677999999999999999865
No 72
>PLN02921 naphthoate synthase
Probab=98.13 E-value=3.1e-05 Score=66.18 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=69.5
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a 117 (167)
++..|+.++.||.+.+.|.|.+.|..|+++| +-|++.+++.|.+..+.++.+-+-..- ..| .
T Consensus 153 l~~~l~~~~kPvIAaVnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~Gl~p~~gg~-----~~L-----------~ 214 (327)
T PLN02921 153 LQIQIRRLPKPVIAMVAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVGSFDAGYGS-----SIM-----------A 214 (327)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccCCCCCccHH-----HHH-----------H
Confidence 5667888999999999999999999999999 579999999888765654322111000 001 1
Q ss_pred HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.. ......+++-....|+|+||+++||||+|.+.
T Consensus 215 rli--G~~~A~ellltG~~~~A~eA~~~GLV~~vv~~ 249 (327)
T PLN02921 215 RLV--GQKKAREMWFLARFYTASEALKMGLVNTVVPL 249 (327)
T ss_pred HHh--CHHHHHHHHHcCCcCCHHHHHHCCCceEEeCH
Confidence 111 22333455666778999999999999999875
No 73
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.12 E-value=3e-05 Score=64.49 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=68.0
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+ |.. ..|-..+.... ..+
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~c--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~~------------~~l 156 (275)
T PRK09120 95 GWWRRLRWYQKPTIAMVNGWCFGGGFSPLVAC--DLAIAADEAQFGL--SEI--NWGIPPGGGVS------------KAM 156 (275)
T ss_pred HHHHHHHhCCCCEEEEEcCEEechhHHHHHhC--CEEEEeCCcEecC--Ccc--ccCCCCCcchH------------HHH
Confidence 45677888999999999999999999999999 5799999998876 442 11222111000 011
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| ...-.+++-....|+++||+++||||+|++.
T Consensus 157 ~~~iG--~~~a~~llltg~~~~A~eA~~~Glv~~vv~~ 192 (275)
T PRK09120 157 ADTVG--HRDALYYIMTGETFTGRKAAEMGLVNESVPL 192 (275)
T ss_pred HHHcC--HHHHHHHHhcCCccCHHHHHHcCCcceecCH
Confidence 11122 2333445556678999999999999999874
No 74
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.12 E-value=2.2e-05 Score=65.39 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=71.0
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCC-hhHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
++..|..++.||.+.+.|.|.+.|.-++++| +.|++.++++|.+-...+ |- ..+... ...+
T Consensus 99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~l----Gl~~p~~~~------------~~~l 160 (278)
T PLN03214 99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEVAL----GIPVPKFWA------------RLFM 160 (278)
T ss_pred HHHHHHcCCCCEEEEEcCcccchHHHHHHhC--CEEEecCCCEecCcHHHh----CCCCCChhH------------HHHH
Confidence 5567888899999999999999999999999 579999999877633322 22 122110 0112
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
.+..| .....+++-...-|+++||+++||||+|++. +++.
T Consensus 161 ~~~~G--~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~ 200 (278)
T PLN03214 161 GRVID--RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALM 200 (278)
T ss_pred HHhcC--HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHH
Confidence 22232 3444556667778999999999999999875 3443
No 75
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=2.5e-05 Score=64.01 Aligned_cols=95 Identities=11% Similarity=0.040 Sum_probs=65.4
Q ss_pred HHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031001 41 AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGT 120 (167)
Q Consensus 41 ~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~t 120 (167)
.++.++.||.+.+.|.|.+.|..++++| +.|++.+++.|.+....++..-+-..-. . +.+..
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~Gl~p~~g~~~-----~-----------l~~~v 148 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQRGILPFGGATL-----R-----------FPQAA 148 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhC--CEEEecCCCEEeChhhhcCCCCCccHHH-----H-----------HHHHh
Confidence 4777899999999999999999999999 5799999998877444333211111000 0 11111
Q ss_pred CCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 121 GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 121 g~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
| .....+++-....|+++||+++||||+|.+..
T Consensus 149 G--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 149 G--WGNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred h--HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 1 12233455566789999999999999998763
No 76
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=2.7e-05 Score=64.03 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|+-++++| +-|++.++++|.+-...+ |-..+.. ... +
T Consensus 90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g--~~~-----------l 150 (262)
T PRK05995 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAAC--DIAVAADHAVFCLSEVRL----GLIPATI--SPY-----------V 150 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhC--CEEEeeCCCEEeCccccc----ccCccch--HHH-----------H
Confidence 45677888999999999999999999999999 579999999886633322 2222211 000 1
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+.. ......+++-....++++||+++||||+|.+.
T Consensus 151 ~~~v--g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (262)
T PRK05995 151 IRAM--GERAARRYFLTAERFDAAEALRLGLVHEVVPA 186 (262)
T ss_pred HHHh--CHHHHHHHHHcCCccCHHHHHHcCCCCeecCH
Confidence 1112 23333455556677999999999999999864
No 77
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=2.9e-05 Score=63.81 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=67.9
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|+-+.++| +-|++.++++|.+-...++.. .+..- ...|.+
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~----p~~g~-~~~l~~-------- 151 (260)
T PRK07657 87 RTTMEMVEQLPQPVIAAINGIALGGGLELALAC--DFRIAAESASLGLTETTLAII----PGAGG-TQRLPR-------- 151 (260)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhC--CEEEeeCCCEEcCchhccCcC----CCccH-HHHHHH--------
Confidence 346778888999999999999999999999999 579999999877643332221 11100 000111
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
..| .....+++-....++++||+++||||+|.++.
T Consensus 152 ---~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK07657 152 ---LIG--VGRAKELIYTGRRISAQEAKEIGLVEFVVPAH 186 (260)
T ss_pred ---HhC--HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHH
Confidence 111 12233444456679999999999999998753
No 78
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.11 E-value=2.5e-05 Score=64.18 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|.-++++| +.|++.++++|.+-...+ |-..+.... . .
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~~----Gl~p~~g~~----~--------~ 148 (260)
T PRK05809 87 NKVFRKLENLDKPVIAAINGFALGGGCELSMAC--DIRIASEKAKFGQPEVGL----GITPGFGGT----Q--------R 148 (260)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhC--CEEEeeCCCEEeCccccc----CCCCCccHH----H--------H
Confidence 346778889999999999999999999999999 579999999887643332 222221100 0 0
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.+..| .....+++-....++++||+++||||+|.++
T Consensus 149 l~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (260)
T PRK05809 149 LARIVG--PGKAKELIYTGDMINAEEALRIGLVNKVVEP 185 (260)
T ss_pred HHHHhC--HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh
Confidence 111111 1233444555667999999999999999874
No 79
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.10 E-value=2.7e-05 Score=64.08 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-+.++| +-|++.++++|.+-...++..-+-.. . ..|-+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G~~p~~~~-~----~~l~~--------- 151 (259)
T TIGR01929 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVC--DLTIAAENARFGQTGPKVGSFDGGYG-S----SYLAR--------- 151 (259)
T ss_pred HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhC--CEEEecCCCEecCcccccccCCCccH-H----HHHHH---------
Confidence 46677889999999999999999999999999 57999999988875544332211100 0 00111
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
..| .....+++-....++++||+++||||+|+++
T Consensus 152 --~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (259)
T TIGR01929 152 --IVG--QKKAREIWFLCRQYDAEQALDMGLVNTVVPL 185 (259)
T ss_pred --HhH--HHHHHHHHHhCCccCHHHHHHcCCcccccCH
Confidence 111 1122334445667999999999999999875
No 80
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.09 E-value=4.3e-05 Score=62.36 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=69.4
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeec-CCceeeecccccCCcCCh-hHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQP-NSSTKLYLPVVGRSSGPV-TDMWRKAKDLEANAESYIE 114 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p-~s~~miH~p~~~~~~G~~-~dl~~~~~~l~~~~~~~~~ 114 (167)
.++..|..++.||.+.+.|.|.+.|..+++++ +.|++.+ .++|.+-...+ |-. .+.. ..
T Consensus 85 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~----Gl~~p~~~-------------~~ 145 (239)
T PLN02267 85 PLVADLISLPMPTIAAVTGHASAAGFILALSH--DYVLMRKDRGVLYMSEVDI----GLPLPDYF-------------MA 145 (239)
T ss_pred HHHHHHhcCCCCEEEEECCcchHHHHHHHHHC--CEEEecCCCCeEecccccc----CCCCChHH-------------HH
Confidence 35667888999999999999999999999999 5799985 45665532221 221 2210 01
Q ss_pred HHHHHhCCCHHHH-HhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 115 LLAKGTGKPKEEI-AKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 115 ~~a~~tg~~~~~i-~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
.+.++.|.+ .. .+++-....|+++||+++||||+|.++.+++.+
T Consensus 146 ~l~~~vG~~--~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~ 190 (239)
T PLN02267 146 LLRAKIGSP--AARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVE 190 (239)
T ss_pred HHHHHcChH--HHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence 122223321 22 355666788999999999999999976555544
No 81
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=1.9e-05 Score=64.90 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=67.5
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a 117 (167)
++..|+.++.||.+.+.|.|.+.|.-+.++| +-|++.+++.|.+....++. ..+..-. . .+.
T Consensus 94 ~~~~~~~~~kpvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl----~p~~g~~----~--------~l~ 155 (262)
T PRK07509 94 VSLGWRRLPVPVIAALEGVCFGGGLQIALGA--DIRIAAPDTKLSIMEAKWGL----VPDMAGT----V--------SLR 155 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeecchHHHHHhC--CEEEecCCCEeecchhccCC----CCCchHH----H--------HHH
Confidence 3455678999999999999999999999999 57999999988775443222 1111100 0 011
Q ss_pred HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.. ......+++-....++++||+++||||+|.+.
T Consensus 156 ~~~--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 156 GLV--RKDVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred HHh--CHHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 111 22334555566778999999999999999854
No 82
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.09 E-value=2.1e-05 Score=65.12 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~ 87 (167)
.-||.-.+||||.--. ..|.-|...........+-..+.|+.++++|.|.|.|++.+..+ +..++.|++.+.+-.|.
T Consensus 98 ~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe 175 (256)
T PRK12319 98 GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPE 175 (256)
T ss_pred CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHH
Confidence 4699999999993211 01111222222333344445578999999999999999988777 57899999988886665
Q ss_pred ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+ +..+ .++. ....++..+.+ -++|.++.+.|+||+|++..
T Consensus 176 -~-----~a~i--l~~~----------------~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 176 -G-----FASI--LWKD----------------GSRATEAAELM----KITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred -H-----HHHH--HhcC----------------cccHHHHHHHc----CCCHHHHHHCCCCcEecCCC
Confidence 2 1111 1110 01222223333 35999999999999999754
No 83
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=5e-05 Score=62.23 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++ -..+..-. ..|
T Consensus 84 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G----l~p~~g~~-~~l---------- 146 (257)
T PRK07658 84 QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC--HIRFATESAKLGLPELNLG----LIPGFAGT-QRL---------- 146 (257)
T ss_pred HHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhC--CEEEecCCCcccCcccccC----CCCCCcHH-HHH----------
Confidence 346778889999999999999999999999999 5799999998766332222 11111100 001
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| ...-.+++-....++++||+++||||+|.++
T Consensus 147 -~~~vG--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (257)
T PRK07658 147 -PRYVG--KAKALEMMLTSEPITGAEALKWGLVNGVFPE 182 (257)
T ss_pred -HHHhC--HHHHHHHHHcCCCcCHHHHHHcCCcCeecCh
Confidence 11112 2233455556778999999999999999864
No 84
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.08 E-value=1.8e-05 Score=69.46 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCCCCC-CCCCCCHHHHHHHHHH---HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001 9 SKPIYLYINSSGTQNEK-KESVGAETDAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~~-~~~~G~v~~g~aI~~~---i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH 84 (167)
.-||.-+|||||.--.. .|-.|. +.+|... |-..+.|+.+++.|.+.|.|++.+++| +..++.|+|.+.+-
T Consensus 221 ~lPIVtLVDTpGA~pG~~AEe~Gq---a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a--D~VlMle~A~ysVi 295 (431)
T PLN03230 221 GFPILTFVDTPGAYAGIKAEELGQ---GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG--NRMLMMENAVYYVA 295 (431)
T ss_pred CCCEEEEEeCCCcCCCHHHHHHhH---HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC--CEEEEecCCEEEec
Confidence 46999999999932111 111122 2344444 456678999999999999999988877 47889999988776
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.|. + -+ . +.++.-.+ .++..+ ..-+||+++++.|+||+|+...
T Consensus 296 sPE-g----aA-s--ILwkd~~~----------------A~eAAe----alkitA~dL~~~GiID~II~Ep 338 (431)
T PLN03230 296 SPE-A----CA-A--ILWKSAAA----------------APKAAE----ALRITAAELVKLGVVDEIVPEP 338 (431)
T ss_pred CHH-H----HH-H--HHhccccc----------------hHHHHH----HcCCCHHHHHhCCCCeEeccCC
Confidence 664 1 11 1 11110000 011111 2268999999999999999743
No 85
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.08 E-value=3.4e-05 Score=63.58 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=69.3
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a 117 (167)
++..|+.++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...+ |-..+.. ... +.
T Consensus 92 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~pe~~~----Gl~p~~g--~~~-----------~~ 152 (262)
T PRK07468 92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVC--DVAIAVSGARFGLTETRL----GLIPATI--SPY-----------VV 152 (262)
T ss_pred HHHHHHcCCCCEEEEECCEEEhHHHHHHHhC--CEEEEeCCCEEeCchhcc----CCCcccc--hhh-----------HH
Confidence 6778899999999999999999999999999 579999999776633222 2221210 000 11
Q ss_pred HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+ .......+++-...-++++||+++||||+|.+..
T Consensus 153 ~~--vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 153 AR--MGEANARRVFMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred hh--ccHHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 11 2233445666778899999999999999998753
No 86
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.07 E-value=2.7e-05 Score=64.04 Aligned_cols=98 Identities=16% Similarity=0.044 Sum_probs=67.3
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a 117 (167)
++..|..++.||.+.+.|.|.+.|+-++++| +-|++.++++|.+-...+ |-..+..-.. .| .
T Consensus 91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----G~~p~~g~~~-~l-----------~ 152 (262)
T PRK08140 91 LVRRLRALPLPVIAAVNGVAAGAGANLALAC--DIVLAARSASFIQAFVKI----GLVPDSGGTW-FL-----------P 152 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeehhHHHHHHhC--CEEEecCCCEEecccccc----CCCCCccHHH-HH-----------H
Confidence 5667888999999999999999999999999 579999999887533222 2211110000 01 1
Q ss_pred HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+.- ......+++-...-++++||+++||||+|.+..
T Consensus 153 ~~v--G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 153 RLV--GMARALGLALLGEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred HHh--CHHHHHHHHHcCCCcCHHHHHHcCCccEeeChH
Confidence 111 122334455567779999999999999998754
No 87
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.07 E-value=1.1e-05 Score=68.61 Aligned_cols=117 Identities=22% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~ 87 (167)
.-||.-++||||.--+ ..|-.|..........++-..+.|+.+++.|.|+|.|++.+..+ +..++.|++.+.+-.|.
T Consensus 151 ~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a--D~v~m~~~a~~sVisPE 228 (316)
T TIGR00513 151 KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG--DKVNMLEYSTYSVISPE 228 (316)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC--CEEEEecCceEEecCHH
Confidence 4699999999993211 11112222223333344456679999999999999999877656 57899999998887665
Q ss_pred ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+ -++=+ ++.- . ..++..+. .-++|+++++.|+||.|++..
T Consensus 229 -g----~a~Il---~kd~-----~-----------~a~~aae~----~~~ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 229 -G----CAAIL---WKDA-----S-----------KAPKAAEA----MKITAPDLKELGLIDSIIPEP 268 (316)
T ss_pred -H----HHHHh---ccch-----h-----------hHHHHHHH----ccCCHHHHHHCCCCeEeccCC
Confidence 2 11111 1110 0 01222222 335799999999999999744
No 88
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.06 E-value=5e-05 Score=62.40 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+=.+.++... ..... .. +
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~G~~~---~~~~~--~~-----------l 146 (256)
T TIGR03210 85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTIC--DLTIASEKAQFGQVGPKVGSVD---PGYGT--AL-----------L 146 (256)
T ss_pred HHHHHHHhCCCCEEEEECCEEehhhHHHHHhC--CEEEEeCCCEEecccccccccC---CccHH--HH-----------H
Confidence 46778889999999999999999999999999 5799999998877333322110 11000 00 1
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| ...-.+++-....|+|+||+++||||+|.+.
T Consensus 147 ~~~vG--~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~ 182 (256)
T TIGR03210 147 ARVVG--EKKAREIWYLCRRYTAQEALAMGLVNAVVPH 182 (256)
T ss_pred HHHhC--HHHHHHHHHhCCCcCHHHHHHcCCceeeeCH
Confidence 11112 1222333444667999999999999999875
No 89
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.05 E-value=3.1e-05 Score=64.83 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=67.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|+.++.||.+.+.|.|.+.|.-|+++| +-|++.+++.|.+=...++ ..| ..... + .
T Consensus 109 ~~~~~l~~~pkPvIAaVnG~a~GgG~~lalac--D~ria~e~a~f~~pe~~lG-l~~----~~~~~--l---~------- 169 (288)
T PRK08290 109 GMCRRWRDLPKPTIAQVQGACIAGGLMLAWVC--DLIVASDDAFFSDPVVRMG-IPG----VEYFA--H---P------- 169 (288)
T ss_pred HHHHHHHhCCCCEEEEECCEeeHHHHHHHHhC--CEEEeeCCCEecCcccccC-cCc----chHHH--H---H-------
Confidence 34567888999999999999999999999999 5799999998876322222 211 11000 0 0
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
... ......+++-....++|+||+++||||+|++.
T Consensus 170 -~~i--G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~ 204 (288)
T PRK08290 170 -WEL--GPRKAKELLFTGDRLTADEAHRLGMVNRVVPR 204 (288)
T ss_pred -HHh--hHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 011 23344555666778999999999999999875
No 90
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.05 E-value=5.2e-05 Score=62.69 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=66.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-+.++| +-|++.++++|.+ |.. ..|-..+..... .+-+
T Consensus 97 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~--pe~--~~Gl~p~~g~~~-~l~~--------- 160 (268)
T PRK07327 97 DLVYNVINCDKPIVSAIHGPAVGAGLVAALLA--DISIAAKDARIID--GHT--RLGVAAGDHAAI-VWPL--------- 160 (268)
T ss_pred HHHHHHHcCCCCEEEEEcCeeeehhhHHHHhC--CEEEecCCCEEeC--ccc--ccCCCCCcchhh-HHHH---------
Confidence 35566778899999999999999999999999 5799999998765 431 112111110000 0100
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
.. ......+++-....|+|+||+++||||+|.++ +++.
T Consensus 161 --~v--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~ 198 (268)
T PRK07327 161 --LC--GMAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELL 198 (268)
T ss_pred --Hh--CHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHH
Confidence 01 11222334445667999999999999999864 3443
No 91
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.04 E-value=3.7e-05 Score=63.84 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=67.3
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...++..- .+.... ..+
T Consensus 100 ~~~~~l~~~~kPvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~Gl~p---~~~g~~------------~~l 162 (276)
T PRK05864 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRAAGINNGLTA---SELGLS------------YLL 162 (276)
T ss_pred HHHHHHHhCCCCEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecCcccccCCCC---CCcchh------------eeh
Confidence 45667888999999999999999999999999 5799999998876333222110 011000 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....++++||+++||||+|.++.
T Consensus 163 ~~~vG--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 163 PRAIG--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred HhhhC--HHHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 12222 23334444455568999999999999998753
No 92
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.04 E-value=2e-05 Score=67.20 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~ 87 (167)
+-||.-.++|||.--+ ..|--|....+......+-..+.|+.++++|.+.|.|++.+..+ +..++.|+|.+.+-.|.
T Consensus 151 ~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a--D~v~m~~~A~~svisPE 228 (319)
T PRK05724 151 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG--DRVLMLEYSTYSVISPE 228 (319)
T ss_pred CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc--CeeeeecCceEeecCHH
Confidence 4699999999993211 11111333333444555557779999999999999999887776 57899999988776664
Q ss_pred ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+ -++=+ ++. . ...++..+ ..-+||+++++.|+||+|+...
T Consensus 229 -g----~a~Il---~~~---------------~-~~a~~aae----~~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 229 -G----CASIL---WKD---------------A-SKAPEAAE----AMKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred -H----HHHHH---hcC---------------c-hhHHHHHH----HcCCCHHHHHHCCCceEeccCC
Confidence 2 11111 110 0 11222222 2337999999999999999743
No 93
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.03 E-value=3.8e-05 Score=62.95 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|..+++++ +-|++.+++.|.+ |.. .-|-..+..-.. .+
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~--D~ria~~~a~f~~--pe~--~~Gl~p~~g~~~------------~l 150 (255)
T PRK07260 89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAA--DFCIASTKTKFIQ--AFV--GVGLAPDAGGLF------------LL 150 (255)
T ss_pred HHHHHHHcCCCCEEEEecCeeehhhHHHHHhC--CEEEEeCCCEEec--hHh--hcCCCCCCchhh------------hh
Confidence 45667888999999999999999999999999 4799999998765 431 112211110000 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+.- ......+++-....++++||+++||||+|.++
T Consensus 151 ~~~v--g~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~ 186 (255)
T PRK07260 151 TRAI--GLNRATHLAMTGEALTAEKALEYGFVYRVAES 186 (255)
T ss_pred HHhh--CHHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 1111 22334556666789999999999999999865
No 94
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.02 E-value=0.00013 Score=59.55 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=68.2
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
..++..|..++.||.+.+.|.|.+.|.-+.++| +-|++.++++|.+ |.. ..|-..+.. ....
T Consensus 76 ~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~--pe~--~~G~~p~~g------------~~~~ 137 (243)
T PRK07854 76 IEMLHAIDAAPVPVIAAINGPAIGAGLQLAMAC--DLRVVAPEAYFQF--PVA--KYGIALDNW------------TIRR 137 (243)
T ss_pred HHHHHHHHhCCCCEEEEecCcccccHHHHHHhC--CEEEEcCCCEEec--ccc--ccccCCCcc------------HHHH
Confidence 456777889999999999999999999999999 5799999998765 442 123221210 0011
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeC
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIID 153 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~ 153 (167)
+.+..| .....+++-....++++||+++||||+|.+
T Consensus 138 l~~~~G--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 138 LSSLVG--GGRARAMLLGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HHHHhC--HHHHHHHHHcCCCcCHHHHHHCCCcccccC
Confidence 122222 233345556678899999999999999954
No 95
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.02 E-value=3.2e-05 Score=63.65 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=66.8
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCc--CChhHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
++..|..++.||.+.+.|.|.+.|+-++++| +.|++.++++|-+....++..- |...-+
T Consensus 90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl~p~~g~~~~L----------------- 150 (260)
T PRK07659 90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTA--DYVIADISAKLAMNFIGIGLIPDGGGHFFL----------------- 150 (260)
T ss_pred HHHHHHhCCCCEEEEecCceecHHHHHHHhC--CEEEEcCCCEEcCchhhcCCCCCCchhhhH-----------------
Confidence 4556778899999999999999999999999 5799999998776444322211 111111
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~ 152 (167)
.+. .......+++-....|+++||+++||||+|.
T Consensus 151 -~~~--vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 151 -QKR--VGENKAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred -HHh--cCHHHHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 111 1234445556667889999999999999998
No 96
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.00 E-value=3.4e-05 Score=65.77 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHH---HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~---i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH 84 (167)
.-||.-.++|||.--+ ..|-.| .+.+|... +...+.|+.+++.|.+.|.|++.+..+ +..++.|+|.+.+-
T Consensus 154 ~lPIItlvDTpGA~~G~~AE~~G---~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a--D~V~m~e~a~~sVi 228 (322)
T CHL00198 154 GLPILTFIDTPGAWAGVKAEKLG---QGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG--DSIMMLEYAVYTVA 228 (322)
T ss_pred CCCEEEEEeCCCcCcCHHHHHHh---HHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC--CeEEEeCCeEEEec
Confidence 4699999999993211 000011 13345444 456779999999999999999877766 57899999998887
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.|. + -++=+ ++.-.+. .+.. +-.-+||++.+++|+||+|+...
T Consensus 229 sPE-g----~a~Il---~~d~~~a----------------~~aA----~~~~ita~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 229 TPE-A----CAAIL---WKDSKKS----------------LDAA----EALKITSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred CHH-H----HHHHH---hcchhhH----------------HHHH----HHcCCCHHHHHhCCCCeEeccCC
Confidence 775 2 11111 1110000 1111 22348899999999999999743
No 97
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.00 E-value=4.2e-05 Score=62.78 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcC---CCeEEEEccccccHHHHHHhcCCCCceeeecCCceee
Q 031001 8 ASKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCK---SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKL 83 (167)
Q Consensus 8 ~~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~---~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~mi 83 (167)
.+.||...+++||--.+ ..|..|....+-.+...+.... .|+.+++.|.+.|.|.+-+..+ .+..++.|++.+..
T Consensus 65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~-ad~v~Alp~A~i~v 143 (238)
T TIGR03134 65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQ-ADRIIALPGAMVHV 143 (238)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccC-cCeEEEcCCcEEEe
Confidence 57899999999994433 3445556666665556666554 9999999999999888776432 36789999997766
Q ss_pred ecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhC--CCccccHHHHHHcCcceEEeCCch
Q 031001 84 YLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQ--RPKYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 84 H~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~--~~~~lsa~EA~e~GliD~I~~~~~ 156 (167)
-.|. + +.. +.. ++.++..+..+ +.+-.+++.+.+.|+||+|+++.+
T Consensus 144 m~~e-~-----aa~--I~~-------------------~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 144 MDLE-S-----MAR--VTK-------------------RSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred cCHH-H-----HHH--HHc-------------------cCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 5553 1 111 111 22222322222 235567889999999999998654
No 98
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.99 E-value=7.2e-05 Score=61.19 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.+++.|.+..+.++.. .+..-. ..+
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~~~~~~Gl~----p~~g~~-~~l----------- 141 (248)
T PRK06072 80 PIIREIRFSDKIYISAINGVTAGACIGIALST--DFKFASRDVKFVTAFQRLGLA----SDTGVA-YFL----------- 141 (248)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhC--CEEEEcCCCEEecchhhcCcC----CCchHH-HHH-----------
Confidence 45667788899999999999999999999999 579999999987644433222 111100 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEE
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKI 151 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I 151 (167)
.+..| . ...+++-....++|+||+++||||++
T Consensus 142 ~~~~g--~-~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 142 LKLTG--Q-RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred HHHhh--H-HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 11112 1 12233434556899999999999965
No 99
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.99 E-value=3.6e-05 Score=64.77 Aligned_cols=94 Identities=10% Similarity=-0.086 Sum_probs=68.9
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLA 117 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a 117 (167)
.+..|..++.||.+.+.|.|.+.|.-+.++| +-|++.++++|.+-...+ .|-.... -.+
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~A~f~~pe~~l---~G~~~~~----~~~------------ 162 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCA--DIVIASDDAVIGTPYSRM---WGAYLTG----MWL------------ 162 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHC--CEEEEcCCcEEecccccc---ccCCchh----HHH------------
Confidence 4566888999999999999999999999999 579999999887733332 1211100 000
Q ss_pred HHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 118 KGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 118 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+ .......+++-....++|+||+++||||+|+++
T Consensus 163 ~~--vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~ 197 (298)
T PRK12478 163 YR--LSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF 197 (298)
T ss_pred HH--hhHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 11 134455667777889999999999999999875
No 100
>PRK08788 enoyl-CoA hydratase; Validated
Probab=97.98 E-value=8.4e-05 Score=62.45 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=63.7
Q ss_pred hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001 44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 123 (167)
Q Consensus 44 ~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~ 123 (167)
.++.||.+.+.|.|.+.|+-++++| +-|++.++++|.+ |.. ..|-..+..- ...+.+..|
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~--pev--~lGl~p~~g~------------~~~l~~~vG-- 178 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSH--HTIIAERGAKMGF--PEI--LFNLFPGMGA------------YSFLARRVG-- 178 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEeeC--chh--hhCcCCCchH------------HHHHHHHhh--
Confidence 5789999999999999999999999 5799999987665 442 1232222110 011222222
Q ss_pred HHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.....+++-....|+++||+++||||+|.++.
T Consensus 179 ~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 179 PKLAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 23345556667789999999999999998754
No 101
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=2e-05 Score=64.50 Aligned_cols=96 Identities=18% Similarity=0.102 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
..+..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+....++..-+-..- . .+
T Consensus 86 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G~~p~~g~~------~----------~l 147 (249)
T PRK05870 86 DGFLAVASCPLPTIAAVNGAAVGAGLNLALAA--DVRIAGPKALFDARFQKLGLHPGGGAT------W----------ML 147 (249)
T ss_pred HHHHHHHhCCCCEEEEECCEeEchhHHHHHhC--CEEEEcCCCEEeCcccccCcCCCCcce------e----------eH
Confidence 34556778899999999999999999999999 579999999887644433222111000 0 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~ 152 (167)
.+.. ......+++-....++++||+++||||+|.
T Consensus 148 ~~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 148 QRAV--GPQVARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred Hhhh--CHHHHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 1111 223334445556689999999999999998
No 102
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=8.1e-05 Score=62.61 Aligned_cols=95 Identities=9% Similarity=-0.024 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|+-++++| +-|++.+++.|.+ |.. ...|-+... . +
T Consensus 118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~~ias~~a~f~~--pe~-~~gg~~~~~------------~----~ 176 (302)
T PRK08272 118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHC--DQVIAADDAKIGY--PPT-RVWGVPATG------------M----W 176 (302)
T ss_pred HHHHHHHhCCCCEEEEEccEeehhhHHHHHhC--CEEEEeCCCEecC--cch-hcccCChHH------------H----H
Confidence 45677889999999999999999999999999 5799999997755 441 112222110 0 1
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.... ......+++-....++++||+++||||+|+++
T Consensus 177 ~~~v--G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~ 212 (302)
T PRK08272 177 AYRL--GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP 212 (302)
T ss_pred HHHh--hHHHHHHHHHcCCccCHHHHHHcCCCceecCH
Confidence 1112 33444566777889999999999999999864
No 103
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=97.96 E-value=9.6e-05 Score=60.66 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=68.7
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-+.++| +-|++.++++|.+-...+ |-..... .. .+
T Consensus 80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~~----Gl~p~~~--~~-----------~l 140 (251)
T TIGR03189 80 KLVIAMLDSPVPILVAVRGQCLGGGLEVAAAG--NLMFAAPDAKLGQPEIVL----GVFAPAA--SC-----------LL 140 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeeeeHHHHHHHhC--CEEEEcCCCEEeCchhhc----CCCCCch--HH-----------HH
Confidence 45667888999999999999999999999999 579999999876632222 2211110 00 11
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-...-++++||+++||||+|.++.
T Consensus 141 ~~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~ 177 (251)
T TIGR03189 141 PERMG--RVAAEDLLYSGRSIDGAEGARIGLANAVAEDP 177 (251)
T ss_pred HHHhC--HHHHHHHHHcCCCCCHHHHHHCCCcceecCcH
Confidence 22222 23345556666779999999999999998753
No 104
>PLN02600 enoyl-CoA hydratase
Probab=97.96 E-value=0.00011 Score=60.22 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=67.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-+.+++ +-|++.++++|.+ |.. ..|-..+..- ... +
T Consensus 79 ~~~~~l~~~~kPvIAav~G~a~GgG~~lala~--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~----~~~--------l 140 (251)
T PLN02600 79 STFSSLEALSIPTIAVVEGAALGGGLELALSC--DLRICGEEAVFGL--PET--GLAIIPGAGG----TQR--------L 140 (251)
T ss_pred HHHHHHHhCCCCEEEEecCeecchhHHHHHhC--CEEEeeCCCEEeC--ccc--ccCcCCCchH----HHH--------H
Confidence 35667788899999999999999999999999 5799999998877 432 1122111100 000 1
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+.. ....-.+++-....++++||+++||||+|.++.
T Consensus 141 ~~~~--G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 177 (251)
T PLN02600 141 PRLV--GRSRAKELIFTGRRIGAREAASMGLVNYCVPAG 177 (251)
T ss_pred HHHh--CHHHHHHHHHhCCccCHHHHHHcCCCcEeeChh
Confidence 1111 122234445556779999999999999998754
No 105
>PRK08321 naphthoate synthase; Validated
Probab=97.92 E-value=0.00013 Score=61.42 Aligned_cols=97 Identities=19% Similarity=0.134 Sum_probs=66.3
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeee-cCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~-p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
+...|..++.||.+.+.|.|.+.|.-|+++| +-|++. ++++|.+-...++...+-..- ..+
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~Gl~p~~~~~----------------~~L 188 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVC--DLTLASREHARFKQTDADVGSFDGGYGS----------------AYL 188 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhC--CEEEEecCCCEEECCccccccCCCchHH----------------HHH
Confidence 4566788899999999999999999999999 479998 588876633322211111000 001
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| .....+++-....++|+||+++||||+|.++
T Consensus 189 ~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~ 224 (302)
T PRK08321 189 ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH 224 (302)
T ss_pred HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence 11122 2233455556778999999999999999975
No 106
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.92 E-value=9.5e-05 Score=63.95 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=68.2
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCC-hhHHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP-VTDMWRKAKDLEANAESYIE 114 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~-~~dl~~~~~~l~~~~~~~~~ 114 (167)
..+++.|..++.||.+.+.|.|.+.|.-|.++| +-|++.++++|-+-.+.++..-+- ... .|-+
T Consensus 114 ~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaC--DlrIAse~A~Fg~PE~rlGl~P~~Ggt~------rLpr------- 178 (360)
T TIGR03200 114 NDMVSAILGCDKPVICRVNGMRIGGGQEIGMAA--DFTIAQDLANFGQAGPKHGSAPIGGATD------FLPL------- 178 (360)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhC--CEEEEcCCCEEeCchhccCCCCCccHHH------HHHH-------
Confidence 356778889999999999999999999999999 579999999887744443222111 111 0111
Q ss_pred HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCch
Q 031001 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQD 156 (167)
Q Consensus 115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~ 156 (167)
..| ......++-....++|+||+++||||+|.++.+
T Consensus 179 ----lvG--~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~ 214 (360)
T TIGR03200 179 ----MIG--CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALK 214 (360)
T ss_pred ----hhC--HHHHHHHHHhCCcCcHHHHHHcCChheecCchh
Confidence 011 111222233456899999999999999987644
No 107
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.92 E-value=8.2e-05 Score=61.49 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=69.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+ |.. ..|-..+.. ...+
T Consensus 92 ~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~--D~~ia~~~a~f~~--pe~--~~Gi~p~~~--~~~l----------- 152 (265)
T PRK05674 92 ELMYNLYRLKIPTLAVVQGAAFGGALGLISCC--DMAIGADDAQFCL--SEV--RIGLAPAVI--SPFV----------- 152 (265)
T ss_pred HHHHHHHcCCCCEEEEEcCEEEechhhHhhhc--CEEEEeCCCEEeC--ccc--ccCCCcchh--HHHH-----------
Confidence 45667788899999999999999999999999 5799999998877 542 123222221 0011
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHH
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAY 159 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~ 159 (167)
.+..| .....+++-...-|+++||+++||||+|.+. +++.
T Consensus 153 ~~~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~ 192 (265)
T PRK05674 153 VKAIG--ERAARRYALTAERFDGRRARELGLLAESYPA-AELE 192 (265)
T ss_pred HHHhC--HHHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHH
Confidence 11112 2233344445667999999999999999874 4443
No 108
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.90 E-value=7.5e-05 Score=61.50 Aligned_cols=94 Identities=12% Similarity=0.002 Sum_probs=65.4
Q ss_pred HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 031001 42 MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTG 121 (167)
Q Consensus 42 i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg 121 (167)
+..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+-...+ |-..+..... . +.+..
T Consensus 96 ~~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g~~~-~-----------l~r~v- 156 (263)
T PRK07799 96 GRRLTKPLIAAVEGPAIAGGTEILQGT--DIRVAGESAKFGISEAKW----SLFPMGGSAV-R-----------LVRQI- 156 (263)
T ss_pred HhcCCCCEEEEECCeEeccHHHHHHhC--CEEEecCCCEecCccccc----CcCCCccHHH-H-----------HHHHh-
Confidence 467889999999999999999999999 579999999876633332 2211111000 0 11111
Q ss_pred CCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 122 KPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 122 ~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
......+++-....|+++||+++||||+|.++.
T Consensus 157 -G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (263)
T PRK07799 157 -PYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG 189 (263)
T ss_pred -CHHHHHHHHHcCCCCCHHHHHHcCCccEecCcc
Confidence 233345566667789999999999999998764
No 109
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.87 E-value=4.9e-05 Score=63.35 Aligned_cols=101 Identities=23% Similarity=0.205 Sum_probs=76.6
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccC--CcCChhHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGR--SSGPVTDMWRKAKDLEANAESYI 113 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~--~~G~~~dl~~~~~~l~~~~~~~~ 113 (167)
+..++.+..++.||.+-+.|.|.+.|+-+.+.|| -|++.|+|.|++-++.++. .+|-..-+..
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCD--irva~~~Akfg~~~~~~Gi~p~~GGT~rl~r------------- 181 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCD--IRVAGEGAKFGFFEIRMGIIPSWGGTQRLPR------------- 181 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhcc--eEeccCCCeecccccccCCccCCCchhhHHH-------------
Confidence 4456677788999999999999999999999995 6999999999998877542 2333322211
Q ss_pred HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHH
Q 031001 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAA 158 (167)
Q Consensus 114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~ 158 (167)
+ ..+..-.+++-....++|+||++.|||++|.+..+.+
T Consensus 182 -~------vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l 219 (290)
T KOG1680|consen 182 -I------VGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDAL 219 (290)
T ss_pred -H------hChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHH
Confidence 1 1233345667778899999999999999999877644
No 110
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=97.83 E-value=0.00012 Score=60.24 Aligned_cols=97 Identities=18% Similarity=0.074 Sum_probs=63.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.+++.|.+=...+ |-..+.... ..+.+ +..
T Consensus 92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~----Gl~p~~g~~-~~l~~----l~~-- 158 (260)
T PRK07827 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGAC--DIVVAGPESTFALTEARI----GVAPAIISL-TLLPR----LSP-- 158 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCeeecchhhHHHhC--CEEEEcCCCEEeCccccc----CCCCCcccc-hhHHh----hhH--
Confidence 45667788899999999999999999999999 579999999776632222 222121100 00100 000
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
....+++-....++|+||+++||||+|.+.
T Consensus 159 --------~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 188 (260)
T PRK07827 159 --------RAAARYYLTGEKFGAAEAARIGLVTAAADD 188 (260)
T ss_pred --------HHHHHHHHhCCccCHHHHHHcCCcccchHH
Confidence 011223334566899999999999999643
No 111
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.82 E-value=8e-05 Score=69.17 Aligned_cols=117 Identities=18% Similarity=0.138 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~ 87 (167)
.-||.-+|+|||.--+ ..|-.|...+......++-....|+.++++|.|+|.|++.++.+ +..++.|++.+.+-.|.
T Consensus 242 gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a--D~VlMle~A~~sVisPE 319 (762)
T PLN03229 242 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA--NKLLMLENAVFYVASPE 319 (762)
T ss_pred CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC--CEEEEecCCeEEecCHH
Confidence 4699999999994321 12222333333333444446679999999999999999988777 56888999887665554
Q ss_pred ccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 88 VGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 88 ~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+ -..+.++.-. ...+..+ -.-+||++-+++|+||.|+...
T Consensus 320 -g-------aAsILwkd~~----------------~A~eAAe----~lkiTa~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 320 -A-------CAAILWKSAK----------------AAPKAAE----KLRITAQELCRLQIADGIIPEP 359 (762)
T ss_pred -H-------HHHHHhcCcc----------------cHHHHHH----HcCCCHHHHHhCCCCeeeccCC
Confidence 1 1111111111 1111122 2348899999999999999743
No 112
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.79 E-value=0.00014 Score=66.20 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC--CceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~--s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
+.+.|+.++.||.+.+.|.|.+.|..+.++| +.|++.++ ++|.+ |.. ...|-..+.... ..
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALac--D~rIas~~~~a~fg~--pEv-~~~Gl~P~~gg~-~r----------- 177 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALAC--DEIVLVDDRSSAVSL--PEV-PLLGVLPGTGGL-TR----------- 177 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc--cch-hccccCCCcchH-HH-----------
Confidence 4566778899999999999999999999999 57999987 55544 432 112222121100 00
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHh
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYE 160 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~ 160 (167)
+............+++-....|+++||+++||||+|.++. ++.+
T Consensus 178 l~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d-~l~~ 221 (550)
T PRK08184 178 VTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPS-KFDA 221 (550)
T ss_pred hhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH-HHHH
Confidence 1111112233334445567789999999999999999753 4443
No 113
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.78 E-value=0.00012 Score=60.17 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=63.4
Q ss_pred hcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 031001 44 YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKP 123 (167)
Q Consensus 44 ~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~ 123 (167)
.++.||.+.+.|.|.+.|.-++++| +.|++.++++|.+-...+ |-.....- . ..+.+..|
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~----Gl~p~~g~----~--------~~l~~~iG-- 150 (254)
T PRK08259 91 RLSKPVIAAVSGYAVAGGLELALWC--DLRVAEEDAVFGVFCRRW----GVPLIDGG----T--------VRLPRLIG-- 150 (254)
T ss_pred cCCCCEEEEECCEEEhHHHHHHHhC--CEEEecCCCEecCccccc----CCCCCccH----H--------HHHHHHhC--
Confidence 5789999999999999999999999 579999999876532222 21111000 0 00111222
Q ss_pred HHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 124 KEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 124 ~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
...-.+++-....|+++||+++||||+|++..
T Consensus 151 ~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 151 HSRAMDLILTGRPVDADEALAIGLANRVVPKG 182 (254)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCEeeChh
Confidence 33445556667789999999999999998754
No 114
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.67 E-value=0.00038 Score=57.08 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=63.9
Q ss_pred hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 031001 43 AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGK 122 (167)
Q Consensus 43 ~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~ 122 (167)
..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+ |.. ..|-..+..-. ..+.+..|
T Consensus 88 ~~~~kPvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~--pe~--~~Gl~p~~g~~------------~~l~~~vg- 148 (254)
T PRK08252 88 RPPRKPLIAAVEGYALAGGFELALAC--DLIVAARDAKFGL--PEV--KRGLVAAGGGL------------LRLPRRIP- 148 (254)
T ss_pred hcCCCCEEEEECCEEehHHHHHHHhC--CEEEEeCCCEEeC--chh--hcCCCCCchHH------------HHHHHHcC-
Confidence 35789999999999999999999999 5799999998765 432 12322221100 00111122
Q ss_pred CHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 123 PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 123 ~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
...-.+++-...-++++||+++||||+|.++.
T Consensus 149 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 180 (254)
T PRK08252 149 -YHIAMELALTGDMLTAERAHELGLVNRLTEPG 180 (254)
T ss_pred -HHHHHHHHHcCCccCHHHHHHcCCcceecCcc
Confidence 23345555567789999999999999998754
No 115
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.62 E-value=0.00059 Score=63.90 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
.++..|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+=...+ |-..+..-.. .|
T Consensus 93 ~~~~~i~~~~kPvIAav~G~a~GgG~~LAlac--D~ria~~~a~f~~pe~~l----Gl~p~~g~~~-~L----------- 154 (715)
T PRK11730 93 SIFNRLEDLPVPTVAAINGYALGGGCECVLAT--DYRVASPDARIGLPETKL----GIMPGFGGTV-RL----------- 154 (715)
T ss_pred HHHHHHHcCCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEeCchhhc----CCCCCchHHH-HH-----------
Confidence 45677888999999999999999999999999 579999999877633322 2211111000 01
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+..| .....+++-....++|+||+++||||+|.+..
T Consensus 155 ~rlvG--~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 155 PRLIG--ADNALEWIAAGKDVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred HHhcC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHH
Confidence 11112 22334555567789999999999999998653
No 116
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.61 E-value=0.00041 Score=64.87 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC--ceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE 114 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s--~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~ 114 (167)
.+++.|..++.||.+.+.|.|.+.|.-++++| +.|++.+++ +|.+....++..-|-..- .
T Consensus 92 ~~~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~a~fg~pe~~lGl~p~~gg~----------------~ 153 (708)
T PRK11154 92 QLFAEIEALPIPVVAAIHGACLGGGLELALAC--HYRVCTDDPKTVLGLPEVQLGLLPGSGGT----------------Q 153 (708)
T ss_pred HHHHHHHhCCCCEEEEECCeeechHHHHHHhC--CEEEEeCCCCceEeCccccCCCCCCccHH----------------h
Confidence 46788899999999999999999999999999 579999986 454433332221111100 0
Q ss_pred HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.+.+..| .....+++-....++|+||+++||||+|++..
T Consensus 154 ~L~r~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 154 RLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred HHHhhcC--HHHHHHHHHhCCcCCHHHHHHCCCCcEecChH
Confidence 1111122 23334566677889999999999999998753
No 117
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.61 E-value=0.00066 Score=63.42 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=67.3
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc--ccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV--VGRSSGPVTDMWRKAKDLEANAESYI 113 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~--~~~~~G~~~dl~~~~~~l~~~~~~~~ 113 (167)
..++..|..++.||.+.+.|.|.+.|.-++++| +.|++.+++...+..|. ++..-+...-
T Consensus 86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLac--D~ria~~~~~a~fg~pev~lGl~p~~g~~---------------- 147 (699)
T TIGR02440 86 QVLFAELEALPIPVVAAIHGACLGGGLELALAC--HSRVCSDDDKTVLGLPEVQLGLLPGSGGT---------------- 147 (699)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCcEEechhhcccCCCCccHH----------------
Confidence 446778999999999999999999999999999 57999987433333343 2211111100
Q ss_pred HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
..+.+..| ...-.+++-....++++||+++||||+|.++.
T Consensus 148 ~~L~r~vG--~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 148 QRLPRLIG--VSTALDMILTGKQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred HHHHHhcC--HHHHHHHHHcCCcCCHHHHHhCCCCcEecChh
Confidence 00111111 22234555567789999999999999999764
No 118
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=97.56 E-value=0.00024 Score=60.94 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCC--cCChhHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRS--SGPVTDMWRKAKDLEANAESYIE 114 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~--~G~~~dl~~~~~~l~~~~~~~~~ 114 (167)
.++..|..++.||.+.+.|.|.++|+-+.++| +-|++.++++|.+=...++.. .|...-+. .+
T Consensus 91 ~~~~~i~~~~kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lGl~P~~g~~~~L~----r~--------- 155 (342)
T PRK05617 91 RLNALIARYPKPYIALMDGIVMGGGVGISAHG--SHRIVTERTKMAMPETGIGFFPDVGGTYFLS----RA--------- 155 (342)
T ss_pred HHHHHHHhCCCCEEEEEcCEEEccHhHHhhhC--CEEEEcCCCEeeCCccccCcCCCccceeEeh----hc---------
Confidence 35567888999999999999999999999999 579999999887633332221 11111110 00
Q ss_pred HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
-| ..-.+++-....++|+||+++||||+|+++.
T Consensus 156 -----~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 156 -----PG---ALGTYLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred -----cc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 00 0112333446679999999999999998753
No 119
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.56 E-value=0.00087 Score=62.81 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHH
Q 031001 35 AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIE 114 (167)
Q Consensus 35 g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~ 114 (167)
+..+++.|..++.||.+.+.|.|.+.|.-++++| +.|++.++++|.+=...++..-|-..-. .|
T Consensus 91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalac--D~ria~~~a~fglPEv~lGl~Pg~Ggt~-----rL--------- 154 (714)
T TIGR02437 91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT--DFRIADDTAKIGLPETKLGIMPGFGGTV-----RL--------- 154 (714)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhC--CEEEEeCCCEEecchhhcCCCCCccHHH-----HH---------
Confidence 4467888999999999999999999999999999 5899999998877333322211111000 01
Q ss_pred HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 115 LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 115 ~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.+..| ...-.+++-....++|+||+++||||+|.+.
T Consensus 155 --~rliG--~~~A~~llltG~~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 155 --PRVIG--ADNALEWIASGKENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred --HHHhC--HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence 11112 1222444556777999999999999999864
No 120
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.53 E-value=0.00071 Score=58.92 Aligned_cols=95 Identities=19% Similarity=0.092 Sum_probs=64.2
Q ss_pred HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001 39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK 118 (167)
Q Consensus 39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~ 118 (167)
...|..++.||.+.+.|.|.+.|.-++++| +-|++.++++|.+=...+ |-..+..... .|.+.
T Consensus 98 ~~~i~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~i----Gl~p~~g~~~-~L~rl---------- 160 (379)
T PLN02874 98 CYHIHTYKKTQVALVHGLVMGGGAGLMVPM--KFRVVTEKTVFATPEASV----GFHTDCGFSY-ILSRL---------- 160 (379)
T ss_pred HHHHHhCCCCEEEEecCeEEecHHHHHHhC--CeEEEeCCeEEecccccc----CcCCChhHHH-HHHhh----------
Confidence 345778899999999999999999999999 579999999876633322 3222221100 11111
Q ss_pred HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
.|. .-..++-....++++||+++||||+|+++
T Consensus 161 -~g~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 161 -PGH---LGEYLALTGARLNGKEMVACGLATHFVPS 192 (379)
T ss_pred -hHH---HHHHHHHcCCcccHHHHHHcCCccEEeCH
Confidence 010 01123445667999999999999999875
No 121
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.47 E-value=0.00087 Score=61.06 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=63.6
Q ss_pred HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC--CceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN--SSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIEL 115 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~--s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~ 115 (167)
+...|+.++.||.+.+.|.|.+.|.-+.++| +-|++.++ ++|.+ |... ..|-.....- ...+
T Consensus 111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALac--D~rvAs~~a~a~f~~--pEv~-~lGl~P~~gg-~~~l---------- 174 (546)
T TIGR03222 111 IEDSSRHSGLKFLAAVNGTCAGGGYELALAC--DEIMLVDDRSSSVSL--PEVP-LLGVLPGTGG-LTRV---------- 174 (546)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhC--CEEEEecCCCcEEEc--cchh-ccCcCCccch-hhhc----------
Confidence 5566778999999999999999999999999 57999986 44444 5421 1222211110 0001
Q ss_pred HHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 116 LAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 116 ~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
............+++-...-++++||+++||||+|.++.
T Consensus 175 -~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 213 (546)
T TIGR03222 175 -TDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPS 213 (546)
T ss_pred -cccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChH
Confidence 000001122223334456679999999999999998753
No 122
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.42 E-value=0.0011 Score=58.27 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=65.1
Q ss_pred HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001 39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK 118 (167)
Q Consensus 39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~ 118 (167)
...|..++.||.+.+.|.|.+.|.-|.++| +-|++.++++|.+=...+ |-..++.-. -.|.+.
T Consensus 126 ~~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~~i----Gl~Pd~G~s-~~L~rl---------- 188 (401)
T PLN02157 126 IYLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPETII----GFHPDAGAS-FNLSHL---------- 188 (401)
T ss_pred HHHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhhhc----CCCCCccHH-HHHHHh----------
Confidence 345788899999999999999999999999 479999999876633322 322222110 011111
Q ss_pred HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.|. .-..++-....|+++||+++||+|+++++.
T Consensus 189 -~G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 189 -PGR---LGEYLGLTGLKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred -hhH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence 110 112333456789999999999999999764
No 123
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.41 E-value=0.00088 Score=61.03 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=67.5
Q ss_pred HHHHHhhcCCCeEEEE-ccccccHH-HHHHhcCCCCceee-------ecCCceeeecccccCCc--CChhHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVN-CGMAYGQA-AMLLSVGAKGYRGL-------QPNSSTKLYLPVVGRSS--GPVTDMWRKAKDLE 106 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~-~G~aaS~a-~~i~~ag~~~~R~~-------~p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~ 106 (167)
++..|..++.||.+.+ .|.|.+.| .=++++| +-|++ .|+++|.+-...++-.- |-..-
T Consensus 357 ~~~~l~~~~kpviAav~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~--------- 425 (546)
T TIGR03222 357 TLARLDVSSRSLFALIEPGSCFAGTLAELAFAA--DRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSR--------- 425 (546)
T ss_pred HHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhC--ceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHH---------
Confidence 6778899999999999 89999999 9999998 57999 89998877444432211 11111
Q ss_pred HHHHHHHHHHHHHh-CCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 107 ANAESYIELLAKGT-GKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 107 ~~~~~~~~~~a~~t-g~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+.++. |.+...-.+++-....++++||+++||+++|.++.
T Consensus 426 ---------L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~ 466 (546)
T TIGR03222 426 ---------LATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDI 466 (546)
T ss_pred ---------HHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence 12222 33222222233456779999999999999997653
No 124
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.37 E-value=0.00047 Score=63.07 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL 85 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~ 85 (167)
.-|+...+|+||...+ ..|--|.+..+-.++.++.....|+.|+++|.+++.|.+.+++. ..+..++.|++.+.+-.
T Consensus 401 ~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~vmg 480 (569)
T PLN02820 401 GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPNARIGVMG 480 (569)
T ss_pred CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCCCeEEecC
Confidence 4689999999996532 33444778888889999999999999999999999998877643 22456667777666544
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
|. + +..+- +..++.+..+...+.-.+....-.+++.+.. +...+|-.|-+.|+||.||++.
T Consensus 481 ~e-~-----aa~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~aa~~~~vD~VIdP~ 541 (569)
T PLN02820 481 GA-Q-----AAGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAY--EREANPYYSTARLWDDGVIDPA 541 (569)
T ss_pred HH-H-----HHHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHH--HHhCCHHHHHHcCCcCcccCHH
Confidence 43 1 11211 1223322111110000000000011222222 2366889999999999999875
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.33 E-value=0.0035 Score=58.98 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC--ceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS--STKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI 113 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s--~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~ 113 (167)
..++..|..++.||.+.+.|.|.+.|.-++++| +.|++.+++ +|.+....++..-|-..- ..
T Consensus 98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALac--D~ria~~~a~a~fglpEv~lGl~Pg~Ggt-----~r--------- 161 (737)
T TIGR02441 98 QEMFERIEKSQKPIVAAISGSCLGGGLELALAC--HYRIATKDRKTLLGLPEVMLGLLPGAGGT-----QR--------- 161 (737)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhC--CEEEEcCCCCCeEecchhhhCCCCCccHh-----hh---------
Confidence 457888999999999999999999999999999 589999985 444432222211111000 00
Q ss_pred HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+.+..| ...-.+++-....++++||+++||||+|.++
T Consensus 162 --LprliG--~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 162 --LPKLTG--VPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred --HHHhhC--HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 111112 1222345556788999999999999999986
No 126
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.30 E-value=0.00019 Score=58.78 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHH
Q 031001 34 DAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYI 113 (167)
Q Consensus 34 ~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~ 113 (167)
....-|..|..++.||.+-+-|-|-++|.=+..+|+ -||+...+.|.+...-+ |-+.|+. .|+++-+.+
T Consensus 114 ~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEVDv----glaADvG----TL~RlpkvV- 182 (292)
T KOG1681|consen 114 RYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEVDV----GLAADVG----TLNRLPKVV- 182 (292)
T ss_pred HHHHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeeeee----ehhhchh----hHhhhhHHh-
Confidence 345567888899999999999999999999988885 69999999998876543 5555653 333332211
Q ss_pred HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhh
Q 031001 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEK 161 (167)
Q Consensus 114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~ 161 (167)
| +.....++....+-|+|.||++.||+.+|.++.+++++.
T Consensus 183 -------G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~ 222 (292)
T KOG1681|consen 183 -------G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNG 222 (292)
T ss_pred -------c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhh
Confidence 1 223334445556789999999999999999999887764
No 127
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.27 E-value=0.0033 Score=54.92 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=64.1
Q ss_pred HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001 39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK 118 (167)
Q Consensus 39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~ 118 (167)
...|..++.||.+.+.|.|.+.|.-|.++| +-|++.++++|.+ |.. ..|-..++.- .-.|.++-... .
T Consensus 98 ~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~m--PE~--~iGl~Pd~G~-s~~L~rl~G~~-~---- 165 (381)
T PLN02988 98 NYVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAM--PET--ALGLFPDVGA-SYFLSRLPGFF-G---- 165 (381)
T ss_pred HHHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeC--hhh--hcCcCCCccH-HHHHHHHHHHH-H----
Confidence 346778999999999999999999999999 5799999997765 431 1232222211 01121111110 1
Q ss_pred HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
..++-....++++||++.||+|+++++.
T Consensus 166 ---------~~l~LTG~~i~a~eA~~~GLv~~vv~~~ 193 (381)
T PLN02988 166 ---------EYVGLTGARLDGAEMLACGLATHFVPST 193 (381)
T ss_pred ---------HHHHHcCCCCCHHHHHHcCCceEecCHh
Confidence 1234446689999999999999998753
No 128
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.22 E-value=0.00088 Score=60.59 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC--CCCceeeecCCceeeec
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG--AKGYRGLQPNSSTKLYL 85 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag--~~~~R~~~p~s~~miH~ 85 (167)
.-||...+||||...+ ..|--|.+..+-.++.++.....|..+++.|.++|.|.+.+++. ..+..++.|++.+.+-.
T Consensus 350 ~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~ 429 (512)
T TIGR01117 350 NIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMG 429 (512)
T ss_pred CCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecC
Confidence 5699999999994211 22222466777788888888889999999999999877665431 13567888998887766
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
|. + +..+. +.+++.+..+. .+. -.+++.+.. +.+.+|..+.+.|+||.|+++.
T Consensus 430 pe-~-----a~~i~-~~~~l~~~~~~-~~~-------~~~~~~~~~--~~~~~~~~~a~~g~vD~VI~P~ 482 (512)
T TIGR01117 430 PA-G-----AANII-FRKDIKEAKDP-AAT-------RKQKIAEYR--EEFANPYKAAARGYVDDVIEPK 482 (512)
T ss_pred HH-H-----HHHHH-hhhhcccccCH-HHH-------HHHHHHHHH--HhhcCHHHHHhcCCCCeeEChH
Confidence 65 2 11111 11222111100 000 001111111 2366889999999999999875
No 129
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.14 E-value=0.0017 Score=54.64 Aligned_cols=114 Identities=25% Similarity=0.286 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHH---HHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeee
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIAD---AMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLY 84 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~---~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH 84 (167)
.-||..+|++||---+ ..|--|. +-+|.- .|-.++.|+.+++.|-..|.|++-+..| ++.+++.||++.+=
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ---~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~va--d~V~mle~s~ySVi 224 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVA--DRVLMLENSTYSVI 224 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhccc---HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHH--HHHHHHHhceeeec
Confidence 4699999999992211 1222233 334443 3446678999999999999999988888 46788999999887
Q ss_pred cccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 85 LPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 85 ~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.|. + -++=+ +++-.+..+ -++ .| -++|+.-+++||||.|+...
T Consensus 225 sPE-G----~AsIL---WkD~~ka~e-----AAe-----------~m----kita~dLk~lgiID~II~Ep 267 (317)
T COG0825 225 SPE-G----CASIL---WKDASKAKE-----AAE-----------AM----KITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred Chh-h----hhhhh---hcChhhhHH-----HHH-----------Hc----CCCHHHHHhCCCcceeccCC
Confidence 775 2 22222 111111111 111 11 26788889999999999753
No 130
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.10 E-value=0.0057 Score=53.92 Aligned_cols=96 Identities=14% Similarity=-0.015 Sum_probs=64.4
Q ss_pred HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 031001 39 ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAK 118 (167)
Q Consensus 39 ~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~ 118 (167)
...|..++.|+.+.+.|.|.+.|.-|.++| +-|++.++++|.+=...+ |-..++.-.. .|.++-... .
T Consensus 131 ~~~i~~~pKPvIA~v~G~amGGG~gLal~~--D~rVate~a~famPE~~i----Gl~PdvG~s~-~L~rl~g~~-g---- 198 (407)
T PLN02851 131 VYLQGTYLKPNVAIMDGITMGCGAGISIPG--MFRVVTDKTVFAHPEVQM----GFHPDAGASY-YLSRLPGYL-G---- 198 (407)
T ss_pred HHHHHhCCCCEEEEEcCEEeeHHHHHHHhC--CEEEEeCCceEecchhcc----CCCCCccHHH-HHHHhcCHH-H----
Confidence 345667889999999999999999999998 479999999877633332 2222321100 122211111 1
Q ss_pred HhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 119 GTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 119 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
..++-.+..++++||+++||+|+++++.
T Consensus 199 ---------~~L~LTG~~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 199 ---------EYLALTGQKLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred ---------HHHHHhCCcCCHHHHHHCCCceeecCHh
Confidence 1233456789999999999999999765
No 131
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.01 E-value=0.0031 Score=57.51 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=64.1
Q ss_pred HHHHHhhcCCCeEEEEc-cccccHH-HHHHhcCCCCceeee-------cCCceeeecccccCCc--CChhHHHHHHHHHH
Q 031001 38 IADAMAYCKSKVYTVNC-GMAYGQA-AMLLSVGAKGYRGLQ-------PNSSTKLYLPVVGRSS--GPVTDMWRKAKDLE 106 (167)
Q Consensus 38 I~~~i~~~~~~V~t~~~-G~aaS~a-~~i~~ag~~~~R~~~-------p~s~~miH~p~~~~~~--G~~~dl~~~~~~l~ 106 (167)
++..|..++.||.+.+. |.|.+.| .-++++| +-|++. |+++|.+-...++-.- |-..-+
T Consensus 361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalac--D~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L-------- 430 (550)
T PRK08184 361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAA--DRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRL-------- 430 (550)
T ss_pred HHHHHHhCCCCEEEEECCCceehhHHHHHHHHC--ChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHh--------
Confidence 56678888999999996 9999999 8898988 479999 9998877444332211 111111
Q ss_pred HHHHHHHHHHHHH-hCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 107 ANAESYIELLAKG-TGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 107 ~~~~~~~~~~a~~-tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.++ -|.....-..++-....++++||+++|||++|.++.
T Consensus 431 ----------~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~ 470 (550)
T PRK08184 431 ----------ARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDI 470 (550)
T ss_pred ----------HHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence 111 111111000011246689999999999999998754
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.75 E-value=0.0043 Score=55.78 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCC--CCceeeecCCceeeec
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGA--KGYRGLQPNSSTKLYL 85 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~--~~~R~~~p~s~~miH~ 85 (167)
+-||....|+||--.+ ..|--|.+..+-.+.+++...+.|+.|++.|.+.|.|.+.+.+.. .+..++.|++.+.+..
T Consensus 329 ~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~vm~ 408 (493)
T PF01039_consen 329 NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGVMG 408 (493)
T ss_dssp T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEESS-
T ss_pred CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeeecC
Confidence 4599999999995533 344447788899999999999999999999999998876655541 2356777888777655
Q ss_pred ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHhhhC--CCccccHHHHHHcCcceEEeCCc
Q 031001 86 PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEE-IAKDIQ--RPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 86 p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~-i~~~~~--~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
|. + +..+ .+.+++.+.... +.++++ ..+.++ .+...++..|.+.|++|.|+++.
T Consensus 409 ~e-~-----a~~i-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~ 465 (493)
T PF01039_consen 409 PE-G-----AASI-LYRDELEAAEAE---------GADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPA 465 (493)
T ss_dssp HH-H-----HHHH-HTHHHHHHSCHC---------CHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGG
T ss_pred hh-h-----hhee-eehhhhhhhhcc---------cchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHH
Confidence 54 2 1121 011122111100 000000 111111 12346789999999999999874
No 133
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=95.67 E-value=0.13 Score=43.60 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCHHHHHH-------HHHH---HhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecC
Q 031001 9 SKPIYLYINSSGTQNEKKESVGAETDAYA-------IADA---MAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN 78 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~a-------I~~~---i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~ 78 (167)
.-|+.....|+| ....+|.. +..+ +.....|..+++.|-+++.++..++... +-.++.|+
T Consensus 156 ~lPlV~l~dsgG---------armqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~-D~iia~p~ 225 (292)
T PRK05654 156 KCPLVIFSASGG---------ARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG-DIIIAEPK 225 (292)
T ss_pred CCCEEEEEcCCC---------cchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC-CEEEEecC
Confidence 468899999999 55555542 2222 3344589999999999988777665522 46788888
Q ss_pred Cceeeecc
Q 031001 79 SSTKLYLP 86 (167)
Q Consensus 79 s~~miH~p 86 (167)
+.+.+--|
T Consensus 226 A~ig~aGp 233 (292)
T PRK05654 226 ALIGFAGP 233 (292)
T ss_pred cEEEecCH
Confidence 87766444
No 134
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=95.42 E-value=0.14 Score=43.25 Aligned_cols=101 Identities=13% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCHHHHHHH-------H---HHHhhcCCCeEEEEccccccHHHHHHh-cCCCCceeeec
Q 031001 9 SKPIYLYINSSGTQNEKKESVGAETDAYAI-------A---DAMAYCKSKVYTVNCGMAYGQAAMLLS-VGAKGYRGLQP 77 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~aI-------~---~~i~~~~~~V~t~~~G~aaS~a~~i~~-ag~~~~R~~~p 77 (167)
.-|+....+|+| ..+.++... . ..+.....|..+++.|-+++.++..++ .+ +-.++.|
T Consensus 155 ~lPlV~l~dSgG---------aRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~--D~iia~p 223 (285)
T TIGR00515 155 NCPLIIFSASGG---------ARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG--DLNIAEP 223 (285)
T ss_pred CCCEEEEEcCCC---------cccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC--CEEEEEC
Confidence 459999999999 454444322 2 223334589999999999988777664 55 4678888
Q ss_pred CCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
++.+.+--|. + +...++ +.+. +-+-+|+-+.+.|+||.|++..
T Consensus 224 ~A~ig~aGpr----------V-----------------ie~ti~-------e~lp-e~~q~ae~~~~~G~vD~iv~~~ 266 (285)
T TIGR00515 224 KALIGFAGPR----------V-----------------IEQTVR-------EKLP-EGFQTSEFLLEHGAIDMIVHRP 266 (285)
T ss_pred CeEEEcCCHH----------H-----------------HHHHhc-------Cccc-hhcCCHHHHHhCCCCcEEECcH
Confidence 9877664332 1 111222 1122 3356778788999999998764
No 135
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.23 E-value=0.15 Score=41.81 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=47.4
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHH----------HHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceee
Q 031001 6 DNASKPIYLYINSSGTQNEKKESVGAETDAYAI----------ADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGL 75 (167)
Q Consensus 6 ~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI----------~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~ 75 (167)
+.+..||.+.+++|| |.. |.-++.+-| |+.-|....||.+.+.|.|.|.|.+- .+--.++-++
T Consensus 61 ~~~krpIv~lVD~~s-Qa~-----grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA-~GlqA~rl~A 133 (234)
T PF06833_consen 61 SGPKRPIVALVDVPS-QAY-----GRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLA-HGLQANRLIA 133 (234)
T ss_pred cCCCCCEEEEEeCCc-ccc-----chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHH-HHHHhcchhc
Confidence 456789999999999 432 444444444 44556667899999999999977543 3322245577
Q ss_pred ecCCceeee
Q 031001 76 QPNSSTKLY 84 (167)
Q Consensus 76 ~p~s~~miH 84 (167)
+|.+ |+|
T Consensus 134 L~ga--~i~ 140 (234)
T PF06833_consen 134 LPGA--MIH 140 (234)
T ss_pred CCCC--eee
Confidence 7844 666
No 136
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=94.73 E-value=0.039 Score=44.76 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 37 AIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 37 aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
-+.+.||.++.||.+-+.|.|+-+|+-+.++|+ --++.++|.|..--.-++-+-.+ ..+. |.+.--+=+.+|
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~tPG~~vGlFCST-PGvA-----laRavpRkva~~ 187 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFSTPGAGVGLFCST-PGVA-----LARAVPRKVAAY 187 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCccccCCCCceeeEecC-cchh-----HhhhcchhHHHH
Confidence 467889999999999999999999999888885 45777888775521111111111 1221 222222334556
Q ss_pred HHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 117 AKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 117 a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
.-.||.| .+++||+--|++.+|++..
T Consensus 188 ML~Tg~P-------------i~~eeAl~sGlvskvVp~~ 213 (287)
T KOG1682|consen 188 MLMTGLP-------------ITGEEALISGLVSKVVPAE 213 (287)
T ss_pred HHHhCCC-------------CchHHHHHhhhhhhcCCHH
Confidence 6667766 4789999999999998764
No 137
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=94.24 E-value=0.092 Score=47.72 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcC
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVG 68 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag 68 (167)
+-||....|.||...+ +-|-.|-+--|-.|+.++-....|..|++.|.+.++|.+.+.+.
T Consensus 359 ~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~ 419 (526)
T COG4799 359 NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGK 419 (526)
T ss_pred CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCc
Confidence 3589999999997744 66666888999999999999999999999999999888765543
No 138
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=93.57 E-value=0.1 Score=42.78 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccccCCcCC--hhHHHHHHHHHHHHHHHHH
Q 031001 36 YAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVVGRSSGP--VTDMWRKAKDLEANAESYI 113 (167)
Q Consensus 36 ~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~~~~~G~--~~dl~~~~~~l~~~~~~~~ 113 (167)
+.+--.||.++.||.+.|.|.|.+.|-.+-+.|+- -.+..|+.|----|.++.+.|- +..+. +
T Consensus 106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs~yla-------r------ 170 (282)
T COG0447 106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGSSYLA-------R------ 170 (282)
T ss_pred hhHHHHHHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccHHHHH-------H------
Confidence 44455789999999999999999999999888864 4778899888888887655432 12221 1
Q ss_pred HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCC
Q 031001 114 ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDS 154 (167)
Q Consensus 114 ~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~ 154 (167)
+ -|. ++-++.+-=-+..+|+||++.|++..|++.
T Consensus 171 -~----VGq--KkArEIwfLcR~Y~A~eal~MGlVN~Vvp~ 204 (282)
T COG0447 171 -I----VGQ--KKAREIWFLCRQYDAEEALDMGLVNTVVPH 204 (282)
T ss_pred -H----hhh--hhhHHhhhhhhhccHHHHHhcCceeeeccH
Confidence 1 111 111122222345799999999999999764
No 139
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=92.67 E-value=0.47 Score=39.86 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCHHHHH-------HHHHHHhhcC--CCeEEEEccc--cccHHHHHHhcCCCCceeeecC
Q 031001 10 KPIYLYINSSGTQNEKKESVGAETDAY-------AIADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN 78 (167)
Q Consensus 10 ~~I~l~INS~G~~~~~~~~~G~v~~g~-------aI~~~i~~~~--~~V~t~~~G~--aaS~a~~i~~ag~~~~R~~~p~ 78 (167)
-|+.+.+.|.| +.+.++. .++..+...+ .|+.+++.|- |++.++++.+.+ +..++.|.
T Consensus 100 ~PvV~l~dSgG---------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~--D~vim~~~ 168 (274)
T TIGR03133 100 TAVVLLLDTGG---------VRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC--SYLIMTEE 168 (274)
T ss_pred CCEEEEEcCCC---------cChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcC--CEEEEeCC
Confidence 48999999999 6665543 2333333333 7999999999 788888777777 57889999
Q ss_pred Cceeeecccc
Q 031001 79 SSTKLYLPVV 88 (167)
Q Consensus 79 s~~miH~p~~ 88 (167)
+++.+--|.+
T Consensus 169 a~i~~aGP~V 178 (274)
T TIGR03133 169 GRLGLSGPEV 178 (274)
T ss_pred cEEeccCHHH
Confidence 9888776653
No 140
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=92.17 E-value=0.46 Score=40.42 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCCCCCCCCCCCCHHHHH-------HHHHHHhhcC--CCeEEEEccc--cccHHHHHHhcCCCCceeeecC
Q 031001 10 KPIYLYINSSGTQNEKKESVGAETDAY-------AIADAMAYCK--SKVYTVNCGM--AYGQAAMLLSVGAKGYRGLQPN 78 (167)
Q Consensus 10 ~~I~l~INS~G~~~~~~~~~G~v~~g~-------aI~~~i~~~~--~~V~t~~~G~--aaS~a~~i~~ag~~~~R~~~p~ 78 (167)
.|+.+.+.|.| +.+.++. .++..+..++ .|+.+++.|- |++.+++.++.+ +..++.|+
T Consensus 109 ~PvV~l~dSGG---------aRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc~GG~a~~a~l~--D~iIm~~~ 177 (301)
T PRK07189 109 TAVLLLFETGG---------VRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAALC--SYLIVSEE 177 (301)
T ss_pred CCEEEEecCCC---------cCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCcHHHHHHHhcC--CEEEEECC
Confidence 58999999999 5554332 2343333333 7999999998 888888887777 57899999
Q ss_pred Cceeeeccc
Q 031001 79 SSTKLYLPV 87 (167)
Q Consensus 79 s~~miH~p~ 87 (167)
+++.+--|.
T Consensus 178 a~iglaGP~ 186 (301)
T PRK07189 178 GRLGLSGPE 186 (301)
T ss_pred cEEeccCHH
Confidence 988777664
No 141
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=91.17 E-value=0.25 Score=40.50 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeecccc---cCCcCChhHHHHHHHHHHHHH
Q 031001 33 TDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPVV---GRSSGPVTDMWRKAKDLEANA 109 (167)
Q Consensus 33 ~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~~---~~~~G~~~dl~~~~~~l~~~~ 109 (167)
..-..+++.|..++.||.+-+.|.|.+.|-=++++|| -|.+..++.+.+-.-.+ .+..|+ .-+ -
T Consensus 111 ~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACD--iRva~s~akmGLvET~laiiPGaGGt-QRL----------p 177 (291)
T KOG1679|consen 111 NGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACD--IRVAASSAKMGLVETKLAIIPGAGGT-QRL----------P 177 (291)
T ss_pred HHHHHHHHHHHhCCccceehhcchhcccchhhhhhcc--ceehhhhccccccccceeeecCCCcc-chh----------H
Confidence 3445688889999999999999999999999999995 68999998887654332 122232 111 1
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEeCCc
Q 031001 110 ESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQ 155 (167)
Q Consensus 110 ~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~ 155 (167)
+.+ ....-++++...+.|++.||...|+|.++++.+
T Consensus 178 R~v----------g~alaKELIftarvl~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 178 RIV----------GVALAKELIFTARVLNGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred HHH----------hHHHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence 111 111223445667889999999999999999876
No 142
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=89.45 E-value=0.4 Score=39.89 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=73.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCH--------HH-------HHH----HHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCc
Q 031001 12 IYLYINSSGTQNEKKESVGAE--------TD-------AYA----IADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGY 72 (167)
Q Consensus 12 I~l~INS~G~~~~~~~~~G~v--------~~-------g~a----I~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~ 72 (167)
....+.|.|.-.+.|-.+... .+ ... ..+++-.++.|+.+.+.|-|-+.|+.|+.-+| -
T Consensus 54 ~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD--~ 131 (266)
T KOG0016|consen 54 SITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCD--Y 131 (266)
T ss_pred EEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhh--e
Confidence 566667777655555444222 11 112 57788889999999999999999999988885 3
Q ss_pred eeeecCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceEEe
Q 031001 73 RGLQPNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADKII 152 (167)
Q Consensus 73 R~~~p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~I~ 152 (167)
.++. -..-+|.|. . .-|+..|--.... +-+.. ....-.++|--..-|+|+||.+.|||++|.
T Consensus 132 V~A~--Dka~F~TPf-a-~lGq~PEG~Ss~t------------~p~im--G~~~A~E~ll~~~kltA~Ea~~~glVskif 193 (266)
T KOG0016|consen 132 VWAS--DKAWFQTPF-A-KLGQSPEGCSSVT------------LPKIM--GSASANEMLLFGEKLTAQEACEKGLVSKIF 193 (266)
T ss_pred EEec--cceEEeccc-h-hcCCCCCcceeee------------ehHhh--chhhHHHHHHhCCcccHHHHHhcCchhhhc
Confidence 4555 444667786 2 2243322100000 00000 111112223335568999999999999998
Q ss_pred CC
Q 031001 153 DS 154 (167)
Q Consensus 153 ~~ 154 (167)
..
T Consensus 194 ~~ 195 (266)
T KOG0016|consen 194 PA 195 (266)
T ss_pred Ch
Confidence 76
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=74.02 E-value=13 Score=34.33 Aligned_cols=76 Identities=13% Similarity=0.054 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCCC-CCCCCCCCHHHHHHHHHH-Hhh--cCCCeEEEEccccccHHHHHHhcCCCCceeee-cCCceee
Q 031001 9 SKPIYLYINSSGTQN-EKKESVGAETDAYAIADA-MAY--CKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQ-PNSSTKL 83 (167)
Q Consensus 9 ~~~I~l~INS~G~~~-~~~~~~G~v~~g~aI~~~-i~~--~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~-p~s~~mi 83 (167)
.-|+...++|+|.-- +..+.++.....-.|+.. -+. ...|..++++|.|++.++++++.++ ..++. +++.+.+
T Consensus 164 ~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D--~vim~~~~a~i~~ 241 (569)
T PLN02820 164 RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPAMAD--ESVIVKGNGTIFL 241 (569)
T ss_pred CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHHhCC--ceEEecCCcEEEe
Confidence 468999999999211 111122111111234433 332 3479999999999999999887774 55665 4676766
Q ss_pred ecc
Q 031001 84 YLP 86 (167)
Q Consensus 84 H~p 86 (167)
--|
T Consensus 242 aGP 244 (569)
T PLN02820 242 AGP 244 (569)
T ss_pred cCH
Confidence 655
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=68.41 E-value=15 Score=33.49 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCHHHHH-------HHH-HHH-hhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCC
Q 031001 9 SKPIYLYINSSGTQNEKKESVGAETDAY-------AIA-DAM-AYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNS 79 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~-------aI~-~~i-~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s 79 (167)
.-|+..++.|.| +.+.++. .++ ... .+-..|..+++.|-|++.+++.++.+ +..++.|++
T Consensus 117 ~lPlV~l~dSgG---------arm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~--D~vim~~~~ 185 (512)
T TIGR01117 117 GAPVVGLNDSGG---------ARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALT--DFIYMVDNT 185 (512)
T ss_pred CCCEEEEecCCC---------CCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhc--CceEEeccc
Confidence 468989999999 4432221 122 222 22347999999999999999988877 578999974
Q ss_pred -ceeeeccc
Q 031001 80 -STKLYLPV 87 (167)
Q Consensus 80 -~~miH~p~ 87 (167)
.+.+--|.
T Consensus 186 a~i~~aGP~ 194 (512)
T TIGR01117 186 SQMFITGPQ 194 (512)
T ss_pred eEEEecChH
Confidence 56665454
No 145
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=67.36 E-value=18 Score=30.79 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCHHHHH-----------HHHHHHhhcCCCeEEEEccccccHHHHHHhc-CCCCceeee
Q 031001 9 SKPIYLYINSSGTQNEKKESVGAETDAY-----------AIADAMAYCKSKVYTVNCGMAYGQAAMLLSV-GAKGYRGLQ 76 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~-----------aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~a-g~~~~R~~~ 76 (167)
.-|+.+...|.| +.+.+|. ++....+.-..|..+++.|-+++.++..++. |+ -.++.
T Consensus 168 rlPlV~l~~SGG---------ARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l~D--iiiae 236 (296)
T CHL00174 168 SLPLIIVCASGG---------ARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGMLGD--IIIAE 236 (296)
T ss_pred CCCEEEEECCCC---------ccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHccc--EEEEe
Confidence 468999999998 4444433 1222122445799999999888877777665 64 56777
Q ss_pred cCCceeeeccc
Q 031001 77 PNSSTKLYLPV 87 (167)
Q Consensus 77 p~s~~miH~p~ 87 (167)
|++.+.+--|.
T Consensus 237 ~~A~IgfAGPr 247 (296)
T CHL00174 237 PNAYIAFAGKR 247 (296)
T ss_pred CCeEEEeeCHH
Confidence 88876665443
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=63.63 E-value=12 Score=33.67 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=45.2
Q ss_pred CCeEEEEcCCCCCCCCCCCCC--CHHHHH-------HHHHHHh--hcCCCeEEEEccccccHHHHHHhcCCCCceeeecC
Q 031001 10 KPIYLYINSSGTQNEKKESVG--AETDAY-------AIADAMA--YCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN 78 (167)
Q Consensus 10 ~~I~l~INS~G~~~~~~~~~G--~v~~g~-------aI~~~i~--~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~ 78 (167)
-|+..+++|.| + .+.+++ .++..+. +-..|+.+++.|.|.+.+++.+..+ +..++.+.
T Consensus 93 ~P~v~l~dsgG---------a~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~~~--d~~i~~~~ 161 (493)
T PF01039_consen 93 LPLVYLVDSGG---------AFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAALS--DFVIMVKG 161 (493)
T ss_dssp EEEEEEEEESS---------BCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHHHS--SEEEEETT
T ss_pred CCcEEeccccc---------cccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhccccc--CccccCcc
Confidence 47888889999 4 222222 2222222 1257999999999999888888887 46777886
Q ss_pred -Cceeeeccc
Q 031001 79 -SSTKLYLPV 87 (167)
Q Consensus 79 -s~~miH~p~ 87 (167)
+.+.+.-|.
T Consensus 162 ~a~i~l~GP~ 171 (493)
T PF01039_consen 162 TARIFLAGPR 171 (493)
T ss_dssp TCEEESSTHH
T ss_pred ceEEEecccc
Confidence 888777664
No 147
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=58.39 E-value=22 Score=21.29 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHc
Q 031001 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVY 145 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~ 145 (167)
..-+++.+|.+...+.++.......+.+.+..+
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~i 44 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKKI 44 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHH
Confidence 356899999999999999999999999887653
No 148
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=58.34 E-value=17 Score=23.63 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCC-CHHHHHhhhCCCccccHHHHHHcCcceEEeCCchHHHhhhc
Q 031001 111 SYIELLAKGTGK-PKEEIAKDIQRPKYMQAKEAIVYGLADKIIDSQDAAYEKRV 163 (167)
Q Consensus 111 ~~~~~~a~~tg~-~~~~i~~~~~~~~~lsa~EA~e~GliD~I~~~~~~~~~~~~ 163 (167)
.+++-+.+-+|. |.++|.+++. +..|+|.||++- |+.. ++-.++-.||+
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~qr-LL~q--D~FheVk~krd 56 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQR-LLSQ--DPFHEVKSKRD 56 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHHH-HHhc--CcHHHHHHhhh
Confidence 455667777777 8888887665 889999999875 3332 33455555554
No 149
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=56.09 E-value=31 Score=20.47 Aligned_cols=32 Identities=13% Similarity=-0.057 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCHHHHHhhhCCCccccHHHHHH
Q 031001 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e 144 (167)
.+-+++.+|.+...+.++.....-.+.+++..
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 56789999999999999998776667666543
No 150
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=49.10 E-value=12 Score=22.43 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCCccccHHHHHHcCcceE
Q 031001 132 QRPKYMQAKEAIVYGLADK 150 (167)
Q Consensus 132 ~~~~~lsa~EA~e~GliD~ 150 (167)
.....||-+||++.|+||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3567899999999999996
No 151
>PRK09726 antitoxin HipB; Provisional
Probab=46.54 E-value=58 Score=21.99 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHH
Q 031001 95 VTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEA 142 (167)
Q Consensus 95 ~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA 142 (167)
...+....+.+.+....-.+-+|+++|.+...|.++.......+.+..
T Consensus 10 ~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l 57 (88)
T PRK09726 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTF 57 (88)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHH
Confidence 445555555555444444678999999999999999887666666554
No 152
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=45.36 E-value=98 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCHHHHHhhhCCCccccHHHH
Q 031001 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEA 142 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA 142 (167)
.+.+++.+|.+.+.+.+.+....|.+.++.
T Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 227 VQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 467888999999999999888777776543
No 153
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=45.04 E-value=78 Score=24.94 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEcccc
Q 031001 5 FDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMA 57 (167)
Q Consensus 5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~a 57 (167)
++...+.|.+.+.|+|. -+......+...++..+..|.++.+|-.
T Consensus 103 ~~~~~~rivi~v~S~~~--------~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 103 NKNQKQRIVAFVGSPIE--------EDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred CcCCcceEEEEEecCCc--------CCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 33344699999999983 2233444677778888889999999965
No 154
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=42.27 E-value=62 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCHHHHHhhhCCCccccHH
Q 031001 111 SYIELLAKGTGKPKEEIAKDIQRPKYMQAK 140 (167)
Q Consensus 111 ~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~ 140 (167)
.+.+.+++.+|.+..++.+++... .++++
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G-kit~~ 73 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG-KLTAD 73 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC-CCccc
Confidence 456788999999999999988765 44443
No 155
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=41.84 E-value=42 Score=21.77 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCHHHHHhhhCCC-ccccHHHHH
Q 031001 112 YIELLAKGTGKPKEEIAKDIQRP-KYMQAKEAI 143 (167)
Q Consensus 112 ~~~~~a~~tg~~~~~i~~~~~~~-~~lsa~EA~ 143 (167)
+..-+-++||++++++.+.++.. -.....|.+
T Consensus 5 y~~~Ie~kTGk~~~~W~~~~~~~~~~~k~~e~v 37 (61)
T PF14117_consen 5 YLPNIEKKTGKTLDEWLALAREGGPLTKHGEIV 37 (61)
T ss_pred HHhHhHHHHCcCHHHHHHHHHHhCCCCcHHHHH
Confidence 44557789999999998888765 445555544
No 156
>smart00250 PLEC Plectin repeat.
Probab=40.05 E-value=18 Score=20.70 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.9
Q ss_pred CCccccHHHHHHcCcceEE
Q 031001 133 RPKYMQAKEAIVYGLADKI 151 (167)
Q Consensus 133 ~~~~lsa~EA~e~GliD~I 151 (167)
..--||-.||++-|+||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4566999999999999963
No 157
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=38.24 E-value=63 Score=27.54 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhCCCccc-cHHHHHHcCcceEEe
Q 031001 110 ESYIELLAKGTGKPKEEIAKDIQRPKYM-QAKEAIVYGLADKII 152 (167)
Q Consensus 110 ~~~~~~~a~~tg~~~~~i~~~~~~~~~l-sa~EA~e~GliD~I~ 152 (167)
+...+++++.+|.+++.+.+.+.+..|+ ++++.+.+-.-|.++
T Consensus 226 ~ea~~~~ak~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (328)
T TIGR03427 226 KAALEAMAKASGTDLAGYKAQLKTTKMFYTPKEAVAFTTSPDLP 269 (328)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhhccccCCHHHHHhhhcCccHH
Confidence 4577889999999999999999887764 566666543234433
No 158
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=37.87 E-value=61 Score=27.55 Aligned_cols=47 Identities=23% Similarity=0.175 Sum_probs=39.4
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccc
Q 031001 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAY 58 (167)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aa 58 (167)
||..++.++-|.||+-+.| -.+.++....++.+. +.||..+..|...
T Consensus 199 yl~~Dp~T~~I~ly~E~~G---------~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 199 KFVKDPQTEGIILIGEIGG---------TAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred HHhhCCCCcEEEEEeccCC---------chHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 5667777899999999988 788888888888664 7999999988775
No 159
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=34.55 E-value=1.1e+02 Score=18.76 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHHHHHH
Q 031001 104 DLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (167)
Q Consensus 104 ~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e 144 (167)
++.+.+..=..-+|+.+|.+...+..+....+.++...+..
T Consensus 6 ~~r~~~~lt~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~ 46 (64)
T PF12844_consen 6 ELREEKGLTQKDLAEKLGISRSTISKIENGKRKPSVSTLKK 46 (64)
T ss_dssp HHHHHCT--HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHH
Confidence 34443333455688899999999999998888888777654
No 160
>PRK02866 cyanate hydratase; Validated
Probab=33.46 E-value=85 Score=23.98 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHc
Q 031001 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVY 145 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~ 145 (167)
.+-+|+.+|+|...+.+....-.-+++++|..+
T Consensus 21 w~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kl 53 (147)
T PRK02866 21 WADIAEAIGLSEVWVTAALLGQMTLPAEEAEKV 53 (147)
T ss_pred HHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 467899999999999999999999999999775
No 161
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=33.27 E-value=1.1e+02 Score=25.67 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcC-CCeEEEEccccccHHHHHHhcCCCCceeeecCCceeeeccc
Q 031001 18 SSGTQNEKKESVGAETDAYAIADAMAYCK-SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTKLYLPV 87 (167)
Q Consensus 18 S~G~~~~~~~~~G~v~~g~aI~~~i~~~~-~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~miH~p~ 87 (167)
|+|...++ +...+..+.|+.|+... .+-..++.|...+++..+-+++. .|-+-+-+|.|.
T Consensus 102 S~G~psE~----n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr------~~~~alVL~SPf 162 (258)
T KOG1552|consen 102 SSGKPSER----NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASR------YPLAAVVLHSPF 162 (258)
T ss_pred cCCCcccc----cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhc------CCcceEEEeccc
Confidence 45555555 88899999999999888 46666778888888877777762 123446677776
No 162
>PHA00099 minor capsid protein
Probab=32.74 E-value=2.2e+02 Score=21.50 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcc
Q 031001 95 VTDMWRKAKDLEANAESYI---ELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLA 148 (167)
Q Consensus 95 ~~dl~~~~~~l~~~~~~~~---~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~Gli 148 (167)
.-|.....+-+.+..+.+. .-+.++.|.+++++-+++.++. +-+||+.+||+
T Consensus 60 p~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~--NydEa~~LGl~ 114 (147)
T PHA00099 60 PMDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPE--NYDEAKALGLV 114 (147)
T ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChh--hHHHHHhccee
Confidence 3344433444444444443 3466788999999999998764 34899999999
No 163
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=32.24 E-value=1.6e+02 Score=22.92 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=37.4
Q ss_pred CCCeEEEE-cCCCCCCCCCCCCCCHHHHHHHHHHHhh--------------------------cCCCeEEEEccccccHH
Q 031001 9 SKPIYLYI-NSSGTQNEKKESVGAETDAYAIADAMAY--------------------------CKSKVYTVNCGMAYGQA 61 (167)
Q Consensus 9 ~~~I~l~I-NS~G~~~~~~~~~G~v~~g~aI~~~i~~--------------------------~~~~V~t~~~G~aaS~a 61 (167)
.+.+.|-+ +-+| |++..+..+.+.+-. ...||..++.+..+|+|
T Consensus 89 ~~~lIiDLR~N~G---------G~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaa 159 (224)
T cd06567 89 VKGLILDLRNNPG---------GLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVVLVNEGSASAS 159 (224)
T ss_pred CCEEEEEcCCCCC---------ccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEEEECCCCccHH
Confidence 35555555 5567 899999999888864 23578888888888888
Q ss_pred HHHHhcC
Q 031001 62 AMLLSVG 68 (167)
Q Consensus 62 ~~i~~ag 68 (167)
-+++.+-
T Consensus 160 E~~a~~l 166 (224)
T cd06567 160 EIFAGAL 166 (224)
T ss_pred HHHHHHH
Confidence 8877664
No 164
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=31.92 E-value=96 Score=19.84 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCHHHHHhhhCCCccccHHHHHH
Q 031001 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIV 144 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e 144 (167)
.+-+++.+|.+...|..++.....++.+.+..
T Consensus 21 ~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~ 52 (78)
T TIGR02607 21 IRALAKALGVSRSTLSRIVNGRRGITADMALR 52 (78)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 45688999999999999888777777776543
No 165
>PHA01976 helix-turn-helix protein
Probab=30.80 E-value=1.2e+02 Score=18.81 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCHHHHHhhhCCCccccHHHHH
Q 031001 112 YIELLAKGTGKPKEEIAKDIQRPKYMQAKEAI 143 (167)
Q Consensus 112 ~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~ 143 (167)
=.+-+|+.+|.+...+.++.......+.+...
T Consensus 17 t~~~lA~~~gvs~~~v~~~e~g~~~p~~~~l~ 48 (67)
T PHA01976 17 SAPELSRRAGVRHSLIYDFEADKRLPNLKTLL 48 (67)
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Confidence 34578999999999999888766655555443
No 166
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=30.40 E-value=1.3e+02 Score=18.36 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCHHHHHhhhCCC-ccccHHHH
Q 031001 113 IELLAKGTGKPKEEIAKDIQRP-KYMQAKEA 142 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~-~~lsa~EA 142 (167)
..-+++.+|++...+.++.... ..++.+..
T Consensus 13 ~~~La~~~gis~~tl~~~~~~~~~~~~~~~l 43 (63)
T PF13443_consen 13 QKDLARKTGISRSTLSRILNGKPSNPSLDTL 43 (63)
T ss_dssp HHHHHHHHT--HHHHHHHHTTT-----HHHH
T ss_pred HHHHHHHHCcCHHHHHHHHhcccccccHHHH
Confidence 4567889999999999999876 46666554
No 167
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=28.34 E-value=57 Score=30.44 Aligned_cols=146 Identities=18% Similarity=0.138 Sum_probs=78.0
Q ss_pred CCCCCCCeEEEEcCC--CCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCcee
Q 031001 5 FDNASKPIYLYINSS--GTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSSTK 82 (167)
Q Consensus 5 ~~~~~~~I~l~INS~--G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~~m 82 (167)
.++|+.||.|.+--. |+|-+- | ---+.-++.|..||++..=|.++.-|..--.=+.-++.| +++.. +-
T Consensus 172 ka~P~~pIilq~egGraGGHHSw-e--Dld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTG----eWSt~---~g 241 (717)
T COG4981 172 KANPTFPIILQWEGGRAGGHHSW-E--DLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTG----EWSTA---YG 241 (717)
T ss_pred hcCCCCceEEEEecCccCCccch-h--hcccHHHHHHHHHhcCCCEEEEecCCcCChhhccccccc----chhhh---cC
Confidence 468899999999654 433220 0 122457889999999865554444443322222233344 12221 11
Q ss_pred eec--ccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHh-------------hhCCCcc-ccHHHHHHcC
Q 031001 83 LYL--PVVGRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAK-------------DIQRPKY-MQAKEAIVYG 146 (167)
Q Consensus 83 iH~--p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~-------------~~~~~~~-lsa~EA~e~G 146 (167)
+ + |.-+...|++.-..+.+..-- ...+++....|.+.+++.. .|..|.+ +.-.-+.-..
T Consensus 242 ~-P~MP~DGiLvGtaaMatKEatTSp----~vK~~lv~t~Gvdd~~W~~~g~a~~Gm~s~rSqLgadIheidn~~~~~~r 316 (717)
T COG4981 242 F-PPMPFDGILVGTAAMATKEATTSP----AVKEALVATQGVDDDEWEGTGKAPGGMASVRSQLGADIHEIDNRGAMAGR 316 (717)
T ss_pred C-CCCCcceeEechhHHhhhhccCCH----HHHHHHhhCCCCCchhceecCCCCCceeeehhhhCCcHHhhhhHHHHHHH
Confidence 1 1 221223455544333332222 2345566666666444322 2333433 4445566778
Q ss_pred cceEEeCCchHHHhhhccc
Q 031001 147 LADKIIDSQDAAYEKRVMI 165 (167)
Q Consensus 147 liD~I~~~~~~~~~~~~~~ 165 (167)
++|+++.+...+.++|+++
T Consensus 317 lldev~~d~~a~~arRdeI 335 (717)
T COG4981 317 LLDEVAGDLPAVAARRDEI 335 (717)
T ss_pred HHhhhhcccHHHHHHHHHH
Confidence 9999999888888888765
No 168
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=28.16 E-value=1e+02 Score=21.73 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=18.9
Q ss_pred cCCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHH
Q 031001 77 PNSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELL 116 (167)
Q Consensus 77 p~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~ 116 (167)
|...+-.-||.+..+.=+..|++.+.+.+.+.++++.+++
T Consensus 57 P~~~~~~~QPLc~~~~VT~eDIr~QE~rVk~aR~RLaeAL 96 (96)
T PF14048_consen 57 PGVGLNPPQPLCKQFVVTEEDIRRQERRVKKARKRLAEAL 96 (96)
T ss_dssp ------------T-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333334455533333345899999999999999988753
No 169
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=27.93 E-value=1.9e+02 Score=24.35 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=36.0
Q ss_pred CCCeEEEE-cCCCCCCCCCCCCCCHHHHHHHHHHHhh------------------------cCCCeEEEEccccccHHHH
Q 031001 9 SKPIYLYI-NSSGTQNEKKESVGAETDAYAIADAMAY------------------------CKSKVYTVNCGMAYGQAAM 63 (167)
Q Consensus 9 ~~~I~l~I-NS~G~~~~~~~~~G~v~~g~aI~~~i~~------------------------~~~~V~t~~~G~aaS~a~~ 63 (167)
.+.+.|-+ +.+| |++..+..+.+.+-. ...||..++.+..+|+|-+
T Consensus 181 ~~~lIiDLR~N~G---------G~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~vLvn~~TaSaaE~ 251 (334)
T TIGR00225 181 AKGYILDLRGNPG---------GLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVVLVNRGSASASEI 251 (334)
T ss_pred CceEEEEcCCCCC---------CCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEEEECCCCCcHHHH
Confidence 45666666 5567 899988888887621 2357777777888888877
Q ss_pred HHhcCC
Q 031001 64 LLSVGA 69 (167)
Q Consensus 64 i~~ag~ 69 (167)
++.+-.
T Consensus 252 ~a~~l~ 257 (334)
T TIGR00225 252 FAGALQ 257 (334)
T ss_pred HHHHHH
Confidence 766643
No 170
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=27.79 E-value=87 Score=23.33 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=24.8
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcC--CCeEEEEccc
Q 031001 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK--SKVYTVNCGM 56 (167)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~--~~V~t~~~G~ 56 (167)
||..++..+-|.+|+.+.+ .+.....+++... +||..+-.|.
T Consensus 48 ~~~~D~~t~~I~ly~E~~~-------------d~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 48 YLAEDPDTRVIVLYLEGIG-------------DGRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp HHCT-SS--EEEEEES--S--------------HHHHHHHHHHHCCCS-EEEEE---
T ss_pred HHhcCCCCCEEEEEccCCC-------------CHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5666677889999999887 3566777777655 8999988886
No 171
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.78 E-value=78 Score=16.35 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHhhcC
Q 031001 30 GAETDAYAIADAMAYCK 46 (167)
Q Consensus 30 G~v~~g~aI~~~i~~~~ 46 (167)
|+++.++.+++.|+..+
T Consensus 15 g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 15 GDPDAALQLFDEMKEQG 31 (34)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 89999999999999755
No 172
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=27.09 E-value=55 Score=22.89 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=14.5
Q ss_pred CccccHHHHHHcCcce
Q 031001 134 PKYMQAKEAIVYGLAD 149 (167)
Q Consensus 134 ~~~lsa~EA~e~GliD 149 (167)
..||+++.|.++||.|
T Consensus 36 ~v~in~~dA~~lgi~~ 51 (122)
T cd02791 36 YVEIHPEDAARLGLKE 51 (122)
T ss_pred EEEECHHHHHHcCCCC
Confidence 3899999999999986
No 173
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=26.72 E-value=1.2e+02 Score=26.09 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=34.9
Q ss_pred CcCCCCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccc
Q 031001 2 WLDFDNASKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCKSKVYTVNCGMAY 58 (167)
Q Consensus 2 ~L~~~~~~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aa 58 (167)
||..++.++-|.||+-+.| -...++-+.... ...+.||..+..|..+
T Consensus 218 ~~~~Dp~T~~Ivl~~E~gG---------~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 218 LFLNDPETEGIILIGEIGG---------TAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHhhCCCccEEEEEEecCC---------chhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 4566667789999999888 565666666655 3357899999988765
No 174
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=26.25 E-value=1.1e+02 Score=23.43 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCHHHHHhhhCCCccccHHHHHHc
Q 031001 113 IELLAKGTGKPKEEIAKDIQRPKYMQAKEAIVY 145 (167)
Q Consensus 113 ~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~ 145 (167)
.+-+|+.+|++...+.+.+-+-..+++++|...
T Consensus 24 we~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kl 56 (150)
T TIGR00673 24 FADIADGLGLAEVFVAAALYGQAAAPADEARLV 56 (150)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 567899999999999999999999999999774
No 175
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=26.15 E-value=1.8e+02 Score=19.11 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=21.8
Q ss_pred HHHHHHHHHHH-hCCCHHHHHhhhCCCccccHHHHH
Q 031001 109 AESYIELLAKG-TGKPKEEIAKDIQRPKYMQAKEAI 143 (167)
Q Consensus 109 ~~~~~~~~a~~-tg~~~~~i~~~~~~~~~lsa~EA~ 143 (167)
-+...+.+|.. .|+|+++|++.+.=..-++++|.-
T Consensus 32 ~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~ 67 (78)
T PF01466_consen 32 LDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEE 67 (78)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 34444555555 489999999999765568887754
No 176
>PRK11186 carboxy-terminal protease; Provisional
Probab=25.42 E-value=1.9e+02 Score=27.48 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=38.4
Q ss_pred CCCeEEEE-cCCCCCCCCCCCCCCHHHHHHHHHHHh-------------------------hcCCCeEEEEccccccHHH
Q 031001 9 SKPIYLYI-NSSGTQNEKKESVGAETDAYAIADAMA-------------------------YCKSKVYTVNCGMAYGQAA 62 (167)
Q Consensus 9 ~~~I~l~I-NS~G~~~~~~~~~G~v~~g~aI~~~i~-------------------------~~~~~V~t~~~G~aaS~a~ 62 (167)
.+.+.|-+ |-+| |.+.++..|.+.+- ....|+...+.+..||++-
T Consensus 383 v~gLIlDLR~NgG---------G~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLVN~~SASASE 453 (667)
T PRK11186 383 VSGIIIDLRGNGG---------GALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASE 453 (667)
T ss_pred CCEEEEEcCCCCC---------CcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEEeCCCCccHHH
Confidence 45666666 5567 89999998888752 1135888999999999999
Q ss_pred HHHhcC
Q 031001 63 MLLSVG 68 (167)
Q Consensus 63 ~i~~ag 68 (167)
+++.+-
T Consensus 454 IfA~al 459 (667)
T PRK11186 454 IFAAAM 459 (667)
T ss_pred HHHHHH
Confidence 887764
No 177
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=23.99 E-value=48 Score=24.80 Aligned_cols=50 Identities=30% Similarity=0.304 Sum_probs=31.0
Q ss_pred cCCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccHH
Q 031001 89 GRSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQAK 140 (167)
Q Consensus 89 ~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~ 140 (167)
|-.+|--.|+.++..-=...-+++.++. .-|++.++|.+.+.+++-++|+
T Consensus 74 GDVwGHRKDinEYy~i~~~vi~~I~el~--~eG~s~eei~~ki~~e~kl~pd 123 (131)
T PF08004_consen 74 GDVWGHRKDINEYYEIPESVIERIKELK--SEGKSEEEIAEKISRETKLSPD 123 (131)
T ss_pred cccccccCCCcccccCCHHHHHHHHHHH--HcCCCHHHHHHHHHHhhcCCHH
Confidence 4466766676554421122223333333 3588999999999999888875
No 178
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=23.59 E-value=2.2e+02 Score=24.26 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEEcCCCCCCCCCCCCCCHHH-HHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCCCCceeeecCCc
Q 031001 5 FDNASKPIYLYINSSGTQNEKKESVGAETD-AYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPNSS 80 (167)
Q Consensus 5 ~~~~~~~I~l~INS~G~~~~~~~~~G~v~~-g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~s~ 80 (167)
.+||.-...+.|.=.| |+-++ +...+.. +..+.||..++.|..+ ++++|...-.|.
T Consensus 196 e~Dp~T~~ivmiGEiG---------G~aEe~AA~~i~~-~~~~KPVVa~iaG~ta----------p~gkrmGhaGai 252 (293)
T COG0074 196 EADPETEAIVMIGEIG---------GPAEEEAAEYIKA-NATRKPVVAYIAGRTA----------PEGKRMGHAGAI 252 (293)
T ss_pred hcCccccEEEEEecCC---------CcHHHHHHHHHHH-hccCCCEEEEEeccCC----------Cccchhhhhhhh
Confidence 3566777888888888 66544 3334444 4455999999999887 556665544443
No 179
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.97 E-value=81 Score=22.26 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=14.8
Q ss_pred CccccHHHHHHcCcce
Q 031001 134 PKYMQAKEAIVYGLAD 149 (167)
Q Consensus 134 ~~~lsa~EA~e~GliD 149 (167)
..||+++.|.++||-|
T Consensus 31 ~v~i~p~~A~~~gi~~ 46 (121)
T cd02794 31 EVWINPLDAAARGIKD 46 (121)
T ss_pred CEEECHHHHHHcCCCC
Confidence 4799999999999998
No 180
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=22.86 E-value=3.5e+02 Score=24.79 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCCCC-CCCCCCCHHHHHHHHHHHhhcCCCeEEEEccccccHHHHHHhcCC---CCceeeecCCceee
Q 031001 9 SKPIYLYINSSGTQNE-KKESVGAETDAYAIADAMAYCKSKVYTVNCGMAYGQAAMLLSVGA---KGYRGLQPNSSTKL 83 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~-~~~~~G~v~~g~aI~~~i~~~~~~V~t~~~G~aaS~a~~i~~ag~---~~~R~~~p~s~~mi 83 (167)
.-|+.+.-|++|--.+ ..|.-|-...|--++++....+.|-.|+..|.+.+ |.+= +++. .+--|+-|++++-+
T Consensus 384 ~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~-m~sr~~~gd~~yawP~A~Iav 460 (536)
T KOG0540|consen 384 NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA-MCSRGYSGDINYAWPNARIAV 460 (536)
T ss_pred CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc-ccccccCCceeEEcccceeee
Confidence 3588999999996644 55666777888889999999999999999999998 5544 3331 12234555555544
No 181
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=22.85 E-value=1.6e+02 Score=27.13 Aligned_cols=75 Identities=13% Similarity=0.028 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhhcC-CCeEEEEccccccHHHHHHhcCCCCceeeecC-Cceeeecc
Q 031001 9 SKPIYLYINSSGTQNEKKESVGAETDAYAIADAMAYCK-SKVYTVNCGMAYGQAAMLLSVGAKGYRGLQPN-SSTKLYLP 86 (167)
Q Consensus 9 ~~~I~l~INS~G~~~~~~~~~G~v~~g~aI~~~i~~~~-~~V~t~~~G~aaS~a~~i~~ag~~~~R~~~p~-s~~miH~p 86 (167)
..|+....+|.|.-=..+ ...----|.--|+..+.+. .|..+++.|-|+..|+++...++ .-++.++ +.+.+--|
T Consensus 126 g~P~i~l~dsgGari~~~-v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal~D--~~imv~~~~~mfltGP 202 (526)
T COG4799 126 GLPVIGLNDSGGARIQEG-VPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPALTD--FVIMVRDQSYMFLTGP 202 (526)
T ss_pred CCCEEEEEcccccccccC-ccccccchHHHHHHHHhccCCCEEEEEEecCcccccccccccc--eEEEEcCCccEEeeCH
Confidence 457777777777221111 0000001334455555444 79999999999999999888874 5567776 54444333
No 182
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.52 E-value=49 Score=23.07 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=15.2
Q ss_pred CccccHHHHHHcCcceE
Q 031001 134 PKYMQAKEAIVYGLADK 150 (167)
Q Consensus 134 ~~~lsa~EA~e~GliD~ 150 (167)
..+|+++.|.++||-|.
T Consensus 32 ~v~i~p~dA~~lgI~dG 48 (112)
T cd02787 32 VVFMNPDDIARLGLKAG 48 (112)
T ss_pred EEEECHHHHHHhCCCCC
Confidence 38999999999999983
No 183
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=22.11 E-value=47 Score=22.81 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=13.0
Q ss_pred CccccHHHHHHcCcce
Q 031001 134 PKYMQAKEAIVYGLAD 149 (167)
Q Consensus 134 ~~~lsa~EA~e~GliD 149 (167)
-.+|+++.|.++||-|
T Consensus 31 ~v~inp~dA~~~Gi~~ 46 (110)
T PF01568_consen 31 FVEINPEDAAKLGIKD 46 (110)
T ss_dssp EEEEEHHHHHHCT--T
T ss_pred EEEEcHHHHHHhcCcC
Confidence 5899999999999987
No 184
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.75 E-value=79 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=14.2
Q ss_pred ccccHHHHHHcCcce
Q 031001 135 KYMQAKEAIVYGLAD 149 (167)
Q Consensus 135 ~~lsa~EA~e~GliD 149 (167)
.||+++.|.++||-|
T Consensus 37 v~i~p~dA~~lgi~~ 51 (122)
T cd02792 37 VEISPELAAERGIKN 51 (122)
T ss_pred EEECHHHHHHcCCCC
Confidence 899999999999986
No 185
>PF13171 DUF4004: Protein of unknown function (DUF4004)
Probab=21.14 E-value=2.2e+02 Score=22.85 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=39.2
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh---CCCccccHHHHHHcCcceEE
Q 031001 90 RSSGPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDI---QRPKYMQAKEAIVYGLADKI 151 (167)
Q Consensus 90 ~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~---~~~~~lsa~EA~e~GliD~I 151 (167)
.++||.+-.-. +++-+++..+..-+=..|++++.++. ..+..++.++.++.|+++..
T Consensus 39 tfTGQETFFPr-----ekIL~RIekI~~mKd~~SLDELA~mfSp~~~~~~~~~~~l~~~~ivs~~ 98 (199)
T PF13171_consen 39 TFTGQETFFPR-----EKILERIEKIQKMKDDLSLDELAEMFSPNVSDVVFTEEELLKRNIVSQA 98 (199)
T ss_pred CcCCccccCcH-----HHHHHHHHHHHHhcccCCHHHHHHHcCCCcccceecHHHHHHcCcccHH
Confidence 36677544321 12233455555556678999999998 46799999999999998854
No 186
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.94 E-value=57 Score=22.71 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=14.9
Q ss_pred CccccHHHHHHcCcce
Q 031001 134 PKYMQAKEAIVYGLAD 149 (167)
Q Consensus 134 ~~~lsa~EA~e~GliD 149 (167)
..||+++.|.++||-|
T Consensus 32 ~v~i~p~dA~~lgi~~ 47 (116)
T cd02786 32 TLLIHPADAAARGIAD 47 (116)
T ss_pred EEEECHHHHHHcCCCC
Confidence 4899999999999997
No 187
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=20.88 E-value=1.4e+02 Score=26.61 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=32.7
Q ss_pred HHHHHHHHHH---HHHHHHHhCCCHHHHHhhhCC---CccccHHHHHHcCcceEEe
Q 031001 103 KDLEANAESY---IELLAKGTGKPKEEIAKDIQR---PKYMQAKEAIVYGLADKII 152 (167)
Q Consensus 103 ~~l~~~~~~~---~~~~a~~tg~~~~~i~~~~~~---~~~lsa~EA~e~GliD~I~ 152 (167)
++++..+..+ .+++.++.|++.++|++..-. ..|++++.|+..||+-.+.
T Consensus 301 r~~qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~ 356 (412)
T PF14574_consen 301 REFQLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVP 356 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCcc
Confidence 4555555443 467889999999999997743 6899999999999998764
No 188
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=20.86 E-value=2.9e+02 Score=18.95 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhCCCccccH
Q 031001 93 GPVTDMWRKAKDLEANAESYIELLAKGTGKPKEEIAKDIQRPKYMQA 139 (167)
Q Consensus 93 G~~~dl~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa 139 (167)
|++..+....+++.+.+ .+.+ +|+++|.+...|.++......-+.
T Consensus 28 ~~~~~~~~~l~~~r~~~-glSq-LAe~~GIs~stLs~iE~g~~~Ps~ 72 (89)
T TIGR02684 28 GDPAYIAHALGYIARAR-GMTQ-LARKTGLSRESLYKALSGKGNPTF 72 (89)
T ss_pred CCHHHHHHHHHHHHHHC-ChHH-HHHHHCCCHHHHHHHHcCCCCCCH
Confidence 45555555555555544 3443 999999999999999987654443
No 189
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=20.44 E-value=3.5e+02 Score=19.75 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=36.6
Q ss_pred CcCChh---HHHHHHHHHHHHHHHHHH---HHHHHhCCCHHHHHhhhCCCccccHHHHHHcCcceE
Q 031001 91 SSGPVT---DMWRKAKDLEANAESYIE---LLAKGTGKPKEEIAKDIQRPKYMQAKEAIVYGLADK 150 (167)
Q Consensus 91 ~~G~~~---dl~~~~~~l~~~~~~~~~---~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~ 150 (167)
.+|.-+ |.....+-+.+.++.+.+ .+.++.|-+++++-++..... +.+|++++||++.
T Consensus 23 ~Ygd~s~~~DyqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~~dp~--N~ee~~~Lgl~~~ 86 (114)
T PF09675_consen 23 EYGDCSSPFDYQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFLNDPK--NYEEAIKLGLLEP 86 (114)
T ss_pred cccccCCHHhHHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHHhCcc--CHHHHHHhccccC
Confidence 455444 333333334444444443 356678888998888776543 6799999999864
No 190
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=20.40 E-value=2.3e+02 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=14.8
Q ss_pred CCeEEEEccccccHHHHHHhcC
Q 031001 47 SKVYTVNCGMAYGQAAMLLSVG 68 (167)
Q Consensus 47 ~~V~t~~~G~aaS~a~~i~~ag 68 (167)
.||..++.+..+|+|-.++.+-
T Consensus 158 ~pv~vL~~~~T~SaaE~~a~~l 179 (250)
T cd07563 158 KPVYVLTSPVTFSAAEEFAYAL 179 (250)
T ss_pred CCEEEEeCCCcCcHHHHHHHHH
Confidence 4666777777777777666554
No 191
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=20.39 E-value=2.5e+02 Score=17.94 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHHHhCCCHHHHHhhhC
Q 031001 114 ELLAKGTGKPKEEIAKDIQ 132 (167)
Q Consensus 114 ~~~a~~tg~~~~~i~~~~~ 132 (167)
+-+|+++|++.+++.+.+.
T Consensus 24 eEiA~~lgis~~~v~~~l~ 42 (78)
T PF04539_consen 24 EEIAEELGISVEEVRELLQ 42 (78)
T ss_dssp HHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHH
Confidence 4578899999999988774
No 192
>COG1647 Esterase/lipase [General function prediction only]
Probab=20.38 E-value=21 Score=29.48 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=40.1
Q ss_pred CCceeeecccccCCcCChhHHHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHhhhCCCccccHHHHHH
Q 031001 78 NSSTKLYLPVVGRSSGPVTDMWRKAKDLEANAESYIELLAKG---TGKPKEEIAKDIQRPKYMQAKEAIV 144 (167)
Q Consensus 78 ~s~~miH~p~~~~~~G~~~dl~~~~~~l~~~~~~~~~~~a~~---tg~~~~~i~~~~~~~~~lsa~EA~e 144 (167)
.+.++|| +++|+..|++...++|.+. -+ ..||=+ -|.+++++.+--.+|||=.+..+-+
T Consensus 16 ~AVLllH-----GFTGt~~Dvr~Lgr~L~e~--Gy-Tv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLH-----GFTGTPRDVRMLGRYLNEN--GY-TVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEe-----ccCCCcHHHHHHHHHHHHC--Cc-eEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 3678887 4789999998777777543 12 233333 3678888877777888877766643
Done!