Query 031002
Match_columns 167
No_of_seqs 123 out of 1315
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:46:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 6.5E-39 1.4E-43 242.6 4.9 164 1-164 1-191 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.4E-35 3E-40 192.4 3.7 75 2-76 1-75 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 8.3E-33 1.8E-37 182.0 4.6 79 2-80 1-80 (83)
4 smart00432 MADS MADS domain. 100.0 9.8E-32 2.1E-36 165.0 3.6 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 4.7E-31 1E-35 162.1 3.2 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 2.6E-29 5.7E-34 149.4 -1.7 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 4.8E-22 1E-26 154.6 1.7 65 2-66 63-127 (338)
8 PF01486 K-box: K-box region; 99.7 2E-16 4.3E-21 107.8 10.9 83 84-166 11-93 (100)
9 COG5068 ARG80 Regulator of arg 99.5 4.9E-15 1.1E-19 120.4 2.2 66 1-66 81-146 (412)
10 PF10584 Proteasome_A_N: Prote 89.2 0.12 2.5E-06 25.4 0.0 14 43-56 3-16 (23)
11 PRK04098 sec-independent trans 86.6 0.86 1.9E-05 33.4 3.2 81 42-133 14-95 (158)
12 PF06698 DUF1192: Protein of u 86.5 2 4.2E-05 26.2 4.2 34 110-143 12-45 (59)
13 PF05812 Herpes_BLRF2: Herpesv 81.4 16 0.00034 25.5 8.5 59 85-143 3-65 (118)
14 PHA03155 hypothetical protein; 79.7 17 0.00038 25.0 8.3 59 85-143 8-66 (115)
15 cd00187 TOP4c DNA Topoisomeras 79.2 39 0.00085 29.0 10.8 26 44-72 302-327 (445)
16 PF01166 TSC22: TSC-22/dip/bun 76.4 4.1 8.9E-05 24.6 3.0 23 144-166 17-39 (59)
17 KOG4603 TBP-1 interacting prot 75.9 14 0.0003 27.5 6.2 61 85-145 79-142 (201)
18 PHA03162 hypothetical protein; 75.8 26 0.00055 24.9 8.6 61 84-144 12-76 (135)
19 PF06005 DUF904: Protein of un 75.3 18 0.00039 22.9 7.2 23 119-141 1-23 (72)
20 PF07106 TBPIP: Tat binding pr 73.1 34 0.00073 25.0 8.4 29 118-146 108-136 (169)
21 PRK10884 SH3 domain-containing 69.6 48 0.001 25.4 10.5 21 85-105 93-113 (206)
22 PF08317 Spc7: Spc7 kinetochor 69.2 40 0.00086 27.5 8.2 45 114-158 201-247 (325)
23 PRK13824 replication initiatio 67.8 24 0.00053 29.8 6.8 62 41-110 108-181 (404)
24 KOG0184 20S proteasome, regula 65.4 2.6 5.7E-05 32.6 0.6 24 36-59 3-28 (254)
25 PF14282 FlxA: FlxA-like prote 65.2 40 0.00087 22.8 9.5 59 86-153 20-78 (106)
26 smart00787 Spc7 Spc7 kinetocho 65.2 52 0.0011 26.9 8.1 34 113-146 195-228 (312)
27 PF10491 Nrf1_DNA-bind: NLS-bi 65.1 5.9 0.00013 30.3 2.4 45 27-71 36-87 (214)
28 PF10504 DUF2452: Protein of u 64.3 50 0.0011 24.2 7.0 44 120-163 28-74 (159)
29 PHA02592 52 DNA topisomerase I 63.8 95 0.0021 26.7 12.5 37 126-162 387-423 (439)
30 PF15188 CCDC-167: Coiled-coil 63.5 39 0.00085 22.1 7.2 60 88-165 8-67 (85)
31 PRK01371 sec-independent trans 59.8 12 0.00026 26.8 3.1 11 42-52 14-24 (137)
32 PF09151 DUF1936: Domain of un 59.2 7.2 0.00016 20.5 1.4 27 34-60 2-30 (36)
33 PLN03230 acetyl-coenzyme A car 59.2 65 0.0014 27.5 7.7 77 52-140 37-123 (431)
34 PF04521 Viral_P18: ssRNA posi 59.0 30 0.00066 24.1 4.8 29 18-46 4-42 (120)
35 PRK01919 tatB sec-independent 57.2 78 0.0017 23.5 8.9 10 43-52 15-24 (169)
36 PRK09822 lipopolysaccharide co 54.4 5.3 0.00012 31.2 0.6 41 19-60 118-161 (269)
37 PF14009 DUF4228: Domain of un 53.6 11 0.00025 27.1 2.3 34 39-72 12-46 (181)
38 PF04417 DUF501: Protein of un 53.0 40 0.00086 24.1 4.9 34 39-72 7-46 (139)
39 KOG0183 20S proteasome, regula 51.1 8.1 0.00017 29.8 1.1 16 41-56 4-19 (249)
40 PF09941 DUF2173: Uncharacteri 50.7 12 0.00026 25.6 1.8 28 31-59 2-29 (108)
41 PRK10803 tol-pal system protei 50.5 9.1 0.0002 30.3 1.4 71 34-105 11-81 (263)
42 PF09278 MerR-DNA-bind: MerR, 50.4 42 0.0009 20.0 4.1 11 118-128 14-24 (65)
43 KOG0250 DNA repair protein RAD 50.0 2.4E+02 0.0053 27.1 11.2 60 44-107 621-683 (1074)
44 PF06156 DUF972: Protein of un 50.0 73 0.0016 21.7 5.6 18 123-140 9-26 (107)
45 cd01365 KISc_KIF1A_KIF1B Kines 49.9 12 0.00027 30.7 2.1 25 36-60 83-110 (356)
46 KOG4797 Transcriptional regula 49.8 76 0.0016 21.8 5.5 29 137-166 64-92 (123)
47 TIGR02231 conserved hypothetic 49.8 1.8E+02 0.0038 25.4 11.3 45 117-162 122-166 (525)
48 PF08432 Vfa1: AAA-ATPase Vps4 49.0 54 0.0012 24.4 5.3 21 87-107 64-84 (182)
49 PF09177 Syntaxin-6_N: Syntaxi 48.9 75 0.0016 20.9 5.7 77 61-139 16-94 (97)
50 KOG4191 Histone acetyltransfer 48.5 1.2E+02 0.0026 26.2 7.6 19 119-137 439-457 (516)
51 PF03428 RP-C: Replication pro 47.7 79 0.0017 23.6 5.9 34 41-74 96-141 (177)
52 PRK15422 septal ring assembly 47.0 77 0.0017 20.4 6.2 20 120-139 2-21 (79)
53 PF11365 DUF3166: Protein of u 46.6 87 0.0019 21.0 6.5 21 146-166 74-94 (96)
54 PF09388 SpoOE-like: Spo0E lik 46.2 53 0.0012 18.4 4.0 21 118-138 21-41 (45)
55 PF06008 Laminin_I: Laminin Do 46.0 1.4E+02 0.0031 23.3 7.8 30 113-142 114-143 (264)
56 TIGR01478 STEVOR variant surfa 45.9 65 0.0014 26.0 5.4 44 7-71 25-69 (295)
57 COG4831 Roadblock/LC7 domain [ 45.6 30 0.00065 23.2 3.0 30 30-60 3-32 (109)
58 KOG0837 Transcriptional activa 44.9 76 0.0016 25.3 5.6 44 120-165 200-244 (279)
59 PF06937 EURL: EURL protein; 44.2 1.1E+02 0.0023 24.6 6.4 47 111-158 211-257 (285)
60 PLN03229 acetyl-coenzyme A car 43.8 1.2E+02 0.0026 28.0 7.3 90 43-140 50-144 (762)
61 PF10337 DUF2422: Protein of u 43.4 1.7E+02 0.0038 24.9 8.2 52 86-137 256-308 (459)
62 cd00106 KISc Kinesin motor dom 42.6 19 0.00041 29.1 2.1 25 36-60 73-100 (328)
63 PF07438 DUF1514: Protein of u 42.2 46 0.001 20.6 3.2 42 97-138 23-64 (66)
64 PF09006 Surfac_D-trimer: Lung 42.0 44 0.00095 19.2 2.9 21 145-165 3-23 (46)
65 cd01371 KISc_KIF3 Kinesin moto 41.7 21 0.00046 29.1 2.3 25 36-60 76-103 (333)
66 PF11232 Med25: Mediator compl 41.7 22 0.00047 26.0 2.1 23 37-59 109-132 (152)
67 TIGR02976 phageshock_pspB phag 41.5 83 0.0018 20.0 4.5 42 66-107 23-64 (75)
68 PRK14625 hypothetical protein; 40.5 1.2E+02 0.0026 20.8 6.5 66 88-153 5-93 (109)
69 PHA02109 hypothetical protein 40.3 59 0.0013 24.3 4.2 12 63-74 138-149 (233)
70 PF13082 DUF3931: Protein of u 40.3 15 0.00032 21.8 0.8 43 4-53 6-50 (66)
71 PF06667 PspB: Phage shock pro 39.9 95 0.0021 19.8 4.6 43 66-108 23-65 (75)
72 KOG4637 Adaptor for phosphoino 39.6 26 0.00057 29.4 2.5 42 33-76 367-415 (464)
73 PF14662 CCDC155: Coiled-coil 39.2 1.7E+02 0.0037 22.2 9.7 43 121-164 69-111 (193)
74 PF10805 DUF2730: Protein of u 39.2 1.2E+02 0.0026 20.4 5.9 55 85-139 35-92 (106)
75 COG0139 HisI Phosphoribosyl-AM 39.1 16 0.00034 25.1 1.0 36 18-53 51-95 (111)
76 cd02980 TRX_Fd_family Thioredo 39.0 31 0.00068 21.2 2.3 29 39-68 47-76 (77)
77 cd01368 KISc_KIF23_like Kinesi 38.7 23 0.0005 29.1 2.1 25 36-60 83-110 (345)
78 KOG4643 Uncharacterized coiled 38.5 2.7E+02 0.0059 26.8 8.8 21 35-55 141-161 (1195)
79 PF00225 Kinesin: Kinesin moto 38.3 15 0.00032 29.8 0.9 24 36-59 69-95 (335)
80 KOG3716 Carnitine O-acyltransf 38.3 73 0.0016 28.9 5.1 29 46-74 156-184 (764)
81 PRK14627 hypothetical protein; 38.1 1.2E+02 0.0027 20.3 6.5 36 118-153 57-92 (100)
82 PF14263 DUF4354: Domain of un 37.9 11 0.00024 26.5 0.0 41 11-56 41-81 (124)
83 PF04849 HAP1_N: HAP1 N-termin 37.7 2E+02 0.0043 23.5 7.2 42 123-164 214-257 (306)
84 PF14193 DUF4315: Domain of un 36.9 87 0.0019 20.3 4.2 16 118-133 47-62 (83)
85 cd01363 Motor_domain Myosin an 36.6 20 0.00043 26.6 1.2 25 36-60 18-45 (186)
86 COG4917 EutP Ethanolamine util 36.3 23 0.0005 25.3 1.4 24 35-58 59-82 (148)
87 cd01370 KISc_KIP3_like Kinesin 36.3 26 0.00055 28.7 2.0 25 36-60 82-109 (338)
88 KOG4316 Uncharacterized conser 36.1 19 0.00041 26.1 1.0 42 33-74 43-95 (172)
89 cd01369 KISc_KHC_KIF5 Kinesin 35.9 25 0.00053 28.5 1.8 25 36-60 71-98 (325)
90 cd01366 KISc_C_terminal Kinesi 34.8 28 0.00061 28.2 2.0 24 36-59 72-98 (329)
91 PF05700 BCAS2: Breast carcino 34.6 2.1E+02 0.0046 21.9 11.0 52 112-163 129-190 (221)
92 PRK00708 sec-independent trans 34.4 76 0.0017 24.4 4.1 35 34-72 8-42 (209)
93 PF07956 DUF1690: Protein of U 34.0 1.8E+02 0.0038 20.9 9.2 108 47-159 1-118 (142)
94 PRK10884 SH3 domain-containing 33.7 2.2E+02 0.0047 21.8 10.2 24 89-112 90-113 (206)
95 cd01376 KISc_KID_like Kinesin 33.5 34 0.00074 27.7 2.3 25 36-60 75-102 (319)
96 PRK14622 hypothetical protein; 33.4 1.5E+02 0.0033 19.9 6.5 36 118-153 57-92 (103)
97 smart00129 KISc Kinesin motor, 33.3 34 0.00073 27.7 2.2 24 36-59 74-100 (335)
98 KOG2751 Beclin-like protein [S 33.0 3.2E+02 0.0069 23.5 9.0 78 89-167 147-231 (447)
99 TIGR02449 conserved hypothetic 32.8 1.2E+02 0.0027 18.7 5.8 41 124-164 2-44 (65)
100 COG4888 Uncharacterized Zn rib 32.7 30 0.00065 23.4 1.5 57 1-60 1-61 (104)
101 cd01374 KISc_CENP_E Kinesin mo 32.6 34 0.00074 27.6 2.1 24 36-59 68-94 (321)
102 TIGR01916 F420_cofE F420-0:gam 32.4 30 0.00065 27.3 1.7 28 33-60 133-160 (243)
103 cd01367 KISc_KIF2_like Kinesin 32.3 32 0.0007 27.9 1.9 24 36-59 79-105 (322)
104 cd01057 AAMH_A Aromatic and Al 32.2 32 0.0007 29.7 2.0 37 35-71 382-431 (465)
105 PF09403 FadA: Adhesion protei 32.0 1.2E+02 0.0025 21.4 4.5 20 122-141 89-108 (126)
106 PF07295 DUF1451: Protein of u 31.9 1.5E+02 0.0033 21.4 5.1 19 123-141 66-84 (146)
107 PF11944 DUF3461: Protein of u 31.7 70 0.0015 22.4 3.2 24 121-144 101-124 (125)
108 COG3883 Uncharacterized protei 31.7 2.7E+02 0.0059 22.3 7.9 33 120-153 78-110 (265)
109 TIGR02051 MerR Hg(II)-responsi 31.6 1.7E+02 0.0038 20.0 6.3 16 129-144 79-94 (124)
110 cd01106 HTH_TipAL-Mta Helix-Tu 31.6 1.5E+02 0.0033 19.4 6.0 43 118-160 57-99 (103)
111 PF06020 Roughex: Drosophila r 31.4 22 0.00048 28.7 0.8 16 36-51 183-198 (334)
112 PF07676 PD40: WD40-like Beta 31.3 32 0.0007 18.1 1.3 19 42-60 10-28 (39)
113 PF01502 PRA-CH: Phosphoribosy 31.2 16 0.00034 23.4 -0.1 37 17-53 18-63 (75)
114 TIGR00012 L29 ribosomal protei 30.8 1.1E+02 0.0024 18.0 3.6 27 116-142 2-28 (55)
115 cd04790 HTH_Cfa-like_unk Helix 30.8 2.1E+02 0.0046 21.0 5.9 14 32-45 4-17 (172)
116 PRK11546 zraP zinc resistance 30.7 2.1E+02 0.0045 20.7 5.9 14 61-74 51-64 (143)
117 TIGR00606 rad50 rad50. This fa 30.6 5.4E+02 0.012 25.4 10.6 44 118-161 821-870 (1311)
118 KOG3048 Molecular chaperone Pr 30.5 1.4E+02 0.0031 21.6 4.7 34 113-146 7-40 (153)
119 TIGR01950 SoxR redox-sensitive 30.4 81 0.0018 22.5 3.6 10 33-42 5-14 (142)
120 PF04945 YHS: YHS domain; Int 30.3 33 0.00072 19.3 1.2 27 39-65 6-35 (47)
121 KOG0933 Structural maintenance 30.3 5.1E+02 0.011 25.1 10.4 26 119-144 738-763 (1174)
122 cd01668 TGS_RelA_SpoT TGS_RelA 30.0 53 0.0012 18.8 2.2 25 45-69 1-26 (60)
123 PF10623 PilI: Plasmid conjuga 29.9 53 0.0012 21.2 2.2 30 42-71 8-40 (83)
124 cd04779 HTH_MerR-like_sg4 Heli 29.6 2E+02 0.0044 20.2 6.1 23 122-144 77-99 (134)
125 PRK14626 hypothetical protein; 29.4 1.9E+02 0.0041 19.8 6.9 67 87-153 7-96 (110)
126 PF07106 TBPIP: Tat binding pr 29.4 2.2E+02 0.0048 20.6 11.8 54 89-143 113-166 (169)
127 KOG4643 Uncharacterized coiled 29.3 1.7E+02 0.0037 28.1 6.0 39 128-166 280-319 (1195)
128 KOG3718 Carnitine O-acyltransf 29.2 1.1E+02 0.0024 26.7 4.6 29 48-76 14-42 (609)
129 KOG2958 Galactose-1-phosphate 29.0 57 0.0012 26.6 2.7 30 45-74 111-142 (354)
130 PRK11637 AmiB activator; Provi 28.3 3.6E+02 0.0079 22.7 10.9 19 87-105 49-67 (428)
131 KOG4311 Histidinol dehydrogena 28.1 2.5E+02 0.0055 22.7 6.1 64 15-78 180-264 (359)
132 PRK10361 DNA recombination pro 28.0 4E+02 0.0086 23.3 7.8 51 114-164 128-181 (475)
133 PLN02939 transferase, transfer 27.9 3.4E+02 0.0073 26.0 7.8 36 128-164 364-399 (977)
134 PF13252 DUF4043: Protein of u 27.8 30 0.00066 28.6 1.1 28 31-58 270-299 (341)
135 COG5179 TAF1 Transcription ini 27.6 62 0.0013 29.2 2.9 48 26-74 446-493 (968)
136 KOG4378 Nuclear protein COP1 [ 27.6 4.4E+02 0.0095 23.4 8.0 23 4-26 521-543 (673)
137 PF10112 Halogen_Hydrol: 5-bro 27.3 63 0.0014 24.2 2.7 55 21-75 92-151 (199)
138 cd04776 HTH_GnyR Helix-Turn-He 27.2 2E+02 0.0043 19.6 5.0 26 120-145 74-99 (118)
139 PF06005 DUF904: Protein of un 27.2 1.7E+02 0.0036 18.4 6.3 6 131-136 9-14 (72)
140 TIGR03752 conj_TIGR03752 integ 27.2 4.2E+02 0.0092 23.1 9.7 22 87-108 68-89 (472)
141 cd04788 HTH_NolA-AlbR Helix-Tu 27.1 1.7E+02 0.0037 19.1 4.5 37 118-161 57-93 (96)
142 TIGR01001 metA homoserine O-su 27.1 52 0.0011 26.8 2.2 44 28-71 200-248 (300)
143 COG5314 Conjugal transfer/entr 27.0 3.2E+02 0.0068 21.6 8.4 48 87-136 53-100 (252)
144 PF04697 Pinin_SDK_N: pinin/SD 26.9 1.5E+02 0.0032 21.1 4.2 36 87-122 5-40 (134)
145 PF08172 CASP_C: CASP C termin 26.9 66 0.0014 25.3 2.8 51 61-111 79-133 (248)
146 COG3880 Modulator of heat shoc 26.6 2.5E+02 0.0053 21.0 5.4 36 122-157 136-171 (176)
147 cd04768 HTH_BmrR-like Helix-Tu 26.5 1.9E+02 0.0041 18.8 4.8 37 118-161 57-93 (96)
148 cd03064 TRX_Fd_NuoE TRX-like [ 26.4 60 0.0013 20.3 2.1 28 39-69 52-80 (80)
149 COG4575 ElaB Uncharacterized c 26.4 2.1E+02 0.0047 19.4 7.7 51 87-145 10-60 (104)
150 PF08796 DUF1797: Protein of u 26.2 40 0.00087 21.0 1.1 18 39-56 24-41 (67)
151 PRK00306 50S ribosomal protein 26.2 1.2E+02 0.0025 18.6 3.3 28 115-142 5-32 (66)
152 PF15254 CCDC14: Coiled-coil d 26.1 5.5E+02 0.012 24.0 10.0 76 88-164 390-471 (861)
153 PRK14624 hypothetical protein; 26.1 2.3E+02 0.0049 19.6 6.7 67 87-153 8-97 (115)
154 cd01373 KISc_KLP2_like Kinesin 25.9 45 0.00098 27.3 1.8 24 36-59 69-95 (337)
155 cd01375 KISc_KIF9_like Kinesin 25.8 40 0.00086 27.5 1.4 24 36-59 75-101 (334)
156 KOG4403 Cell surface glycoprot 25.3 2.2E+02 0.0048 24.6 5.6 23 87-109 254-276 (575)
157 PF08657 DASH_Spc34: DASH comp 25.3 2.9E+02 0.0063 21.9 6.1 20 89-108 191-210 (259)
158 KOG4252 GTP-binding protein [S 25.2 36 0.00078 25.9 1.0 31 38-74 90-120 (246)
159 COG1422 Predicted membrane pro 25.1 3.2E+02 0.0069 20.9 7.1 23 84-106 71-93 (201)
160 PF11802 CENP-K: Centromere-as 24.9 3.7E+02 0.0079 21.6 8.1 28 118-145 88-115 (268)
161 PF06657 Cep57_MT_bd: Centroso 24.9 1.9E+02 0.0042 18.4 8.2 56 87-146 19-74 (79)
162 PRK13169 DNA replication intia 24.8 2.4E+02 0.0051 19.4 6.2 14 124-137 10-23 (110)
163 PF08700 Vps51: Vps51/Vps67; 24.6 1.9E+02 0.0041 18.1 6.9 28 88-115 22-49 (87)
164 PF08946 Osmo_CC: Osmosensory 24.1 1.5E+02 0.0033 16.9 3.6 14 148-161 26-39 (46)
165 PF11460 DUF3007: Protein of u 24.1 70 0.0015 21.8 2.1 19 114-132 85-103 (104)
166 PF11629 Mst1_SARAH: C termina 24.1 1E+02 0.0022 18.0 2.5 21 115-135 4-24 (49)
167 PRK09039 hypothetical protein; 23.8 4.2E+02 0.009 21.9 9.4 20 87-106 139-158 (343)
168 COG1438 ArgR Arginine represso 23.7 88 0.0019 22.7 2.7 17 34-50 119-135 (150)
169 COG5000 NtrY Signal transducti 23.5 41 0.00088 30.3 1.1 22 36-57 374-395 (712)
170 PF07058 Myosin_HC-like: Myosi 23.5 3.3E+02 0.0072 22.4 6.1 42 121-162 37-80 (351)
171 COG0749 PolA DNA polymerase I 23.4 2.6E+02 0.0055 25.2 5.9 42 87-128 213-254 (593)
172 cd03063 TRX_Fd_FDH_beta TRX-li 23.4 1E+02 0.0022 20.3 2.8 36 38-73 44-81 (92)
173 cd08888 SRPBCC_PITPNA-B_like L 23.4 1.1E+02 0.0024 24.3 3.4 29 111-139 229-257 (258)
174 PF06523 DUF1106: Protein of u 23.4 65 0.0014 20.4 1.7 19 30-48 21-39 (91)
175 PF04873 EIN3: Ethylene insens 23.4 27 0.00059 29.1 0.0 39 25-63 53-92 (354)
176 PRK13293 F420-0--gamma-glutamy 23.3 56 0.0012 25.8 1.8 28 33-60 134-161 (245)
177 TIGR02894 DNA_bind_RsfA transc 23.2 3.1E+02 0.0068 20.2 8.4 19 116-134 77-95 (161)
178 PF01763 Herpes_UL6: Herpesvir 23.1 1.5E+02 0.0033 26.3 4.5 33 135-167 357-389 (557)
179 PRK13677 hypothetical protein; 23.0 1.3E+02 0.0028 21.1 3.2 24 121-144 101-124 (125)
180 PF14282 FlxA: FlxA-like prote 22.8 2.5E+02 0.0053 18.9 6.6 55 91-162 18-72 (106)
181 cd00427 Ribosomal_L29_HIP Ribo 22.8 1.5E+02 0.0032 17.5 3.2 26 116-141 3-28 (57)
182 PF13991 BssS: BssS protein fa 22.7 1.5E+02 0.0032 18.9 3.2 24 117-140 40-63 (73)
183 PF03233 Cauli_AT: Aphid trans 22.7 3.2E+02 0.007 20.2 8.0 26 120-145 136-161 (163)
184 PF04977 DivIC: Septum formati 22.7 1.6E+02 0.0034 18.0 3.5 22 87-108 26-47 (80)
185 PF01920 Prefoldin_2: Prefoldi 22.6 1.6E+02 0.0036 19.0 3.8 65 33-110 36-101 (106)
186 PRK09458 pspB phage shock prot 22.6 2.2E+02 0.0047 18.2 4.2 23 85-107 42-64 (75)
187 PRK13729 conjugal transfer pil 22.6 3.4E+02 0.0074 23.7 6.4 19 87-105 71-89 (475)
188 KOG1655 Protein involved in va 22.5 3.2E+02 0.0069 21.0 5.5 37 128-164 106-142 (218)
189 KOG1760 Molecular chaperone Pr 22.4 2.9E+02 0.0062 19.5 5.0 32 86-117 96-127 (131)
190 PLN03194 putative disease resi 22.4 58 0.0013 24.6 1.6 30 39-68 79-108 (187)
191 PF13870 DUF4201: Domain of un 22.3 3.2E+02 0.0069 19.9 11.4 59 87-146 8-66 (177)
192 PF00831 Ribosomal_L29: Riboso 22.2 72 0.0016 19.0 1.7 25 118-142 6-30 (58)
193 PF02824 TGS: TGS domain; Int 22.1 72 0.0016 19.0 1.7 25 45-69 1-26 (60)
194 PF13188 PAS_8: PAS domain; PD 21.8 63 0.0014 18.7 1.4 29 37-67 6-34 (64)
195 PHA01750 hypothetical protein 21.6 2.2E+02 0.0047 17.8 4.9 15 90-104 40-54 (75)
196 PF10226 DUF2216: Uncharacteri 21.6 3.7E+02 0.008 20.4 9.1 16 92-107 55-70 (195)
197 cd04769 HTH_MerR2 Helix-Turn-H 21.5 2.7E+02 0.0058 18.8 6.4 16 127-142 80-95 (116)
198 PF05852 DUF848: Gammaherpesvi 21.5 3.3E+02 0.007 19.8 8.3 53 91-145 60-112 (146)
199 cd08637 DNA_pol_A_pol_I_C Poly 21.4 3.2E+02 0.007 22.8 6.0 40 88-127 3-42 (377)
200 PF03670 UPF0184: Uncharacteri 21.4 2.5E+02 0.0053 18.3 5.8 28 121-148 35-62 (83)
201 PF14723 SSFA2_C: Sperm-specif 21.3 1.1E+02 0.0024 22.8 2.8 21 87-107 107-127 (179)
202 cd04783 HTH_MerR1 Helix-Turn-H 21.3 2.8E+02 0.0061 18.9 6.3 12 32-43 3-14 (126)
203 PF00383 dCMP_cyt_deam_1: Cyti 21.1 54 0.0012 21.3 1.1 27 28-54 7-37 (102)
204 PF04019 DUF359: Protein of un 21.0 37 0.0008 23.7 0.3 16 45-60 79-94 (121)
205 PRK05561 DNA topoisomerase IV 21.0 6.7E+02 0.015 23.2 12.7 36 126-161 422-457 (742)
206 PF06717 DUF1202: Protein of u 20.9 2.1E+02 0.0046 23.2 4.5 33 87-119 154-186 (308)
207 COG4052 Uncharacterized protei 20.8 96 0.0021 24.5 2.5 42 28-71 54-103 (310)
208 KOG0432 Valyl-tRNA synthetase 20.8 3.1E+02 0.0067 26.0 6.0 22 86-107 931-952 (995)
209 PRK11519 tyrosine kinase; Prov 20.7 6.5E+02 0.014 23.0 8.9 49 62-112 246-294 (719)
210 PF12112 DUF3579: Protein of u 20.7 28 0.0006 23.2 -0.4 20 38-60 29-50 (92)
211 COG5068 ARG80 Regulator of arg 20.6 62 0.0014 27.4 1.6 47 8-60 18-64 (412)
212 KOG0182 20S proteasome, regula 20.5 57 0.0012 25.3 1.2 18 39-56 7-24 (246)
213 PF09638 Ph1570: Ph1570 protei 20.3 60 0.0013 23.1 1.2 26 46-71 125-150 (152)
214 PF12537 DUF3735: Protein of u 20.2 2.3E+02 0.005 17.6 4.1 25 121-145 47-71 (72)
215 PF07083 DUF1351: Protein of u 20.2 4E+02 0.0087 20.3 10.8 85 61-150 23-113 (215)
216 PF13540 RCC1_2: Regulator of 20.2 41 0.00089 17.0 0.3 24 36-60 3-26 (30)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=6.5e-39 Score=242.58 Aligned_cols=164 Identities=46% Similarity=0.639 Sum_probs=134.3
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCch--hHHHHHHHhhccccccC
Q 031002 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLKHTKDTRN 78 (167)
Q Consensus 1 M~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~--v~~Vl~RY~~~~~~~~~ 78 (167)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+ +.+|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999985 99999999998776655
Q ss_pred CCCCchhh---------------H-----HHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCCCH-HHHHHHHHHHHHH
Q 031002 79 KQQPTEQN---------------M-----QHLKHEAANMVKKIELLEV---SKRKLLGEGLASCTL-EELQQIERQLEKS 134 (167)
Q Consensus 79 ~~~~~~~~---------------~-----e~l~~e~~kl~k~~~~l~~---~~r~~~g~~l~~ls~-~eL~~Le~~Le~~ 134 (167)
+....... . .........+....+.+.. ..+++.++++.+++. .+|..++..|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 44331111 0 1122334444555555443 367789999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 031002 135 VSNIRARKNQVFNEQIA-QLKEKVSVIKICF 164 (167)
Q Consensus 135 L~~Ir~rk~~ll~~~~~-~l~~k~~~l~~~~ 164 (167)
+..++..+...+.+++. .++.....+..+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN 191 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence 99999999988888876 7777776666554
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=1.4e-35 Score=192.45 Aligned_cols=75 Identities=69% Similarity=0.992 Sum_probs=72.7
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhccccc
Q 031002 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDT 76 (167)
Q Consensus 2 ~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~~~ 76 (167)
||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|++|++.+||+||.+.+...
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~ 75 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS 75 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=8.3e-33 Score=181.97 Aligned_cols=79 Identities=53% Similarity=0.738 Sum_probs=74.0
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCch-hHHHHHHHhhccccccCCC
Q 031002 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKQ 80 (167)
Q Consensus 2 ~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~-v~~Vl~RY~~~~~~~~~~~ 80 (167)
||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|+.+.|++++ +..++++|...+...+...
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKKK 80 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhcc
Confidence 799999999999999999999999999999999999999999999999999999987775 9999999999888766544
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=9.8e-32 Score=164.95 Aligned_cols=59 Identities=75% Similarity=1.058 Sum_probs=58.0
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCc
Q 031002 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 2 ~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp 60 (167)
||+||+|++|+|+++|++||+||+.||||||+|||+||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999887
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=4.7e-31 Score=162.07 Aligned_cols=59 Identities=80% Similarity=1.078 Sum_probs=57.7
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCc
Q 031002 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 2 ~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp 60 (167)
||+||+|++|+|+..|++||+||++||||||+|||+||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999876
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=2.6e-29 Score=149.41 Aligned_cols=51 Identities=63% Similarity=0.991 Sum_probs=47.0
Q ss_pred eeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccC
Q 031002 9 RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 59 (167)
Q Consensus 9 k~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~s 59 (167)
|+|+|++.|++||+||+.||||||.|||+||||+||+|||||+|++|+|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.84 E-value=4.8e-22 Score=154.65 Aligned_cols=65 Identities=42% Similarity=0.618 Sum_probs=61.4
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHH
Q 031002 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETI 66 (167)
Q Consensus 2 ~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl 66 (167)
||+||+|+||+|+..|++||+|||.||||||+|||||+|.+|-|+|.|..|.+|+|+.|.++.||
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i 127 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMI 127 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999998655444
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.71 E-value=2e-16 Score=107.75 Aligned_cols=83 Identities=37% Similarity=0.519 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031002 84 EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKIC 163 (167)
Q Consensus 84 ~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~ 163 (167)
..+.+.++.++.+++.+++.++..+|++.|+++++||++||..||..|+.+|..||+||.+++.+++..|++|++.|.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc
Q 031002 164 FSV 166 (167)
Q Consensus 164 ~~~ 166 (167)
|..
T Consensus 91 n~~ 93 (100)
T PF01486_consen 91 NNQ 93 (100)
T ss_pred HHH
Confidence 963
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.51 E-value=4.9e-15 Score=120.40 Aligned_cols=66 Identities=39% Similarity=0.621 Sum_probs=62.6
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHH
Q 031002 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETI 66 (167)
Q Consensus 1 M~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl 66 (167)
|||+|+.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|.+|.++.|+.|..+.|+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~ 146 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVV 146 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccc
Confidence 789999999999999999999999999999999999999999999999999999999998655554
No 10
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=89.19 E-value=0.12 Score=25.42 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=10.9
Q ss_pred eeeeeecCCCcccc
Q 031002 43 VAVIIFSPRGKLSE 56 (167)
Q Consensus 43 v~livfsp~gk~~~ 56 (167)
-.+.+|||+|+++.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 34668999999873
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=86.65 E-value=0.86 Score=33.37 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=44.7
Q ss_pred ceeeeeecCCCccccccCchhHHHHHHHhhccccccCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 031002 42 EVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQP-TEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120 (167)
Q Consensus 42 ~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~~~~~~~~~-~~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls 120 (167)
=||+|||||. +++..+. .+...+..|++.....+. .. .+-++..++.+..+.++.++.....++ ..++
T Consensus 14 vVaLlvfGP~-KLP~~~r-~lGk~ir~~K~~~~~~k~--~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~ 82 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMV-DIAKFFKAVKKTINDAKS--TLDKEINIEEIKEEALKYKKEFESAVESLK-------KKLK 82 (158)
T ss_pred HHHHhhcCch-HHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccC
Confidence 4789999996 4553322 344445555554332211 00 012344566677777766666655554 2267
Q ss_pred HHHHHHHHHHHHH
Q 031002 121 LEELQQIERQLEK 133 (167)
Q Consensus 121 ~~eL~~Le~~Le~ 133 (167)
+++|.++...+..
T Consensus 83 ~eel~~~~~~~~~ 95 (158)
T PRK04098 83 FEELDDLKITAEN 95 (158)
T ss_pred hHHHHHHhhhhhh
Confidence 7787777655544
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.49 E-value=2 Score=26.21 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.6
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 110 KLLGEGLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 110 ~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
+..|.+|+.||++||.+-...|+.-+.+++.-..
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999988888876543
No 13
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=81.37 E-value=16 Score=25.50 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLEVSKRKLLG----EGLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~~~~r~~~g----~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
..++.|..++.+|+-++..|+..++.-.| ++-.-|+..+=+.+....-.+|.+.-.+|-
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KI 65 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKI 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999988888777 667779999999999888888887776663
No 14
>PHA03155 hypothetical protein; Provisional
Probab=79.67 E-value=17 Score=25.04 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
..++.|..++.+|+-++..|+..+++--+++-.-|+..+=+.+....-.+|...-++|-
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KI 66 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKI 66 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999888766556666779999999999998888887766653
No 15
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=79.18 E-value=39 Score=29.00 Aligned_cols=26 Identities=23% Similarity=0.744 Sum_probs=21.3
Q ss_pred eeeeecCCCccccccCchhHHHHHHHhhc
Q 031002 44 AVIIFSPRGKLSEFASSSMQETIERYLKH 72 (167)
Q Consensus 44 ~livfsp~gk~~~f~sp~v~~Vl~RY~~~ 72 (167)
-+++|.|+|++..| ++.+||..|..+
T Consensus 302 Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 302 NMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred eEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 67888899988878 788888888774
No 16
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=76.36 E-value=4.1 Score=24.65 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 031002 144 QVFNEQIAQLKEKVSVIKICFSV 166 (167)
Q Consensus 144 ~ll~~~~~~l~~k~~~l~~~~~~ 166 (167)
+.|.++|..|..+...|..||++
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~ 39 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNL 39 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999975
No 17
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.91 E-value=14 Score=27.52 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGE--GL-ASCTLEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~--~l-~~ls~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
++.+.|..++.++..+...++..-+.+..+ .| ..|+++|++.-...|..-...-++|...+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666665555555544433221 12 23677777777777776666666665443
No 18
>PHA03162 hypothetical protein; Provisional
Probab=75.82 E-value=26 Score=24.88 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 84 EQNMQHLKHEAANMVKKIELLEVSKRKLLGEG----LASCTLEELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 84 ~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~----l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
+..++.|..++.+|+-++..|+..++.-.|.+ -..|+..+=+-+....-..|...-.+|-+
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe 76 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIE 76 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999999999998887665554 33599999998888888888877766533
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.34 E-value=18 Score=22.87 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 031002 119 CTLEELQQIERQLEKSVSNIRAR 141 (167)
Q Consensus 119 ls~~eL~~Le~~Le~~L~~Ir~r 141 (167)
+|.+.|..|+..+..++..|..=
T Consensus 1 M~~E~l~~LE~ki~~aveti~~L 23 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALL 23 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888777643
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.06 E-value=34 Score=24.98 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
.++.+||......|...+..+.+|...|-
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665554
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.59 E-value=48 Score=25.35 Aligned_cols=21 Identities=10% Similarity=0.368 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLE 105 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~ 105 (167)
..+..++.++..++.++..+.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665554
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.24 E-value=40 Score=27.50 Aligned_cols=45 Identities=31% Similarity=0.610 Sum_probs=32.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 031002 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN--EQIAQLKEKVS 158 (167)
Q Consensus 114 ~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~--~~~~~l~~k~~ 158 (167)
..++.++.++|..+...|...-..|..++..+-. .+...++.++.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999988888877766543 34444444443
No 23
>PRK13824 replication initiation protein RepC; Provisional
Probab=67.78 E-value=24 Score=29.83 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=34.2
Q ss_pred cceeeeee--cCCCcccccc--Cc--------hhHHHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 031002 41 AEVAVIIF--SPRGKLSEFA--SS--------SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSK 108 (167)
Q Consensus 41 ~~v~livf--sp~gk~~~f~--sp--------~v~~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~ 108 (167)
|++++|++ |||||-|..- +. +...++.||....... +..+.-+.++..++.++..+....
T Consensus 108 veaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A--------~~~~ae~~~~r~lr~~it~~rRdi 179 (404)
T PRK13824 108 VEAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALA--------EQVAAERKALRRLRERLTLCRRDI 179 (404)
T ss_pred HHCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888 9999887532 21 4667777777644422 122223444555555554444444
Q ss_pred HH
Q 031002 109 RK 110 (167)
Q Consensus 109 r~ 110 (167)
+.
T Consensus 180 ~~ 181 (404)
T PRK13824 180 AK 181 (404)
T ss_pred HH
Confidence 33
No 24
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=65.40 E-value=2.6 Score=32.56 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=19.7
Q ss_pred hccCCcceeeeeecCCCcccc--ccC
Q 031002 36 SVLCDAEVAVIIFSPRGKLSE--FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~--f~s 59 (167)
||=.|-|.|.-+|||+|+.|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 456788999999999999885 654
No 25
>PF14282 FlxA: FlxA-like protein
Probab=65.19 E-value=40 Score=22.80 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 86 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQL 153 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l 153 (167)
.+..|+.++..|.+++..+ ... .+++.++-..-...|..-+..+.....++-.++...-
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l-------~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQEL-------SQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-------Hcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444 332 5678888888888888888888888877766554443
No 26
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.19 E-value=52 Score=26.85 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 113 GEGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 113 g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
.+.++.++.++|..+...|......|..++..+-
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999988888876643
No 27
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=65.06 E-value=5.9 Score=30.30 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=34.4
Q ss_pred chhhhh----hhhhccCCcceeeeeecCCC---ccccccCchhHHHHHHHhh
Q 031002 27 GLLKKA----FELSVLCDAEVAVIIFSPRG---KLSEFASSSMQETIERYLK 71 (167)
Q Consensus 27 gl~KKa----~ELs~LC~~~v~livfsp~g---k~~~f~sp~v~~Vl~RY~~ 71 (167)
-|+.|. .|++|=+|-++.|+|.+|+. ..-.|+..-++.|+..|+.
T Consensus 36 rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 36 RLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 455554 89999999999999999974 2334888777777777765
No 28
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=64.28 E-value=50 Score=24.25 Aligned_cols=44 Identities=30% Similarity=0.311 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 031002 120 TLEELQQIERQLEKSVSNIRARKN---QVFNEQIAQLKEKVSVIKIC 163 (167)
Q Consensus 120 s~~eL~~Le~~Le~~L~~Ir~rk~---~ll~~~~~~l~~k~~~l~~~ 163 (167)
+..+|..|...++.+-..++++-. .++.+||..||++-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888887777644 46778999999988776654
No 29
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=63.80 E-value=95 Score=26.67 Aligned_cols=37 Identities=5% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 126 QIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKI 162 (167)
Q Consensus 126 ~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~ 162 (167)
+.+..|+..|.++..-..+-+.+++.+++++...|..
T Consensus 387 q~~~lL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~ 423 (439)
T PHA02592 387 YADKLVAMNIYSMTSDEREKLQKEAEELEKEHEYWKK 423 (439)
T ss_pred HHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666677777777777777777777777777776653
No 30
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=63.46 E-value=39 Score=22.11 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031002 88 QHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKICFS 165 (167)
Q Consensus 88 e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~~~ 165 (167)
+.+...+...+..++.++..+ .-..||.++-..++..+ ..++.++....++.+.|+-||+
T Consensus 8 d~lEekl~~cr~~le~ve~rL------~~~eLs~e~R~~lE~E~------------~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRL------RRRELSPEARRSLEKEL------------NELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHH------cccCCChHHHHHHHHHH------------HHHHHHhhccHHHHHHHHHhhh
Confidence 334444444444444444322 23456777777777332 2455666778888888888886
No 31
>PRK01371 sec-independent translocase; Provisional
Probab=59.79 E-value=12 Score=26.79 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=8.3
Q ss_pred ceeeeeecCCC
Q 031002 42 EVAVIIFSPRG 52 (167)
Q Consensus 42 ~v~livfsp~g 52 (167)
=|+||||+|..
T Consensus 14 vVallvfGPeK 24 (137)
T PRK01371 14 VLAVLVFGPDK 24 (137)
T ss_pred HHHhheeCchH
Confidence 47889999854
No 32
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=59.20 E-value=7.2 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.4
Q ss_pred hhhccCCcceeeeeecCCC--ccccccCc
Q 031002 34 ELSVLCDAEVAVIIFSPRG--KLSEFASS 60 (167)
Q Consensus 34 ELs~LC~~~v~livfsp~g--k~~~f~sp 60 (167)
.|+--||+-|-+-||...| ++|..+.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNP 30 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-T
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 3667799999999999998 45555555
No 33
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=59.19 E-value=65 Score=27.54 Aligned_cols=77 Identities=5% Similarity=0.151 Sum_probs=36.6
Q ss_pred CccccccCc------hhH----HHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCH
Q 031002 52 GKLSEFASS------SMQ----ETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTL 121 (167)
Q Consensus 52 gk~~~f~sp------~v~----~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~ 121 (167)
+..++||+| .+. ..+.+|+-+.....+.-. .....+..|..+++.++..- ...--++ -
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~fe~pi~ele~ki~el~~~~----~~~~~~~-~ 104 (431)
T PLN03230 37 RLEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPKPVTL-------PFEKPIVDLENRIDEVRELA----NKTGVDF-S 104 (431)
T ss_pred CCCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCCCCcc-------chhhHHHHHHHHHHHHHhhh----hcccccH-H
Confidence 334666665 333 466666655443322111 12234566666666664321 1110112 2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031002 122 EELQQIERQLEKSVSNIRA 140 (167)
Q Consensus 122 ~eL~~Le~~Le~~L~~Ir~ 140 (167)
+|+..|+..++.....|-.
T Consensus 105 ~ei~~l~~~~~~~~~~i~~ 123 (431)
T PLN03230 105 AQIAELEERYDQVRRELYS 123 (431)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5666666666665555443
No 34
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=58.98 E-value=30 Score=24.10 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=20.8
Q ss_pred cccccccccchhhhhhhhhc----------cCCcceeee
Q 031002 18 QVTFSKRRNGLLKKAFELSV----------LCDAEVAVI 46 (167)
Q Consensus 18 ~~tf~kR~~gl~KKa~ELs~----------LC~~~v~li 46 (167)
-.+|+|+|..++++-..-.+ .||.++|++
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC~Ln~~~G~~CGMpaa~~ 42 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKCRLNSFCGVSCGMPAAFE 42 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeeecCCCCCCcCCCCcceee
Confidence 35789999999998866544 566666655
No 35
>PRK01919 tatB sec-independent translocase; Provisional
Probab=57.23 E-value=78 Score=23.51 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=8.4
Q ss_pred eeeeeecCCC
Q 031002 43 VAVIIFSPRG 52 (167)
Q Consensus 43 v~livfsp~g 52 (167)
||||||+|..
T Consensus 15 VALiV~GPek 24 (169)
T PRK01919 15 VALVVIGPER 24 (169)
T ss_pred HHHheeCchH
Confidence 7899999954
No 36
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=54.39 E-value=5.3 Score=31.24 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=30.1
Q ss_pred ccccccccchhhhhhhhhccCCcceee---eeecCCCccccccCc
Q 031002 19 VTFSKRRNGLLKKAFELSVLCDAEVAV---IIFSPRGKLSEFASS 60 (167)
Q Consensus 19 ~tf~kR~~gl~KKa~ELs~LC~~~v~l---ivfsp~gk~~~f~sp 60 (167)
..|.+-+.|++||.. +..||+..-++ |.||+.++..-|+..
T Consensus 118 ~~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSkD 161 (269)
T PRK09822 118 SFYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCKD 161 (269)
T ss_pred hhhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeeec
Confidence 345666888888874 77888876555 558999888777774
No 37
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=53.63 E-value=11 Score=27.13 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=26.7
Q ss_pred CCcceeeeeecCCCccccccCc-hhHHHHHHHhhc
Q 031002 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERYLKH 72 (167)
Q Consensus 39 C~~~v~livfsp~gk~~~f~sp-~v~~Vl~RY~~~ 72 (167)
|+...++-|..++|++..|..| .+.+|+..|=.+
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 3445555555589999999999 999999998776
No 38
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=53.01 E-value=40 Score=24.12 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=24.1
Q ss_pred CCcceeeeeec--CCCcccc---ccC-chhHHHHHHHhhc
Q 031002 39 CDAEVAVIIFS--PRGKLSE---FAS-SSMQETIERYLKH 72 (167)
Q Consensus 39 C~~~v~livfs--p~gk~~~---f~s-p~v~~Vl~RY~~~ 72 (167)
||.+..+.++. ++|++|. |-+ |.+...+.|....
T Consensus 7 ~G~P~Vi~~~P~l~~g~PFPTlfwLtcP~L~~~isrLE~~ 46 (139)
T PF04417_consen 7 CGFPQVIRTAPRLVDGKPFPTLFWLTCPYLVKAISRLEAE 46 (139)
T ss_pred CCCCeEEEeccCCCCCccCCccHhhcCHHHHHHHHHHHhc
Confidence 78888877775 6787765 444 7777777777663
No 39
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.13 E-value=8.1 Score=29.81 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=13.3
Q ss_pred cceeeeeecCCCcccc
Q 031002 41 AEVAVIIFSPRGKLSE 56 (167)
Q Consensus 41 ~~v~livfsp~gk~~~ 56 (167)
-|-|+-||||+|+++.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 4678899999999874
No 40
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=50.65 E-value=12 Score=25.65 Aligned_cols=28 Identities=39% Similarity=0.348 Sum_probs=21.6
Q ss_pred hhhhhhccCCcceeeeeecCCCccccccC
Q 031002 31 KAFELSVLCDAEVAVIIFSPRGKLSEFAS 59 (167)
Q Consensus 31 Ka~ELs~LC~~~v~livfsp~gk~~~f~s 59 (167)
+..+|-.|-|| +|+..||++|++.+|-.
T Consensus 2 ~l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 2 KLDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred cHHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 34678888887 56678999999988654
No 41
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=50.53 E-value=9.1 Score=30.33 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=31.8
Q ss_pred hhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 031002 34 ELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLE 105 (167)
Q Consensus 34 ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~ 105 (167)
=|+.|++|-+...++.|.- +..-++++.++-+.+..+........-.-....++.++.|+..|+-+++.+.
T Consensus 11 ~~~~l~~~~~~~~~~a~a~-v~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 11 SLSLLVGVAAPWAAFAQAP-ISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHhhhHHHhcCCc-HHHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3466666544444444431 1223344555555555544332211000013345556666666665555444
No 42
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=50.44 E-value=42 Score=19.98 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=4.3
Q ss_pred CCCHHHHHHHH
Q 031002 118 SCTLEELQQIE 128 (167)
Q Consensus 118 ~ls~~eL~~Le 128 (167)
|+|++|..++-
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 34445544444
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=50.01 E-value=2.4e+02 Score=27.11 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=31.9
Q ss_pred eeeeecCCCccccccCchhHHHHHHHhhcccccc-C--CCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 031002 44 AVIIFSPRGKLSEFASSSMQETIERYLKHTKDTR-N--KQQPTEQNMQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 44 ~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~~~~-~--~~~~~~~~~e~l~~e~~kl~k~~~~l~~~ 107 (167)
|.-+|.|+|..--|+.|. -..|-..+...+ + .....+..++.++.+...+++++..++..
T Consensus 621 ~~~aytldg~~~~~~g~~----~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~ 683 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGPN----YRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQ 683 (1074)
T ss_pred ceeeeccCccccccCCCC----cceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688888655566665 111222222111 0 11112456777888888887766666543
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.95 E-value=73 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031002 123 ELQQIERQLEKSVSNIRA 140 (167)
Q Consensus 123 eL~~Le~~Le~~L~~Ir~ 140 (167)
.+.+++..|...+..|.+
T Consensus 9 ~l~~le~~l~~l~~~~~~ 26 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEE 26 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 45
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=49.91 E-value=12 Score=30.73 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=20.8
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~sp 60 (167)
+++-|..+|+++|++. ||.|+ |+.+
T Consensus 83 ~~l~G~n~~i~ayGqtGSGKT~Tm~G~~ 110 (356)
T cd01365 83 HAFEGYNVCLFAYGQTGSGKSYTMMGYK 110 (356)
T ss_pred HHhCCCceEEEEecCCCCCCeEEecCCC
Confidence 5789999999999996 47887 7774
No 46
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=49.78 E-value=76 Score=21.79 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031002 137 NIRARKNQVFNEQIAQLKEKVSVIKICFSV 166 (167)
Q Consensus 137 ~Ir~rk~~ll~~~~~~l~~k~~~l~~~~~~ 166 (167)
.||+. -+.|.++|..|..+...|.+||++
T Consensus 64 AVREE-Ve~Lk~qI~eL~er~~~Le~EN~l 92 (123)
T KOG4797|consen 64 AVREE-VEVLKEQIRELEERNSALERENSL 92 (123)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 456677777777777777777764
No 47
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.75 E-value=1.8e+02 Score=25.36 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 117 ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKI 162 (167)
Q Consensus 117 ~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~ 162 (167)
+..++.++.++..++...+..++.+...+ ..++..++++...|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQN 166 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35689999999999999999999887543 3455555555555443
No 48
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=49.00 E-value=54 Score=24.42 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~ 107 (167)
.+.|..++.+++++.+.-+..
T Consensus 64 ~~el~~eiekvkke~Eekq~~ 84 (182)
T PF08432_consen 64 KKELEEEIEKVKKEYEEKQKW 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 446777788887766655443
No 49
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=48.87 E-value=75 Score=20.87 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=46.3
Q ss_pred hhHHHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHHHHHHHH
Q 031002 61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGE--GLASCTLEELQQIERQLEKSVSNI 138 (167)
Q Consensus 61 ~v~~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~--~l~~ls~~eL~~Le~~Le~~L~~I 138 (167)
.+..++.+|......... ......-...+...+..+...++.|+......... .+ +++..|+..-..++...-..|
T Consensus 16 ~l~~~~~~~~~~~~~~~~-~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 16 RLESLYRRWQRLRSDTSS-SEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHH
Confidence 567777788776665440 00001122356677777788888887776554433 23 678888888877777665555
Q ss_pred H
Q 031002 139 R 139 (167)
Q Consensus 139 r 139 (167)
.
T Consensus 94 ~ 94 (97)
T PF09177_consen 94 K 94 (97)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=48.55 E-value=1.2e+02 Score=26.17 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 031002 119 CTLEELQQIERQLEKSVSN 137 (167)
Q Consensus 119 ls~~eL~~Le~~Le~~L~~ 137 (167)
+.-.|+++..+.||.-+..
T Consensus 439 ~a~qe~~q~lddlDkqI~q 457 (516)
T KOG4191|consen 439 MARQEFQQVLDDLDKQIEQ 457 (516)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466666666666654433
No 51
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=47.68 E-value=79 Score=23.58 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=23.3
Q ss_pred cceeeeee--cCCCccccccCc----------hhHHHHHHHhhccc
Q 031002 41 AEVAVIIF--SPRGKLSEFASS----------SMQETIERYLKHTK 74 (167)
Q Consensus 41 ~~v~livf--sp~gk~~~f~sp----------~v~~Vl~RY~~~~~ 74 (167)
|++++|+. ||+|+-|..-++ +...++.||.....
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~ 141 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAA 141 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHH
Confidence 57889998 899987653221 56777777776544
No 52
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.98 E-value=77 Score=20.43 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 031002 120 TLEELQQIERQLEKSVSNIR 139 (167)
Q Consensus 120 s~~eL~~Le~~Le~~L~~Ir 139 (167)
|.+=|.+|+..+..++..|.
T Consensus 2 S~EvleqLE~KIqqAvdtI~ 21 (79)
T PRK15422 2 SLEVFEKLEAKVQQAIDTIT 21 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44555556655555555543
No 53
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=46.62 E-value=87 Score=20.98 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 031002 146 FNEQIAQLKEKVSVIKICFSV 166 (167)
Q Consensus 146 l~~~~~~l~~k~~~l~~~~~~ 166 (167)
...|++.|..|+..|+-||.|
T Consensus 74 a~~qi~~Ls~kv~eLq~ENRv 94 (96)
T PF11365_consen 74 AREQINELSGKVMELQYENRV 94 (96)
T ss_pred HHHHHHHHhhHHHHHhhcccc
Confidence 456788999999999999976
No 54
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=46.23 E-value=53 Score=18.39 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNI 138 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~I 138 (167)
+++-.+...+.+.||..+...
T Consensus 21 ~l~~~~vl~~Sq~LD~lI~~y 41 (45)
T PF09388_consen 21 GLTDPEVLELSQELDKLINEY 41 (45)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 777888889999999887654
No 55
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=46.03 E-value=1.4e+02 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=26.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031002 113 GEGLASCTLEELQQIERQLEKSVSNIRARK 142 (167)
Q Consensus 113 g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk 142 (167)
|....+++..+|.......+..|..||.|-
T Consensus 114 ~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 114 NENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 447788999999999999999999999883
No 56
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=45.86 E-value=65 Score=26.03 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=30.7
Q ss_pred ceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCcccccc-CchhHHHHHHHhh
Q 031002 7 QMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFA-SSSMQETIERYLK 71 (167)
Q Consensus 7 ~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~-sp~v~~Vl~RY~~ 71 (167)
.+-+|.|.+.|..+=++ .||..+.+ |.| .|- .|.+++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 46688888888766332 46777765 444 233 4799999999876
No 57
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=45.63 E-value=30 Score=23.21 Aligned_cols=30 Identities=37% Similarity=0.387 Sum_probs=22.9
Q ss_pred hhhhhhhccCCcceeeeeecCCCccccccCc
Q 031002 30 KKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 30 KKa~ELs~LC~~~v~livfsp~gk~~~f~sp 60 (167)
-|..||--+-||- |.=.|||+|++.+|-++
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeCC
Confidence 4567787777764 44579999999998775
No 58
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=44.92 E-value=76 Score=25.32 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=29.5
Q ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031002 120 TLEELQQIER-QLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKICFS 165 (167)
Q Consensus 120 s~~eL~~Le~-~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~~~ 165 (167)
..+|+..+++ .+.+....-+.|+ +..++|+.|+++++.|...|+
T Consensus 200 e~qe~~kleRkrlrnreaa~Kcr~--rkLdrisrLEdkv~~lk~~n~ 244 (279)
T KOG0837|consen 200 EDQEKIKLERKRLRNREAASKCRK--RKLDRISRLEDKVKTLKIYNR 244 (279)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhh
Confidence 3445555554 3445544444444 667899999999999988875
No 59
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=44.20 E-value=1.1e+02 Score=24.58 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=33.8
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 111 LLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVS 158 (167)
Q Consensus 111 ~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~ 158 (167)
..-+.+.+|+.+||.+|...|-..+..|-+.-.+.+++. +.|..+.+
T Consensus 211 ~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEK-DsLaSElh 257 (285)
T PF06937_consen 211 YSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQEK-DSLASELH 257 (285)
T ss_pred cCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 344678899999999999999888888877766666443 34444443
No 60
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.80 E-value=1.2e+02 Score=27.96 Aligned_cols=90 Identities=19% Similarity=0.331 Sum_probs=41.3
Q ss_pred eeeeeecCCCccccccCc-----hhHHHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 031002 43 VAVIIFSPRGKLSEFASS-----SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLA 117 (167)
Q Consensus 43 v~livfsp~gk~~~f~sp-----~v~~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~ 117 (167)
+.|+.--..|+-++|||| ++..-.-+|.+.-.+-..+..+..- .....+..|..+++.++..- ....++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---dfEkpi~ele~ki~el~~~~---~~~~~~ 123 (762)
T PLN03229 50 LAVVAKIRKGKKHEYPWPADPDPNVKGGVLSYLSHFKPLKEKPKPVTL---DFEKPLVDLEKKIVDVRKMA---NETGLD 123 (762)
T ss_pred eEEEeeeccccccCCCCCCCCCCCcccchhhHhhccCCCCCCCCCCCc---chhhHHHHHHHHHHHHHhhh---hccccc
Confidence 333433445666666664 4554444555543322222211111 12234566666666664321 011111
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRA 140 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~ 140 (167)
+ -+|+..|+..++.....|-.
T Consensus 124 -~-~~ei~~Le~k~~~~~~~iy~ 144 (762)
T PLN03229 124 -F-SDQIISLESKYQQALKDLYT 144 (762)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHc
Confidence 2 25677777776666555543
No 61
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=43.40 E-value=1.7e+02 Score=24.92 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHH
Q 031002 86 NMQHLKHEAANMVKKIELLEVSKRKLLGE-GLASCTLEELQQIERQLEKSVSN 137 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~~r~~~g~-~l~~ls~~eL~~Le~~Le~~L~~ 137 (167)
....++....+++.....++..+....-| ...-++.+||..+...+...+..
T Consensus 256 ~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~ 308 (459)
T PF10337_consen 256 SLKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMIP 308 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777766655433 56679999999998877764443
No 62
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=42.59 E-value=19 Score=29.09 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=20.0
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~sp 60 (167)
+++.|..+|+++|++. ||.|+ |+++
T Consensus 73 ~~~~G~~~~i~~yG~tgSGKT~tl~G~~ 100 (328)
T cd00106 73 SVLEGYNGTIFAYGQTGSGKTYTMFGSP 100 (328)
T ss_pred HHhCCCceeEEEecCCCCCCeEEecCCC
Confidence 4578999999999996 57887 7753
No 63
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=42.15 E-value=46 Score=20.57 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031002 97 MVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNI 138 (167)
Q Consensus 97 l~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~I 138 (167)
++++++.++-.+-.+...-+.+-+.++|.+++..+++.-+.+
T Consensus 23 lr~eiealkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 23 LRKEIEALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Confidence 445555555544445555566777888888888888765554
No 64
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=42.04 E-value=44 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 031002 145 VFNEQIAQLKEKVSVIKICFS 165 (167)
Q Consensus 145 ll~~~~~~l~~k~~~l~~~~~ 165 (167)
-|.+|+..|+.+++.|+...+
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888876654
No 65
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=41.74 E-value=21 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=20.2
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~sp 60 (167)
+++-|..+|+++|++. ||.|+ |+.+
T Consensus 76 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 103 (333)
T cd01371 76 SVLEGYNGTIFAYGQTGTGKTFTMEGVR 103 (333)
T ss_pred HHhCCCceeEEecCCCCCCCcEeecCCC
Confidence 6789999999999986 47777 6653
No 66
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=41.71 E-value=22 Score=25.95 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=18.1
Q ss_pred ccCCcceeeeeecCCCcccc-ccC
Q 031002 37 VLCDAEVAVIIFSPRGKLSE-FAS 59 (167)
Q Consensus 37 ~LC~~~v~livfsp~gk~~~-f~s 59 (167)
.-|++.|-+++|||+.+.|. |..
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP 132 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIP 132 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEEEEcCCCceEEEEcC
Confidence 57999999999999998775 554
No 67
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=41.53 E-value=83 Score=20.04 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 031002 66 IERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 66 l~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~ 107 (167)
+-.|.+...........+.+.++.+.....+|+++++.|+.-
T Consensus 23 ~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 23 ILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456665444333222222345667888888999999888754
No 68
>PRK14625 hypothetical protein; Provisional
Probab=40.54 E-value=1.2e+02 Score=20.78 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------------cC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 88 QHLKHEAANMVKKIELLEVSKRKL---------------LG--------EGLASCTLEELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 88 e~l~~e~~kl~k~~~~l~~~~r~~---------------~g--------~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
..+-.+..+++++++.++..+... .| -+.+-+..+|..-|++.|-.+.+....+..+
T Consensus 5 ~~mmkqaq~mQ~km~~~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~ll~~eD~e~LeDLI~aA~NdA~~k~~~ 84 (109)
T PRK14625 5 GGLMKQAQAMQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQPGEGEVIADLIVAAHADAKKKLDA 84 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777666442 11 1223467778888999999998888888888
Q ss_pred HHHHHHHHH
Q 031002 145 VFNEQIAQL 153 (167)
Q Consensus 145 ll~~~~~~l 153 (167)
...++++.+
T Consensus 85 ~~~~~m~~~ 93 (109)
T PRK14625 85 KQAQLMQEA 93 (109)
T ss_pred HHHHHHHHH
Confidence 777776654
No 69
>PHA02109 hypothetical protein
Probab=40.30 E-value=59 Score=24.35 Aligned_cols=12 Identities=8% Similarity=0.064 Sum_probs=8.7
Q ss_pred HHHHHHHhhccc
Q 031002 63 QETIERYLKHTK 74 (167)
Q Consensus 63 ~~Vl~RY~~~~~ 74 (167)
-.|+.||.+.-.
T Consensus 138 L~VL~R~R~~~~ 149 (233)
T PHA02109 138 LAVLTRTRRIET 149 (233)
T ss_pred chhhhhhhhhhh
Confidence 568888887544
No 70
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=40.30 E-value=15 Score=21.78 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=32.2
Q ss_pred cccceeeecCCCCccccccccccchhhhhhhhh--ccCCcceeeeeecCCCc
Q 031002 4 GKTQMRRIENATSRQVTFSKRRNGLLKKAFELS--VLCDAEVAVIIFSPRGK 53 (167)
Q Consensus 4 ~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs--~LC~~~v~livfsp~gk 53 (167)
+|-..--|..+....-||+--+--.-.|.+|+| +||| -.|+|+
T Consensus 6 kkcnvisidgkkkksdtysypklvvenktyefssfvlcg-------etpdgr 50 (66)
T PF13082_consen 6 KKCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCG-------ETPDGR 50 (66)
T ss_pred ccccEEEeccccccCCcccCceEEEeCceEEEEEEEEEc-------cCCCCc
Confidence 345556677777888888888888889999986 6777 456775
No 71
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=39.87 E-value=95 Score=19.78 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=26.4
Q ss_pred HHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 031002 66 IERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSK 108 (167)
Q Consensus 66 l~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~ 108 (167)
+-.|.+...........+.+.++.+-....+|+++++.|+.-+
T Consensus 23 ~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 23 ILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566664433222222223456778888899999998887543
No 72
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=39.64 E-value=26 Score=29.37 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=29.7
Q ss_pred hhhhccCCcce--eeeeecCCCccccccCc-----hhHHHHHHHhhccccc
Q 031002 33 FELSVLCDAEV--AVIIFSPRGKLSEFASS-----SMQETIERYLKHTKDT 76 (167)
Q Consensus 33 ~ELs~LC~~~v--~livfsp~gk~~~f~sp-----~v~~Vl~RY~~~~~~~ 76 (167)
.-|||+||-+| |||--...| |-|+.| ++++.+..|...+-..
T Consensus 367 yalSV~~~~~V~HClIy~tatG--~GFa~pyn~y~tlk~lV~hY~h~SLe~ 415 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATG--FGFAEPYNLYSTLKELVLHYQHTSLEQ 415 (464)
T ss_pred eEEEEEECCceeeeEEeecccc--ccccchhHHHHHHHHHHHHHhhhhHHh
Confidence 56899999777 665544445 556665 7888888888866543
No 73
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=39.24 E-value=1.7e+02 Score=22.22 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031002 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKICF 164 (167)
Q Consensus 121 ~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~~ 164 (167)
.++|..+...|+..-..+-++-. -+..+...|-.++..|+++|
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~r-qlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQAR-QLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666533 34455667777777787777
No 74
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.17 E-value=1.2e+02 Score=20.44 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC--CCHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLEVSKRKLLGE-GLAS--CTLEELQQIERQLEKSVSNIR 139 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~-~l~~--ls~~eL~~Le~~Le~~L~~Ir 139 (167)
.+++.+...+.....++..++..+.++.+. ++.. +.+.++..-...++..+..|.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666667777777777777766555432 2222 223344444444444444443
No 75
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=39.13 E-value=16 Score=25.14 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=26.4
Q ss_pred cccccccccchhh---------hhhhhhccCCcceeeeeecCCCc
Q 031002 18 QVTFSKRRNGLLK---------KAFELSVLCDAEVAVIIFSPRGK 53 (167)
Q Consensus 18 ~~tf~kR~~gl~K---------Ka~ELs~LC~~~v~livfsp~gk 53 (167)
...||+=|+-|-+ |+.|+.+-||.|+-+++..|.|.
T Consensus 51 ~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 51 AHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred EEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3345665554544 56899999999999999988553
No 76
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=38.96 E-value=31 Score=21.17 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=19.1
Q ss_pred CCcceeeeeecCCCccccccCc-hhHHHHHH
Q 031002 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIER 68 (167)
Q Consensus 39 C~~~v~livfsp~gk~~~f~sp-~v~~Vl~R 68 (167)
|+.--.++|+ |++..|...+| .+..|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHh
Confidence 5443344444 77778887777 78888875
No 77
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=38.67 E-value=23 Score=29.06 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=20.7
Q ss_pred hccCCcceeeeeecCCC--cccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPRG--KLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~g--k~~~-f~sp 60 (167)
+++-|..+|+++|++.| |.|+ |+.+
T Consensus 83 ~~l~G~n~ti~aYGqtGSGKTyTm~G~~ 110 (345)
T cd01368 83 DLLKGKNSLLFTYGVTNSGKTYTMQGSP 110 (345)
T ss_pred HHhCCCceEEEEeCCCCCCCeEEecCCC
Confidence 56789999999999975 8888 7765
No 78
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=38.54 E-value=2.7e+02 Score=26.80 Aligned_cols=21 Identities=19% Similarity=-0.048 Sum_probs=11.4
Q ss_pred hhccCCcceeeeeecCCCccc
Q 031002 35 LSVLCDAEVAVIIFSPRGKLS 55 (167)
Q Consensus 35 Ls~LC~~~v~livfsp~gk~~ 55 (167)
+-.+||..+-+---+.++.+|
T Consensus 141 ~le~vGl~~~~~~s~s~~~~~ 161 (1195)
T KOG4643|consen 141 LLELVGLEKKYRESRSGKELY 161 (1195)
T ss_pred HHHHhcccceeeccccCCCCC
Confidence 346777776655444444444
No 79
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=38.31 E-value=15 Score=29.79 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.8
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccC
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~s 59 (167)
+++-|..+|+++|++. ||.|+ |++
T Consensus 69 ~~l~G~n~~i~ayG~tgSGKT~Tm~G~ 95 (335)
T PF00225_consen 69 SVLDGYNATIFAYGQTGSGKTYTMFGS 95 (335)
T ss_dssp HHHTT-EEEEEEEESTTSSHHHHHTBS
T ss_pred HhhcCCceEEEeecccccccccccccc
Confidence 5789999999999886 57776 665
No 80
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=38.27 E-value=73 Score=28.93 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=23.5
Q ss_pred eeecCCCccccccCchhHHHHHHHhhccc
Q 031002 46 IIFSPRGKLSEFASSSMQETIERYLKHTK 74 (167)
Q Consensus 46 ivfsp~gk~~~f~sp~v~~Vl~RY~~~~~ 74 (167)
+.||-+|-++.-|-|++++++.||...-.
T Consensus 156 ~L~S~q~~LP~LPlP~v~DTV~rYL~Smk 184 (764)
T KOG3716|consen 156 MLYSFQRSLPRLPLPAVKDTVTRYLDSMK 184 (764)
T ss_pred chhhhhccCcCCCCCcHHHHHHHHHHhcc
Confidence 44777788887888999999999998444
No 81
>PRK14627 hypothetical protein; Provisional
Probab=38.10 E-value=1.2e+02 Score=20.26 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQL 153 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l 153 (167)
-++.++..-|++.|-.+++....+..+...+.+..+
T Consensus 57 ll~~ed~e~LeDLI~aA~N~A~~k~~~~~~~~m~~~ 92 (100)
T PRK14627 57 VVDPDDVEMLQDLLLVAINDASRKAQQLAEERMQPL 92 (100)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366678888999999999998888888877776654
No 82
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=37.90 E-value=11 Score=26.53 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=28.4
Q ss_pred ecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCcccc
Q 031002 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSE 56 (167)
Q Consensus 11 I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~ 56 (167)
|.++.....||.-.-..+..+.-+|+.+ |++.|+|.|+.|-
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~-----Cf~a~~~~gk~f~ 81 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKM-----CFKAYSPDGKEFK 81 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT------EEEEEETTS-EEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccc-----hhhhccccCCEEE
Confidence 4566667778888888888888889887 6889999997663
No 83
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.74 E-value=2e+02 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.306 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Q 031002 123 ELQQIERQLEKSVSNIRARKNQV--FNEQIAQLKEKVSVIKICF 164 (167)
Q Consensus 123 eL~~Le~~Le~~L~~Ir~rk~~l--l~~~~~~l~~k~~~l~~~~ 164 (167)
+...|...|...........+++ |..++-.||.+.+.+.-||
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~En 257 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAEN 257 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34445555555555555554443 3356667777777776665
No 84
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=36.90 E-value=87 Score=20.35 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEK 133 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~ 133 (167)
.||.++|..|......
T Consensus 47 ~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 47 KMTPEELAAFLRAMKS 62 (83)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4788888888766543
No 85
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=36.61 E-value=20 Score=26.56 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=19.6
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~sp 60 (167)
+++.|-++|+++|++. ||.|+ |+.+
T Consensus 18 ~~~~G~n~~i~~yG~tGsGKT~Tm~G~~ 45 (186)
T cd01363 18 SALDGYNVCIFAYGQTGSGKTYTMEGKR 45 (186)
T ss_pred HHhCCcceeEEEECCCCCcceEecCCCC
Confidence 5678999999999997 57777 6543
No 86
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=36.32 E-value=23 Score=25.33 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=18.9
Q ss_pred hhccCCcceeeeeecCCCcccccc
Q 031002 35 LSVLCDAEVAVIIFSPRGKLSEFA 58 (167)
Q Consensus 35 Ls~LC~~~v~livfsp~gk~~~f~ 58 (167)
+.++||++|-++|-+-+.+-..||
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 588999999999998887644443
No 87
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=36.32 E-value=26 Score=28.71 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=20.1
Q ss_pred hccCCcceeeeeecCCC--cccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPRG--KLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~g--k~~~-f~sp 60 (167)
+++-|..+|+++|++.| |.|+ |+.+
T Consensus 82 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~ 109 (338)
T cd01370 82 GVLNGYNATVFAYGATGAGKTHTMLGTD 109 (338)
T ss_pred HHHCCCCceEEeeCCCCCCCeEEEcCCC
Confidence 56889999999999964 7787 6653
No 88
>KOG4316 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.12 E-value=19 Score=26.06 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=26.6
Q ss_pred hhhhccCCcceeeeee----cCC-C-ccccccCc-----hhHHHHHHHhhccc
Q 031002 33 FELSVLCDAEVAVIIF----SPR-G-KLSEFASS-----SMQETIERYLKHTK 74 (167)
Q Consensus 33 ~ELs~LC~~~v~livf----sp~-g-k~~~f~sp-----~v~~Vl~RY~~~~~ 74 (167)
.++++||+.+.-+.-- -|. - ...-|+.- .|+.||+||+++.-
T Consensus 43 ~a~~~lcq~p~vla~r~a~~~Ps~~r~~t~Fs~~kGkrktvkaVldRFkRL~~ 95 (172)
T KOG4316|consen 43 SARNLLCQHPSVLANRMAPVLPSVVRSLTYFSARKGKRKTVKAVLDRFKRLHC 95 (172)
T ss_pred hHHHhHhcCcHHHHhccCCCCcchhhhhhhhhhhhcccccHHHHHHHHHhccc
Confidence 6889999887654311 122 1 22235442 59999999999654
No 89
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=35.85 E-value=25 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=19.7
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~sp 60 (167)
+++-|..+++++|++. ||.|+ |+.+
T Consensus 71 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~~ 98 (325)
T cd01369 71 DVLNGYNGTIFAYGQTGSGKTYTMEGPP 98 (325)
T ss_pred HHHcCccceEEEeCCCCCCceEEecCCC
Confidence 4688999999999986 57777 5554
No 90
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=34.81 E-value=28 Score=28.18 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=19.7
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccC
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~s 59 (167)
+++-|..+|++.|++. ||.|+ |+.
T Consensus 72 ~~~~G~~~~i~ayG~tgSGKT~tl~G~ 98 (329)
T cd01366 72 SALDGYNVCIFAYGQTGSGKTYTMEGP 98 (329)
T ss_pred HHhCCCceEEEEeCCCCCCCcEEecCC
Confidence 5678999999999986 57887 665
No 91
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=34.59 E-value=2.1e+02 Score=21.91 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=34.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Q 031002 112 LGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFN----------EQIAQLKEKVSVIKIC 163 (167)
Q Consensus 112 ~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~----------~~~~~l~~k~~~l~~~ 163 (167)
.|.+..-.....|..+...|+..|..++...+.+-. .++..|..+++.+..-
T Consensus 129 ~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~k 190 (221)
T PF05700_consen 129 YGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSK 190 (221)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555566788888888888888888887776544 3444566666554443
No 92
>PRK00708 sec-independent translocase; Provisional
Probab=34.36 E-value=76 Score=24.40 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=18.2
Q ss_pred hhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhc
Q 031002 34 ELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKH 72 (167)
Q Consensus 34 ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~ 72 (167)
||-++. =|+||||+|.. ++...- .+...+.+++++
T Consensus 8 ELlvI~--vVaLvV~GPkr-LP~~~R-~lGk~v~k~R~~ 42 (209)
T PRK00708 8 ELLVIA--IVLIVVVGPKD-LPPMLR-AFGKMTARMRKM 42 (209)
T ss_pred HHHHHH--HHHHhhcCchH-HHHHHH-HHHHHHHHHHHH
Confidence 444443 37889999965 332111 344444444443
No 93
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=34.02 E-value=1.8e+02 Score=20.87 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=49.3
Q ss_pred eecCCCccccccCchhHHHHHHHhhccccccCCCCCchhhHH-HHHHHHHHHHHHH-HHHHHHHHH-hc----CCCCCCC
Q 031002 47 IFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQ-HLKHEAANMVKKI-ELLEVSKRK-LL----GEGLASC 119 (167)
Q Consensus 47 vfsp~gk~~~f~sp~v~~Vl~RY~~~~~~~~~~~~~~~~~~e-~l~~e~~kl~k~~-~~l~~~~r~-~~----g~~l~~l 119 (167)
||.|.+ +..|+.+ +|+...+.++.+.+.....+..++ .+..++.+|+.+- ..++..+.. +. +..-.++
T Consensus 1 vf~~~~-pv~fS~~----ll~~L~~s~etD~sR~q~~e~~iq~Rva~eL~~L~~~~~~~~~~~l~~~~~~ed~~~~~~~l 75 (142)
T PF07956_consen 1 VFTPST-PVQFSQS----LLSQLQSSTETDSSRAQTLELHIQERVAEELKRLEEEELKKFEEALEKSLLSEDEKDQDPGL 75 (142)
T ss_pred CCCCCC-CcccCHH----HHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 466655 4445543 344444443333221111122222 3556666665432 223222222 22 2345667
Q ss_pred CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 031002 120 TLEELQQIERQLEKSVS---NIRARKNQVFNEQIAQLKEKVSV 159 (167)
Q Consensus 120 s~~eL~~Le~~Le~~L~---~Ir~rk~~ll~~~~~~l~~k~~~ 159 (167)
|...+..=...|...|. .++........+.+...+..+-.
T Consensus 76 Ss~~v~~~i~~L~~kLe~~~kl~~~~~~~~~~~v~~aR~~vv~ 118 (142)
T PF07956_consen 76 SSKSVNEEIEKLREKLEERKKLRELKEEKNSEEVEKARSAVVR 118 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 77777777777776666 44444433323334444444433
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.75 E-value=2.2e+02 Score=21.79 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 031002 89 HLKHEAANMVKKIELLEVSKRKLL 112 (167)
Q Consensus 89 ~l~~e~~kl~k~~~~l~~~~r~~~ 112 (167)
.....+..++.+++.++..+....
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888877665543
No 95
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=33.52 E-value=34 Score=27.69 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=19.9
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccCc
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~sp 60 (167)
+++-|..+|+++|++. ||.|+ |+.+
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 102 (319)
T cd01376 75 HLLSGQNATVFAYGSTGAGKTHTMLGDP 102 (319)
T ss_pred HHhCCCceEEEEECCCCCCCcEEEeCCc
Confidence 5778999999999986 47887 6543
No 96
>PRK14622 hypothetical protein; Provisional
Probab=33.42 E-value=1.5e+02 Score=19.95 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQL 153 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l 153 (167)
-+..++-.-|++.|-.+++....+..++..+++..+
T Consensus 57 ~l~~ed~e~LeDLI~aA~N~A~~k~~~~~~~~m~~~ 92 (103)
T PRK14622 57 AVDPNDKAMLEDLVTAAVNAAVEKARTAADESMSKA 92 (103)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888899999999999888888887777654
No 97
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=33.33 E-value=34 Score=27.73 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.2
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccC
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~s 59 (167)
+++-|..+|+++|++. ||.|+ |++
T Consensus 74 ~~~~G~~~~i~~yG~tgSGKT~tl~G~ 100 (335)
T smart00129 74 SVLEGYNATIFAYGQTGSGKTYTMSGT 100 (335)
T ss_pred HHhcCCceeEEEeCCCCCCCceEecCC
Confidence 3678999999999996 57777 665
No 98
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=32.96 E-value=3.2e+02 Score=23.52 Aligned_cols=78 Identities=10% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 89 HLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEEL-------QQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIK 161 (167)
Q Consensus 89 ~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL-------~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~ 161 (167)
.+..++.-+..+++..++-...+.+.+-+- +.+++ ..=+..|...|..+.++-..+-.+-...-.+++....
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~-~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQNQDV-SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666655555555443331 33332 2223344444444444444433333333344455566
Q ss_pred HhhccC
Q 031002 162 ICFSVW 167 (167)
Q Consensus 162 ~~~~~~ 167 (167)
++++.|
T Consensus 226 ~~~~~~ 231 (447)
T KOG2751|consen 226 EEDQYW 231 (447)
T ss_pred HHHHHH
Confidence 666655
No 99
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.83 E-value=1.2e+02 Score=18.71 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Q 031002 124 LQQIERQLEKSVSNIRARK--NQVFNEQIAQLKEKVSVIKICF 164 (167)
Q Consensus 124 L~~Le~~Le~~L~~Ir~rk--~~ll~~~~~~l~~k~~~l~~~~ 164 (167)
|..|+..|+..+.....=+ +.++.++...++..-..|.+-|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554443322 2344444444444444444433
No 100
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=32.72 E-value=30 Score=23.41 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=34.2
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcc----eeeeeecCCCccccccCc
Q 031002 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAE----VAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 1 M~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~----v~livfsp~gk~~~f~sp 60 (167)
|||++.+.+.|-. .|+-.+.|+-..++= -+|.++.|-++ +++++.+..|--|++--|
T Consensus 1 MG~rr~krr~~ik--~~~~~L~k~FtCp~C-ghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~ 61 (104)
T COG4888 1 MGRRRRKRRKIIK--RRPQVLPKTFTCPRC-GHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVP 61 (104)
T ss_pred CCcccccccccCc--ccCccCCceEecCcc-CCeeeeEEEEEecCceeEEEcccCcceEEEecc
Confidence 9999988887654 233334444444331 25566666554 467788888876665433
No 101
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=32.61 E-value=34 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=19.4
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccC
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~s 59 (167)
.++-|..+|+++|++. ||.|+ |+.
T Consensus 68 ~~l~G~n~~i~ayG~tgSGKT~T~~G~ 94 (321)
T cd01374 68 SALEGYNGTIFAYGQTSSGKTFTMSGD 94 (321)
T ss_pred HHHCCCceeEEeecCCCCCCceeccCC
Confidence 4578999999999986 57887 665
No 102
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=32.40 E-value=30 Score=27.25 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=23.2
Q ss_pred hhhhccCCcceeeeeecCCCccccccCc
Q 031002 33 FELSVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 33 ~ELs~LC~~~v~livfsp~gk~~~f~sp 60 (167)
.+|.-.+|++|+|||+.+.|+++--+.+
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~ 160 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQV 160 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCC
Confidence 4566678999999999999998876665
No 103
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=32.26 E-value=32 Score=27.90 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=19.8
Q ss_pred hccCCcceeeeeecCC--Ccccc-ccC
Q 031002 36 SVLCDAEVAVIIFSPR--GKLSE-FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~--gk~~~-f~s 59 (167)
+++.|..+|++.|++. ||.|+ |++
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~ 105 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGD 105 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCc
Confidence 5788999999999986 47887 665
No 104
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=32.20 E-value=32 Score=29.71 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=25.0
Q ss_pred hhccCCcceee---------eeecCCCccccccCchhHHHH----HHHhh
Q 031002 35 LSVLCDAEVAV---------IIFSPRGKLSEFASSSMQETI----ERYLK 71 (167)
Q Consensus 35 Ls~LC~~~v~l---------ivfsp~gk~~~f~sp~v~~Vl----~RY~~ 71 (167)
++-.|+++++. .+.-=+|+.|.|||+.-+.+. +||..
T Consensus 382 ~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~~C~~~F~~ePerY~~ 431 (465)
T cd01057 382 LCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGCEWIFEQEPERYAG 431 (465)
T ss_pred CCCCCCCeeccccCcccccceEEEECCEEEEecCHHHHHHHHHCHHHHhc
Confidence 67778888772 222337899999999556665 45654
No 105
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=32.00 E-value=1.2e+02 Score=21.40 Aligned_cols=20 Identities=5% Similarity=0.323 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031002 122 EELQQIERQLEKSVSNIRAR 141 (167)
Q Consensus 122 ~eL~~Le~~Le~~L~~Ir~r 141 (167)
++-.+|...-++.++.+...
T Consensus 89 ~eYk~llk~y~~~~~~L~k~ 108 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKE 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 106
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=31.89 E-value=1.5e+02 Score=21.36 Aligned_cols=19 Identities=37% Similarity=0.484 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031002 123 ELQQIERQLEKSVSNIRAR 141 (167)
Q Consensus 123 eL~~Le~~Le~~L~~Ir~r 141 (167)
++.-++..|=..|..|..|
T Consensus 66 ~~~lie~slw~~L~~ItDk 84 (146)
T PF07295_consen 66 DLQLIEESLWDELSSITDK 84 (146)
T ss_pred cHHHHHHHHHHHHHhhhch
Confidence 3455555555555555555
No 107
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=31.68 E-value=70 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.494 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 121 LEELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 121 ~~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
++||..||..+.+++..|++..+.
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999988654
No 108
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.68 E-value=2.7e+02 Score=22.28 Aligned_cols=33 Identities=12% Similarity=0.408 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQL 153 (167)
Q Consensus 120 s~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l 153 (167)
+-.++..|...|+..-.+|++|. .+|.++.-.+
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~-~~l~~raRAm 110 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQ-ELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34678888888888888888884 4444444333
No 109
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=31.57 E-value=1.7e+02 Score=20.04 Aligned_cols=16 Identities=6% Similarity=0.258 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 031002 129 RQLEKSVSNIRARKNQ 144 (167)
Q Consensus 129 ~~Le~~L~~Ir~rk~~ 144 (167)
..|+..+..+.++..+
T Consensus 79 ~~l~~~~~~l~~~i~~ 94 (124)
T TIGR02051 79 ELASRKLKSVQAKMAD 94 (124)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555444
No 110
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=31.56 E-value=1.5e+02 Score=19.43 Aligned_cols=43 Identities=12% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVI 160 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l 160 (167)
|++++++..+....+.....+=..+..-+.+++..|+.-...|
T Consensus 57 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l 99 (103)
T cd01106 57 GFSLKEIKELLKDPSEDLLEALREQKELLEEKKERLDKLIKTI 99 (103)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777766643333333333444455555555554444
No 111
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=31.36 E-value=22 Score=28.68 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=13.3
Q ss_pred hccCCcceeeeeecCC
Q 031002 36 SVLCDAEVAVIIFSPR 51 (167)
Q Consensus 36 s~LC~~~v~livfsp~ 51 (167)
.-+||++|||+||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 4579999999999664
No 112
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.32 E-value=32 Score=18.09 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=13.3
Q ss_pred ceeeeeecCCCccccccCc
Q 031002 42 EVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 42 ~v~livfsp~gk~~~f~sp 60 (167)
.-.-..|||+|+-..|++.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 4455779999998878763
No 113
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=31.20 E-value=16 Score=23.41 Aligned_cols=37 Identities=27% Similarity=0.509 Sum_probs=26.3
Q ss_pred ccccccccccchhhh---------hhhhhccCCcceeeeeecCCCc
Q 031002 17 RQVTFSKRRNGLLKK---------AFELSVLCDAEVAVIIFSPRGK 53 (167)
Q Consensus 17 R~~tf~kR~~gl~KK---------a~ELs~LC~~~v~livfsp~gk 53 (167)
+.+.||+-|++|-.| +.|+.+-||.|+-++..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 334467777677555 5789999999999999888775
No 114
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=30.80 E-value=1.1e+02 Score=17.97 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031002 116 LASCTLEELQQIERQLEKSVSNIRARK 142 (167)
Q Consensus 116 l~~ls~~eL~~Le~~Le~~L~~Ir~rk 142 (167)
+.++|.+||......+...|-..+-++
T Consensus 2 lr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 2 LREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888777543
No 115
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=30.77 E-value=2.1e+02 Score=20.98 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=8.2
Q ss_pred hhhhhccCCcceee
Q 031002 32 AFELSVLCDAEVAV 45 (167)
Q Consensus 32 a~ELs~LC~~~v~l 45 (167)
..|+|-+||+.+-.
T Consensus 4 I~evA~~~gvs~~t 17 (172)
T cd04790 4 ISQLARQFGLSRST 17 (172)
T ss_pred HHHHHHHHCcCHHH
Confidence 45666666665543
No 116
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.72 E-value=2.1e+02 Score=20.66 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=9.2
Q ss_pred hhHHHHHHHhhccc
Q 031002 61 SMQETIERYLKHTK 74 (167)
Q Consensus 61 ~v~~Vl~RY~~~~~ 74 (167)
.++.|.+.|.....
T Consensus 51 ~~q~I~~~f~~~t~ 64 (143)
T PRK11546 51 AWQKIHNDFYAQTS 64 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 47777777776444
No 117
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.59 E-value=5.4e+02 Score=25.40 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQV------FNEQIAQLKEKVSVIK 161 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~l------l~~~~~~l~~k~~~l~ 161 (167)
+.++++|..-...+...+..++.....+ +.+++..|+.++..+.
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888888888885544442 2345555655554443
No 118
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=30.47 E-value=1.4e+02 Score=21.56 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 113 GEGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 113 g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
+-++..||+++|..|.+++|.-+.-+..--..|-
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~ 40 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDSLNALK 40 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999988876655544443
No 119
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=30.41 E-value=81 Score=22.46 Aligned_cols=10 Identities=20% Similarity=-0.001 Sum_probs=4.5
Q ss_pred hhhhccCCcc
Q 031002 33 FELSVLCDAE 42 (167)
Q Consensus 33 ~ELs~LC~~~ 42 (167)
.|+|-++|+.
T Consensus 5 gevA~~~Gvs 14 (142)
T TIGR01950 5 GELAKRSGVA 14 (142)
T ss_pred HHHHHHHCcC
Confidence 3444444443
No 120
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=30.34 E-value=33 Score=19.31 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=17.2
Q ss_pred CCcce---eeeeecCCCccccccCchhHHH
Q 031002 39 CDAEV---AVIIFSPRGKLSEFASSSMQET 65 (167)
Q Consensus 39 C~~~v---~livfsp~gk~~~f~sp~v~~V 65 (167)
||..| +-.-..-+|+.|.|+|+.-..+
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~C~~~ 35 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEGCKEK 35 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHHHHHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHHHHHH
Confidence 66666 5555566899999999854433
No 121
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.31 E-value=5.1e+02 Score=25.07 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 119 CTLEELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 119 ls~~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
-..+++..+...+++.-..|.+...-
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~ 763 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERA 763 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777776666666665443
No 122
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=29.95 E-value=53 Score=18.81 Aligned_cols=25 Identities=16% Similarity=0.503 Sum_probs=18.9
Q ss_pred eeeecCCCccccccCc-hhHHHHHHH
Q 031002 45 VIIFSPRGKLSEFASS-SMQETIERY 69 (167)
Q Consensus 45 livfsp~gk~~~f~sp-~v~~Vl~RY 69 (167)
+.||-|+|..++|+.+ ++.+++...
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence 3578899999889886 677777543
No 123
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=29.88 E-value=53 Score=21.16 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=22.3
Q ss_pred ceeeeeecCCC--ccccccCc-hhHHHHHHHhh
Q 031002 42 EVAVIIFSPRG--KLSEFASS-SMQETIERYLK 71 (167)
Q Consensus 42 ~v~livfsp~g--k~~~f~sp-~v~~Vl~RY~~ 71 (167)
.+-|+|++.++ +++.++.+ ....++.+|..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T 40 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT 40 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccC
Confidence 46688888887 46665554 78888999876
No 124
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.63 E-value=2e+02 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031002 122 EELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 122 ~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
.++..-...+...+..+..+..+
T Consensus 77 ~~~~~~~~~l~~~i~~Le~~l~~ 99 (134)
T cd04779 77 REVAQEVQLVCDQIDGLEHRLKQ 99 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 125
>PRK14626 hypothetical protein; Provisional
Probab=29.40 E-value=1.9e+02 Score=19.76 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------------CC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLL---------------GE--------GLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~---------------g~--------~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
+..+-.+..+++.+++.++.++.... |. +.+-++.++..-|++.|-.+++..-.+..
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A~~k~~ 86 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEASRRSK 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666677766666665421 21 22235666777888888888888888888
Q ss_pred HHHHHHHHHH
Q 031002 144 QVFNEQIAQL 153 (167)
Q Consensus 144 ~ll~~~~~~l 153 (167)
+...+.+..+
T Consensus 87 ~~~~e~m~~~ 96 (110)
T PRK14626 87 EVMGEKMTQA 96 (110)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 126
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.39 E-value=2.2e+02 Score=20.58 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 89 HLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 89 ~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
.+...+..+..+++.++..+..+-+ +....|.+|...+........+..+.||.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666555555544444 33336777777777777777777777764
No 127
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.29 E-value=1.7e+02 Score=28.06 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcc
Q 031002 128 ERQLEKSVSNIRARKNQ-VFNEQIAQLKEKVSVIKICFSV 166 (167)
Q Consensus 128 e~~Le~~L~~Ir~rk~~-ll~~~~~~l~~k~~~l~~~~~~ 166 (167)
..+|+.-|...|+|-+. =+..+|-+|+++...+..+|.+
T Consensus 280 keMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdt 319 (1195)
T KOG4643|consen 280 KEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDT 319 (1195)
T ss_pred HHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhh
Confidence 34566666666666544 2345777777777777777653
No 128
>KOG3718 consensus Carnitine O-acyltransferase CROT [Lipid transport and metabolism]
Probab=29.23 E-value=1.1e+02 Score=26.74 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=23.3
Q ss_pred ecCCCccccccCchhHHHHHHHhhccccc
Q 031002 48 FSPRGKLSEFASSSMQETIERYLKHTKDT 76 (167)
Q Consensus 48 fsp~gk~~~f~sp~v~~Vl~RY~~~~~~~ 76 (167)
||-.+.+++-|=|+.++.+++|.....+-
T Consensus 14 Fs~qdsLPSLPlPeLeETleKYl~s~~pf 42 (609)
T KOG3718|consen 14 FSFQDSLPSLPLPELEETLEKYLSSIQPF 42 (609)
T ss_pred ccccccCCCCCCchHHHHHHHHHHhcccC
Confidence 66677778888899999999999965543
No 129
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=29.00 E-value=57 Score=26.56 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=21.7
Q ss_pred eeeecCCCcccc--ccCchhHHHHHHHhhccc
Q 031002 45 VIIFSPRGKLSE--FASSSMQETIERYLKHTK 74 (167)
Q Consensus 45 livfsp~gk~~~--f~sp~v~~Vl~RY~~~~~ 74 (167)
||||||+..+.. -.-+.+..|++-|+....
T Consensus 111 Vicf~Pnh~ltLp~m~~~~i~~vv~aw~~~~~ 142 (354)
T KOG2958|consen 111 VICFSPNHNLTLPLMDVVEIRDVVDAWKKLYN 142 (354)
T ss_pred EEEeCCccccccccCCHHHHHHHHHHHHHHHH
Confidence 688999987553 333589999988877543
No 130
>PRK11637 AmiB activator; Provisional
Probab=28.32 E-value=3.6e+02 Score=22.71 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLE 105 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~ 105 (167)
++.++.++..+++++..++
T Consensus 49 l~~l~~qi~~~~~~i~~~~ 67 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQ 67 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 131
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=28.06 E-value=2.5e+02 Score=22.68 Aligned_cols=64 Identities=19% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCccccccccccchh---------hhhhhhhccCCcceeeeeecCCCccc-------cccCc-----hhHHHHHHHhhcc
Q 031002 15 TSRQVTFSKRRNGLL---------KKAFELSVLCDAEVAVIIFSPRGKLS-------EFASS-----SMQETIERYLKHT 73 (167)
Q Consensus 15 ~~R~~tf~kR~~gl~---------KKa~ELs~LC~~~v~livfsp~gk~~-------~f~sp-----~v~~Vl~RY~~~~ 73 (167)
+.+.+.||+-|..|- -+.-..+|-||-|.-..+.-|+|..| .|+.. +.+++|..-++..
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~~a 259 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKETA 259 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhhcC
Confidence 345566666666454 44467899999998877777777532 24432 6888876555544
Q ss_pred ccccC
Q 031002 74 KDTRN 78 (167)
Q Consensus 74 ~~~~~ 78 (167)
+.+.+
T Consensus 260 PeeSy 264 (359)
T KOG4311|consen 260 PEESY 264 (359)
T ss_pred Cchhh
Confidence 44433
No 132
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=28.00 E-value=4e+02 Score=23.27 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Q 031002 114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQ---IAQLKEKVSVIKICF 164 (167)
Q Consensus 114 ~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~---~~~l~~k~~~l~~~~ 164 (167)
..+...+-+.|..|..=|.+.|...+.+..++-.++ -..|..+++.|.+-|
T Consensus 128 ~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n 181 (475)
T PRK10361 128 RRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLN 181 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777778888888888877776543 335666666666554
No 133
>PLN02939 transferase, transferring glycosyl groups
Probab=27.94 E-value=3.4e+02 Score=26.02 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031002 128 ERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKICF 164 (167)
Q Consensus 128 e~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~~ 164 (167)
+..|...-..|.+. -++.++.+..+|...+.|.+|+
T Consensus 364 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 399 (977)
T PLN02939 364 EERLQASDHEIHSY-IQLYQESIKEFQDTLSKLKEES 399 (977)
T ss_pred HHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444 3577788888888888888876
No 134
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=27.83 E-value=30 Score=28.59 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=20.3
Q ss_pred hhhhhhccCCcceeeeeecCC--Ccccccc
Q 031002 31 KAFELSVLCDAEVAVIIFSPR--GKLSEFA 58 (167)
Q Consensus 31 Ka~ELs~LC~~~v~livfsp~--gk~~~f~ 58 (167)
.+-.-++|||+.++++.|+.. |-.|.|.
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred cceeeeeeechhheeeeeeccCCCcccccc
Confidence 344568899999999999883 3445454
No 135
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=27.64 E-value=62 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=39.8
Q ss_pred cchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhccc
Q 031002 26 NGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (167)
Q Consensus 26 ~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~ 74 (167)
.+++++|.||++=--+++.++=||... ++..+.|.|-+.|..|.+.+.
T Consensus 446 ~e~i~t~~elTvgDtsp~~L~EySEe~-P~~Lsn~GMas~l~nYYRK~N 493 (968)
T COG5179 446 QEIIKTAGELTVGDTSPFSLFEYSEEE-PFFLSNPGMASLLNNYYRKSN 493 (968)
T ss_pred hhhhccccceeccCCCceeeeeecccC-ceeecCchHHHHHHHHHHhcc
Confidence 689999999999999999999999865 665677888888887776444
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=27.58 E-value=4.4e+02 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=13.7
Q ss_pred cccceeeecCCCCcccccccccc
Q 031002 4 GKTQMRRIENATSRQVTFSKRRN 26 (167)
Q Consensus 4 ~Ki~ik~I~n~~~R~~tf~kR~~ 26 (167)
+++...+..|.+.+-.+|-+|=.
T Consensus 521 gn~~~~~lSN~TRns~~~~~~i~ 543 (673)
T KOG4378|consen 521 GNRRLRLLSNATRNSTPHHANIT 543 (673)
T ss_pred ccccccccccccccCCcccccCC
Confidence 34555566666666666666543
No 137
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=27.26 E-value=63 Score=24.18 Aligned_cols=55 Identities=9% Similarity=0.112 Sum_probs=33.8
Q ss_pred ccccccchhhhhhhhhccCCcceeeeeecCCC----cccc-ccCchhHHHHHHHhhcccc
Q 031002 21 FSKRRNGLLKKAFELSVLCDAEVAVIIFSPRG----KLSE-FASSSMQETIERYLKHTKD 75 (167)
Q Consensus 21 f~kR~~gl~KKa~ELs~LC~~~v~livfsp~g----k~~~-f~sp~v~~Vl~RY~~~~~~ 75 (167)
+.-|..-++++..++...|..=...|.-.|.. +-|- |-=|++.+++++|......
T Consensus 92 ~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~ 151 (199)
T PF10112_consen 92 KRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQ 151 (199)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34455556677777777777666666666653 1122 2227888888888876553
No 138
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.23 E-value=2e+02 Score=19.64 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 120 TLEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 120 s~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
+..++......|+..+..+..++.+|
T Consensus 74 ~~~~~~~~~~~l~~~~~~l~~~~~~l 99 (118)
T cd04776 74 NRKQLEKMLEKIEKRRAELEQQRRDI 99 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666655443
No 139
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.17 E-value=1.7e+02 Score=18.42 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.2
Q ss_pred HHHHHH
Q 031002 131 LEKSVS 136 (167)
Q Consensus 131 Le~~L~ 136 (167)
|+.++.
T Consensus 9 LE~ki~ 14 (72)
T PF06005_consen 9 LEEKIQ 14 (72)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 140
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.17 E-value=4.2e+02 Score=23.09 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSK 108 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~ 108 (167)
+..++.++..+..+++.+..++
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN 89 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAEN 89 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555444
No 141
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.13 E-value=1.7e+02 Score=19.05 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIK 161 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~ 161 (167)
+++++|...+...-+. ...+++.+++..+.++...|.
T Consensus 57 G~~l~eI~~~l~~~~~-------~~~~~l~~~~~~l~~~i~~l~ 93 (96)
T cd04788 57 GFSLREIGRALDGPDF-------DPLELLRRQLARLEEQLELAT 93 (96)
T ss_pred CCCHHHHHHHHhCCCh-------hHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665543322 223455666666666655544
No 142
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=27.06 E-value=52 Score=26.76 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=32.4
Q ss_pred hhhhhhhhhccCC-cceeeeee-cCCC-ccccccCc--hhHHHHHHHhh
Q 031002 28 LLKKAFELSVLCD-AEVAVIIF-SPRG-KLSEFASS--SMQETIERYLK 71 (167)
Q Consensus 28 l~KKa~ELs~LC~-~~v~livf-sp~g-k~~~f~sp--~v~~Vl~RY~~ 71 (167)
-+.+..+|.||.. .++++-++ |+++ ..|.+++| ....+.+.|.+
T Consensus 200 ~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~R 248 (300)
T TIGR01001 200 DIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYVR 248 (300)
T ss_pred HHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHHH
Confidence 3466689999944 46777666 5665 47889998 68888888985
No 143
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=27.05 E-value=3.2e+02 Score=21.58 Aligned_cols=48 Identities=6% Similarity=0.124 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVS 136 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~ 136 (167)
++...++|..++.+...+....+.+-+.++. ...+|.+-...|+..+.
T Consensus 53 leqVnnQIqqlQnQaq~yqNmlqNta~l~~~--iw~Ql~~~l~kl~~l~d 100 (252)
T COG5314 53 LEQVNNQIQQLQNQAQQYQNMLQNTAALPFY--IWGQLSQVLNKLQNLQD 100 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChH--HHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766666665554 45555555554444433
No 144
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=26.92 E-value=1.5e+02 Score=21.06 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLE 122 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~ 122 (167)
+..|+.++.+.++.+..+..+.+++.|.+.++.-.-
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~ 40 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPG 40 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCcc
Confidence 456888999999999999999999999887665443
No 145
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.92 E-value=66 Score=25.34 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=29.8
Q ss_pred hhHHHH----HHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031002 61 SMQETI----ERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKL 111 (167)
Q Consensus 61 ~v~~Vl----~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~r~~ 111 (167)
++-.|| |||+.....-........+.+..++.++.+|+.++-.|-+..|.+
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777 888885442211000012345567777777777777766666654
No 146
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=26.59 E-value=2.5e+02 Score=20.96 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 122 EELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKV 157 (167)
Q Consensus 122 ~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~ 157 (167)
-++..|...|.+.+.+=.--...++.+||..|+.+.
T Consensus 136 ~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 136 RKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366667777777776666666778889999988774
No 147
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=26.48 E-value=1.9e+02 Score=18.83 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIK 161 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~ 161 (167)
|+++++...+...-+. ....++.++...+.++.+.|.
T Consensus 57 G~~l~~I~~~l~~~~~-------~~~~~l~~~~~~l~~~i~~l~ 93 (96)
T cd04768 57 GFSLAEIKELLDTEME-------ELTAMLLEKKQAIQQKIDRLQ 93 (96)
T ss_pred CCCHHHHHHHHhcCcH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555443211 233445555555555554443
No 148
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=26.41 E-value=60 Score=20.28 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=18.3
Q ss_pred CCcceeeeeecCCCccccccCc-hhHHHHHHH
Q 031002 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERY 69 (167)
Q Consensus 39 C~~~v~livfsp~gk~~~f~sp-~v~~Vl~RY 69 (167)
|+--.+++| +|..|...+| .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 554445555 3677777777 788888754
No 149
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=26.39 E-value=2.1e+02 Score=19.43 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
++.+..++..|-...+.+- .+-.+++.+++.+|...++..|+.++.|....
T Consensus 10 ~~~l~~el~~L~d~lEevL--------~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 10 IDQLLAELQELLDTLEEVL--------KSSGSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HhcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556666666655554432 22356788999999999999999999997665
No 150
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=26.22 E-value=40 Score=21.04 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.7
Q ss_pred CCcceeeeeecCCCcccc
Q 031002 39 CDAEVAVIIFSPRGKLSE 56 (167)
Q Consensus 39 C~~~v~livfsp~gk~~~ 56 (167)
=|+++|.|.|.|....|+
T Consensus 24 ~G~~~c~V~y~~~t~~F~ 41 (67)
T PF08796_consen 24 EGVEVCTVTYDQETETFE 41 (67)
T ss_dssp TTEEEEEEEEETTTTEEE
T ss_pred CCEEEEEEEEECCCCeEE
Confidence 479999999999776664
No 151
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=26.19 E-value=1.2e+02 Score=18.57 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031002 115 GLASCTLEELQQIERQLEKSVSNIRARK 142 (167)
Q Consensus 115 ~l~~ls~~eL~~Le~~Le~~L~~Ir~rk 142 (167)
++-++|.+||......+...|-..|-++
T Consensus 5 elr~ls~~eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 5 ELRELSVEELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777666443
No 152
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.12 E-value=5.5e+02 Score=24.04 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 88 QHLKHEAANMVKKIELLEVSKRKLL------GEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIK 161 (167)
Q Consensus 88 e~l~~e~~kl~k~~~~l~~~~r~~~------g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~ 161 (167)
+-|+.|...|+.++..+...+|.-. |..--++-+--|+.|-..|+..|..-..- -+++......|-+-...+.
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~-~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKS-QELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHh-HHHHHHhHHHHHHHHHHHH
Confidence 3456666666666666665554321 11111344556777766666666554433 2344444455555555555
Q ss_pred Hhh
Q 031002 162 ICF 164 (167)
Q Consensus 162 ~~~ 164 (167)
+||
T Consensus 469 ~En 471 (861)
T PF15254_consen 469 EEN 471 (861)
T ss_pred HHH
Confidence 555
No 153
>PRK14624 hypothetical protein; Provisional
Probab=26.11 E-value=2.3e+02 Score=19.61 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------------cCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKL---------------LGE--------GLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~---------------~g~--------~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
...+-.+..+++++++.++..+... .|. +.+-+..+|..-|++.|-.+.+..-.+..
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aAvNdA~~k~~ 87 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFDADDNKMLEDLVMAATNDALKKAK 87 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777666542 121 22235667788888888888888888888
Q ss_pred HHHHHHHHHH
Q 031002 144 QVFNEQIAQL 153 (167)
Q Consensus 144 ~ll~~~~~~l 153 (167)
+...+++..+
T Consensus 88 e~~~e~m~~~ 97 (115)
T PRK14624 88 EATAYEFQNA 97 (115)
T ss_pred HHHHHHHHHH
Confidence 8777776654
No 154
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=25.89 E-value=45 Score=27.25 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=19.7
Q ss_pred hccCCcceeeeeecCCC--cccc-ccC
Q 031002 36 SVLCDAEVAVIIFSPRG--KLSE-FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~g--k~~~-f~s 59 (167)
+++.|..+|++.|+..| |.|+ |+.
T Consensus 69 ~~~~G~n~ti~aYGqTGSGKTyTm~G~ 95 (337)
T cd01373 69 DCLSGYNGSIFAYGQTGSGKTYTMMGP 95 (337)
T ss_pred HHhCCCceeEEEeCCCCCCceEEecCC
Confidence 56899999999999864 7887 664
No 155
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=25.77 E-value=40 Score=27.52 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=19.8
Q ss_pred hccCCcceeeeeecCCC--cccc-ccC
Q 031002 36 SVLCDAEVAVIIFSPRG--KLSE-FAS 59 (167)
Q Consensus 36 s~LC~~~v~livfsp~g--k~~~-f~s 59 (167)
+++.|..+|+++|++.| |.|+ |+.
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~ 101 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGG 101 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCC
Confidence 57899999999999964 7777 664
No 156
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.33 E-value=2.2e+02 Score=24.63 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKR 109 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r 109 (167)
++...+.+..|+++++..+.+++
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~r 276 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQR 276 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445556666666666665543
No 157
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.27 E-value=2.9e+02 Score=21.92 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031002 89 HLKHEAANMVKKIELLEVSK 108 (167)
Q Consensus 89 ~l~~e~~kl~k~~~~l~~~~ 108 (167)
.+...+..|+.++...+..+
T Consensus 191 ~l~~~i~~lE~~VaeQ~~qL 210 (259)
T PF08657_consen 191 QLSNSIAYLEAEVAEQEAQL 210 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444
No 158
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=25.19 E-value=36 Score=25.86 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=21.2
Q ss_pred cCCcceeeeeecCCCccccccCchhHHHHHHHhhccc
Q 031002 38 LCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (167)
Q Consensus 38 LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~ 74 (167)
--||.+|++|||..++ + |.+.+++=|.....
T Consensus 90 yrgaqa~vLVFSTTDr-~-----SFea~~~w~~kv~~ 120 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDR-Y-----SFEATLEWYNKVQK 120 (246)
T ss_pred hccccceEEEEecccH-H-----HHHHHHHHHHHHHH
Confidence 3589999999999773 3 45566666655433
No 159
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.08 E-value=3.2e+02 Score=20.93 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 031002 84 EQNMQHLKHEAANMVKKIELLEV 106 (167)
Q Consensus 84 ~~~~e~l~~e~~kl~k~~~~l~~ 106 (167)
.+..+++|.+.+.++++.+++++
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777776666654
No 160
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.90 E-value=3.7e+02 Score=21.58 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
.++-++|..+...|+..|..+.++-..|
T Consensus 88 ~lgkeelqkl~~eLe~vLs~~q~KnekL 115 (268)
T PF11802_consen 88 TLGKEELQKLISELEMVLSTVQSKNEKL 115 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999988888876553
No 161
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.86 E-value=1.9e+02 Score=18.40 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
+..++.++..|+.+...+....+.+. .+++...-..|+..|+..+..+..+-.|+.
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d----~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMD----PSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----cccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655555544332222 256788888999999999998888765543
No 162
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.81 E-value=2.4e+02 Score=19.37 Aligned_cols=14 Identities=21% Similarity=0.397 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 031002 124 LQQIERQLEKSVSN 137 (167)
Q Consensus 124 L~~Le~~Le~~L~~ 137 (167)
+.+|+.+|...+..
T Consensus 10 l~~le~~l~~l~~e 23 (110)
T PRK13169 10 LDDLEQNLGVLLKE 23 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444333333
No 163
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=24.64 E-value=1.9e+02 Score=18.14 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 031002 88 QHLKHEAANMVKKIELLEVSKRKLLGEG 115 (167)
Q Consensus 88 e~l~~e~~kl~k~~~~l~~~~r~~~g~~ 115 (167)
..+..-..+|...+......++.+.|.+
T Consensus 22 ~~i~~~~~~L~~~i~~~~~eLr~~V~~n 49 (87)
T PF08700_consen 22 KEIRQLENKLRQEIEEKDEELRKLVYEN 49 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666777777777666654
No 164
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.11 E-value=1.5e+02 Score=16.94 Aligned_cols=14 Identities=43% Similarity=0.480 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 031002 148 EQIAQLKEKVSVIK 161 (167)
Q Consensus 148 ~~~~~l~~k~~~l~ 161 (167)
++|..|++|-..|-
T Consensus 26 ~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 26 EQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56677777766553
No 165
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.10 E-value=70 Score=21.76 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 031002 114 EGLASCTLEELQQIERQLE 132 (167)
Q Consensus 114 ~~l~~ls~~eL~~Le~~Le 132 (167)
..++.||.+|+..|...++
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 3457889999999988775
No 166
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=24.07 E-value=1e+02 Score=17.98 Aligned_cols=21 Identities=33% Similarity=0.232 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 031002 115 GLASCTLEELQQIERQLEKSV 135 (167)
Q Consensus 115 ~l~~ls~~eL~~Le~~Le~~L 135 (167)
.|..+|.+||+.....||.-+
T Consensus 4 fLk~ls~~eL~~rl~~LD~~M 24 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDPEM 24 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCHHH
Confidence 356789999888777766543
No 167
>PRK09039 hypothetical protein; Validated
Probab=23.82 E-value=4.2e+02 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEV 106 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~ 106 (167)
+..++.++..|+.++..++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544443
No 168
>COG1438 ArgR Arginine repressor [Transcription]
Probab=23.73 E-value=88 Score=22.75 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=11.7
Q ss_pred hhhccCCcceeeeeecC
Q 031002 34 ELSVLCDAEVAVIIFSP 50 (167)
Q Consensus 34 ELs~LC~~~v~livfsp 50 (167)
=|+|+||.|.++|++-.
T Consensus 119 IlGTIaGdDTilVi~r~ 135 (150)
T COG1438 119 ILGTIAGDDTILVICRS 135 (150)
T ss_pred hheeeeCCCeEEEEecC
Confidence 35777888877777633
No 169
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=23.54 E-value=41 Score=30.28 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred hccCCcceeeeeecCCCccccc
Q 031002 36 SVLCDAEVAVIIFSPRGKLSEF 57 (167)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~f 57 (167)
|+|.|+-++||.|.++|..+.+
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999987763
No 170
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=23.47 E-value=3.3e+02 Score=22.41 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 121 LEELQQIERQLEKSVSNI--RARKNQVFNEQIAQLKEKVSVIKI 162 (167)
Q Consensus 121 ~~eL~~Le~~Le~~L~~I--r~rk~~ll~~~~~~l~~k~~~l~~ 162 (167)
++-|.+-...|+.++-.- .+---.-+..|+..|.+.-+.|..
T Consensus 37 VEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR 80 (351)
T PF07058_consen 37 VEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER 80 (351)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554221 111122334444555544444443
No 171
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=23.42 E-value=2.6e+02 Score=25.16 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIE 128 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le 128 (167)
.+.+......+..++..++.+.+.+-|++++--|.+||..+.
T Consensus 213 ~~~L~~l~~el~~~l~~le~eiy~laG~~FNi~SPKQL~~IL 254 (593)
T COG0749 213 VQYLKELSKELGCELAELEEEIYELAGEEFNINSPKQLGEIL 254 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHH
Confidence 445555556666677777777777778777777777777653
No 172
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=23.39 E-value=1e+02 Score=20.33 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=26.6
Q ss_pred cCCcceeeeeecCCC-ccccccCc-hhHHHHHHHhhcc
Q 031002 38 LCDAEVAVIIFSPRG-KLSEFASS-SMQETIERYLKHT 73 (167)
Q Consensus 38 LC~~~v~livfsp~g-k~~~f~sp-~v~~Vl~RY~~~~ 73 (167)
+|..+--+.|+.|+| -.|....| .+.+|++.+...+
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~~ 81 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALEG 81 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhcC
Confidence 577777888887887 44555556 8999999977743
No 173
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=23.38 E-value=1.1e+02 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=25.3
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031002 111 LLGEGLASCTLEELQQIERQLEKSVSNIR 139 (167)
Q Consensus 111 ~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir 139 (167)
.|-+.=-+||+++++.+|......|..+|
T Consensus 229 cW~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 229 CWLDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred hhHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 35577789999999999999999999876
No 174
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=23.38 E-value=65 Score=20.43 Aligned_cols=19 Identities=11% Similarity=0.424 Sum_probs=13.6
Q ss_pred hhhhhhhccCCcceeeeee
Q 031002 30 KKAFELSVLCDAEVAVIIF 48 (167)
Q Consensus 30 KKa~ELs~LC~~~v~livf 48 (167)
.--+-+|++||---++|+.
T Consensus 21 q~e~sfsiicgrlrgiv~t 39 (91)
T PF06523_consen 21 QGEHSFSIICGRLRGIVLT 39 (91)
T ss_pred ccCeeEEEEeeceeeEEEE
Confidence 3356789999987777553
No 175
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=23.37 E-value=27 Score=29.06 Aligned_cols=39 Identities=38% Similarity=0.481 Sum_probs=0.0
Q ss_pred ccchhhhhhhhhccCCcceee-eeecCCCccccccCchhH
Q 031002 25 RNGLLKKAFELSVLCDAEVAV-IIFSPRGKLSEFASSSMQ 63 (167)
Q Consensus 25 ~~gl~KKa~ELs~LC~~~v~l-ivfsp~gk~~~f~sp~v~ 63 (167)
..|++|=+.=..-+|+|.-++ -+.+..|++.+|+||++.
T Consensus 53 qd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 53 QDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ----------------------------------------
T ss_pred hhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 445565557778899999999 778888999999999765
No 176
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=23.31 E-value=56 Score=25.76 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=22.7
Q ss_pred hhhhccCCcceeeeeecCCCccccccCc
Q 031002 33 FELSVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 33 ~ELs~LC~~~v~livfsp~gk~~~f~sp 60 (167)
.+|.-.||++|+|||....|+++-.+..
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t 161 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQR 161 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCc
Confidence 3566678999999999999988876653
No 177
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.24 E-value=3.1e+02 Score=20.20 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 031002 116 LASCTLEELQQIERQLEKS 134 (167)
Q Consensus 116 l~~ls~~eL~~Le~~Le~~ 134 (167)
...+++++...+.+.+...
T Consensus 77 ~~~ltl~~vI~fLq~l~~~ 95 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTT 95 (161)
T ss_pred cccCCHHHHHHHHHHHHhc
Confidence 4778999988888888764
No 178
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=23.11 E-value=1.5e+02 Score=26.32 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 031002 135 VSNIRARKNQVFNEQIAQLKEKVSVIKICFSVW 167 (167)
Q Consensus 135 L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~~~~~ 167 (167)
-+.|.......|.+||+.+=+.+..|+++|+.|
T Consensus 357 r~~v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~ 389 (557)
T PF01763_consen 357 RDSVSNSINKCLEGQINNQFDTIEDLKEENQDL 389 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788899999999999999999876
No 179
>PRK13677 hypothetical protein; Provisional
Probab=23.03 E-value=1.3e+02 Score=21.06 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 121 LEELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 121 ~~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
++||..||..+..++..|++..+.
T Consensus 101 L~dLrHLE~Vv~~KIaEIe~dLek 124 (125)
T PRK13677 101 LDDLRHLESVVANKISEIEADLEK 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999887654
No 180
>PF14282 FlxA: FlxA-like protein
Probab=22.84 E-value=2.5e+02 Score=18.88 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 91 KHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKI 162 (167)
Q Consensus 91 ~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~ 162 (167)
...+..|.+++..|.. +|..|...= ..=...+..+.++|..+|..|+.....++.
T Consensus 18 ~~~I~~L~~Qi~~Lq~----------------ql~~l~~~~-~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQE----------------QLQELSQDS-DLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887753 444444420 011234466777888888888888776654
No 181
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=22.76 E-value=1.5e+02 Score=17.51 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 031002 116 LASCTLEELQQIERQLEKSVSNIRAR 141 (167)
Q Consensus 116 l~~ls~~eL~~Le~~Le~~L~~Ir~r 141 (167)
+.++|.+||......+...|-..+-+
T Consensus 3 ir~ls~~eL~~~l~~l~~elf~Lr~q 28 (57)
T cd00427 3 LREKSDEELQEKLDELKKELFNLRFQ 28 (57)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777776666666666666533
No 182
>PF13991 BssS: BssS protein family
Probab=22.75 E-value=1.5e+02 Score=18.87 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 031002 117 ASCTLEELQQIERQLEKSVSNIRA 140 (167)
Q Consensus 117 ~~ls~~eL~~Le~~Le~~L~~Ir~ 140 (167)
-.|+.+.+++|...|+..+..|+.
T Consensus 40 ~~lT~e~Ar~Li~~L~~~I~kiE~ 63 (73)
T PF13991_consen 40 YWLTTEMARQLISILEAGIDKIES 63 (73)
T ss_pred eEecHHHHHHHHHHHHHHHHHHHh
Confidence 347888888888888888877764
No 183
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=22.66 E-value=3.2e+02 Score=20.16 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 120 TLEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 120 s~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
+-.++.++...++..|+.|++....+
T Consensus 136 ~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 136 TEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66789999999999999999876554
No 184
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.66 E-value=1.6e+02 Score=18.00 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSK 108 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~ 108 (167)
+..++.++..++.+++.++...
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554443
No 185
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.64 E-value=1.6e+02 Score=19.03 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=29.8
Q ss_pred hhhhccCCcceeeeeecCCCcccc-ccCchhHHHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 33 FELSVLCDAEVAVIIFSPRGKLSE-FASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRK 110 (167)
Q Consensus 33 ~ELs~LC~~~v~livfsp~gk~~~-f~sp~v~~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~r~ 110 (167)
.||..+-+- ..||-.-|++|. .+.+.+...|+.-.... +..+..+......+.+++..++..++.
T Consensus 36 ~eL~~l~~~---~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~----------~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 36 EELEKLDDD---RKVYKSVGKMFVKQDKEEAIEELEERIEKL----------EKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHTSSTT----EEEEEETTEEEEEEHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCc---chhHHHHhHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665444 333433355554 32235554444433311 123444555555555555555554443
No 186
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.61 E-value=2.2e+02 Score=18.18 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~~~ 107 (167)
+.++.+-....+|+++++.++.-
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666778888889999888754
No 187
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.60 E-value=3.4e+02 Score=23.67 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLE 105 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~ 105 (167)
++.-+.....|+++++.++
T Consensus 71 LteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666654
No 188
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.52 E-value=3.2e+02 Score=20.96 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031002 128 ERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKICF 164 (167)
Q Consensus 128 e~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~~ 164 (167)
...+-...+..+..-..+-.++|+.||.....+.+.+
T Consensus 106 v~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a 142 (218)
T KOG1655|consen 106 VAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQA 142 (218)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444566778888887776666543
No 189
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=2.9e+02 Score=19.50 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 031002 86 NMQHLKHEAANMVKKIELLEVSKRKLLGEGLA 117 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~ 117 (167)
.++.+..+......+++.++..++.-.|++++
T Consensus 96 ~i~~les~~e~I~~~m~~LK~~LYaKFgdnIN 127 (131)
T KOG1760|consen 96 EIEELESELESISARMDELKKVLYAKFGDNIN 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 35566667777777888888888888887765
No 190
>PLN03194 putative disease resistance protein; Provisional
Probab=22.42 E-value=58 Score=24.60 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=21.9
Q ss_pred CCcceeeeeecCCCccccccCchhHHHHHH
Q 031002 39 CDAEVAVIIFSPRGKLSEFASSSMQETIER 68 (167)
Q Consensus 39 C~~~v~livfsp~gk~~~f~sp~v~~Vl~R 68 (167)
=.+.++|+||||+=-...|+-..+..|++.
T Consensus 79 eeSri~IvVfS~~Ya~S~WCLdEL~~I~e~ 108 (187)
T PLN03194 79 RNCKVGVAVFSPRYCESYFCLHELALIMES 108 (187)
T ss_pred HhCeEEEEEECCCcccchhHHHHHHHHHHc
Confidence 457899999999754555766677777664
No 191
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.25 E-value=3.2e+02 Score=19.92 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
+..+.-.+..++..+..++..++....-+ ++|.+-|..+|.-.-......|.+|-.+|.
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lg-e~L~~iDFeqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELG-EGLHLIDFEQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566655555544432211 456677777776666666667766655544
No 192
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=22.25 E-value=72 Score=19.00 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARK 142 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk 142 (167)
++|.+||......+...|...|-++
T Consensus 6 ~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 6 ELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555443
No 193
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=22.10 E-value=72 Score=18.98 Aligned_cols=25 Identities=12% Similarity=0.401 Sum_probs=17.0
Q ss_pred eeeecCCCccccccCc-hhHHHHHHH
Q 031002 45 VIIFSPRGKLSEFASS-SMQETIERY 69 (167)
Q Consensus 45 livfsp~gk~~~f~sp-~v~~Vl~RY 69 (167)
+.||-|+|+..+|+.. .+.++...-
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I 26 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSI 26 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHH
Confidence 3567799998888775 566655443
No 194
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=21.77 E-value=63 Score=18.73 Aligned_cols=29 Identities=10% Similarity=0.285 Sum_probs=21.2
Q ss_pred ccCCcceeeeeecCCCccccccCchhHHHHH
Q 031002 37 VLCDAEVAVIIFSPRGKLSEFASSSMQETIE 67 (167)
Q Consensus 37 ~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~ 67 (167)
++=.++.+++|+. +| .+.|.+|.+..++.
T Consensus 6 l~~~~~~~i~i~d-~~-~i~~~N~~~~~l~g 34 (64)
T PF13188_consen 6 LFDNSPDGILIID-GG-RIIYVNPAFEELFG 34 (64)
T ss_dssp HHCCSSSEEEEEE-TS-BEEEE-HHHHHHHC
T ss_pred HHHcCccceEEEE-CC-ChHHhhHHHHHHhC
Confidence 4456788999999 66 77788887777764
No 195
>PHA01750 hypothetical protein
Probab=21.63 E-value=2.2e+02 Score=17.75 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 031002 90 LKHEAANMVKKIELL 104 (167)
Q Consensus 90 l~~e~~kl~k~~~~l 104 (167)
.+.|+..|+.+++.+
T Consensus 40 V~~ELdNL~~ei~~~ 54 (75)
T PHA01750 40 VNSELDNLKTEIEEL 54 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 196
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.62 E-value=3.7e+02 Score=20.43 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 031002 92 HEAANMVKKIELLEVS 107 (167)
Q Consensus 92 ~e~~kl~k~~~~l~~~ 107 (167)
.++..|+.-+..++..
T Consensus 55 ~EIR~LKe~NqkLqed 70 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQED 70 (195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 197
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.47 E-value=2.7e+02 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 031002 127 IERQLEKSVSNIRARK 142 (167)
Q Consensus 127 Le~~Le~~L~~Ir~rk 142 (167)
+...|+..+..+.++.
T Consensus 80 ~~~~l~~~~~~l~~~i 95 (116)
T cd04769 80 LQQALEDKKQEIRAQI 95 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 198
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=21.46 E-value=3.3e+02 Score=19.75 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 91 KHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 91 ~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
+.-+..+...+...+.++..+.+ ++--.++++..|.+.++..-..|...-+-+
T Consensus 60 ~~~v~~~~~~i~~k~~El~~L~~--~d~~kv~~~E~L~d~v~eLkeel~~el~~l 112 (146)
T PF05852_consen 60 KNKVSSLETEISEKKKELSHLKK--FDRKKVEDLEKLTDRVEELKEELEFELERL 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444 555567777777777777766666554433
No 199
>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuc
Probab=21.36 E-value=3.2e+02 Score=22.75 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 031002 88 QHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQI 127 (167)
Q Consensus 88 e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~L 127 (167)
++++.-...+.++++.++...+.+.|..++--|..++..+
T Consensus 3 ~~l~~~~~~~~~~~~~l~~~~~~l~g~~fn~~S~~qv~~~ 42 (377)
T cd08637 3 EYLEELSEELEKELAELEEEIYELAGEEFNINSPKQLGEV 42 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4455556666677777777777777777776677766554
No 200
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.35 E-value=2.5e+02 Score=18.32 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 121 LEELQQIERQLEKSVSNIRARKNQVFNE 148 (167)
Q Consensus 121 ~~eL~~Le~~Le~~L~~Ir~rk~~ll~~ 148 (167)
+++|....+.|+.+-..|..+..+||..
T Consensus 35 LD~Lns~LD~LE~rnD~l~~~L~~LLes 62 (83)
T PF03670_consen 35 LDQLNSCLDHLEQRNDHLHAQLQELLES 62 (83)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666777777777777777777777754
No 201
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=21.27 E-value=1.1e+02 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~ 107 (167)
.+.++.-+...+.++.+++..
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~ 127 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELH 127 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666777766654
No 202
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.26 E-value=2.8e+02 Score=18.94 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=6.2
Q ss_pred hhhhhccCCcce
Q 031002 32 AFELSVLCDAEV 43 (167)
Q Consensus 32 a~ELs~LC~~~v 43 (167)
..|+|-+||+-+
T Consensus 3 I~e~a~~~gvs~ 14 (126)
T cd04783 3 IGELAKAAGVNV 14 (126)
T ss_pred HHHHHHHHCcCH
Confidence 345555555443
No 203
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=21.09 E-value=54 Score=21.28 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=19.4
Q ss_pred hhhhhhhhhccC----CcceeeeeecCCCcc
Q 031002 28 LLKKAFELSVLC----DAEVAVIIFSPRGKL 54 (167)
Q Consensus 28 l~KKa~ELs~LC----~~~v~livfsp~gk~ 54 (167)
+|+.|.+++... ...|+.+|++|+|+.
T Consensus 7 ~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~ 37 (102)
T PF00383_consen 7 FMRIAIELAKRSRPCGNFPVGAVIVDPDGKI 37 (102)
T ss_dssp HHHHHHHHHHTHBTTTSSSEEEEEEETTTEE
T ss_pred HHHHHHHHHHhccccCCCCEEEEEEeccCcc
Confidence 456666665555 889999999987654
No 204
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=21.02 E-value=37 Score=23.71 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=11.7
Q ss_pred eeeecCCCccccccCc
Q 031002 45 VIIFSPRGKLSEFASS 60 (167)
Q Consensus 45 livfsp~gk~~~f~sp 60 (167)
+|+|+|.|..-.|+.|
T Consensus 79 ail~aP~gs~V~YGQP 94 (121)
T PF04019_consen 79 AILYAPEGSVVLYGQP 94 (121)
T ss_pred HHHhCCCCCEEEECCC
Confidence 3667778877778887
No 205
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=21.01 E-value=6.7e+02 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 126 QIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIK 161 (167)
Q Consensus 126 ~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~ 161 (167)
+.+.-|+..|.++..--..-+.++...|+++.+.|.
T Consensus 422 qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~ 457 (742)
T PRK05561 422 QAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELE 457 (742)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777766666666777777777665543
No 206
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=20.93 E-value=2.1e+02 Score=23.18 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~l 119 (167)
+..|+.++.+|.+++..++...-.+||.+-++-
T Consensus 154 I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk 186 (308)
T PF06717_consen 154 IPGLNKQISALDKQIVAINKKIDRYWGKDANGK 186 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 445677777777777777777777999887763
No 207
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=20.85 E-value=96 Score=24.49 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=26.9
Q ss_pred hhhhhhhh------hccCCcceeeeeecCCCccccccCc--hhHHHHHHHhh
Q 031002 28 LLKKAFEL------SVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLK 71 (167)
Q Consensus 28 l~KKa~EL------s~LC~~~v~livfsp~gk~~~f~sp--~v~~Vl~RY~~ 71 (167)
+.+||.|| +-|.|+++|+| ||+=.-++.|+| .+.+-+.||-.
T Consensus 54 vk~~A~ellG~i~~aPlaGtEIAvV--sptLarHHlPHsaCDiaEYLRr~GA 103 (310)
T COG4052 54 VKEKAGELLGKIIEAPLAGTEIAVV--SPTLARHHLPHSACDIAEYLRRPGA 103 (310)
T ss_pred HHHHHHHhhhhheecccCCceEEEe--ccchhhccCCCchhhHHHHHhccCC
Confidence 34677777 67899999975 666555556666 44444444443
No 208
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.81 E-value=3.1e+02 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031002 86 NMQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~ 107 (167)
.++.++..+.+++++.+.++..
T Consensus 931 e~~kl~kkl~klqk~~~~l~~r 952 (995)
T KOG0432|consen 931 EIQKLAKKLEKLQKQLDKLQAR 952 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666543
No 209
>PRK11519 tyrosine kinase; Provisional
Probab=20.69 E-value=6.5e+02 Score=22.95 Aligned_cols=49 Identities=8% Similarity=0.293 Sum_probs=31.4
Q ss_pred hHHHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031002 62 MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLL 112 (167)
Q Consensus 62 v~~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~r~~~ 112 (167)
+..+.+.|....-.... .......+++++++..++.+++..+..+..+.
T Consensus 246 aN~l~~~Yi~~~~~~k~--~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 246 LNSITRNYLEQNIERKS--EEASKSLAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677765443221 11134467889999999999988888776554
No 210
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=20.67 E-value=28 Score=23.19 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=10.0
Q ss_pred cCCcceeeeeecCCCcc-cc-ccCc
Q 031002 38 LCDAEVAVIIFSPRGKL-SE-FASS 60 (167)
Q Consensus 38 LC~~~v~livfsp~gk~-~~-f~sp 60 (167)
|||+ +-.|+|++++ |+ |..|
T Consensus 29 L~gv---la~F~~~~rl~Ys~~~~P 50 (92)
T PF12112_consen 29 LCGV---LASFRPDHRLSYSPYVRP 50 (92)
T ss_dssp HHHT---T-EE-SSSSEE--TTEEE
T ss_pred HHHH---HHccCCCCceEecCcccc
Confidence 5665 3347888765 33 5556
No 211
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=20.60 E-value=62 Score=27.41 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=39.1
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCc
Q 031002 8 MRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 8 ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp 60 (167)
|+.+.+...-..+|.+|..| |++.+|+..+-+.+|.-..-...|+.+
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~ 64 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNE 64 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCc
Confidence 67778888888999999999 999999998888887766666667775
No 212
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=57 Score=25.25 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=15.0
Q ss_pred CCcceeeeeecCCCcccc
Q 031002 39 CDAEVAVIIFSPRGKLSE 56 (167)
Q Consensus 39 C~~~v~livfsp~gk~~~ 56 (167)
.|-|-.+.||||.|++|.
T Consensus 7 agfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CCccceEEEECCCceEEe
Confidence 466778899999999985
No 213
>PF09638 Ph1570: Ph1570 protein; InterPro: IPR018596 This entry includes a hypothetical protein from Pyrococcus horikoshii, which has no known function. It contains six alpha helices and eight beta strands and is thought to be monomeric. ; PDB: 2HQ4_B.
Probab=20.34 E-value=60 Score=23.09 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=21.1
Q ss_pred eeecCCCccccccCchhHHHHHHHhh
Q 031002 46 IIFSPRGKLSEFASSSMQETIERYLK 71 (167)
Q Consensus 46 ivfsp~gk~~~f~sp~v~~Vl~RY~~ 71 (167)
.+..|.|.+|.|.-|++.+.|-+|..
T Consensus 125 fild~~g~LfvFnKPs~~e~ilKYig 150 (152)
T PF09638_consen 125 FILDERGRLFVFNKPSARELILKYIG 150 (152)
T ss_dssp EEE-TTSEEEEESSTTHHHHHHTTTT
T ss_pred eEECCCceEEEEcCccHHHHHHHHHh
Confidence 34567889999999999999988864
No 214
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=20.23 E-value=2.3e+02 Score=17.55 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 121 LEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 121 ~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
..|+..++..|......+.+|+.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888888887654
No 215
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=20.23 E-value=4e+02 Score=20.32 Aligned_cols=85 Identities=12% Similarity=0.244 Sum_probs=46.0
Q ss_pred hhHHHHHHHhhccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC------HHHHHHHHHHHHHH
Q 031002 61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT------LEELQQIERQLEKS 134 (167)
Q Consensus 61 ~v~~Vl~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls------~~eL~~Le~~Le~~ 134 (167)
.+..+++.|.+..-.+.+ -........++.++.+.++.-+.....-+..|++.+. ...+......|+..
T Consensus 23 ~v~~~~~~Y~~~vvTee~-----ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ 97 (215)
T PF07083_consen 23 EVDEAVEKYKGYVVTEEN-----IKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQ 97 (215)
T ss_pred HHHHHHHHhCCcccChhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999876544322 1223345667777777777776666555555444321 22344444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 031002 135 VSNIRARKNQVFNEQI 150 (167)
Q Consensus 135 L~~Ir~rk~~ll~~~~ 150 (167)
+..+..+..+.-.+.+
T Consensus 98 ik~~Ee~~k~~k~~~i 113 (215)
T PF07083_consen 98 IKEFEEKEKEEKREKI 113 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
No 216
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=20.17 E-value=41 Score=17.02 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=15.5
Q ss_pred hccCCcceeeeeecCCCccccccCc
Q 031002 36 SVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~f~sp 60 (167)
+|-||..-.+++.+ +|.+|.|++.
T Consensus 3 ~ia~G~~ht~al~~-~g~v~~wG~n 26 (30)
T PF13540_consen 3 QIACGGYHTCALTS-DGEVYCWGDN 26 (30)
T ss_dssp EEEEESSEEEEEE--TTEEEEEE--
T ss_pred EEEecCCEEEEEEc-CCCEEEEcCC
Confidence 35677777777765 5889999875
Done!