Query 031002
Match_columns 167
No_of_seqs 123 out of 1315
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 7.7E-40 2.6E-44 210.1 0.9 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.2E-39 4.1E-44 214.1 1.0 79 2-80 1-79 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 8.6E-38 3E-42 208.6 -0.4 73 1-73 16-88 (100)
4 1hbx_A SRF, serum response fac 100.0 1.1E-37 3.8E-42 205.5 -1.3 71 1-71 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 6.1E-37 2.1E-41 205.7 -1.0 69 1-69 9-77 (103)
6 2w6a_A ARF GTPase-activating p 85.4 3.9 0.00013 23.9 7.7 48 118-165 9-58 (63)
7 1j1d_C Troponin I, TNI; THIN f 81.6 10 0.00036 26.0 10.5 50 112-161 51-106 (133)
8 2l5g_B Putative uncharacterize 80.5 5.2 0.00018 21.7 4.9 38 118-163 1-38 (42)
9 1ytz_T Troponin T; muscle, THI 78.1 6.4 0.00022 26.0 5.7 49 112-160 35-89 (107)
10 1j1d_B Troponin T, TNT; THIN f 75.3 6.1 0.00021 26.0 5.0 46 115-160 38-89 (106)
11 1j1e_C Troponin I, TNI; THIN f 74.5 21 0.00073 25.7 10.3 49 113-161 52-106 (180)
12 1dip_A Delta-sleep-inducing pe 73.8 3.1 0.00011 25.5 3.0 23 144-166 18-40 (78)
13 2ky6_A Mediator of RNA polymer 70.2 3.4 0.00012 29.3 3.0 37 36-72 116-160 (166)
14 3s9g_A Protein hexim1; cyclin 70.1 19 0.00066 23.2 6.4 19 89-107 34-52 (104)
15 2oa5_A Hypothetical protein BQ 68.3 23 0.00078 23.4 7.2 59 85-143 8-68 (110)
16 3nmd_A CGMP dependent protein 67.4 18 0.00063 22.0 6.8 40 116-158 15-54 (72)
17 2oxj_A Hybrid alpha/beta pepti 57.7 5.8 0.0002 20.4 1.6 11 151-161 18-28 (34)
18 1ybx_A Conserved hypothetical 56.7 40 0.0014 23.3 6.4 67 87-153 43-132 (143)
19 1m2d_A [2Fe-2S] ferredoxin; th 55.9 7.6 0.00026 25.3 2.5 32 39-71 59-91 (110)
20 2dfs_A Myosin-5A; myosin-V, in 53.7 1.4E+02 0.0047 27.5 11.5 13 152-164 1020-1032(1080)
21 2dfs_A Myosin-5A; myosin-V, in 52.5 1E+02 0.0034 28.4 10.0 9 146-154 1035-1043(1080)
22 2l5g_A GPS2 protein, G protein 51.7 25 0.00085 18.4 3.7 18 128-145 17-34 (38)
23 3c3f_A Alpha/beta peptide with 51.3 8.5 0.00029 19.7 1.6 11 151-161 18-28 (34)
24 1kd8_B GABH BLL, GCN4 acid bas 50.8 8.6 0.0003 20.0 1.6 13 150-162 17-29 (36)
25 3nrf_A APAG protein; structura 49.9 3.2 0.00011 27.3 -0.2 41 11-56 21-61 (106)
26 3m48_A General control protein 49.0 7.8 0.00027 19.8 1.3 10 151-160 17-26 (33)
27 2bni_A General control protein 43.8 12 0.0004 19.3 1.4 10 151-160 18-27 (34)
28 3hvz_A Uncharacterized protein 41.1 15 0.00051 22.6 2.0 25 44-68 7-32 (78)
29 3c3g_A Alpha/beta peptide with 40.8 22 0.00077 18.0 2.2 11 151-161 17-27 (33)
30 2jee_A YIIU; FTSZ, septum, coi 40.8 64 0.0022 20.0 6.7 21 119-139 3-23 (81)
31 4a17_T RPL24, 60S ribosomal pr 40.7 11 0.00038 26.6 1.5 44 34-78 6-53 (158)
32 2yy0_A C-MYC-binding protein; 40.3 50 0.0017 18.6 4.3 25 84-108 18-42 (53)
33 1go4_E MAD1 (mitotic arrest de 39.9 13 0.00044 24.2 1.6 25 86-110 20-44 (100)
34 2oqq_A Transcription factor HY 39.9 44 0.0015 18.0 3.9 17 149-165 18-34 (42)
35 2hy6_A General control protein 38.3 16 0.00055 18.7 1.4 10 151-160 18-27 (34)
36 3gp4_A Transcriptional regulat 36.2 82 0.0028 21.3 5.4 11 32-42 5-15 (142)
37 1kd8_A GABH AIV, GCN4 acid bas 36.0 13 0.00043 19.4 0.8 14 150-163 17-30 (36)
38 3s9g_A Protein hexim1; cyclin 35.7 88 0.003 20.1 9.1 16 56-71 9-24 (104)
39 2k48_A Nucleoprotein; viral pr 35.2 92 0.0032 20.3 6.1 60 85-144 35-100 (107)
40 2zvv_Y Cyclin-dependent kinase 34.4 9.3 0.00032 18.1 0.2 12 15-26 15-26 (26)
41 3ghg_A Fibrinogen alpha chain; 34.1 2.1E+02 0.0073 24.1 8.6 11 61-71 50-60 (562)
42 2ygg_A Sodium/hydrogen exchang 34.0 65 0.0022 19.4 3.9 25 119-143 4-28 (70)
43 1a93_B MAX protein, coiled coi 33.3 53 0.0018 16.9 3.8 23 88-110 10-32 (34)
44 1uo4_A General control protein 33.3 22 0.00074 18.3 1.4 10 151-160 18-27 (34)
45 2wq1_A General control protein 32.9 36 0.0012 17.3 2.2 12 150-161 16-27 (33)
46 1j8b_A YBAB; hypothetical prot 31.9 76 0.0026 20.8 4.4 64 89-153 12-98 (112)
47 2rpa_A Katanin P60 ATPase-cont 31.9 65 0.0022 19.7 3.8 35 29-74 16-50 (78)
48 2dgc_A Protein (GCN4); basic d 31.9 73 0.0025 18.5 3.9 17 149-165 31-47 (63)
49 2l16_A SEC-independent protein 31.3 5 0.00017 24.9 -1.4 30 43-74 16-45 (78)
50 3fg8_A Uncharacterized protein 31.0 30 0.001 21.4 2.3 30 36-66 16-45 (118)
51 3iv1_A Tumor susceptibility ge 31.0 95 0.0032 19.1 9.1 62 90-165 16-77 (78)
52 3rmq_A Uncharacterized protein 30.4 12 0.0004 24.9 0.2 13 33-45 30-42 (116)
53 3sl9_C B-cell CLL/lymphoma 9 p 30.4 58 0.002 18.0 3.0 22 112-133 3-24 (55)
54 3nzj_F Proteasome component C1 29.5 13 0.00045 28.6 0.4 21 36-56 3-23 (288)
55 2xus_A Breast cancer metastasi 29.4 78 0.0027 17.6 5.7 22 140-161 24-45 (49)
56 4dnd_A Syntaxin-10, SYN10; str 29.4 1.3E+02 0.0044 20.2 9.0 83 61-144 42-127 (130)
57 1g6u_A Domain swapped dimer; d 29.0 70 0.0024 17.0 7.0 17 117-133 15-31 (48)
58 3twe_A Alpha4H; unknown functi 28.2 54 0.0018 15.3 3.9 13 92-104 8-20 (27)
59 3jrn_A AT1G72930 protein; TIR 27.9 33 0.0011 24.4 2.3 34 38-71 60-93 (176)
60 1dh3_A Transcription factor CR 27.5 88 0.003 17.6 3.9 15 150-164 24-38 (55)
61 3gpv_A Transcriptional regulat 27.4 1.4E+02 0.0048 20.2 5.4 13 31-43 18-30 (148)
62 1q08_A Zn(II)-responsive regul 26.9 1.1E+02 0.0039 18.7 7.6 12 118-129 16-27 (99)
63 1iru_G 20S proteasome; cell cy 26.7 17 0.00057 27.3 0.5 20 37-56 3-22 (254)
64 1ez3_A Syntaxin-1A; three heli 26.6 1.3E+02 0.0045 19.4 10.4 59 86-144 13-72 (127)
65 4gfh_A DNA topoisomerase 2; to 26.3 4E+02 0.014 24.8 12.1 50 111-160 1116-1169(1177)
66 1e52_A Excinuclease ABC subuni 26.0 82 0.0028 18.4 3.4 42 115-156 13-58 (63)
67 3tso_C RAB11 family-interactin 25.9 1.2E+02 0.004 18.5 4.9 25 117-141 12-36 (75)
68 2xrh_A Protein HP0721; unknown 25.8 1.4E+02 0.0047 19.3 4.9 48 112-159 7-59 (100)
69 2kmm_A Guanosine-3',5'-BIS(dip 25.4 46 0.0016 19.2 2.3 25 45-69 3-28 (73)
70 1deq_A Fibrinogen (alpha chain 24.8 2.7E+02 0.0093 22.4 11.7 40 27-70 22-62 (390)
71 1p9i_A Cortexillin I/GCN4 hybr 24.5 70 0.0024 15.4 3.4 25 122-146 2-26 (31)
72 3h4p_A Proteasome subunit alph 24.2 19 0.00065 27.2 0.4 17 40-56 11-27 (264)
73 2phn_A F420-0:gamma-glutamyl l 23.7 9.5 0.00033 29.1 -1.4 27 34-60 138-164 (254)
74 2k1v_A Insulin-like peptide IN 23.6 24 0.00082 16.9 0.5 9 32-40 14-22 (26)
75 1z56_A Ligase interacting fact 23.6 80 0.0027 23.7 3.7 53 11-72 119-176 (246)
76 3rrk_A V-type ATPase 116 kDa s 23.6 1.1E+02 0.0038 23.7 4.8 47 61-107 200-248 (357)
77 1dd4_C 50S ribosomal protein L 23.5 52 0.0018 17.5 2.0 22 114-135 8-29 (40)
78 2zxx_A Geminin; coiled-coil, c 23.2 1E+02 0.0036 18.9 3.6 21 145-165 38-58 (79)
79 1ukf_A Avirulence protein AVRP 23.2 23 0.00079 25.7 0.7 39 32-71 131-173 (188)
80 1ryp_E 20S proteasome; multica 23.1 19 0.00065 26.6 0.2 13 44-56 3-15 (242)
81 1ryp_D 20S proteasome; multica 22.4 22 0.00074 26.3 0.4 15 42-56 3-17 (241)
82 2vlg_A Sporulation kinase A; h 22.3 47 0.0016 21.0 2.0 26 40-66 7-32 (111)
83 3u52_A Phenol hydroxylase comp 22.0 34 0.0012 28.7 1.5 38 34-71 397-449 (511)
84 2dm0_A Tyrosine-protein kinase 21.9 75 0.0026 20.7 3.1 43 32-74 51-104 (125)
85 4fi5_A Nucleoprotein; structur 21.9 1.8E+02 0.006 19.1 5.3 61 86-146 23-89 (113)
86 2jo8_A Serine/threonine-protei 21.8 81 0.0028 17.7 2.6 21 115-135 6-26 (51)
87 1s94_A S-syntaxin; three helix 21.7 2.1E+02 0.007 19.8 11.5 61 86-146 44-105 (180)
88 1m1j_B Fibrinogen beta chain; 21.5 3.4E+02 0.012 22.4 9.0 40 27-71 55-96 (464)
89 3ge3_A Toluene-4-monooxygenase 21.5 44 0.0015 28.0 2.1 37 35-71 396-446 (500)
90 4dzn_A Coiled-coil peptide CC- 21.4 85 0.0029 15.3 3.2 19 87-105 4-22 (33)
91 2hq4_A Hypothetical protein PH 21.3 36 0.0012 23.4 1.2 26 46-71 134-159 (161)
92 1r8d_A Transcription activator 21.0 1.5E+02 0.0051 18.7 4.3 12 32-43 5-16 (109)
93 2zjr_V 50S ribosomal protein L 21.0 1.4E+02 0.0047 17.5 4.1 49 88-141 12-60 (67)
94 1gd2_E Transcription factor PA 20.9 1.4E+02 0.0049 17.7 4.7 21 146-166 48-68 (70)
95 1ryp_B 20S proteasome; multica 20.8 25 0.00086 26.1 0.5 16 41-56 5-20 (250)
96 4hi4_A Aerotaxis transducer AE 20.8 43 0.0015 20.8 1.6 32 36-68 9-40 (121)
97 1hjb_A Ccaat/enhancer binding 20.7 1.6E+02 0.0056 18.3 4.4 21 87-107 45-65 (87)
98 1t6f_A Geminin; coiled-coil, c 20.6 1E+02 0.0035 15.9 3.6 19 146-164 12-30 (37)
99 2bzb_A Conserved domain protei 20.6 1.4E+02 0.0047 17.4 3.8 21 118-138 25-45 (62)
100 1iru_B 20S proteasome; cell cy 20.4 26 0.00089 25.7 0.5 16 41-56 5-20 (233)
101 2ekx_A Cytoplasmic tyrosine-pr 20.4 89 0.003 19.7 3.1 42 33-74 47-99 (110)
102 1iru_D 20S proteasome; cell cy 20.1 26 0.0009 26.0 0.5 15 42-56 4-18 (248)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=7.7e-40 Score=210.10 Aligned_cols=74 Identities=47% Similarity=0.760 Sum_probs=70.3
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhcccc
Q 031002 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKD 75 (167)
Q Consensus 2 ~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~~ 75 (167)
||+||+|++|+|+++|+|||+||++||||||+||||||||+||||||||+|++|+|+||+++.||+||...+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999997754
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.2e-39 Score=214.10 Aligned_cols=79 Identities=44% Similarity=0.728 Sum_probs=75.4
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhccccccCCC
Q 031002 2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQ 80 (167)
Q Consensus 2 ~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~~~~~~~ 80 (167)
||+||+|++|+|+++|+|||+||+.||||||+||||||||+||||||||+|++|+|+||+++.||+||...+++.....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~ 79 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRT 79 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEEC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887665543
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=8.6e-38 Score=208.59 Aligned_cols=73 Identities=37% Similarity=0.585 Sum_probs=70.6
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhcc
Q 031002 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHT 73 (167)
Q Consensus 1 M~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~ 73 (167)
|||+||+|++|+|+++|+|||+||+.||||||+||||||||+||||||||+|++|+|+||++..|+++|....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~ 88 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN 88 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999997643
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.1e-37 Score=205.54 Aligned_cols=71 Identities=37% Similarity=0.508 Sum_probs=69.0
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHHhh
Q 031002 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK 71 (167)
Q Consensus 1 M~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~ 71 (167)
|||+||+|++|+|+++|+|||+||+.||||||+||||||||+||||||||+|++|+|+||+++.||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997754
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.1e-37 Score=205.75 Aligned_cols=69 Identities=38% Similarity=0.535 Sum_probs=67.7
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHH
Q 031002 1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY 69 (167)
Q Consensus 1 M~r~Ki~ik~I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY 69 (167)
|||+||+|++|+|+++|+|||+||+.||||||+||||||||+||||||||+|++|+|++|++..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 6
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=85.41 E-value=3.9 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhc
Q 031002 118 SCTLEELQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEKVSVIKICFS 165 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~--rk~~ll~~~~~~l~~k~~~l~~~~~ 165 (167)
..+++|..++...|..+=.+|.. +-+.=+.+++.-+|++.+.|+.||+
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 47888888888877776655543 2233456788889999999999996
No 7
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=81.59 E-value=10 Score=25.95 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=41.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 031002 112 LGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE------QIAQLKEKVSVIK 161 (167)
Q Consensus 112 ~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~------~~~~l~~k~~~l~ 161 (167)
-.-+++++|.++|+++-..|...+..+.+-+..+-.. +|+.|..++..|+
T Consensus 51 ~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 51 QPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 3457999999999999999999999999998776432 5788888887764
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=80.46 E-value=5.2 Score=21.71 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031002 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKIC 163 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~ 163 (167)
++|-+||.+-.+.++.-+..++++ |..||.+.+.|.+.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~k--------I~~lqkKlkeLee~ 38 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQ--------ISKLKKKQQQLEEE 38 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence 356677777777777766666554 57778888777654
No 9
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=78.12 E-value=6.4 Score=25.97 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=39.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 031002 112 LGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFN------EQIAQLKEKVSVI 160 (167)
Q Consensus 112 ~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~------~~~~~l~~k~~~l 160 (167)
-.-++++||.++|+++-..|...+..+.+-+..|-. -+|+.|..++..|
T Consensus 35 ~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 35 KPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 345899999999999999999999999999877643 2566777776654
No 10
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=75.28 E-value=6.1 Score=26.03 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 031002 115 GLASCTLEELQQIERQLEKSVSNIRARKNQVFNE------QIAQLKEKVSVI 160 (167)
Q Consensus 115 ~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~------~~~~l~~k~~~l 160 (167)
++++||.++|+++-..|...+..+.+-+..|-.. +|+.|..++..|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 7899999999999999999999999998776432 566666666544
No 11
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=74.52 E-value=21 Score=25.68 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 031002 113 GEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE------QIAQLKEKVSVIK 161 (167)
Q Consensus 113 g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~------~~~~l~~k~~~l~ 161 (167)
..++++||.++|+++-..|...+..+.+-+..|-.. +|+.|..++..|+
T Consensus 52 PLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 458999999999999999999999999998776432 5778888877764
No 12
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=73.80 E-value=3.1 Score=25.48 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 031002 144 QVFNEQIAQLKEKVSVIKICFSV 166 (167)
Q Consensus 144 ~ll~~~~~~l~~k~~~l~~~~~~ 166 (167)
+.|.++|..|..+...|..||++
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~ 40 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTL 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999975
No 13
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=70.18 E-value=3.4 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.354 Sum_probs=28.5
Q ss_pred hccCCcceeeeeecCCCcccc-ccCc-------hhHHHHHHHhhc
Q 031002 36 SVLCDAEVAVIIFSPRGKLSE-FASS-------SMQETIERYLKH 72 (167)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~-f~sp-------~v~~Vl~RY~~~ 72 (167)
+.-|++.|-+++|||+.+.|. |... .+..||+.++..
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 456999999999999998886 6542 477777777664
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=70.10 E-value=19 Score=23.25 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031002 89 HLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 89 ~l~~e~~kl~k~~~~l~~~ 107 (167)
.|-++...|.+.++.++..
T Consensus 34 ELIqEYl~LE~~~s~le~e 52 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDE 52 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 15
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=68.29 E-value=23 Score=23.37 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLEVSKRK--LLGEGLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~~~~r~--~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
..++.|..++.+|+-++..|+..++. -.+++-.-|+..+=+.+....-.+|.+.-.+|-
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KI 68 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKI 68 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999888877654 223556679999999999888888887777663
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.39 E-value=18 Score=21.98 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 116 LASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVS 158 (167)
Q Consensus 116 l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~ 158 (167)
+++++. +.+|+..|..+...|+.+ +.++.+.-..|++++.
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~k-d~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQR-DALIDELELELDQKDE 54 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444443 777778888887777766 3444444444444443
No 17
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=57.72 E-value=5.8 Score=20.40 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 031002 151 AQLKEKVSVIK 161 (167)
Q Consensus 151 ~~l~~k~~~l~ 161 (167)
+.|+..+..|+
T Consensus 18 ~~Le~eV~rLk 28 (34)
T 2oxj_A 18 XHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 44555554443
No 18
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=56.65 E-value=40 Score=23.26 Aligned_cols=67 Identities=10% Similarity=0.258 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------------cC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVSKRKL---------------LG--------EGLASCTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~~r~~---------------~g--------~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
+..+-.+..+++++++.++.++... .| -+.+-+..+|...|++.|-.+++....+-.
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka~ 122 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKAD 122 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666777777777666542 11 122234556777788888888888888888
Q ss_pred HHHHHHHHHH
Q 031002 144 QVFNEQIAQL 153 (167)
Q Consensus 144 ~ll~~~~~~l 153 (167)
+...+.+..+
T Consensus 123 e~~~e~M~~l 132 (143)
T 1ybx_A 123 EMVTAEISKI 132 (143)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 19
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=55.91 E-value=7.6 Score=25.28 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=22.2
Q ss_pred CCcceeeeeecCCCccccccCc-hhHHHHHHHhh
Q 031002 39 CDAEVAVIIFSPRGKLSEFASS-SMQETIERYLK 71 (167)
Q Consensus 39 C~~~v~livfsp~gk~~~f~sp-~v~~Vl~RY~~ 71 (167)
|+---.|+|+ |+|..|...+| .+..|++.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4333344555 88877777777 89999999754
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=53.65 E-value=1.4e+02 Score=27.52 Aligned_cols=13 Identities=23% Similarity=0.072 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhh
Q 031002 152 QLKEKVSVIKICF 164 (167)
Q Consensus 152 ~l~~k~~~l~~~~ 164 (167)
.|+.++..|..||
T Consensus 1020 ~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 1020 ETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.45 E-value=1e+02 Score=28.40 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 031002 146 FNEQIAQLK 154 (167)
Q Consensus 146 l~~~~~~l~ 154 (167)
|.+|++.|.
T Consensus 1035 L~qq~~~l~ 1043 (1080)
T 2dfs_A 1035 LKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 22
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.68 E-value=25 Score=18.44 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031002 128 ERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 128 e~~Le~~L~~Ir~rk~~l 145 (167)
...|+..|...+.-|.+|
T Consensus 17 i~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 17 ILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 23
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=51.29 E-value=8.5 Score=19.74 Aligned_cols=11 Identities=9% Similarity=0.139 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 031002 151 AQLKEKVSVIK 161 (167)
Q Consensus 151 ~~l~~k~~~l~ 161 (167)
..|+..+..|+
T Consensus 18 ~~Le~EV~RLk 28 (34)
T 3c3f_A 18 YHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44555554443
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.78 E-value=8.6 Score=20.00 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 031002 150 IAQLKEKVSVIKI 162 (167)
Q Consensus 150 ~~~l~~k~~~l~~ 162 (167)
...|+.++..|++
T Consensus 17 ~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 17 LWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3556666655543
No 25
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=49.87 E-value=3.2 Score=27.32 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=31.0
Q ss_pred ecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCCcccc
Q 031002 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSE 56 (167)
Q Consensus 11 I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~gk~~~ 56 (167)
|.++.....||.-.-..|.++.-+||.+ |++.|+|+|+-|-
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~ 61 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFR 61 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEE
Confidence 3445556667777788888999999955 5889999997664
No 26
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=49.04 E-value=7.8 Score=19.81 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 031002 151 AQLKEKVSVI 160 (167)
Q Consensus 151 ~~l~~k~~~l 160 (167)
+.|+..+..|
T Consensus 17 ~~Le~EV~RL 26 (33)
T 3m48_A 17 WNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455554444
No 27
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=43.76 E-value=12 Score=19.26 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 031002 151 AQLKEKVSVI 160 (167)
Q Consensus 151 ~~l~~k~~~l 160 (167)
..|+..+..|
T Consensus 18 ~~L~~EV~RL 27 (34)
T 2bni_A 18 HHICNELARI 27 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 28
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=41.13 E-value=15 Score=22.59 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=19.1
Q ss_pred eeeeecCCCccccccCc-hhHHHHHH
Q 031002 44 AVIIFSPRGKLSEFASS-SMQETIER 68 (167)
Q Consensus 44 ~livfsp~gk~~~f~sp-~v~~Vl~R 68 (167)
-+.||.|+|...+++.. .+.+++..
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 36789999999998886 56666543
No 29
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.82 E-value=22 Score=18.05 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 031002 151 AQLKEKVSVIK 161 (167)
Q Consensus 151 ~~l~~k~~~l~ 161 (167)
..|+..+..|+
T Consensus 17 ~~Le~EV~RLk 27 (33)
T 3c3g_A 17 YHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55555555544
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.78 E-value=64 Score=20.02 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 031002 119 CTLEELQQIERQLEKSVSNIR 139 (167)
Q Consensus 119 ls~~eL~~Le~~Le~~L~~Ir 139 (167)
+|.+=|.+|+..+..++..|.
T Consensus 3 MS~ElleqLE~KIq~avdtI~ 23 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT 23 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666543
No 31
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=40.72 E-value=11 Score=26.56 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=28.1
Q ss_pred hhhccCCcce----eeeeecCCCccccccCchhHHHHHHHhhccccccC
Q 031002 34 ELSVLCDAEV----AVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRN 78 (167)
Q Consensus 34 ELs~LC~~~v----~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~~~~~ 78 (167)
|+|.-||-+| +....-.||++|.|++..-..-. .....|-.-.|
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f-~~krnPRkl~W 53 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS-LRKVKAQKITW 53 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH-HHTCCGGGSTT
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH-HcccCcccchh
Confidence 5677888887 44555668999999998555443 23333443344
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.28 E-value=50 Score=18.64 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 031002 84 EQNMQHLKHEAANMVKKIELLEVSK 108 (167)
Q Consensus 84 ~~~~e~l~~e~~kl~k~~~~l~~~~ 108 (167)
..+++.|+.++..|+.+++.+...+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888887776543
No 33
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.91 E-value=13 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 86 NMQHLKHEAANMVKKIELLEVSKRK 110 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~~r~ 110 (167)
.++.|..+..+|+++++.|+..+-+
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777666544
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.91 E-value=44 Score=17.96 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 031002 149 QIAQLKEKVSVIKICFS 165 (167)
Q Consensus 149 ~~~~l~~k~~~l~~~~~ 165 (167)
....|..++..|+.||+
T Consensus 18 ~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 34555555555555554
No 35
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.34 E-value=16 Score=18.72 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 031002 151 AQLKEKVSVI 160 (167)
Q Consensus 151 ~~l~~k~~~l 160 (167)
..|+..+..|
T Consensus 18 ~~Le~eV~RL 27 (34)
T 2hy6_A 18 YHLANAVARL 27 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 36
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.20 E-value=82 Score=21.26 Aligned_cols=11 Identities=18% Similarity=-0.088 Sum_probs=5.8
Q ss_pred hhhhhccCCcc
Q 031002 32 AFELSVLCDAE 42 (167)
Q Consensus 32 a~ELs~LC~~~ 42 (167)
..|+|-+||+.
T Consensus 5 I~e~A~~~gvs 15 (142)
T 3gp4_A 5 IKEASEKSGVS 15 (142)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHCcC
Confidence 44555555543
No 37
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.02 E-value=13 Score=19.36 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHh
Q 031002 150 IAQLKEKVSVIKIC 163 (167)
Q Consensus 150 ~~~l~~k~~~l~~~ 163 (167)
...|+..+..|++.
T Consensus 17 ~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 17 VWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35666666666543
No 38
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.71 E-value=88 Score=20.15 Aligned_cols=16 Identities=44% Similarity=0.654 Sum_probs=6.1
Q ss_pred cccCchhHHHHHHHhh
Q 031002 56 EFASSSMQETIERYLK 71 (167)
Q Consensus 56 ~f~sp~v~~Vl~RY~~ 71 (167)
.|.+-....+.++|..
T Consensus 9 eFl~KdFSe~YE~~h~ 24 (104)
T 3s9g_A 9 EFLQRDFSETYERYHT 24 (104)
T ss_dssp -----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555554
No 39
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=35.21 E-value=92 Score=20.25 Aligned_cols=60 Identities=10% Similarity=0.185 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 85 QNMQHLKHEAANMVKKIELLEVSKRK------LLGEGLASCTLEELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 85 ~~~e~l~~e~~kl~k~~~~l~~~~r~------~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
.+++.++.++.....++......+.. ..+++++--++..-+.-...|+.+|..++.....
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766665555444433322 2334455555556666666666666666554433
No 40
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=34.44 E-value=9.3 Score=18.11 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.2
Q ss_pred CCcccccccccc
Q 031002 15 TSRQVTFSKRRN 26 (167)
Q Consensus 15 ~~R~~tf~kR~~ 26 (167)
+.|++.|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 457777777764
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.13 E-value=2.1e+02 Score=24.12 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=6.6
Q ss_pred hhHHHHHHHhh
Q 031002 61 SMQETIERYLK 71 (167)
Q Consensus 61 ~v~~Vl~RY~~ 71 (167)
.++..|++...
T Consensus 50 rLQglLdkqEr 60 (562)
T 3ghg_A 50 RMKGLIDEVNQ 60 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred chhhhHHhhcC
Confidence 46666666544
No 42
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=34.03 E-value=65 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 119 CTLEELQQIERQLEKSVSNIRARKN 143 (167)
Q Consensus 119 ls~~eL~~Le~~Le~~L~~Ir~rk~ 143 (167)
++.+++.++.+.|...|..||.|--
T Consensus 4 ls~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 4 LSKDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999998753
No 43
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.34 E-value=53 Score=16.87 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031002 88 QHLKHEAANMVKKIELLEVSKRK 110 (167)
Q Consensus 88 e~l~~e~~kl~k~~~~l~~~~r~ 110 (167)
...++++..+++++..|+.+.+.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHHh
Confidence 34566777777777777665543
No 44
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.28 E-value=22 Score=18.26 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 031002 151 AQLKEKVSVI 160 (167)
Q Consensus 151 ~~l~~k~~~l 160 (167)
..|+..+..|
T Consensus 18 ~~Le~EV~RL 27 (34)
T 1uo4_A 18 YHIENELARI 27 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555444
No 45
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.94 E-value=36 Score=17.29 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 031002 150 IAQLKEKVSVIK 161 (167)
Q Consensus 150 ~~~l~~k~~~l~ 161 (167)
...|+.++..|+
T Consensus 16 ~~~le~EV~Rl~ 27 (33)
T 2wq1_A 16 IYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 355555555443
No 46
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=31.93 E-value=76 Score=20.75 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------------cCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 89 HLKHEAANMVKKIELLEVSKRKL---------------LGE--------GLASCTLEELQQIERQLEKSVSNIRARKNQV 145 (167)
Q Consensus 89 ~l~~e~~kl~k~~~~l~~~~r~~---------------~g~--------~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~l 145 (167)
.+-.+..+++++++.++..+... .|. +.+-+. ++...|++.|-.+++....+-.+.
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~~-~d~E~LedlI~aA~ndA~~ka~~~ 90 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAAFNDAVRRAEEL 90 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHHHHh-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777776666441 110 112233 666777888888888888888877
Q ss_pred HHHHHHHH
Q 031002 146 FNEQIAQL 153 (167)
Q Consensus 146 l~~~~~~l 153 (167)
..+.+..+
T Consensus 91 ~~e~m~~~ 98 (112)
T 1j8b_A 91 QKEKMASV 98 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 47
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=31.93 E-value=65 Score=19.74 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=28.3
Q ss_pred hhhhhhhhccCCcceeeeeecCCCccccccCchhHHHHHHHhhccc
Q 031002 29 LKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (167)
Q Consensus 29 ~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~ 74 (167)
.|+|.|.+.+++=+.|++.|. ++..-|++|.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 588999999999888887775 57778889988654
No 48
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.90 E-value=73 Score=18.52 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhc
Q 031002 149 QIAQLKEKVSVIKICFS 165 (167)
Q Consensus 149 ~~~~l~~k~~~l~~~~~ 165 (167)
++..|+.++..|..+|+
T Consensus 31 ~~~~Le~~v~~L~~eN~ 47 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNY 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555553
No 49
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=31.26 E-value=5 Score=24.90 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=18.1
Q ss_pred eeeeeecCCCccccccCchhHHHHHHHhhccc
Q 031002 43 VAVIIFSPRGKLSEFASSSMQETIERYLKHTK 74 (167)
Q Consensus 43 v~livfsp~gk~~~f~sp~v~~Vl~RY~~~~~ 74 (167)
|++|||+|. +++..+. ++...+..|++...
T Consensus 16 VaLlvfGpk-kLP~l~r-~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGPS-KLPEIGR-AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCTT-THHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhheeCcc-HhHHHHH-HHHHHHHHHHHHHH
Confidence 789999995 5654433 34445555555443
No 50
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=31.03 E-value=30 Score=21.44 Aligned_cols=30 Identities=3% Similarity=0.181 Sum_probs=22.9
Q ss_pred hccCCcceeeeeecCCCccccccCchhHHHH
Q 031002 36 SVLCDAEVAVIIFSPRGKLSEFASSSMQETI 66 (167)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~f~sp~v~~Vl 66 (167)
+++..++.++++++++|+. .|.+|.+..++
T Consensus 16 ~il~~~~~~i~~~D~~g~i-~~~N~a~~~l~ 45 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLRI-IYVNSGCLRHV 45 (118)
T ss_dssp CSSSCTTCEEEEECTTCBE-EEECHHHHHHH
T ss_pred HHHhhCCceEEEECCCCeE-EEECHHHHHHh
Confidence 6788899999999999854 46677655544
No 51
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.96 E-value=95 Score=19.08 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031002 90 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKVSVIKICFS 165 (167)
Q Consensus 90 l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~l~~~~~ 165 (167)
++..+...+.+++.+.. +-+||..=...|+..+.++..... -+...|..|++|...|.+.++
T Consensus 16 l~E~~~q~qaEl~sLrr-------------T~~EL~~G~~KL~~mi~~l~~E~~-~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKR-------------TEEDLKKGHQKLEEMVTRLDQEVA-EVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555554 346778888888888888877754 456788999999998877653
No 52
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=30.38 E-value=12 Score=24.85 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=11.0
Q ss_pred hhhhccCCcceee
Q 031002 33 FELSVLCDAEVAV 45 (167)
Q Consensus 33 ~ELs~LC~~~v~l 45 (167)
..+.+|||++|-.
T Consensus 30 ~~ftaLCG~~VTp 42 (116)
T 3rmq_A 30 RPFTALCGETVTP 42 (116)
T ss_dssp CCEECTTSCEECC
T ss_pred CccccccCCeecC
Confidence 5789999999874
No 53
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=30.36 E-value=58 Score=18.03 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=14.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHH
Q 031002 112 LGEGLASCTLEELQQIERQLEK 133 (167)
Q Consensus 112 ~g~~l~~ls~~eL~~Le~~Le~ 133 (167)
.|++.++||-++|..-+..|..
T Consensus 3 ~~~n~~gls~eqlehrerslqt 24 (55)
T 3sl9_C 3 LGENPDGLSQEQLEHRERSLQT 24 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHH
T ss_pred cccCCcccCHHHHHHHHHHHHH
Confidence 5788999999999887766653
No 54
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=29.50 E-value=13 Score=28.63 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.7
Q ss_pred hccCCcceeeeeecCCCcccc
Q 031002 36 SVLCDAEVAVIIFSPRGKLSE 56 (167)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~ 56 (167)
|+-.|-+-.+-+|||+|++|.
T Consensus 3 ~~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 3 SIGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp --CCCTTSSTTCCCTTSCCHH
T ss_pred CCcCCccCCcccCCCCCchHH
Confidence 344566778889999999985
No 55
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=29.41 E-value=78 Score=17.64 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031002 140 ARKNQVFNEQIAQLKEKVSVIK 161 (167)
Q Consensus 140 ~rk~~ll~~~~~~l~~k~~~l~ 161 (167)
.=|+++..+.+.+++++...+.
T Consensus 24 ~LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 24 ELKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999988887764
No 56
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.39 E-value=1.3e+02 Score=20.17 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=46.4
Q ss_pred hhHHHHHHHhhccccccCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHHHHHHH
Q 031002 61 SMQETIERYLKHTKDTRNKQQP-TEQNMQHLKHEAANMVKKIELLEVSKRKLLG--EGLASCTLEELQQIERQLEKSVSN 137 (167)
Q Consensus 61 ~v~~Vl~RY~~~~~~~~~~~~~-~~~~~e~l~~e~~kl~k~~~~l~~~~r~~~g--~~l~~ls~~eL~~Le~~Le~~L~~ 137 (167)
.+..++.+|............. ...-...|+..+..+...+++|+...+-... ..+ +++..|+..-..++...-..
T Consensus 42 ~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~ 120 (130)
T 4dnd_A 42 TARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREA 120 (130)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 4666677777654432221111 0112335677777788888888777654332 223 58888888877777777666
Q ss_pred HHHHHHH
Q 031002 138 IRARKNQ 144 (167)
Q Consensus 138 Ir~rk~~ 144 (167)
|..=+.+
T Consensus 121 I~~mk~~ 127 (130)
T 4dnd_A 121 VQEMKDH 127 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654444
No 57
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.01 E-value=70 Score=16.96 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHHH
Q 031002 117 ASCTLEELQQIERQLEK 133 (167)
Q Consensus 117 ~~ls~~eL~~Le~~Le~ 133 (167)
+++|.+||-.|+..|..
T Consensus 15 egfspeelaaleselqa 31 (48)
T 1g6u_A 15 EGFSPEELAALESELQA 31 (48)
T ss_dssp TTCSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57789998888776544
No 58
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.15 E-value=54 Score=15.34 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 031002 92 HEAANMVKKIELL 104 (167)
Q Consensus 92 ~e~~kl~k~~~~l 104 (167)
.++..|++.+..+
T Consensus 8 keledlqerlrkl 20 (27)
T 3twe_A 8 KELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 59
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=27.94 E-value=33 Score=24.45 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=25.8
Q ss_pred cCCcceeeeeecCCCccccccCchhHHHHHHHhh
Q 031002 38 LCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK 71 (167)
Q Consensus 38 LC~~~v~livfsp~gk~~~f~sp~v~~Vl~RY~~ 71 (167)
..+..+++|||||+=-...|+-..+..|+++...
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~ 93 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEKK 93 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHT
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhcc
Confidence 4578899999999865555776788888887643
No 60
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.45 E-value=88 Score=17.61 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhh
Q 031002 150 IAQLKEKVSVIKICF 164 (167)
Q Consensus 150 ~~~l~~k~~~l~~~~ 164 (167)
++.|..++..|..||
T Consensus 24 ~~~LE~~v~~L~~eN 38 (55)
T 1dh3_A 24 VKSLENRVAVLENQN 38 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555555
No 61
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=27.41 E-value=1.4e+02 Score=20.17 Aligned_cols=13 Identities=0% Similarity=-0.008 Sum_probs=7.9
Q ss_pred hhhhhhccCCcce
Q 031002 31 KAFELSVLCDAEV 43 (167)
Q Consensus 31 Ka~ELs~LC~~~v 43 (167)
+..|+|-+||+.+
T Consensus 18 ~I~evA~~~gvs~ 30 (148)
T 3gpv_A 18 TIGQVAKMQHLTI 30 (148)
T ss_dssp CHHHHHHHTTCCH
T ss_pred eHHHHHHHHCcCH
Confidence 4566666666544
No 62
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.85 E-value=1.1e+02 Score=18.68 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=6.7
Q ss_pred CCCHHHHHHHHH
Q 031002 118 SCTLEELQQIER 129 (167)
Q Consensus 118 ~ls~~eL~~Le~ 129 (167)
|+|++|...+..
T Consensus 16 GfsL~eIk~~l~ 27 (99)
T 1q08_A 16 GFSLESIRELLS 27 (99)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 455666555554
No 63
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=26.66 E-value=17 Score=27.27 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=14.9
Q ss_pred ccCCcceeeeeecCCCcccc
Q 031002 37 VLCDAEVAVIIFSPRGKLSE 56 (167)
Q Consensus 37 ~LC~~~v~livfsp~gk~~~ 56 (167)
+-.+=|-.+-+|||+|++|.
T Consensus 3 ~~~~yd~~~t~fsp~Grl~Q 22 (254)
T 1iru_G 3 IGTGYDLSASTFSPDGRVFQ 22 (254)
T ss_dssp CCSSTTSCTTCCCTTSCCHH
T ss_pred cccccCCCCccCCcCCccHH
Confidence 33455667789999999984
No 64
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.63 E-value=1.3e+02 Score=19.35 Aligned_cols=59 Identities=14% Similarity=0.303 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 86 NMQHLKHEAANMVKKIELLEVSKRKLLG-EGLASCTLEELQQIERQLEKSVSNIRARKNQ 144 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~~r~~~g-~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ 144 (167)
.++.++..+..+...++.+...+..... .+.+.-.-.+|..+...+-..-..|+.+...
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~ 72 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKS 72 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777665544332 2222222235555555544444445444443
No 65
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=26.33 E-value=4e+02 Score=24.81 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=35.4
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 031002 111 LLGEGLASCTLEELQQIERQLEKSVSNIRARK----NQVFNEQIAQLKEKVSVI 160 (167)
Q Consensus 111 ~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk----~~ll~~~~~~l~~k~~~l 160 (167)
+++.+|..|+.++...|....+.....+..=+ ..|+.+.++.+.++....
T Consensus 1116 IL~MrL~~LT~ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~~~~~ 1169 (1177)
T 4gfh_A 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEF 1169 (1177)
T ss_dssp HHSSBGGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888887776543 246667777777666543
No 66
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=26.02 E-value=82 Score=18.42 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 031002 115 GLASCTLEELQQIERQLEKSVSNIRA----RKNQVFNEQIAQLKEK 156 (167)
Q Consensus 115 ~l~~ls~~eL~~Le~~Le~~L~~Ir~----rk~~ll~~~~~~l~~k 156 (167)
++..++.+++..+...|+..+...-+ -+...+.++|..|+.+
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34555655655555555555544433 3334566666666554
No 67
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=25.88 E-value=1.2e+02 Score=18.50 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 031002 117 ASCTLEELQQIERQLEKSVSNIRAR 141 (167)
Q Consensus 117 ~~ls~~eL~~Le~~Le~~L~~Ir~r 141 (167)
..+|-+||.++...++.-|..-..+
T Consensus 12 ~~ltreELi~l~lk~~~~l~~k~~~ 36 (75)
T 3tso_C 12 RSLTYEEVLQELVKHKELLRRKDTH 36 (75)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444443333
No 68
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=25.83 E-value=1.4e+02 Score=19.26 Aligned_cols=48 Identities=6% Similarity=0.228 Sum_probs=23.4
Q ss_pred cCCCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 112 LGEGLASCTLEELQQIERQ-----LEKSVSNIRARKNQVFNEQIAQLKEKVSV 159 (167)
Q Consensus 112 ~g~~l~~ls~~eL~~Le~~-----Le~~L~~Ir~rk~~ll~~~~~~l~~k~~~ 159 (167)
++.|+..+|-+||..+... .-+...+|..|-..+-.++-...+++.+.
T Consensus 7 ~a~DFSk~Sd~ELl~mAG~V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~ 59 (100)
T 2xrh_A 7 MAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHE 59 (100)
T ss_dssp CCCSSTTSCHHHHHHTTTTSCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cccchhhcCHHHHHHHHCcCChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666666666555422 23344455555444444444444444433
No 69
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=25.41 E-value=46 Score=19.22 Aligned_cols=25 Identities=16% Similarity=0.505 Sum_probs=19.4
Q ss_pred eeeecCCCccccccCc-hhHHHHHHH
Q 031002 45 VIIFSPRGKLSEFASS-SMQETIERY 69 (167)
Q Consensus 45 livfsp~gk~~~f~sp-~v~~Vl~RY 69 (167)
+.|+-|+|+..+|+.+ .+.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 4567789998888875 777787776
No 70
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.81 E-value=2.7e+02 Score=22.38 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=19.3
Q ss_pred chhhhhhhhhccCCcceeeeeecCCCccccccCc-hhHHHHHHHh
Q 031002 27 GLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS-SMQETIERYL 70 (167)
Q Consensus 27 gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp-~v~~Vl~RY~ 70 (167)
-++-++..-|---|+..|+ .+ .=-+-.|+- .+..+|++..
T Consensus 22 R~vE~~~s~Ck~~d~~~C~---De-DwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 22 RLVERQQSACKETGWPFCS---DE-DWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred chhhhhccccCCCCCCCCc---hh-hccCCCCccchHHHHHHHhh
Confidence 3344455555555566665 11 101113333 5777777665
No 71
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=24.50 E-value=70 Score=15.42 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 122 EELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 122 ~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
++|..|...|+.--+..+.+-++|+
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444443
No 72
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=24.25 E-value=19 Score=27.24 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=10.8
Q ss_pred CcceeeeeecCCCcccc
Q 031002 40 DAEVAVIIFSPRGKLSE 56 (167)
Q Consensus 40 ~~~v~livfsp~gk~~~ 56 (167)
+-|-++-+|||+|++|.
T Consensus 11 ~yd~~~t~fSp~Grl~Q 27 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQ 27 (264)
T ss_dssp -----CCCCCSSSSCHH
T ss_pred ccCCCcceECCCCeeHH
Confidence 45677889999999984
No 73
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=23.74 E-value=9.5 Score=29.09 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=21.3
Q ss_pred hhhccCCcceeeeeecCCCccccccCc
Q 031002 34 ELSVLCDAEVAVIIFSPRGKLSEFASS 60 (167)
Q Consensus 34 ELs~LC~~~v~livfsp~gk~~~f~sp 60 (167)
+|.-.+|++|++||+.++|+++..+.+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~ 164 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVV 164 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCc
Confidence 445668999999999999988766554
No 74
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=23.62 E-value=24 Score=16.93 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=6.8
Q ss_pred hhhhhccCC
Q 031002 32 AFELSVLCD 40 (167)
Q Consensus 32 a~ELs~LC~ 40 (167)
.+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 479999995
No 75
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=23.58 E-value=80 Score=23.74 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=8.0
Q ss_pred ecCCCCccccccccccchhhhhhhhhccCCcceeeeeecCCC--ccccccCc---hhHHHHHHHhhc
Q 031002 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRG--KLSEFASS---SMQETIERYLKH 72 (167)
Q Consensus 11 I~n~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~livfsp~g--k~~~f~sp---~v~~Vl~RY~~~ 72 (167)
|++...=.+|+.+|-.|+..|..+|+.--+ +++ .+|.|+.. .+-.+-++|.++
T Consensus 119 iev~~~~~itmrkri~~Itqrlg~ltL~~~---------~~~eIdLFewA~~L~q~i~~ln~k~~~~ 176 (246)
T 1z56_A 119 MQDDEVWKVVMELESSAIIRKIAELTLHPV---------KKGEIDLFEMADKLYKDICCVNDSYRNI 176 (246)
T ss_dssp -------------------------------------------------CTTSGGGTTHHHHHHHHT
T ss_pred ceeCCEEEEEEeehhhHHHhhheeEEeecC---------ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445578888888998888777654333 222 46667443 455555666653
No 76
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.58 E-value=1.1e+02 Score=23.71 Aligned_cols=47 Identities=9% Similarity=0.035 Sum_probs=22.9
Q ss_pred hhHHHHHHHhhccccccC-CC-CCchhhHHHHHHHHHHHHHHHHHHHHH
Q 031002 61 SMQETIERYLKHTKDTRN-KQ-QPTEQNMQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 61 ~v~~Vl~RY~~~~~~~~~-~~-~~~~~~~e~l~~e~~kl~k~~~~l~~~ 107 (167)
.+..|+..|.-..-.-.. .. ..-.+.+..++.++..+...++.++..
T Consensus 200 ~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~ 248 (357)
T 3rrk_A 200 AARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREE 248 (357)
T ss_dssp HHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777766543222111 11 011334555666666666666555443
No 77
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.49 E-value=52 Score=17.45 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=17.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 031002 114 EGLASCTLEELQQIERQLEKSV 135 (167)
Q Consensus 114 ~~l~~ls~~eL~~Le~~Le~~L 135 (167)
+.+.+||+-|+.+|.+.|++..
T Consensus 8 e~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 8 EAIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHHHH
Confidence 3467899999999999998754
No 78
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.21 E-value=1e+02 Score=18.95 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 031002 145 VFNEQIAQLKEKVSVIKICFS 165 (167)
Q Consensus 145 ll~~~~~~l~~k~~~l~~~~~ 165 (167)
-|..++.+++.....|++||.
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~ 58 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENK 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555553
No 79
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=23.21 E-value=23 Score=25.66 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=26.9
Q ss_pred hhhhhccCCcceeeeeecCCCccccccCchhHHHH----HHHhh
Q 031002 32 AFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETI----ERYLK 71 (167)
Q Consensus 32 a~ELs~LC~~~v~livfsp~gk~~~f~sp~v~~Vl----~RY~~ 71 (167)
|+.+++.|+ .=-+.+|.|+=.-|+++++++.++| +||..
T Consensus 131 aHaia~S~~-g~~~tlFDPN~GEF~v~s~~~~dliqsL~~rY~~ 173 (188)
T 1ukf_A 131 GHAIACSCE-GSQFKLFDPNLGEFQSSRSAAPQLIKGLIDHYNS 173 (188)
T ss_dssp EEEEEEEEE-TTEEEEEETTTEEEEEETTTHHHHHHHHHHHHHH
T ss_pred ceeEEeccC-CCeEEEeCCCCceeeccHHHHHHHHHHHHHhccC
Confidence 666666664 4447788888778888887655555 66643
No 80
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=23.06 E-value=19 Score=26.60 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=10.3
Q ss_pred eeeeecCCCcccc
Q 031002 44 AVIIFSPRGKLSE 56 (167)
Q Consensus 44 ~livfsp~gk~~~ 56 (167)
.+-+|||+|++|.
T Consensus 3 ~~t~fsp~Grl~Q 15 (242)
T 1ryp_E 3 GVSTFSPEGRLFQ 15 (242)
T ss_dssp CTTCBCTTSCBHH
T ss_pred CCceECCCCcChH
Confidence 4568999999884
No 81
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=22.40 E-value=22 Score=26.31 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=11.8
Q ss_pred ceeeeeecCCCcccc
Q 031002 42 EVAVIIFSPRGKLSE 56 (167)
Q Consensus 42 ~v~livfsp~gk~~~ 56 (167)
|-.+-+|||+|++|.
T Consensus 3 d~~~t~fsp~Grl~Q 17 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQ 17 (241)
T ss_dssp CCCCSCCBTTTBCHH
T ss_pred CCCceeECCCCcchH
Confidence 446678999999984
No 82
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=22.27 E-value=47 Score=20.98 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=16.6
Q ss_pred CcceeeeeecCCCccccccCchhHHHH
Q 031002 40 DAEVAVIIFSPRGKLSEFASSSMQETI 66 (167)
Q Consensus 40 ~~~v~livfsp~gk~~~f~sp~v~~Vl 66 (167)
.++-++++.+++| .+.|.||++..++
T Consensus 7 ~~~d~i~v~d~~G-~i~yvn~~~~~~l 32 (111)
T 2vlg_A 7 TKTDIHAVLASNG-RIIYISANSKLHL 32 (111)
T ss_dssp --CCEEEEECTTS-BEEEECTTHHHHH
T ss_pred cCCCEEEEEcCCC-eEEEEChHHHHHh
Confidence 3445677778888 4568888776554
No 83
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=22.00 E-value=34 Score=28.73 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=25.3
Q ss_pred hhhccCCcceeeee-----------ecCCCccccccCchhHHHH----HHHhh
Q 031002 34 ELSVLCDAEVAVII-----------FSPRGKLSEFASSSMQETI----ERYLK 71 (167)
Q Consensus 34 ELs~LC~~~v~liv-----------fsp~gk~~~f~sp~v~~Vl----~RY~~ 71 (167)
=||-.|.++++.-- ..-+|+.|.||||.-+.+. +||.+
T Consensus 397 ~~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~~~Pe~y~~ 449 (511)
T 3u52_A 397 QLCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFKHEPEKYIQ 449 (511)
T ss_dssp CBCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHHHCHHHHTT
T ss_pred CccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHHHCHHHHhc
Confidence 36677888876531 1127899999999766664 55654
No 84
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.91 E-value=75 Score=20.72 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=28.5
Q ss_pred hhhhhccC--------CcceeeeeecCCCccccccC---chhHHHHHHHhhccc
Q 031002 32 AFELSVLC--------DAEVAVIIFSPRGKLSEFAS---SSMQETIERYLKHTK 74 (167)
Q Consensus 32 a~ELs~LC--------~~~v~livfsp~gk~~~f~s---p~v~~Vl~RY~~~~~ 74 (167)
..=||+.+ .+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 51 ~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 104 (125)
T 2dm0_A 51 SYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAA 104 (125)
T ss_dssp EEEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCCC
T ss_pred CEEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCCC
Confidence 34567776 35556666667776554333 489999999998654
No 85
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.88 E-value=1.8e+02 Score=19.14 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 86 NMQHLKHEAANMVKKIELLEVSKRK------LLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~~r~------~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
+++.++.++.....++-.....++. ..+++++--++..-..-...|+.+|..++.......
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666665555444433322 234456656666666666777777776665544433
No 86
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.77 E-value=81 Score=17.73 Aligned_cols=21 Identities=33% Similarity=0.273 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 031002 115 GLASCTLEELQQIERQLEKSV 135 (167)
Q Consensus 115 ~l~~ls~~eL~~Le~~Le~~L 135 (167)
.|..+|.+||...-..||..+
T Consensus 6 fLk~ls~eEL~~rl~~Ld~~M 26 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALDPMM 26 (51)
T ss_dssp GGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHccHHH
Confidence 355689999988776666544
No 87
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=21.69 E-value=2.1e+02 Score=19.83 Aligned_cols=61 Identities=8% Similarity=0.283 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031002 86 NMQHLKHEAANMVKKIELLEVSKRKLLGE-GLASCTLEELQQIERQLEKSVSNIRARKNQVF 146 (167)
Q Consensus 86 ~~e~l~~e~~kl~k~~~~l~~~~r~~~g~-~l~~ls~~eL~~Le~~Le~~L~~Ir~rk~~ll 146 (167)
.++.++..+..+...+..+...+....+. .-+.---.+|..+...+...-..|+.+...|-
T Consensus 44 ~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 44 QVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777666554442 11222235666666666666666666655543
No 88
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.54 E-value=3.4e+02 Score=22.36 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=13.8
Q ss_pred chhhhhhhhhccCCcceeeeeecCCCccccccCc--hhHHHHHHHhh
Q 031002 27 GLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLK 71 (167)
Q Consensus 27 gl~KKa~ELs~LC~~~v~livfsp~gk~~~f~sp--~v~~Vl~RY~~ 71 (167)
++.||..|.. -++.-| ..+++.+=.++.. .+.+.|-+|..
T Consensus 55 ~~~~~~~~~~--~~a~~c---~~~~~~~G~~CPTtC~l~D~L~k~q~ 96 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGC---KHPLDELGVLCPTGCELQTTLLKQEK 96 (464)
T ss_dssp --------CC--CCCSCE---ECSSTTTCEEEECTTHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCc---cccCCCccCcCCCccHHHHHHHHhhh
Confidence 3445555544 333333 3333333333322 46666666654
No 89
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=21.47 E-value=44 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=24.2
Q ss_pred hhccCCcceeeeee----------cCCCccccccCchhHHHH----HHHhh
Q 031002 35 LSVLCDAEVAVIIF----------SPRGKLSEFASSSMQETI----ERYLK 71 (167)
Q Consensus 35 Ls~LC~~~v~livf----------sp~gk~~~f~sp~v~~Vl----~RY~~ 71 (167)
||-.|.+++|..-- .-+|+.|.|||+.-+.+. +||.+
T Consensus 396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~~~Pe~y~~ 446 (500)
T 3ge3_A 396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQQDPVQYQN 446 (500)
T ss_dssp BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHHHCHHHHTT
T ss_pred cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHHhChHHHhC
Confidence 66778888775211 116889999999666664 55654
No 90
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.40 E-value=85 Score=15.32 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLE 105 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~ 105 (167)
+..+++++..|++++..++
T Consensus 4 iaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3346667777776666654
No 91
>2hq4_A Hypothetical protein PH1570; singleton protein, structural genomics, PSI southeast collaboratory for structural genomics, secsg; 1.99A {Pyrococcus horikoshii} SCOP: d.342.1.1
Probab=21.28 E-value=36 Score=23.38 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=21.7
Q ss_pred eeecCCCccccccCchhHHHHHHHhh
Q 031002 46 IIFSPRGKLSEFASSSMQETIERYLK 71 (167)
Q Consensus 46 ivfsp~gk~~~f~sp~v~~Vl~RY~~ 71 (167)
.+..|.|.+|.|.-|++.+.|-+|..
T Consensus 134 filD~kg~LfvFNKPs~~e~ilKYi~ 159 (161)
T 2hq4_A 134 FILDPRGRLFIFNKPSIANKILKYIW 159 (161)
T ss_dssp EEECTTSEEEEESSTTHHHHHHTTTT
T ss_pred eEECCCceEEEecCccHHHHHHHHHh
Confidence 34567889999999999999988864
No 92
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.05 E-value=1.5e+02 Score=18.68 Aligned_cols=12 Identities=0% Similarity=0.166 Sum_probs=6.3
Q ss_pred hhhhhccCCcce
Q 031002 32 AFELSVLCDAEV 43 (167)
Q Consensus 32 a~ELs~LC~~~v 43 (167)
..|+|-+||+.+
T Consensus 5 i~e~A~~~gvs~ 16 (109)
T 1r8d_A 5 VKQVAEISGVSI 16 (109)
T ss_dssp HHHHHHHHSCCH
T ss_pred HHHHHHHHCcCH
Confidence 455555565443
No 93
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=21.00 E-value=1.4e+02 Score=17.53 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 031002 88 QHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRAR 141 (167)
Q Consensus 88 e~l~~e~~kl~k~~~~l~~~~r~~~g~~l~~ls~~eL~~Le~~Le~~L~~Ir~r 141 (167)
+.+..++..+++++-.+. ..+-.|.. + +...+..+...+-..++-++++
T Consensus 12 ~EL~~~l~elk~ELf~LR--~q~atgql-~--n~~~ir~vRr~IARi~Tvl~er 60 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELR--FQAAAGQL-A--QPHRVRQLRREVAQLNTVKAEL 60 (67)
T ss_dssp HHHHHHHHTHHHHHHHHH--HHHHHSCC-C--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHhCCC-c--ccHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554443 12344332 1 4556666666666655555554
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.95 E-value=1.4e+02 Score=17.74 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 031002 146 FNEQIAQLKEKVSVIKICFSV 166 (167)
Q Consensus 146 l~~~~~~l~~k~~~l~~~~~~ 166 (167)
+..+...|+..+..|..||..
T Consensus 48 l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666643
No 95
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=20.82 E-value=25 Score=26.15 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.9
Q ss_pred cceeeeeecCCCcccc
Q 031002 41 AEVAVIIFSPRGKLSE 56 (167)
Q Consensus 41 ~~v~livfsp~gk~~~ 56 (167)
-|-.+-+|||+|++|.
T Consensus 5 yd~~~t~fsp~Grl~Q 20 (250)
T 1ryp_B 5 YSFSLTTFSPSGKLGQ 20 (250)
T ss_dssp CCSBSSCBCTTSCBHH
T ss_pred ccCCceeECCCCccHH
Confidence 4567789999999984
No 96
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=20.79 E-value=43 Score=20.78 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=25.7
Q ss_pred hccCCcceeeeeecCCCccccccCchhHHHHHH
Q 031002 36 SVLCDAEVAVIIFSPRGKLSEFASSSMQETIER 68 (167)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~f~sp~v~~Vl~R 68 (167)
++|-.+..+++++.++|+.. |.+|.+..++..
T Consensus 9 ~il~~~~~gviv~D~~g~I~-~~N~a~~~llg~ 40 (121)
T 4hi4_A 9 SALDNVSANVMIADNDLNII-YMNRTVSEMLGR 40 (121)
T ss_dssp HHHTTSSSEEEEEETTCBEE-EECHHHHHHHHH
T ss_pred HHHhcCCccEEEEcCCCeEE-EecHHHHHHHHH
Confidence 46677889999999999654 888888888764
No 97
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.67 E-value=1.6e+02 Score=18.30 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031002 87 MQHLKHEAANMVKKIELLEVS 107 (167)
Q Consensus 87 ~e~l~~e~~kl~k~~~~l~~~ 107 (167)
+..|..+...|+.+++.|+.+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444
No 98
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.60 E-value=1e+02 Score=15.91 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 031002 146 FNEQIAQLKEKVSVIKICF 164 (167)
Q Consensus 146 l~~~~~~l~~k~~~l~~~~ 164 (167)
+...|.+-+.+...|++||
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444555555555
No 99
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=20.59 E-value=1.4e+02 Score=17.36 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 031002 118 SCTLEELQQIERQLEKSVSNI 138 (167)
Q Consensus 118 ~ls~~eL~~Le~~Le~~L~~I 138 (167)
|++-.+-..+.+.||..+...
T Consensus 25 Gl~~~~vI~~SQeLD~LIn~Y 45 (62)
T 2bzb_A 25 GLDHDKVLLFSRDLDKLINKF 45 (62)
T ss_dssp HCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 778888889999999887654
No 100
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=20.45 E-value=26 Score=25.69 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=12.7
Q ss_pred cceeeeeecCCCcccc
Q 031002 41 AEVAVIIFSPRGKLSE 56 (167)
Q Consensus 41 ~~v~livfsp~gk~~~ 56 (167)
-|-.+-+|||+|++|.
T Consensus 5 yd~~~t~fsp~Grl~Q 20 (233)
T 1iru_B 5 YSFSLTTFSPSGKLVQ 20 (233)
T ss_dssp CCSBSCCCCTTSCCHH
T ss_pred ccCCceeECCCCeEeh
Confidence 3556779999999984
No 101
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=20.44 E-value=89 Score=19.74 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=27.4
Q ss_pred hhhhccC--------CcceeeeeecCCCccccccC---chhHHHHHHHhhccc
Q 031002 33 FELSVLC--------DAEVAVIIFSPRGKLSEFAS---SSMQETIERYLKHTK 74 (167)
Q Consensus 33 ~ELs~LC--------~~~v~livfsp~gk~~~f~s---p~v~~Vl~RY~~~~~ 74 (167)
.=||+.+ .+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 47 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 99 (110)
T 2ekx_A 47 YTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSA 99 (110)
T ss_dssp EEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTCCCSCHHHHHHHHHHSCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCCccCCHHHHHHHHeeCCC
Confidence 4466664 34555566666775444333 489999999998764
No 102
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=20.13 E-value=26 Score=26.02 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=11.6
Q ss_pred ceeeeeecCCCcccc
Q 031002 42 EVAVIIFSPRGKLSE 56 (167)
Q Consensus 42 ~v~livfsp~gk~~~ 56 (167)
|-.+-+|||+|++|.
T Consensus 4 d~~~t~fsp~Grl~Q 18 (248)
T 1iru_D 4 DRAITVFSPDGHLFQ 18 (248)
T ss_dssp CCCCSCCCTTSCCHH
T ss_pred cCCCceECCCCcchH
Confidence 345678999999884
Done!