Your job contains 1 sequence.
>031004
MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASAKSTSPLNTKRSF
KVRCCQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGR
LASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031004
(167 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2203010 - symbol:emb1473 "embryo defective 147... 407 5.5e-38 1
UNIPROTKB|Q9KUF1 - symbol:rplM "50S ribosomal protein L13... 144 4.1e-10 1
TIGR_CMR|VC_0570 - symbol:VC_0570 "ribosomal protein L13"... 144 4.1e-10 1
UNIPROTKB|P66065 - symbol:rplM "50S ribosomal protein L13... 143 5.2e-10 1
UNIPROTKB|P0AA10 - symbol:rplM species:83333 "Escherichia... 141 8.4e-10 1
TIGR_CMR|CPS_4443 - symbol:CPS_4443 "ribosomal protein L1... 138 1.8e-09 1
TIGR_CMR|GSU_2876 - symbol:GSU_2876 "ribosomal protein L1... 137 2.2e-09 1
TIGR_CMR|BA_0143 - symbol:BA_0143 "ribosomal protein L13"... 134 4.7e-09 1
TIGR_CMR|SO_3940 - symbol:SO_3940 "ribosomal protein L13"... 133 5.9e-09 1
TIGR_CMR|SPO_1691 - symbol:SPO_1691 "ribosomal protein L1... 132 7.6e-09 1
TIGR_CMR|NSE_0840 - symbol:NSE_0840 "ribosomal protein L1... 128 2.0e-08 1
TIGR_CMR|APH_1108 - symbol:APH_1108 "ribosomal protein L1... 122 8.7e-08 1
TIGR_CMR|CHY_2274 - symbol:CHY_2274 "ribosomal protein L1... 118 2.3e-07 1
TIGR_CMR|CJE_1653 - symbol:CJE_1653 "ribosomal protein L1... 113 7.8e-07 1
ASPGD|ASPL0000005099 - symbol:AN9469 species:162425 "Emer... 112 1.7e-06 1
CGD|CAL0004144 - symbol:orf19.3348 species:5476 "Candida ... 112 2.9e-06 1
TIGR_CMR|DET_0505 - symbol:DET_0505 "ribosomal protein L1... 104 7.0e-06 1
TIGR_CMR|ECH_1019 - symbol:ECH_1019 "ribosomal protein L1... 105 2.8e-05 1
SGD|S000005676 - symbol:MRPL23 "Mitochondrial ribosomal p... 99 0.00042 1
>TAIR|locus:2203010 [details] [associations]
symbol:emb1473 "embryo defective 1473" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PROSITE:PS00783 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0009579 EMBL:AC007260
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 EMBL:X87333 EMBL:AY063105 EMBL:AF370318
IPI:IPI00520181 PIR:A96815 RefSeq:NP_177984.1 UniGene:At.20962
HSSP:O59300 ProteinModelPortal:Q9SYL9 SMR:Q9SYL9 STRING:Q9SYL9
PaxDb:Q9SYL9 PRIDE:Q9SYL9 ProMEX:Q9SYL9 EnsemblPlants:AT1G78630.1
GeneID:844199 KEGG:ath:AT1G78630 GeneFarm:82 TAIR:At1g78630
HOGENOM:HOG000225286 InParanoid:Q9SYL9 KO:K02871 OMA:HVNTDKP
PhylomeDB:Q9SYL9 ProtClustDB:CLSN2679548 Genevestigator:Q9SYL9
GermOnline:AT1G78630 TIGRFAMs:TIGR01066 Uniprot:Q9SYL9
Length = 241
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 80/126 (63%), Positives = 94/126 (74%)
Query: 34 SSSTTPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEV 84
S +PFLGFS+ + S N+KR +V+C SLVP NQRWMF++ E
Sbjct: 22 SERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEA 81
Query: 85 NGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMG 144
NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMG
Sbjct: 82 NGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMG 141
Query: 145 AYVIVV 150
A+VIVV
Sbjct: 142 AFVIVV 147
>UNIPROTKB|Q9KUF1 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVV
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVV 57
>TIGR_CMR|VC_0570 [details] [associations]
symbol:VC_0570 "ribosomal protein L13" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVV
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVV 57
>UNIPROTKB|P66065 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005829
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:A70977 RefSeq:NP_217960.1
RefSeq:NP_338075.1 RefSeq:YP_006516932.1 ProteinModelPortal:P66065
SMR:P66065 PhosSite:P12061578 PRIDE:P66065
EnsemblBacteria:EBMYCT00000002385 EnsemblBacteria:EBMYCT00000071846
GeneID:13317050 GeneID:887584 GeneID:926638 KEGG:mtc:MT3548
KEGG:mtu:Rv3443c KEGG:mtv:RVBD_3443c PATRIC:18129537
TubercuList:Rv3443c OMA:FEITQVA ChEMBL:CHEMBL1933 Uniprot:P66065
Length = 147
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PKA D + ++WYV+DATD +LGRLA A +RGK+ T+ P+VD G +VIV+
Sbjct: 3 TYAPKAGD---TTRSWYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVI 57
>UNIPROTKB|P0AA10 [details] [associations]
symbol:rplM species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 PDB:2RDO PDBsum:2RDO eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066 PDB:3J0T PDB:3J0W
PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ
PDB:2Z4L PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D
PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B EMBL:X02130
PIR:A02787 RefSeq:NP_417698.1 RefSeq:YP_491415.1 PDB:3BBX
PDBsum:3BBX ProteinModelPortal:P0AA10 SMR:P0AA10 DIP:DIP-47837N
IntAct:P0AA10 MINT:MINT-1269598 PaxDb:P0AA10 PRIDE:P0AA10
EnsemblBacteria:EBESCT00000001772 EnsemblBacteria:EBESCT00000018148
GeneID:12932920 GeneID:947828 KEGG:ecj:Y75_p3151 KEGG:eco:b3231
PATRIC:32121888 EchoBASE:EB0867 EcoGene:EG10874
BioCyc:EcoCyc:EG10874-MONOMER BioCyc:ECOL316407:JW3200-MONOMER
EvolutionaryTrace:P0AA10 Genevestigator:P0AA10 Uniprot:P0AA10
Length = 142
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVL 57
>TIGR_CMR|CPS_4443 [details] [associations]
symbol:CPS_4443 "ribosomal protein L13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_271091.1 HSSP:P0AA10 ProteinModelPortal:Q47VT1 SMR:Q47VT1
STRING:Q47VT1 GeneID:3518471 KEGG:cps:CPS_4443 PATRIC:21471723
BioCyc:CPSY167879:GI48-4452-MONOMER Uniprot:Q47VT1
Length = 142
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ W++VDA DK LGR+A+ IA +RGK+ A YTP VD G Y++V+
Sbjct: 13 REWFLVDAEDKTLGRIATEIATRLRGKHKAEYTPHVDTGDYIVVI 57
>TIGR_CMR|GSU_2876 [details] [associations]
symbol:GSU_2876 "ribosomal protein L13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:NP_953918.1 ProteinModelPortal:Q748X4 SMR:Q748X4
GeneID:2688685 KEGG:gsu:GSU2876 PATRIC:22028613
HOGENOM:HOG000225288 BioCyc:GSUL243231:GH27-2865-MONOMER
Uniprot:Q748X4
Length = 143
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 97 KAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
K A + WY+VDA +K+LGR+A+ IA +RGK YTPSVD G +V+VV
Sbjct: 5 KVAKKEEVTRDWYLVDADNKVLGRMATEIANILRGKKKPIYTPSVDTGDFVVVV 58
>TIGR_CMR|BA_0143 [details] [associations]
symbol:BA_0143 "ribosomal protein L13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286
KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:NP_842710.1 RefSeq:YP_016748.1 RefSeq:YP_026429.1
ProteinModelPortal:Q81VP9 SMR:Q81VP9 DNASU:1086446
EnsemblBacteria:EBBACT00000011142 EnsemblBacteria:EBBACT00000017416
EnsemblBacteria:EBBACT00000024437 GeneID:1086446 GeneID:2819438
GeneID:2851608 KEGG:ban:BA_0143 KEGG:bar:GBAA_0143 KEGG:bat:BAS0143
OMA:MLPKTRL BioCyc:BANT260799:GJAJ-154-MONOMER
BioCyc:BANT261594:GJ7F-156-MONOMER Uniprot:Q81VP9
Length = 145
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WYVVDA + LGRLAS +A +RGKN T+TP VD G +VI++
Sbjct: 13 ERKWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIII 58
>TIGR_CMR|SO_3940 [details] [associations]
symbol:SO_3940 "ribosomal protein L13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10
RefSeq:NP_719471.1 ProteinModelPortal:Q8EAG2 SMR:Q8EAG2
GeneID:1171578 KEGG:son:SO_3940 PATRIC:23527558 Uniprot:Q8EAG2
Length = 142
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ W+VVDA K LGR+A+ IA+ +RGK+ YTP VD G Y+IV+
Sbjct: 13 RDWFVVDADGKTLGRIATEIALRLRGKHKPEYTPHVDTGDYIIVI 57
>TIGR_CMR|SPO_1691 [details] [associations]
symbol:SPO_1691 "ribosomal protein L13" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_166930.1 ProteinModelPortal:Q5LSS5
SMR:Q5LSS5 GeneID:3193556 KEGG:sil:SPO1691 PATRIC:23376707
Uniprot:Q5LSS5
Length = 152
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
DK W ++DA +LGRLAS +A+ +RGK+ A++TP +DMG VIV+
Sbjct: 12 DKKWILIDAEGVVLGRLASIVAMRLRGKHKASFTPHMDMGDNVIVI 57
>TIGR_CMR|NSE_0840 [details] [associations]
symbol:NSE_0840 "ribosomal protein L13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_506708.1 ProteinModelPortal:Q2GCT8 STRING:Q2GCT8
GeneID:3932168 KEGG:nse:NSE_0840 PATRIC:22681675
BioCyc:NSEN222891:GHFU-845-MONOMER Uniprot:Q2GCT8
Length = 152
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+K W VVDATD ++GRLA+ ++ +RGK TYTP +D G VIVV
Sbjct: 12 EKQWIVVDATDAVVGRLAAFVSTILRGKTKPTYTPHMDCGDNVIVV 57
>TIGR_CMR|APH_1108 [details] [associations]
symbol:APH_1108 "ribosomal protein L13" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
RefSeq:YP_505656.1 ProteinModelPortal:Q2GIZ5 SMR:Q2GIZ5
STRING:Q2GIZ5 GeneID:3930273 KEGG:aph:APH_1108 PATRIC:20950974
OMA:YTPHMDC ProtClustDB:PRK09216
BioCyc:APHA212042:GHPM-1114-MONOMER HAMAP:MF_01366_B Uniprot:Q2GIZ5
Length = 158
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
DK W ++DA+D ++GRLA+ IA +RGK+ YTP +D G V+VV
Sbjct: 12 DKRWVLIDASDMVVGRLAAYIATILRGKHKPEYTPHMDCGDNVVVV 57
>TIGR_CMR|CHY_2274 [details] [associations]
symbol:CHY_2274 "ribosomal protein L13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_361083.1 ProteinModelPortal:Q3A9V1 SMR:Q3A9V1
STRING:Q3A9V1 GeneID:3726760 KEGG:chy:CHY_2274 PATRIC:21277619
BioCyc:CHYD246194:GJCN-2273-MONOMER Uniprot:Q3A9V1
Length = 143
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WYV+DA K LGR+AS A +RGK+ +TP VD G +VI++
Sbjct: 13 ERKWYVIDAAGKPLGRVASEAAKLLRGKHKPEFTPHVDTGDFVIII 58
>TIGR_CMR|CJE_1653 [details] [associations]
symbol:CJE_1653 "ribosomal protein L13" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:E81294
RefSeq:YP_179634.1 ProteinModelPortal:Q5HSV1 STRING:Q5HSV1
GeneID:3232281 KEGG:cjr:CJE1653 PATRIC:20045101
BioCyc:CJEJ195099:GJC0-1683-MONOMER Uniprot:Q5HSV1
Length = 141
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ W V+DA K GRL + +A +RGKN +TP+VD G YVI++
Sbjct: 12 REWIVLDAEGKRFGRLLTEVATILRGKNKPCFTPNVDCGDYVIII 56
>ASPGD|ASPL0000005099 [details] [associations]
symbol:AN9469 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 GO:GO:0006412 EMBL:BN001301 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 OMA:YTPHMDC
HOGENOM:HOG000225288 EMBL:AACD01000194 RefSeq:XP_868851.1
ProteinModelPortal:Q5AQG1 STRING:Q5AQG1
EnsemblFungi:CADANIAT00007061 GeneID:3684066 KEGG:ani:AN9469.2
Uniprot:Q5AQG1
Length = 166
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 106 KTWYVVDA-TD-KILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLH 154
+ W++VD +D + LGRLAS+IA+ + GKN Y PS D G YV+ V G H
Sbjct: 14 RAWHLVDVGSDGRSLGRLASSIALILMGKNKPIYDPSTDCGDYVVAV-GCH 63
>CGD|CAL0004144 [details] [associations]
symbol:orf19.3348 species:5476 "Candida albicans" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 CGD:CAL0004144 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000045 EMBL:AACQ01000042
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
RefSeq:XP_718171.1 RefSeq:XP_718438.1 ProteinModelPortal:Q5A8Y6
STRING:Q5A8Y6 GeneID:3639931 GeneID:3640222 KEGG:cal:CaO19.10856
KEGG:cal:CaO19.3348 Uniprot:Q5A8Y6
Length = 176
Score = 112 (44.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 106 KTWYVVD--ATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLH 154
+ W+ VD A ++ LGRLAS+IAI + GK+ TYTP+ D G YV+V H
Sbjct: 14 RVWHHVDVAADNRSLGRLASSIAITLMGKHKPTYTPNRDHGDYVVVTNCAH 64
>TIGR_CMR|DET_0505 [details] [associations]
symbol:DET_0505 "ribosomal protein L13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_181249.1 ProteinModelPortal:Q3Z950
STRING:Q3Z950 GeneID:3230210 KEGG:det:DET0505 PATRIC:21608079
BioCyc:DETH243164:GJNF-505-MONOMER Uniprot:Q3Z950
Length = 143
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 19/59 (32%), Positives = 39/59 (66%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
NT+ KA+D + + W+V+DA+ ++LG +A+ A ++ GK+ + ++D G YV+++
Sbjct: 2 NTYTVKASDIK---RDWHVIDASGRVLGEVAAEAAKYLMGKHKPMFCRNLDCGDYVVII 57
>TIGR_CMR|ECH_1019 [details] [associations]
symbol:ECH_1019 "ribosomal protein L13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_507805.1 ProteinModelPortal:Q2GFH8 STRING:Q2GFH8
GeneID:3927274 KEGG:ech:ECH_1019 PATRIC:20577408
BioCyc:ECHA205920:GJNR-1022-MONOMER Uniprot:Q2GFH8
Length = 156
Score = 105 (42.0 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
K W V+DA ++GRLA+ +A +RGK+ YTP +D G VI++
Sbjct: 15 KRWVVIDADGVVVGRLAAFVANILRGKDKPEYTPHMDCGDNVIII 59
>SGD|S000005676 [details] [associations]
symbol:MRPL23 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IDA;IPI]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA;IPI] [GO:0032543 "mitochondrial translation"
evidence=IC] [GO:0005840 "ribosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
SGD:S000005676 EMBL:BK006948 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 EMBL:U55020 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC HOGENOM:HOG000225288 GeneTree:ENSGT00390000001515
OrthoDB:EOG46T69R EMBL:Z75058 EMBL:AY558133 PIR:S67038
RefSeq:NP_014793.1 ProteinModelPortal:Q12487 SMR:Q12487
DIP:DIP-5385N IntAct:Q12487 MINT:MINT-502479 STRING:Q12487
PaxDb:Q12487 PeptideAtlas:Q12487 EnsemblFungi:YOR150W GeneID:854321
KEGG:sce:YOR150W CYGD:YOR150w NextBio:976357 Genevestigator:Q12487
GermOnline:YOR150W Uniprot:Q12487
Length = 163
Score = 99 (39.9 bits), Expect = 0.00042, P = 0.00042
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 106 KTWYVVD-ATDK-ILGRLASTIAIHIRGKNLATYTPSVDMGAYVIV 149
+ W+ VD A DK LGRLAS IAI + G++ Y PS D G YV+V
Sbjct: 14 RLWHHVDVARDKRTLGRLASAIAITLIGRHKPVYHPSQDCGDYVVV 59
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.132 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 167 156 0.00073 106 3 11 22 0.46 31
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 608 (65 KB)
Total size of DFA: 173 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.87u 0.16s 15.03t Elapsed: 00:00:01
Total cpu time: 14.87u 0.16s 15.03t Elapsed: 00:00:01
Start: Fri May 10 07:31:58 2013 End: Fri May 10 07:31:59 2013