BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031004
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYL9|RK13_ARATH 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana
GN=RPL13 PE=1 SV=1
Length = 241
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 9/122 (7%)
Query: 38 TPFLGFSVASAKSTSP-----LNTKRSFKVRCCQN----LSLVPDNQRWMFEQSEVNGPD 88
+PFLGFS+ + S N+KR +V+C SLVP NQRWMF++ E NGPD
Sbjct: 26 SPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPD 85
Query: 89 IWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVI 148
IWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VI
Sbjct: 86 IWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVI 145
Query: 149 VV 150
VV
Sbjct: 146 VV 147
>sp|P12629|RK13_SPIOL 50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea
GN=RPL13 PE=1 SV=1
Length = 250
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 103/166 (62%), Gaps = 26/166 (15%)
Query: 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGF---------SVASAKST 51
MAT+ + + F S Q+ S GT + TP L F +V++ KST
Sbjct: 1 MATMACASSLTFPSAQTQKSF-------FGTNVKQ--TPVLSFPRPTVAAAVAVSARKST 51
Query: 52 SPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHS 104
S +TK R K + ++ VP +QRWMF E GPDIWN TWYPK+ADH +
Sbjct: 52 S-ASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPT 110
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVV
Sbjct: 111 DKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVV 156
>sp|Q6KI61|RL13_MYCMO 50S ribosomal protein L13 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rplM PE=3 SV=1
Length = 144
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 101 HRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
H+ +DK W+VVDA ++LGRLAS +A ++RGKN T+TP+VDMG +IV+
Sbjct: 9 HKETDKKWFVVDAEGQVLGRLASVVASYLRGKNKPTFTPNVDMGDNIIVI 58
>sp|Q3MF94|RL13_ANAVT 50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rplM PE=3 SV=1
Length = 151
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVV
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 58
>sp|Q8YPK6|RL13_NOSS1 50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rplM PE=3 SV=1
Length = 151
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVV
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 58
>sp|C5C020|RL13_BEUC1 50S ribosomal protein L13 OS=Beutenbergia cavernae (strain ATCC
BAA-8 / DSM 12333 / NBRC 16432) GN=rplM PE=3 SV=1
Length = 147
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PK +D +++TWYV+DATD +LGRLAS +A +RGK+ AT+ P VD G +VIVV
Sbjct: 2 RTFTPKPSD---TERTWYVIDATDVVLGRLASQVAKLLRGKHKATFAPHVDTGDFVIVV 57
>sp|B4RXK9|RL13_ALTMD 50S ribosomal protein L13 OS=Alteromonas macleodii (strain DSM
17117 / Deep ecotype) GN=rplM PE=3 SV=1
Length = 142
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDATDK LGRLAS IA+ +RGK+ YTP VD G Y+IV+
Sbjct: 13 RDWYVVDATDKTLGRLASEIALRLRGKHKPEYTPHVDTGDYIIVI 57
>sp|Q220T2|RL13_RHOFD 50S ribosomal protein L13 OS=Rhodoferax ferrireducens (strain DSM
15236 / ATCC BAA-621 / T118) GN=rplM PE=3 SV=1
Length = 143
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ KAAD H W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G +++++
Sbjct: 3 KTFSAKAADVVHE---WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDFIVII 58
>sp|B1Y3K7|RL13_LEPCP 50S ribosomal protein L13 OS=Leptothrix cholodnii (strain ATCC
51168 / LMG 8142 / SP-6) GN=rplM PE=3 SV=1
Length = 142
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
NT+ K A+ H W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G +++VV
Sbjct: 2 NTFSAKPAEVVHE---WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDFIVVV 57
>sp|C5CC33|RL13_MICLC 50S ribosomal protein L13 OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rplM PE=3 SV=1
Length = 147
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PK D +D+ W+++DATD +LGRLAS A +RGK+ T+ P +DMG YVI+V
Sbjct: 2 RTYSPKPGD---ADRQWHIIDATDVVLGRLASHTATLLRGKHKPTFAPHMDMGDYVIIV 57
>sp|A0JZ27|RL13_ARTS2 50S ribosomal protein L13 OS=Arthrobacter sp. (strain FB24) GN=rplM
PE=3 SV=1
Length = 147
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PK D ++ W+V+DATD +LGRLAS AI +RGK+ AT+ P +DMG +VI++
Sbjct: 2 RTYTPKPGD---INRQWHVIDATDVVLGRLASQTAILLRGKHKATFAPHMDMGDFVIII 57
>sp|B1XJI1|RL13_SYNP2 50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rplM PE=3 SV=1
Length = 151
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
D+ WYVVDA D+ LGRLAS +A +RGKN A YTP +D G +VIVV
Sbjct: 13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVV 58
>sp|A1VJJ3|RL13_POLNA 50S ribosomal protein L13 OS=Polaromonas naphthalenivorans (strain
CJ2) GN=rplM PE=3 SV=1
Length = 147
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ K AD H W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G +++++
Sbjct: 2 KTFSAKPADVTHE---WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDFIVII 57
>sp|Q6H001|RL13_FREDI 50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3
SV=2
Length = 151
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WY+VDATD+ LGRLAS IA+ +RGK A YTP +D G +VIV+
Sbjct: 13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVI 58
>sp|A9C179|RL13_DELAS 50S ribosomal protein L13 OS=Delftia acidovorans (strain DSM 14801
/ SPH-1) GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+T+ K A+ +H W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G +++++
Sbjct: 2 STFSAKPAEVQHE---WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDFIVII 57
>sp|B7KI14|RL13_CYAP7 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424)
GN=rplM PE=3 SV=1
Length = 151
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 35/46 (76%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
DK WYV+DA + LGRLAS IA+ +RGKN TYTP +D G +VIV+
Sbjct: 13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVI 58
>sp|C1DDC6|RL13_LARHH 50S ribosomal protein L13 OS=Laribacter hongkongensis (strain
HLHK9) GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ W+VVDATDK+LGRLA+ IA +RGK+ YTP VD G Y++VV
Sbjct: 13 RDWFVVDATDKVLGRLAAEIARRLRGKHKPEYTPHVDTGDYIVVV 57
>sp|A1W3P7|RL13_ACISJ 50S ribosomal protein L13 OS=Acidovorax sp. (strain JS42) GN=rplM
PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 36/43 (83%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G Y++++
Sbjct: 15 WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDYIVII 57
>sp|B9MD52|RL13_ACIET 50S ribosomal protein L13 OS=Acidovorax ebreus (strain TPSY)
GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 36/43 (83%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G Y++++
Sbjct: 15 WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDYIVII 57
>sp|Q8G424|RL13_BIFLO 50S ribosomal protein L13 OS=Bifidobacterium longum (strain NCC
2705) GN=rplM PE=3 SV=1
Length = 149
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PK AD H WYV+DATD +LGRLA+ AI +RGKN TY P D G +VI++
Sbjct: 3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIII 57
>sp|B3DPZ9|RL13_BIFLD 50S ribosomal protein L13 OS=Bifidobacterium longum (strain DJO10A)
GN=rplM PE=3 SV=1
Length = 149
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PK AD H WYV+DATD +LGRLA+ AI +RGKN TY P D G +VI++
Sbjct: 3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIII 57
>sp|Q2S9X2|RL13_HAHCH 50S ribosomal protein L13 OS=Hahella chejuensis (strain KCTC 2396)
GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYV+DATDK LGRL++ IA +RGK+ A YTP VD G Y++VV
Sbjct: 13 RDWYVIDATDKTLGRLSTEIARRLRGKHKAEYTPHVDTGDYIVVV 57
>sp|Q1QVF0|RL13_CHRSD 50S ribosomal protein L13 OS=Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDATDK LGRLA+ IA +RGK+ YTP VD G Y++VV
Sbjct: 13 RDWYVVDATDKTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVV 57
>sp|B8D7S6|RL13_BUCAT 50S ribosomal protein L13 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WY VDAT+KILGRLAS ++ H+RGK+ YTP +D G Y+IV+
Sbjct: 13 RHWYYVDATNKILGRLASALSFHLRGKHKTEYTPHLDTGDYIIVI 57
>sp|P57471|RL13_BUCAI 50S ribosomal protein L13 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WY VDAT+KILGRLAS ++ H+RGK+ YTP +D G Y+IV+
Sbjct: 13 RHWYYVDATNKILGRLASALSFHLRGKHKTEYTPHLDTGDYIIVI 57
>sp|B8D9H4|RL13_BUCA5 50S ribosomal protein L13 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=rplM PE=3 SV=1
Length = 142
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WY VDAT+KILGRLAS ++ H+RGK+ YTP +D G Y+IV+
Sbjct: 13 RHWYYVDATNKILGRLASALSFHLRGKHKTEYTPHLDTGDYIIVI 57
>sp|A1T551|RL13_MYCVP 50S ribosomal protein L13 OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=rplM PE=3 SV=1
Length = 147
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PKA D + +TWYV+DATD +LGRLA A +RGK+ T+TP+VD G +VIV+
Sbjct: 3 TYTPKAGD---TTRTWYVIDATDVVLGRLAVEAAKLLRGKHKPTFTPNVDGGDFVIVI 57
>sp|C5CM24|RL13_VARPS 50S ribosomal protein L13 OS=Variovorax paradoxus (strain S110)
GN=rplM PE=3 SV=1
Length = 143
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ K AD H W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G +++++
Sbjct: 3 KTFSAKPADVTHE---WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDFIVII 58
>sp|Q057I8|RL13_BUCCC 50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Cinara
cedri (strain Cc) GN=rplM PE=3 SV=1
Length = 142
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 36/46 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
K WY +DAT+KILGRLAS ++I +RGKN +TP +D+G Y+I++
Sbjct: 12 KKNWYCIDATNKILGRLASQVSIFLRGKNKPEFTPHIDVGDYIIII 57
>sp|Q49ZD6|RL13_STAS1 50S ribosomal protein L13 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplM
PE=3 SV=1
Length = 145
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WYV+DA K LGRL+S +A +RGKN TYTP VD G YVIV+
Sbjct: 13 ERKWYVIDAEGKTLGRLSSEVAAILRGKNKVTYTPHVDTGDYVIVI 58
>sp|A1K971|RL13_AZOSB 50S ribosomal protein L13 OS=Azoarcus sp. (strain BH72) GN=rplM
PE=3 SV=1
Length = 142
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ W+VVD TDK+LGRLA+ +A +RGK+ A YTP VD G Y++VV
Sbjct: 13 RDWFVVDGTDKVLGRLAAEVARRLRGKHKAIYTPHVDTGDYIVVV 57
>sp|Q124N6|RL13_POLSJ 50S ribosomal protein L13 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rplM PE=3 SV=1
Length = 142
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ K AD H W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G +++++
Sbjct: 2 KTFSAKPADVTHE---WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDFIVII 57
>sp|B7GNE8|RL13_BIFLS 50S ribosomal protein L13 OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=rplM PE=3 SV=1
Length = 149
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PK AD H WYV+DATD +LGRLA+ A+ +RGKN TY P D G +VI++
Sbjct: 3 TFTPKPADLTHD---WYVIDATDVVLGRLATQAAVLLRGKNKPTYAPHADSGNHVIII 57
>sp|A0QSP8|RL13_MYCS2 50S ribosomal protein L13 OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=rplM PE=1 SV=1
Length = 147
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 3/58 (5%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ PKA D + ++WYV+DA+D +LGRLAS A +RGK+ T+TP+VD G +VIV+
Sbjct: 3 TYTPKAGD---TTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVI 57
>sp|C4ZI85|RL13_EUBR3 50S ribosomal protein L13 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplM PE=3 SV=1
Length = 142
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 34/46 (73%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
D+ WYVVDA K LGRLAS +A +RGKN A +TP +D G YVIVV
Sbjct: 12 DRKWYVVDAEGKTLGRLASEVAKVLRGKNKAIFTPHIDTGDYVIVV 57
>sp|B0JY35|RL13_MICAN 50S ribosomal protein L13 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplM PE=3 SV=1
Length = 151
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+
Sbjct: 13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVI 58
>sp|C3LS60|RL13_VIBCM 50S ribosomal protein L13 OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVV
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVV 57
>sp|Q9KUF1|RL13_VIBCH 50S ribosomal protein L13 OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVV
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVV 57
>sp|A5F997|RL13_VIBC3 50S ribosomal protein L13 OS=Vibrio cholerae serotype O1 (strain
ATCC 39541 / Ogawa 395 / O395) GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDA K LGRLAS IA +RGK+ A YTP VD G Y+IVV
Sbjct: 13 RDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVV 57
>sp|Q47IC5|RL13_DECAR 50S ribosomal protein L13 OS=Dechloromonas aromatica (strain RCB)
GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIV 149
+ W+VVDATDK+LGRLA+ IA +RGK+ A YTP +D G +V+V
Sbjct: 13 REWFVVDATDKVLGRLATEIARRLRGKHKAIYTPHIDTGDFVVV 56
>sp|A1ATL1|RL13_PELPD 50S ribosomal protein L13 OS=Pelobacter propionicus (strain DSM
2379) GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WY+VDA + +LGRLAS IA +RGKN A YTPSVD G +VIVV
Sbjct: 13 RDWYLVDAQEMVLGRLASQIANILRGKNKAIYTPSVDTGDFVIVV 57
>sp|Q2S6I8|RL13_SALRD 50S ribosomal protein L13 OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=rplM PE=3 SV=2
Length = 148
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 37/46 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ WYVVDAT++++GRLAS IA +RGK+ T+TP VD G YVIVV
Sbjct: 17 ERDWYVVDATNQVVGRLASQIARVLRGKHKPTFTPHVDTGDYVIVV 62
>sp|Q82UK0|RL13_NITEU 50S ribosomal protein L13 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=rplM PE=3 SV=1
Length = 144
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 92 NTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
T+ K + RH W+VVDATDK+LGRLA+ IA +RGK+ YTP VD G Y++V+
Sbjct: 2 KTFSAKPHEVRHE---WFVVDATDKVLGRLAAAIAHRLRGKHKPIYTPHVDTGDYIVVI 57
>sp|B2AH57|RL13_CUPTR 50S ribosomal protein L13 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYV+DATDK+LGR+AS +A +RGK+ +TP VD G Y+I+V
Sbjct: 13 RDWYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDYIIIV 57
>sp|Q0KED9|RL13_CUPNH 50S ribosomal protein L13 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYV+DATDK+LGR+AS +A +RGK+ +TP VD G Y+I+V
Sbjct: 13 RDWYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDYIIIV 57
>sp|Q475T3|RL13_CUPPJ 50S ribosomal protein L13 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rplM PE=3 SV=1
Length = 142
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYV+DATDK+LGR+AS +A +RGK+ +TP VD G Y+I+V
Sbjct: 13 RDWYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDYIIIV 57
>sp|A1TUF6|RL13_ACIAC 50S ribosomal protein L13 OS=Acidovorax citrulli (strain AAC00-1)
GN=rplM PE=3 SV=1
Length = 142
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
W+V+DATDK+LGR+AS +A+ +RGK+ A YTP VD G +++++
Sbjct: 15 WFVIDATDKVLGRVASEVALRLRGKHKAIYTPHVDTGDFIVII 57
>sp|A2BTB2|RL13_PROMS 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
AS9601) GN=rplM PE=3 SV=1
Length = 143
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
++ W++VDA DK LGRLA+ IA +RGKN TYTP +D G +VIVV
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVV 58
>sp|A8AQC1|RL13_CITK8 50S ribosomal protein L13 OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=rplM PE=3 SV=1
Length = 142
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 35/45 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
+ WYVVDAT K LGRLA+ +A+ +RGK+ A YTP VD G Y+IV+
Sbjct: 13 RDWYVVDATGKTLGRLATELALRLRGKHKAEYTPHVDTGDYIIVL 57
>sp|Q0AI00|RL13_NITEC 50S ribosomal protein L13 OS=Nitrosomonas eutropha (strain C91)
GN=rplM PE=3 SV=1
Length = 144
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
W+VVDATDK+LGRLA+ IA +RGK+ YTP VD G Y++V+
Sbjct: 15 WFVVDATDKVLGRLAAAIAHRLRGKHKPIYTPHVDTGDYIVVI 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.129 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,438,219
Number of Sequences: 539616
Number of extensions: 2193032
Number of successful extensions: 10433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 9007
Number of HSP's gapped (non-prelim): 1269
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)