Query 031004
Match_columns 167
No_of_seqs 129 out of 1004
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00159 rpl13 ribosomal prote 100.0 1.6E-32 3.5E-37 217.4 6.5 71 90-167 1-71 (143)
2 PRK09216 rplM 50S ribosomal pr 100.0 1.2E-31 2.6E-36 212.4 6.0 70 91-167 1-70 (144)
3 TIGR01066 rplM_bact ribosomal 100.0 2.9E-30 6.4E-35 203.5 5.7 66 95-167 3-68 (140)
4 COG0102 RplM Ribosomal protein 100.0 5.5E-30 1.2E-34 204.9 6.8 68 91-165 1-68 (148)
5 cd00392 Ribosomal_L13 Ribosoma 100.0 2.1E-29 4.5E-34 192.2 5.5 56 108-167 1-56 (114)
6 PLN00205 ribisomal protein L13 99.9 5.6E-28 1.2E-32 199.6 6.1 60 104-167 13-72 (191)
7 PF00572 Ribosomal_L13: Riboso 99.9 7E-28 1.5E-32 186.7 3.3 56 108-167 1-56 (128)
8 KOG3203 Mitochondrial/chloropl 99.9 3.5E-27 7.5E-32 191.3 4.2 65 99-167 14-78 (165)
9 PRK06394 rpl13p 50S ribosomal 99.5 6.2E-14 1.3E-18 111.6 4.6 40 107-158 3-42 (146)
10 PTZ00068 60S ribosomal protein 98.3 3.5E-07 7.7E-12 76.8 3.3 27 107-133 4-30 (202)
11 TIGR01077 L13_A_E ribosomal pr 97.9 7.9E-06 1.7E-10 65.1 2.5 22 109-130 1-22 (142)
12 KOG3204 60S ribosomal protein 90.8 0.16 3.4E-06 43.3 2.1 30 106-135 5-34 (197)
13 PRK05461 apaG CO2+/MG2+ efflux 63.2 7 0.00015 30.7 2.6 48 57-117 6-61 (127)
14 PF12396 DUF3659: Protein of u 55.2 3.3 7.3E-05 29.3 -0.4 29 105-133 10-38 (64)
15 PRK03759 isopentenyl-diphospha 54.8 11 0.00025 29.7 2.6 28 106-133 6-33 (184)
16 COG2967 ApaG Uncharacterized p 52.1 7.6 0.00016 31.3 1.1 15 103-117 46-60 (126)
17 KOG3974 Predicted sugar kinase 51.6 3.6 7.8E-05 37.2 -0.8 74 60-141 61-165 (306)
18 PRK15393 NUDIX hydrolase YfcD; 38.7 19 0.00041 28.6 1.5 37 107-152 11-47 (180)
19 KOG4850 Uncharacterized conser 37.7 14 0.00029 31.5 0.6 17 73-89 166-182 (190)
20 PF00436 SSB: Single-strand bi 36.3 39 0.00085 23.4 2.7 31 104-150 45-75 (104)
21 cd04496 SSB_OBF SSB_OBF: A sub 35.2 43 0.00094 22.9 2.7 32 104-151 41-72 (100)
22 TIGR00292 thiazole biosynthesi 31.5 14 0.00031 31.0 -0.2 52 106-158 158-214 (254)
23 cd02885 IPP_Isomerase Isopente 30.6 53 0.0012 25.3 2.8 26 107-132 3-28 (165)
24 COG2947 Uncharacterized conser 30.6 15 0.00032 30.6 -0.3 13 72-84 90-102 (156)
25 PLN02399 phospholipid hydroper 28.7 54 0.0012 27.9 2.8 30 22-51 27-58 (236)
26 PF01926 MMR_HSR1: 50S ribosom 27.5 1.3E+02 0.0028 21.1 4.1 26 104-130 80-105 (116)
27 PRK07274 single-stranded DNA-b 26.3 1.2E+02 0.0026 23.3 4.0 29 106-150 46-74 (131)
28 PRK13975 thymidylate kinase; P 26.3 81 0.0018 24.1 3.1 26 107-132 166-191 (196)
29 PF04379 DUF525: Protein of un 26.0 43 0.00094 24.7 1.5 15 103-117 30-44 (90)
30 PLN03044 GTP cyclohydrolase I; 25.7 77 0.0017 26.6 3.1 41 115-165 115-155 (188)
31 COG0629 Ssb Single-stranded DN 24.7 70 0.0015 25.3 2.6 28 107-150 51-78 (167)
32 cd02969 PRX_like1 Peroxiredoxi 24.5 78 0.0017 24.1 2.7 32 106-137 111-160 (171)
33 COG1531 Uncharacterized protei 24.3 40 0.00087 25.1 1.1 20 134-153 8-27 (77)
34 PF06088 TLP-20: Nucleopolyhed 23.6 48 0.001 27.7 1.5 16 139-154 63-78 (169)
35 cd02968 SCO SCO (an acronym fo 23.4 45 0.00097 23.9 1.2 17 104-120 123-139 (142)
36 PF03621 MbtH: MbtH-like prote 23.0 56 0.0012 22.4 1.5 18 141-158 8-25 (54)
37 PF04411 DUF524: Protein of un 22.9 70 0.0015 24.3 2.2 28 84-117 79-106 (154)
38 TIGR00063 folE GTP cyclohydrol 22.5 83 0.0018 26.2 2.7 40 115-164 109-148 (180)
39 PRK06752 single-stranded DNA-b 22.3 85 0.0018 23.2 2.5 21 106-130 46-66 (112)
40 PRK09347 folE GTP cyclohydrola 22.1 88 0.0019 26.2 2.8 40 115-164 117-156 (188)
41 COG1635 THI4 Ribulose 1,5-bisp 22.1 38 0.00082 30.3 0.6 52 106-158 166-220 (262)
42 PRK05853 hypothetical protein; 21.7 91 0.002 25.4 2.7 29 106-150 42-70 (161)
43 COG0302 FolE GTP cyclohydrolas 21.7 1E+02 0.0022 26.6 3.1 41 115-165 123-163 (195)
44 PF11302 DUF3104: Protein of u 21.3 96 0.0021 23.0 2.5 16 140-155 5-20 (75)
45 PF04989 CmcI: Cephalosporin h 21.2 1.1E+02 0.0024 26.1 3.2 32 105-149 110-145 (206)
46 PRK04257 hypothetical protein; 20.6 55 0.0012 23.7 1.1 21 133-153 7-27 (78)
47 PF01473 CW_binding_1: Putativ 20.4 54 0.0012 17.4 0.8 13 104-116 6-18 (19)
48 PRK07772 single-stranded DNA-b 20.4 97 0.0021 25.8 2.7 28 107-150 53-80 (186)
49 PRK06863 single-stranded DNA-b 20.3 1.2E+02 0.0026 24.8 3.2 29 106-150 51-79 (168)
50 COG4091 Predicted homoserine d 20.2 1.3E+02 0.0027 28.8 3.6 36 106-154 101-136 (438)
51 COG3570 StrB Streptomycin 6-ki 20.1 1E+02 0.0022 27.8 2.8 25 106-130 179-224 (274)
No 1
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=99.97 E-value=1.6e-32 Score=217.43 Aligned_cols=71 Identities=41% Similarity=0.690 Sum_probs=68.5
Q ss_pred cceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 90 WNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 90 ~~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
||+||++++++ ++|+||||||+||+|||||++||++|+|||||+|||++||||+||||||++| +|+|++|+
T Consensus 1 ~~~t~~~~~~~---~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv----~~TG~K~~ 71 (143)
T CHL00159 1 MNKTFIPSKDY---KNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKI----KVTGNKTS 71 (143)
T ss_pred CCccccCCchh---cCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccee----EEeCchhh
Confidence 57899999888 9999999999999999999999999999999999999999999999999999 99999985
No 2
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=99.97 E-value=1.2e-31 Score=212.36 Aligned_cols=70 Identities=40% Similarity=0.687 Sum_probs=67.2
Q ss_pred ceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 91 ~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
|+||++++++ .+|+||||||+||+|||||++||++|+|||||+|+|++||||+||||||++| .++|++|+
T Consensus 1 m~t~~~~~~~---~~~~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki----~~tG~k~~ 70 (144)
T PRK09216 1 MKTFSAKPAE---VERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKV----KLTGKKLT 70 (144)
T ss_pred CCcccCChhh---cCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCcee----EEcCchHh
Confidence 4689999888 8999999999999999999999999999999999999999999999999999 99999985
No 3
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=99.96 E-value=2.9e-30 Score=203.50 Aligned_cols=66 Identities=44% Similarity=0.694 Sum_probs=61.5
Q ss_pred ccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 95 YPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 95 ~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
.+++.+ +.|+||||||+||+|||||+.||++|+|||||+|+|++||||+||||||++| .++|++|+
T Consensus 3 ~~~~~~---~~r~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki----~~tG~k~~ 68 (140)
T TIGR01066 3 AKASDD---KKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKV----RLTGKKLE 68 (140)
T ss_pred cCChhh---hcccEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEE----EEeCchhh
Confidence 344455 8899999999999999999999999999999999999999999999999999 99999985
No 4
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.5e-30 Score=204.88 Aligned_cols=68 Identities=43% Similarity=0.757 Sum_probs=65.1
Q ss_pred ceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCC
Q 031004 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQ 165 (167)
Q Consensus 91 ~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~ 165 (167)
|+|++.++++ ..|+||||||+|++|||||+.||++|+|||||+||||+||||+||||||||| +++|++
T Consensus 1 ~~t~~~k~~~---~~r~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv----~iTG~K 68 (148)
T COG0102 1 MKTFTAKPSE---VERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKV----VITGKK 68 (148)
T ss_pred CceeccCccc---ccceEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceee----EEeccc
Confidence 5788899888 9999999999999999999999999999999999999999999999999999 888876
No 5
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=99.96 E-value=2.1e-29 Score=192.23 Aligned_cols=56 Identities=45% Similarity=0.790 Sum_probs=55.1
Q ss_pred EEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 108 W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
||||||+||+|||||++||++|+|||||+|||++||||+||||||++| .++|++|+
T Consensus 1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i----~~tG~k~~ 56 (114)
T cd00392 1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKI----VITGKKWR 56 (114)
T ss_pred CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEE----EEeCchhh
Confidence 999999999999999999999999999999999999999999999999 99999985
No 6
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=99.94 E-value=5.6e-28 Score=199.62 Aligned_cols=60 Identities=33% Similarity=0.511 Sum_probs=58.1
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
..|+||||||+||+|||||++||++|+|||||+|+|++||||+||||||++| .++|++|+
T Consensus 13 ~~r~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI----~lTG~K~~ 72 (191)
T PLN00205 13 EGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDI----SVTGRKLT 72 (191)
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEE----EEeCChhh
Confidence 5789999999999999999999999999999999999999999999999999 99999984
No 7
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=99.94 E-value=7e-28 Score=186.71 Aligned_cols=56 Identities=46% Similarity=0.811 Sum_probs=54.5
Q ss_pred EEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 108 W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
||||||+||+|||||+.||++|+|||||+|||++|+||+||||||++| +++|++|+
T Consensus 1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i----~~tG~k~~ 56 (128)
T PF00572_consen 1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKI----VLTGKKWR 56 (128)
T ss_dssp EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGB----EESSHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeee----EecCCeec
Confidence 999999999999999999999999999999999999999999999999 99998873
No 8
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.5e-27 Score=191.31 Aligned_cols=65 Identities=37% Similarity=0.577 Sum_probs=61.7
Q ss_pred CCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 99 ADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 99 ~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
..+.++.|.||+|||++|+|||||++||.+|+|||||+|||+.||||+|||+||++| +|+|++|+
T Consensus 14 ~~~~afaRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~I----a~sG~K~~ 78 (165)
T KOG3203|consen 14 NQWLAFARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKI----AFSGKKWE 78 (165)
T ss_pred hHHHHHhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhh----eeccchhh
Confidence 445668899999999999999999999999999999999999999999999999999 99999995
No 9
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=99.45 E-value=6.2e-14 Score=111.63 Aligned_cols=40 Identities=38% Similarity=0.466 Sum_probs=36.4
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccc
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSC 158 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~ 158 (167)
+-|||||+||+|||||++||++|+| ||+||||||++|.-+
T Consensus 3 ~~~viDA~~~vlGRLAs~IA~~L~~------------Gd~VVViNa~kv~~t 42 (146)
T PRK06394 3 AMVVIDAEGQILGRLASYVAKRLLE------------GEEVVIVNAEKAVIT 42 (146)
T ss_pred ccEEEECCCCchHHHHHHHHHHHhC------------CCEEEEEechheEec
Confidence 3579999999999999999999994 999999999999644
No 10
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=98.33 E-value=3.5e-07 Score=76.80 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.8
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcCC
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGKN 133 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GKh 133 (167)
+|+||||+|++||||||.||+.|+.-+
T Consensus 4 ~w~vIDA~g~vLGRLAS~VAk~Ll~Gd 30 (202)
T PTZ00068 4 KVIVIDCKGHLLGRLASVVAKELLLGQ 30 (202)
T ss_pred ceEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 799999999999999999999999433
No 11
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=97.87 E-value=7.9e-06 Score=65.11 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=21.0
Q ss_pred EEEeCCCCchhhHHHHHHHHHh
Q 031004 109 YVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 109 ~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
+||||+||+|||||++||++|+
T Consensus 1 ivIDA~~~vlGRLAs~IA~~L~ 22 (142)
T TIGR01077 1 TVIDGSGHILGRLASVVAKQLL 22 (142)
T ss_pred CEEeCCCCchHHHHHHHHHHHh
Confidence 4899999999999999999998
No 12
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]
Probab=90.84 E-value=0.16 Score=43.32 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.8
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCC
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLA 135 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP 135 (167)
..-.+||+.|+++||||+.+|+.|+..-|.
T Consensus 5 ~~~~vidg~~hllGrlAa~vaK~ll~g~kv 34 (197)
T KOG3204|consen 5 VKLVVIDGRGHLLGRLAAIVAKQLLLGRKV 34 (197)
T ss_pred EEEeeccchhhhhhhHHHHHHHHHhcCCeE
Confidence 356799999999999999999999966544
No 13
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=63.15 E-value=7 Score=30.73 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=28.5
Q ss_pred ccceEEEecccccccc-----CCcchhhh---hhhhcCCcccceeeccCCCCcccccceEEEEeCCCCc
Q 031004 57 KRSFKVRCCQNLSLVP-----DNQRWMFE---QSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKI 117 (167)
Q Consensus 57 ~~~~~V~C~~~~~~Vp-----~d~R~m~~---~~e~~gP~i~~kT~~~k~~d~~~~~r~W~vIDA~gq~ 117 (167)
..+++|++.- .++| ++.||+|. .||-.|+. ......|.|.|.|++|++
T Consensus 6 t~gI~V~V~~--~y~~e~S~p~~~~y~f~Y~ItI~N~~~~-----------~vQL~~R~W~I~d~~g~~ 61 (127)
T PRK05461 6 TYGIEVSVQP--RYLEEQSDPEEGRYVFAYTITIENLGRV-----------PVQLLSRHWLITDANGRV 61 (127)
T ss_pred cCCEEEEEEE--EECcccCCCcCCEEEEEEEEEEEECCCC-----------CEEEEeeeEEEEECCCCE
Confidence 3567777765 4555 45566553 33333322 122367999999999873
No 14
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=55.24 E-value=3.3 Score=29.29 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=24.8
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHhcCC
Q 031004 105 DKTWYVVDATDKILGRLASTIAIHIRGKN 133 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGRLAS~IA~~L~GKh 133 (167)
.+.=.|+|..|+++|||..--++.|.|+-
T Consensus 10 nk~G~V~d~~G~~vG~vveGd~k~L~G~~ 38 (64)
T PF12396_consen 10 NKDGNVVDDDGNVVGRVVEGDPKKLVGKK 38 (64)
T ss_pred CCCCeEECCCCCEEEEEecCCHHHhcCCc
Confidence 33446999999999999999999999974
No 15
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=54.82 E-value=11 Score=29.71 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCC
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKN 133 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKh 133 (167)
..|.++|++|+.+|+.....+....|..
T Consensus 6 E~~~~vd~~~~~~g~~~r~~~~~~~~~~ 33 (184)
T PRK03759 6 ELVVLLDEQGVPTGTAEKAAAHTADTPL 33 (184)
T ss_pred eeEEEECCCCCCcccccHHHHHhcCCCe
Confidence 3799999999999998888886555653
No 16
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=52.10 E-value=7.6 Score=31.32 Aligned_cols=15 Identities=13% Similarity=0.583 Sum_probs=13.1
Q ss_pred cccceEEEEeCCCCc
Q 031004 103 HSDKTWYVVDATDKI 117 (167)
Q Consensus 103 ~~~r~W~vIDA~gq~ 117 (167)
...|.|+|-|+.|++
T Consensus 46 LlsR~W~ITd~~g~v 60 (126)
T COG2967 46 LLSRYWLITDGNGRV 60 (126)
T ss_pred eeeeEEEEecCCCcE
Confidence 477999999999985
No 17
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=51.62 E-value=3.6 Score=37.22 Aligned_cols=74 Identities=23% Similarity=0.167 Sum_probs=49.2
Q ss_pred eEEEeccccccc-----c-------CCcchhhhhhhh-------------cCCcccceee------ccCCCCcccccceE
Q 031004 60 FKVRCCQNLSLV-----P-------DNQRWMFEQSEV-------------NGPDIWNNTW------YPKAADHRHSDKTW 108 (167)
Q Consensus 60 ~~V~C~~~~~~V-----p-------~d~R~m~~~~e~-------------~gP~i~~kT~------~~k~~d~~~~~r~W 108 (167)
.-|=|+.+++.| | +++-|--+.+|+ +|.|.++-.. |.+..+ .=
T Consensus 61 ~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~~av~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~d------vP 134 (306)
T KOG3974|consen 61 SHIFCEPEAAVVIKSYSPDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKD------VP 134 (306)
T ss_pred eeeeechhHHHHHhhcCCceeecccccCCchHhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCC------Cc
Confidence 357788874433 3 666675555555 4555554322 333344 77
Q ss_pred EEEeCCCCchhhHHHHHHHHHhcCCCCccCCCC
Q 031004 109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSV 141 (167)
Q Consensus 109 ~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~ 141 (167)
+||||+|-- -++....+.+.|-+|.+.|||+
T Consensus 135 ~VIDaDGL~--Lv~q~~e~l~~~~~~viLTPNv 165 (306)
T KOG3974|consen 135 LVIDADGLW--LVEQLPERLIGGYPKVILTPNV 165 (306)
T ss_pred EEEcCCceE--ehhhchhhhhccCceeeeCCcH
Confidence 999999954 3566677799999999999985
No 18
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=38.69 E-value=19 Score=28.58 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=25.9
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcC
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCG 152 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA 152 (167)
-|.|+|..|+++|+.....+.. .|.. + .+-.|+|+|.
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~-~~~~----h----~~~~v~v~~~ 47 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRA-QCLR----H----RATYIVVHDG 47 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhh-CCCc----e----EEEEEEEECC
Confidence 6999999999999996555553 2321 1 3557777775
No 19
>KOG4850 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=14 Score=31.51 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=15.2
Q ss_pred CCcchhhhhhhhcCCcc
Q 031004 73 DNQRWMFEQSEVNGPDI 89 (167)
Q Consensus 73 ~d~R~m~~~~e~~gP~i 89 (167)
.|-.||||+||.-||+.
T Consensus 166 ~nRK~~YE~Ie~~G~~~ 182 (190)
T KOG4850|consen 166 QNRKEMYEVIEAPGPVV 182 (190)
T ss_pred cchHhHhhheecCCCce
Confidence 78889999999999954
No 20
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=36.32 E-value=39 Score=23.41 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=21.4
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
....||=+-+- |++|..++.+|. .||.|.|.
T Consensus 45 ~~~~~~~v~~~----g~~A~~~~~~l~------------kG~~V~V~ 75 (104)
T PF00436_consen 45 EKTDWINVVAW----GKLAENVAEYLK------------KGDRVYVE 75 (104)
T ss_dssp EEEEEEEEEEE----HHHHHHHHHH--------------TT-EEEEE
T ss_pred cceEEEEEEee----eecccccceEEc------------CCCEEEEE
Confidence 44567777664 789999999988 79988775
No 21
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=35.21 E-value=43 Score=22.86 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEc
Q 031004 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVC 151 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVIN 151 (167)
....|+-+-+-| .+|..+++.|+ .||.|+|.=
T Consensus 41 ~~~~~~~v~~~g----~~a~~~~~~~~------------kG~~V~v~G 72 (100)
T cd04496 41 EETDWIRVVAFG----KLAENAAKYLK------------KGDLVYVEG 72 (100)
T ss_pred cccEEEEEEEEh----HHHHHHHHHhC------------CCCEEEEEE
Confidence 345787776654 59999999888 799988853
No 22
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=31.52 E-value=14 Score=31.04 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=35.6
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCC-cc---CC-CCCCCCEEEEEcCcccccc
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLA-TY---TP-SVDMGAYVIVVCGLHAYSC 158 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP-~Y---tP-~~D~GD~VVVINA~kI~~~ 158 (167)
+--+||||+|.. ++++..+++++...... .| .| .++.|+-.||-|..+|+-.
T Consensus 158 ~Ak~VVdATG~~-a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g 214 (254)
T TIGR00292 158 RSRVVVDATGHD-AEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPN 214 (254)
T ss_pred EcCEEEEeecCC-chHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCC
Confidence 345799999987 79999999997644332 12 11 2466777788888887543
No 23
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=30.63 E-value=53 Score=25.26 Aligned_cols=26 Identities=19% Similarity=0.058 Sum_probs=20.5
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcC
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGK 132 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GK 132 (167)
.|-|+|.+|+++|+-....+....+.
T Consensus 3 ~~~~~d~~~~~~g~~~r~~~~~~~~~ 28 (165)
T cd02885 3 LVILVDEDDNPIGTAEKLEAHLKGTL 28 (165)
T ss_pred EEEEECCCCCCccccCHHHHhhcCCc
Confidence 68899999999998766666555555
No 24
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=30.57 E-value=15 Score=30.62 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=10.9
Q ss_pred cCCcchhhhhhhh
Q 031004 72 PDNQRWMFEQSEV 84 (167)
Q Consensus 72 p~d~R~m~~~~e~ 84 (167)
||+|||+|+++++
T Consensus 90 ~e~pRW~~Vdv~~ 102 (156)
T COG2947 90 PEDPRWYCVDVRF 102 (156)
T ss_pred cCCCCeeEEeeHH
Confidence 3899999999873
No 25
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=28.69 E-value=54 Score=27.94 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred CCccccccccccccccccce--eecccccCCC
Q 031004 22 SSFKTLNTGTTISSSTTPFL--GFSVASAKST 51 (167)
Q Consensus 22 ~~f~~~~~~~~~s~~~~~~~--g~~~~~~~~~ 51 (167)
++|.--.++.++-+++++|+ ||++..+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (236)
T PLN02399 27 MAFLVPSLKSSTGISKSAFLSNGFSLKSPNSP 58 (236)
T ss_pred cccccceeeeccccccchhhccccccccCCCc
Confidence 44433345577777889988 8888776544
No 26
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=27.54 E-value=1.3e+02 Score=21.06 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=17.2
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHh
Q 031004 104 SDKTWYVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
..--+|++|++. .+-.-...+...|+
T Consensus 80 ~d~ii~vv~~~~-~~~~~~~~~~~~l~ 105 (116)
T PF01926_consen 80 SDLIIYVVDASN-PITEDDKNILRELK 105 (116)
T ss_dssp ESEEEEEEETTS-HSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHh
Confidence 455899999877 33344556666675
No 27
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=26.33 E-value=1.2e+02 Score=23.32 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
..||-|-+ -|++|..++.+|. -||.|.|-
T Consensus 46 t~w~~v~~----fg~~Ae~v~~~l~------------KG~~V~V~ 74 (131)
T PRK07274 46 ADFINVVL----WGKLAETLASYAS------------KGSLISID 74 (131)
T ss_pred EEEEEEEE----ehHHHHHHHHHcC------------CCCEEEEE
Confidence 46888765 4789999999987 57776653
No 28
>PRK13975 thymidylate kinase; Provisional
Probab=26.30 E-value=81 Score=24.13 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.7
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcC
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGK 132 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GK 132 (167)
.|++||++++.+-.++.+|...|..|
T Consensus 166 ~~~~Id~~~~~~eev~~~I~~~i~~~ 191 (196)
T PRK13975 166 GFIVIDTTNKSIEEVFNEILNKIKDK 191 (196)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 59999999999999999999888643
No 29
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=26.00 E-value=43 Score=24.75 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=11.7
Q ss_pred cccceEEEEeCCCCc
Q 031004 103 HSDKTWYVVDATDKI 117 (167)
Q Consensus 103 ~~~r~W~vIDA~gq~ 117 (167)
...|.|.|.|++|+.
T Consensus 30 L~sR~W~I~d~~g~~ 44 (90)
T PF04379_consen 30 LLSRHWIITDADGHV 44 (90)
T ss_dssp EEEEEEEEEETTS-E
T ss_pred EEccEEEEEeCCCCE
Confidence 367999999999853
No 30
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=25.65 E-value=77 Score=26.60 Aligned_cols=41 Identities=22% Similarity=0.159 Sum_probs=30.4
Q ss_pred CCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCC
Q 031004 115 DKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQ 165 (167)
Q Consensus 115 gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~ 165 (167)
-|+-=||..+||..|+-.-+ +-+-.|+|.|++. |+.|.|-+
T Consensus 115 lQiQERLT~qIa~~l~~~l~--------p~gVaV~ieA~H~--Cm~mRGv~ 155 (188)
T PLN03044 115 LQTQERLTRQIADAIVESVE--------PLGVMVVVEAAHF--CMVMRGVE 155 (188)
T ss_pred cHHHHHHHHHHHHHHHHhhC--------CCceEEEEEEEEe--eehhhCcc
Confidence 34445889999999985433 4677788999998 88888753
No 31
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair]
Probab=24.66 E-value=70 Score=25.31 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=21.6
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
.||=|- +-|++|..++.+|+ .|+-|+|.
T Consensus 51 ~~~~vv----~wgk~Ae~~~~yl~------------KG~~V~Ve 78 (167)
T COG0629 51 DWIRVV----IWGKLAENAAEYLK------------KGSLVYVE 78 (167)
T ss_pred ceEEEE----EehHHHHHHHHHhc------------CCCEEEEE
Confidence 677664 46789999999998 57777764
No 32
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=24.47 E-value=78 Score=24.05 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=25.2
Q ss_pred ceEEEEeCCCCchhh------------------HHHHHHHHHhcCCCCcc
Q 031004 106 KTWYVVDATDKILGR------------------LASTIAIHIRGKNLATY 137 (167)
Q Consensus 106 r~W~vIDA~gq~LGR------------------LAS~IA~~L~GKhKP~Y 137 (167)
...+|||.+|+++-+ |-..|+..|.|+..+..
T Consensus 111 P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 160 (171)
T cd02969 111 PDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVP 160 (171)
T ss_pred CcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCcc
Confidence 568999999988722 67789999999887754
No 33
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.32 E-value=40 Score=25.09 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=16.6
Q ss_pred CCccCCCCCCCCEEEEEcCc
Q 031004 134 LATYTPSVDMGAYVIVVCGL 153 (167)
Q Consensus 134 KP~YtP~~D~GD~VVVINA~ 153 (167)
|-.|+|.-|.+||||++=.+
T Consensus 8 k~~w~p~~d~~dy~I~~~hR 27 (77)
T COG1531 8 KLKWHPKEDIEDYVIVIIHR 27 (77)
T ss_pred HhhcCcccCcceEEEEEEec
Confidence 44589999999999998654
No 34
>PF06088 TLP-20: Nucleopolyhedrovirus telokin-like protein-20 (TLP20); InterPro: IPR009092 The baculovirus, Autographa californica nuclear polyhedrosis virus (AcMNPV), telokin-like protein (Tlp20) lies in a region of the baculoviral genome that is expressed late in the viral replication cycle, however its function is unknown. Tlp20 was discovered using anti-telokin antibodies, telokin being the C-terminal domain of smooth-muscle myosin light-chain kinase []. Both Tlp20 and telokin display a seven-stranded antiparallel beta-barrel structure, although the 3-dimensional structures of the beta-barrels are different and there is no sequence homology between the two. Tlp20 is structurally similar to dUTPase in its fold and trimeric assembly [].; PDB: 1TUL_A.
Probab=23.55 E-value=48 Score=27.66 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=11.7
Q ss_pred CCCCCCCEEEEEcCcc
Q 031004 139 PSVDMGAYVIVVCGLH 154 (167)
Q Consensus 139 P~~D~GD~VVVINA~k 154 (167)
--+-||||||+.|.-.
T Consensus 63 ~~v~~gdY~V~~N~~~ 78 (169)
T PF06088_consen 63 STVTCGDYVVVYNFVE 78 (169)
T ss_dssp EEEESSSEEEEEE--S
T ss_pred eEEecCCEEEEEEeec
Confidence 4578999999999754
No 35
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.41 E-value=45 Score=23.94 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.1
Q ss_pred ccceEEEEeCCCCchhh
Q 031004 104 SDKTWYVVDATDKILGR 120 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGR 120 (167)
..+.++|||.+|++.++
T Consensus 123 ~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 123 HSAAIYLVDPDGKLVRY 139 (142)
T ss_pred ccceEEEECCCCCEEEe
Confidence 35689999999998765
No 36
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=23.04 E-value=56 Score=22.41 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=10.8
Q ss_pred CCCCCEEEEEcCcccccc
Q 031004 141 VDMGAYVIVVCGLHAYSC 158 (167)
Q Consensus 141 ~D~GD~VVVINA~kI~~~ 158 (167)
.+.|.|.||+|.+.=+|.
T Consensus 8 ~~~~~f~VlvN~e~QySl 25 (54)
T PF03621_consen 8 DEDGTFLVLVNDEGQYSL 25 (54)
T ss_dssp ---S-EEEEEETT-SEEE
T ss_pred CCCCeEEEEEcCCCCeee
Confidence 457889999999986653
No 37
>PF04411 DUF524: Protein of unknown function (DUF524); InterPro: IPR007505 This domain has been identified as a member of the PD-(D/E)XK nuclease superfamily through transitive meta profile searches []. The domain has two additional beta-strands inserted to the core fold after the first core alpha-helix. It has been speculated that it could function as s methylation-dependent restriction [].
Probab=22.87 E-value=70 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=18.9
Q ss_pred hcCCcccceeeccCCCCcccccceEEEEeCCCCc
Q 031004 84 VNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKI 117 (167)
Q Consensus 84 ~~gP~i~~kT~~~k~~d~~~~~r~W~vIDA~gq~ 117 (167)
..=|||...-+.+... ..|+|+||+=++
T Consensus 79 ~~rPDi~L~i~~~~~~------~~~iifDAKYR~ 106 (154)
T PF04411_consen 79 PQRPDIVLEIYKKGGY------GGSIIFDAKYRI 106 (154)
T ss_pred CCCCCEEEEEEECCCc------cEEEEEEeeeec
Confidence 3559998875554322 299999998443
No 38
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=22.46 E-value=83 Score=26.16 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=30.2
Q ss_pred CCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCC
Q 031004 115 DKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPP 164 (167)
Q Consensus 115 gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~ 164 (167)
-|+-=||+.+||..|+-.-+ +-+-.|+|.|++. |+.|.|-
T Consensus 109 lQiQERlT~qIa~~l~~~l~--------p~gV~V~ieA~H~--Cm~mRGv 148 (180)
T TIGR00063 109 PQVQERLTQQIAEALQEILE--------PNGVAVVVEATHM--CMKMRGI 148 (180)
T ss_pred chHHHHHHHHHHHHHHHhhC--------CCCEEEEEEEEEe--eEeeeCe
Confidence 45556899999999985433 4577789999997 8887774
No 39
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=22.27 E-value=85 Score=23.24 Aligned_cols=21 Identities=5% Similarity=-0.065 Sum_probs=16.0
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHh
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
..|+-+-+ -|++|..++.+|.
T Consensus 46 t~~~~v~~----wg~~Ae~~~~~l~ 66 (112)
T PRK06752 46 VDFINCVV----WRKSAENVTEYCT 66 (112)
T ss_pred EEEEEEEE----ehHHHHHHHHhcC
Confidence 36877654 5679999999976
No 40
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=22.11 E-value=88 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=29.5
Q ss_pred CCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCC
Q 031004 115 DKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPP 164 (167)
Q Consensus 115 gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~ 164 (167)
-|+-=||..+||..|+-.-+ +-+--|+|.|+|. |+.+.|.
T Consensus 117 lQiQERlT~qIa~al~~~l~--------p~gV~V~ieA~H~--Cm~~RGv 156 (188)
T PRK09347 117 PQVQERLTAQIADALQEILG--------PRGVAVVIEAEHM--CMTMRGV 156 (188)
T ss_pred chhHHHHHHHHHHHHHHhhC--------CCceEEEEEEEEc--ChhhhCc
Confidence 44555889999998884433 4567788999997 8877774
No 41
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=22.10 E-value=38 Score=30.31 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=37.0
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHH--hcCCCCccCC-CCCCCCEEEEEcCcccccc
Q 031004 106 KTWYVVDATDKILGRLASTIAIHI--RGKNLATYTP-SVDMGAYVIVVCGLHAYSC 158 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L--~GKhKP~YtP-~~D~GD~VVVINA~kI~~~ 158 (167)
|.=++|||+|+- +-+.+.+|+++ .|..-|--.| ..+.|+..||-|..+|+-.
T Consensus 166 ~a~~VvDaTGHd-a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pg 220 (262)
T COG1635 166 RAKAVVDATGHD-AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPG 220 (262)
T ss_pred eEEEEEeCCCCc-hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccccCC
Confidence 344899999985 45556666666 4555555555 4688899999999998654
No 42
>PRK05853 hypothetical protein; Validated
Probab=21.74 E-value=91 Score=25.44 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
-.|+-|- +-|++|..++++|+ -||.|+|.
T Consensus 42 T~wi~V~----~wg~lAe~v~~~L~------------KG~~V~V~ 70 (161)
T PRK05853 42 SLFITVN----CWGRLVTGVGAALG------------KGAPVIVV 70 (161)
T ss_pred ccEEEEE----EEhHHHHHHHHHcC------------CCCEEEEE
Confidence 3576665 45789999999987 68887775
No 43
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=21.66 E-value=1e+02 Score=26.56 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCC
Q 031004 115 DKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQ 165 (167)
Q Consensus 115 gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~ 165 (167)
-|+-=||-.+||..|+.+=+| -+--|||.|++. |..|.|.+
T Consensus 123 ~QvQErlT~qIA~al~~~L~p--------~GVaVvieA~Hm--Cm~mRGv~ 163 (195)
T COG0302 123 LQVQERLTEQIADALQEILKP--------RGVAVVIEAEHM--CMSMRGVR 163 (195)
T ss_pred hHHHHHHHHHHHHHHHHhcCc--------CceEEEEEEEEe--eehhcCcc
Confidence 344457888999999966554 556688999998 88888754
No 44
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.29 E-value=96 Score=22.97 Aligned_cols=16 Identities=38% Similarity=0.258 Sum_probs=13.2
Q ss_pred CCCCCCEEEEEcCccc
Q 031004 140 SVDMGAYVIVVCGLHA 155 (167)
Q Consensus 140 ~~D~GD~VVVINA~kI 155 (167)
++.+||+|||=+-.+.
T Consensus 5 ~Vk~Gd~ViV~~~~~~ 20 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEV 20 (75)
T ss_pred ccCCCCEEEEecCccc
Confidence 5679999999888754
No 45
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=21.16 E-value=1.1e+02 Score=26.08 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=19.2
Q ss_pred cceEEEEe-CC---CCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEE
Q 031004 105 DKTWYVVD-AT---DKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIV 149 (167)
Q Consensus 105 ~r~W~vID-A~---gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVV 149 (167)
.+.|.||| +. ..+++-|.. .+.++. .|||.||
T Consensus 110 ~~~vlVilDs~H~~~hvl~eL~~-y~plv~------------~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVLAELEA-YAPLVS------------PGSYLIV 145 (206)
T ss_dssp -SSEEEEESS----SSHHHHHHH-HHHT--------------TT-EEEE
T ss_pred CCceEEEECCCccHHHHHHHHHH-hCccCC------------CCCEEEE
Confidence 45777776 55 567777765 444444 8999998
No 46
>PRK04257 hypothetical protein; Provisional
Probab=20.60 E-value=55 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=16.8
Q ss_pred CCCccCCCCCCCCEEEEEcCc
Q 031004 133 NLATYTPSVDMGAYVIVVCGL 153 (167)
Q Consensus 133 hKP~YtP~~D~GD~VVVINA~ 153 (167)
||-.|+|..|.+|++|++=-+
T Consensus 7 nrirWdp~~d~~~~~I~y~dR 27 (78)
T PRK04257 7 NKILWHPDYNEEDYYIVILHR 27 (78)
T ss_pred HHhccCccCCcCeEEEEEEec
Confidence 455689999999999987443
No 47
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=20.44 E-value=54 Score=17.43 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=10.1
Q ss_pred ccceEEEEeCCCC
Q 031004 104 SDKTWYVVDATDK 116 (167)
Q Consensus 104 ~~r~W~vIDA~gq 116 (167)
...+||.+|+.|.
T Consensus 6 ~~~~wYy~~~~G~ 18 (19)
T PF01473_consen 6 DNGNWYYFDSDGY 18 (19)
T ss_dssp ETTEEEEETTTSB
T ss_pred ECCEEEEeCCCcc
Confidence 4468999998874
No 48
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=20.40 E-value=97 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=21.2
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
.|+=+- +.|++|..+|.+|. -||.|+|.
T Consensus 53 ~fi~V~----~Wg~~Ae~va~~L~------------KGd~V~V~ 80 (186)
T PRK07772 53 LFLRCS----IWRQAAENVAESLT------------KGMRVIVT 80 (186)
T ss_pred eEEEEE----EecHHHHHHHHhcC------------CCCEEEEE
Confidence 466554 45789999999988 68887775
No 49
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=20.32 E-value=1.2e+02 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
-.||-|. ..|++|..++++|+ .||.|+|.
T Consensus 51 t~w~~Vv----~fgk~AE~v~~~Lk------------KGs~V~Ve 79 (168)
T PRK06863 51 TEWHRIV----FYRRQAEVAGEYLR------------KGSQVYVE 79 (168)
T ss_pred ceEEEEE----EEhHHHHHHHHHCC------------CCCEEEEE
Confidence 3698886 46788999999987 68887774
No 50
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=20.23 E-value=1.3e+02 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=24.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcc
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLH 154 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~k 154 (167)
.--.||||+|.+. ++.+|+.--+ +.|-|||.+|.|-
T Consensus 101 ~IdvIIdATG~p~--vGA~~~l~Ai-----------~h~KHlVMmNVEa 136 (438)
T COG4091 101 LIDVIIDATGVPE--VGAKIALEAI-----------LHGKHLVMMNVEA 136 (438)
T ss_pred cceEEEEcCCCcc--hhhHhHHHHH-----------hcCCeEEEEEeee
Confidence 3568999999875 4455554333 3466799999874
No 51
>COG3570 StrB Streptomycin 6-kinase [Defense mechanisms]
Probab=20.10 E-value=1e+02 Score=27.79 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=19.4
Q ss_pred ceEEEEeCCCC---------------------chhhHHHHHHHHHh
Q 031004 106 KTWYVVDATDK---------------------ILGRLASTIAIHIR 130 (167)
Q Consensus 106 r~W~vIDA~gq---------------------~LGRLAS~IA~~L~ 130 (167)
|.|.+||-+|- -.||++.+.|....
T Consensus 179 rGWlvIDPkgl~Gdrg~D~ANlf~Np~~~~~~~pgRi~rqlai~a~ 224 (274)
T COG3570 179 RGWLVIDPKGLIGDRGFDYANLFCNPLDDLALAPGRIARQLAIFAH 224 (274)
T ss_pred CceEEEccccccCccccchHhhhcCCchhhhhChHHHHHHHHHHHH
Confidence 69999998864 46888888876643
Done!