Query 031004
Match_columns 167
No_of_seqs 129 out of 1004
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:11:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_L Ribosomal protein L13; 100.0 1.3E-56 4.6E-61 380.0 1.3 154 1-167 1-169 (250)
2 3r8s_J 50S ribosomal protein L 100.0 3.9E-33 1.3E-37 219.6 6.3 70 91-167 1-70 (142)
3 2ftc_H L13MT, MRP-L13, 39S rib 100.0 3.8E-33 1.3E-37 220.8 5.9 73 91-167 1-73 (148)
4 3v2d_N 50S ribosomal protein L 100.0 1.8E-32 6.2E-37 215.4 6.0 68 91-167 1-68 (140)
5 2zjr_G 50S ribosomal protein L 100.0 9.8E-32 3.4E-36 217.9 8.2 74 85-167 23-96 (174)
6 3f1f_N 50S ribosomal protein L 100.0 9.1E-32 3.1E-36 216.4 2.5 68 91-167 24-91 (163)
7 1vq8_J 50S ribosomal protein L 99.7 9.5E-19 3.2E-23 137.9 2.2 48 104-167 5-52 (145)
8 1j3a_A 50S ribosomal protein L 99.6 2.6E-16 9E-21 123.3 4.1 39 108-158 1-39 (142)
9 3iz5_K 60S ribosomal protein L 99.6 3.6E-16 1.2E-20 129.4 4.0 43 103-157 6-48 (206)
10 2zkr_j 60S ribosomal protein L 98.8 1.7E-09 5.7E-14 89.4 2.8 30 104-133 2-32 (203)
11 4a17_I RPL13A, 60S ribosomal p 98.4 6.6E-08 2.3E-12 79.6 2.8 25 106-130 3-27 (198)
12 4b6a_O 60S ribosomal protein L 98.3 3.3E-07 1.1E-11 75.5 3.4 31 105-135 3-33 (199)
13 3jyw_M 60S ribosomal protein L 97.6 1.4E-05 4.7E-10 64.7 1.8 22 109-130 1-22 (178)
14 3stb_C RNA-editing complex pro 44.3 27 0.00091 27.4 4.3 32 104-150 83-114 (148)
15 3koj_A Uncharacterized protein 42.0 15 0.0005 26.8 2.4 28 107-150 53-80 (108)
16 2v1m_A Glutathione peroxidase; 36.4 21 0.00071 24.6 2.4 26 107-132 135-169 (169)
17 3lor_A Thiol-disulfide isomera 30.6 33 0.0011 23.3 2.6 28 105-132 121-157 (160)
18 3kb2_A SPBC2 prophage-derived 29.7 41 0.0014 23.2 3.0 26 106-131 141-166 (173)
19 3vdy_A SSB, single-stranded DN 28.5 34 0.0011 24.2 2.4 29 106-150 49-77 (116)
20 4dam_A Single-stranded DNA-bin 26.9 36 0.0012 25.2 2.4 30 105-150 61-90 (128)
21 3u5r_E Uncharacterized protein 25.7 53 0.0018 24.7 3.2 30 105-134 144-191 (218)
22 3ulp_A Single-strand binding p 24.7 41 0.0014 24.2 2.3 30 105-150 52-82 (124)
23 2f1e_A Protein APAG; APAG prot 24.2 32 0.0011 25.9 1.7 15 103-117 47-61 (127)
24 2cvb_A Probable thiol-disulfid 24.2 61 0.0021 23.0 3.1 31 105-135 117-164 (188)
25 2vw9_A Single-stranded DNA bin 23.8 44 0.0015 24.5 2.4 21 106-130 48-68 (134)
26 1xvs_A Protein APAG; MCSG APC2 23.2 35 0.0012 25.7 1.7 15 103-117 46-60 (126)
27 3afp_A Single-stranded DNA-bin 23.0 46 0.0016 25.6 2.4 29 106-150 52-80 (168)
28 1z9f_A Single-strand binding p 22.2 54 0.0018 24.9 2.6 29 106-150 62-90 (153)
29 3avr_A Lysine-specific demethy 21.9 26 0.00089 32.3 0.9 25 129-154 330-354 (531)
30 2ywi_A Hypothetical conserved 21.3 82 0.0028 22.3 3.3 30 105-134 131-178 (196)
31 1eqq_A Single stranded DNA bin 21.2 51 0.0018 25.6 2.4 21 106-130 53-73 (178)
32 1tza_A APAG protein, SOR45; st 21.2 40 0.0014 25.7 1.7 15 103-117 46-60 (134)
33 1qvc_A Single stranded DNA bin 21.1 60 0.002 24.2 2.6 21 106-130 52-72 (145)
34 3tqy_A Single-stranded DNA-bin 20.6 55 0.0019 24.9 2.4 29 106-150 55-83 (158)
35 2bmx_A Alkyl hydroperoxidase C 20.5 53 0.0018 23.9 2.2 49 104-155 131-192 (195)
36 1sr4_C CDT C, cytolethal diste 20.5 1.5E+02 0.0051 23.7 4.9 41 104-164 42-82 (166)
37 2v2f_A Penicillin binding prot 20.5 32 0.0011 18.7 0.7 16 108-123 7-22 (26)
38 2lrt_A Uncharacterized protein 20.0 65 0.0022 22.3 2.5 29 105-133 114-148 (152)
No 1
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.3e-56 Score=380.02 Aligned_cols=154 Identities=51% Similarity=0.809 Sum_probs=57.0
Q ss_pred CccccCCceeeeccCCCCCCCCCccccccccccccccccceeecccccC--CCCccccccceEEEecccc----------
Q 031004 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASAK--STSPLNTKRSFKVRCCQNL---------- 68 (167)
Q Consensus 1 m~~~~~~~~~~~~s~~~~~~~~~f~~~~~~~~~s~~~~~~~g~~~~~~~--~~~~~~~~~~~~V~C~~~~---------- 68 (167)
||++++++|++|||+|+ ++++|++++ +++||+||.++... .+.+++.+++++|+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 71 (250)
T 3bbo_L 1 MATMACASSLTFPSAQT--QKSFFGTNV-------KQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKE 71 (250)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeccceeccCCCC--CCccccccc-------ccCceeecccccccccccccccCCCcceEEeeeccchhhhhhccc
Confidence 89999999999999875 599999988 89999999886533 3345566789999999983
Q ss_pred ---ccccCCcchhhhhhhhcCCcccceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCC
Q 031004 69 ---SLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGA 145 (167)
Q Consensus 69 ---~~Vp~d~R~m~~~~e~~gP~i~~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD 145 (167)
++||+||||||++.|+.||||||+||++|+++..+++|+||||||+||+|||||++||++|+|||||+||||+||||
T Consensus 72 ~~~~~v~~~~~~~~~~~~~~g~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD 151 (250)
T 3bbo_L 72 FAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGA 151 (250)
T ss_dssp ----------------------------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSC
T ss_pred cccccccccccccccchhhcCCCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCC
Confidence 78999999999999999999999999999999667799999999999999999999999999999999999999999
Q ss_pred EEEEEcCcccccccccCCCCCC
Q 031004 146 YVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 146 ~VVVINA~kI~~~~a~~g~~W~ 167 (167)
|||||||+|| .++|++|+
T Consensus 152 ~VVVINAeKI----~lTG~K~~ 169 (250)
T 3bbo_L 152 FVIVVNADKV----AVSGKKRT 169 (250)
T ss_dssp CCEESCCSSC----CCCSGGGG
T ss_pred EEEEEecceE----EecCChhh
Confidence 9999999999 99999984
No 2
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=99.97 E-value=3.9e-33 Score=219.60 Aligned_cols=70 Identities=41% Similarity=0.653 Sum_probs=67.8
Q ss_pred ceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 91 ~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
|+||++++++ ++|+||||||+||+|||||++||++|+|||||+|||++||||+||||||++| .++|++|+
T Consensus 1 mkt~~~~~~~---~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki----~~tG~k~~ 70 (142)
T 3r8s_J 1 MKTFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKV----AVTGNKRT 70 (142)
T ss_dssp CCCCCCCTTT---CCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGC----BCCTTHHH
T ss_pred CCcccCChhh---ccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCccc----CccCchhh
Confidence 6899999999 9999999999999999999999999999999999999999999999999999 99999874
No 3
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.97 E-value=3.8e-33 Score=220.76 Aligned_cols=73 Identities=21% Similarity=0.436 Sum_probs=69.8
Q ss_pred ceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 91 ~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
|.||+++++++.+++|+||||||+||+|||||++||++|+|||||+|||++||||+||||||++| .++|++|+
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki----~~tG~k~~ 73 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHI----AFSGNKWE 73 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceee----EeccchHh
Confidence 46899999997788999999999999999999999999999999999999999999999999999 99999985
No 4
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=99.97 E-value=1.8e-32 Score=215.39 Aligned_cols=68 Identities=37% Similarity=0.622 Sum_probs=65.3
Q ss_pred ceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 91 ~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
|+||++| + ++|+||||||+||+|||||++||++|+|||||+|||++||||+|||||||+| .++|++|+
T Consensus 1 m~t~~~~--~---~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki----~~tG~k~~ 68 (140)
T 3v2d_N 1 MKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKI----RVTGKKLE 68 (140)
T ss_dssp CCCCCCC--C---CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGC----BCCTTHHH
T ss_pred Ccccccc--c---ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcce----EccCchhh
Confidence 6899998 6 8999999999999999999999999999999999999999999999999999 99999874
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=99.97 E-value=9.8e-32 Score=217.93 Aligned_cols=74 Identities=32% Similarity=0.515 Sum_probs=65.0
Q ss_pred cCCcccceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCC
Q 031004 85 NGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPP 164 (167)
Q Consensus 85 ~gP~i~~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~ 164 (167)
++-+.+|+||++|+ ++|+||||||+||+|||||++||++|+|||||+||||+||||+||||||++| +++|+
T Consensus 23 ~~~~~~m~T~~~k~-----~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki----~lTG~ 93 (174)
T 2zjr_G 23 LLRSFKVKTYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQV----ALTGK 93 (174)
T ss_dssp -------CCCCCCC-----SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTC----BCSSC
T ss_pred ccccceeeeeccCc-----ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeee----Eeccc
Confidence 44455789999987 6899999999999999999999999999999999999999999999999999 99999
Q ss_pred CCC
Q 031004 165 QWQ 167 (167)
Q Consensus 165 ~W~ 167 (167)
+|+
T Consensus 94 K~~ 96 (174)
T 2zjr_G 94 KLD 96 (174)
T ss_dssp SSS
T ss_pred hhh
Confidence 995
No 6
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=99.97 E-value=9.1e-32 Score=216.38 Aligned_cols=68 Identities=37% Similarity=0.622 Sum_probs=64.8
Q ss_pred ceeeccCCCCcccccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 91 ~kT~~~k~~d~~~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
|+||++| + ++|+||||||+|++|||||++||++|+|||||+||||+||||+|||||||+| .++|++|+
T Consensus 24 mkt~~~k--~---~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI----~iTG~K~~ 91 (163)
T 3f1f_N 24 VKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKI----RVTGKKLE 91 (163)
T ss_dssp -CCCCCC--C---CCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGC----BCSTTHHH
T ss_pred Ccccccc--c---ccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCccc----ccCCchhh
Confidence 7899998 6 8999999999999999999999999999999999999999999999999999 99999874
No 7
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.72 E-value=9.5e-19 Score=137.94 Aligned_cols=48 Identities=33% Similarity=0.282 Sum_probs=44.9
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCCCCC
Q 031004 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPPQWQ 167 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~~W~ 167 (167)
..++||||||+||+|||||++||++|+ |||+||||||||| .++|++|+
T Consensus 5 ~~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki----~iTG~k~~ 52 (145)
T 1vq8_J 5 EFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERA----VITGREEQ 52 (145)
T ss_dssp CCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGC----EEESCHHH
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEee----Eecchhhh
Confidence 456899999999999999999999999 9999999999999 99999873
No 8
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=99.61 E-value=2.6e-16 Score=123.31 Aligned_cols=39 Identities=33% Similarity=0.401 Sum_probs=37.1
Q ss_pred EEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccc
Q 031004 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSC 158 (167)
Q Consensus 108 W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~ 158 (167)
||||||+||+|||||++||++|+ |||+|||||||||.-+
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iT 39 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVIT 39 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEE
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEec
Confidence 99999999999999999999999 9999999999998643
No 9
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.60 E-value=3.6e-16 Score=129.39 Aligned_cols=43 Identities=35% Similarity=0.332 Sum_probs=40.7
Q ss_pred cccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCccccc
Q 031004 103 HSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYS 157 (167)
Q Consensus 103 ~~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~ 157 (167)
.+.|+||||||+||+|||||++||++|+ +||+||||||++|.-
T Consensus 6 ~f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~i 48 (206)
T 3iz5_K 6 GVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICM 48 (206)
T ss_dssp SCCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEE
T ss_pred ccceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCc
Confidence 4899999999999999999999999999 899999999999854
No 10
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.79 E-value=1.7e-09 Score=89.36 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCchhhHHHHHHH-HHhcCC
Q 031004 104 SDKTWYVVDATDKILGRLASTIAI-HIRGKN 133 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~-~L~GKh 133 (167)
.+|+||||||+|++|||||+.||+ +|+|+|
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~ 32 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLLGRK 32 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHHTCC
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCe
Confidence 467999999999999999999999 999975
No 11
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=98.45 E-value=6.6e-08 Score=79.57 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=23.9
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHh
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
++||||||+|++|||||++||++|+
T Consensus 3 ~~w~VIDA~g~~LGRLAs~VAk~L~ 27 (198)
T 4a17_I 3 DKLVVIDAKGHLLGRLASYVAKELL 27 (198)
T ss_dssp SSCEEEECTTBBHHHHHHHHHHHHH
T ss_pred ccEEEEeCCCCchHHHHHHHHHHHh
Confidence 5899999999999999999999887
No 12
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=98.29 E-value=3.3e-07 Score=75.51 Aligned_cols=31 Identities=42% Similarity=0.536 Sum_probs=27.1
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHhcCCCC
Q 031004 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLA 135 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP 135 (167)
.+.|+||||+|++|||||+.||+.|++-.+.
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~V 33 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLLNGQKI 33 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCEE
Confidence 3589999999999999999999999975543
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=97.65 E-value=1.4e-05 Score=64.75 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=21.3
Q ss_pred EEEeCCCCchhhHHHHHHHHHh
Q 031004 109 YVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 109 ~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
+||||+||+|||||++||++|+
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~ 22 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL 22 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT
T ss_pred CEEcCCCCchHHHHHHHHHHHh
Confidence 5899999999999999999999
No 14
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=44.29 E-value=27 Score=27.41 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=28.6
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
....|+-|=+-| |.||..|..+|. .||.|+|.
T Consensus 83 ~~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVe 114 (148)
T 3stb_C 83 PDKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVT 114 (148)
T ss_dssp CSEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEE
T ss_pred CccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEE
Confidence 567899998888 899999999999 89999885
No 15
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=42.01 E-value=15 Score=26.83 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.2
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 107 ~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
.|+=+-+ -|++|..++++|. -||.|+|-
T Consensus 53 ~fi~vv~----wgk~AE~~~~yl~------------KG~~V~Ve 80 (108)
T 3koj_A 53 ARLKVVG----WGAVAQELQDRCR------------LNDEVVLE 80 (108)
T ss_dssp EEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEEEEEE----EhHHHHHHHHhCC------------CCCEEEEE
Confidence 6877766 4689999999998 79998885
No 16
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=36.45 E-value=21 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=18.7
Q ss_pred eEEEEeCCCCchhh---------HHHHHHHHHhcC
Q 031004 107 TWYVVDATDKILGR---------LASTIAIHIRGK 132 (167)
Q Consensus 107 ~W~vIDA~gq~LGR---------LAS~IA~~L~GK 132 (167)
.-+|||.+|++++| |...|..+|.+|
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~k 169 (169)
T 2v1m_A 135 SKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEKK 169 (169)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHCC
T ss_pred eEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 68999999998765 455566666543
No 17
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=30.58 E-value=33 Score=23.31 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=21.1
Q ss_pred cceEEEEeCCCCchhh---------HHHHHHHHHhcC
Q 031004 105 DKTWYVVDATDKILGR---------LASTIAIHIRGK 132 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGR---------LAS~IA~~L~GK 132 (167)
....+|||.+|+++.| |...|..+|..+
T Consensus 121 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 157 (160)
T 3lor_A 121 TPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSET 157 (160)
T ss_dssp SSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTCC
T ss_pred cceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhcc
Confidence 3578999999998876 667777777643
No 18
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=29.70 E-value=41 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.044 Sum_probs=23.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhc
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRG 131 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~G 131 (167)
..+++||+.++.+-.++.+|...++.
T Consensus 141 ~~~~~id~~~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 141 LHTYSWDTGQWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp SCEEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHhC
Confidence 37999999999999999999999985
No 19
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=28.45 E-value=34 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
-.|+=+-+ -|++|..++.+|. .||.|+|.
T Consensus 49 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 77 (116)
T 3vdy_A 49 ADYVNCTL----WRKTAENTALYCQ------------KGSLVGVS 77 (116)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ECHHHHHHHHhCC------------CCCEEEEE
Confidence 36765555 4789999999987 57777664
No 20
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=26.90 E-value=36 Score=25.16 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=24.1
Q ss_pred cceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
.-.|+=|-|- |++|..++++|. -||.|+|.
T Consensus 61 ~t~w~~v~~w----g~~Ae~~~~~l~------------KG~~V~Ve 90 (128)
T 4dam_A 61 HTNFFTVWAN----RQLATNASGSLA------------VGDPVVVQ 90 (128)
T ss_dssp EEEEEEEEEE----HHHHHHHHHHCC------------TTCEEEEE
T ss_pred CcEEEEEEEE----cHHHHHHHHhcC------------CCCEEEEE
Confidence 4468877764 789999999998 69998875
No 21
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=25.72 E-value=53 Score=24.65 Aligned_cols=30 Identities=13% Similarity=0.454 Sum_probs=24.4
Q ss_pred cceEEEEeCCCCchhh------------------HHHHHHHHHhcCCC
Q 031004 105 DKTWYVVDATDKILGR------------------LASTIAIHIRGKNL 134 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGR------------------LAS~IA~~L~GKhK 134 (167)
....+|||.+|+++.| |...|..+|.|+.-
T Consensus 144 ~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 191 (218)
T 3u5r_E 144 TPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDV 191 (218)
T ss_dssp ESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCC
T ss_pred CCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCC
Confidence 3578999999998854 78888999988764
No 22
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=24.72 E-value=41 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=22.5
Q ss_pred cceEEEEeCCCCchh-hHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 105 DKTWYVVDATDKILG-RLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 105 ~r~W~vIDA~gq~LG-RLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
.-.||=|-|- | ++|..++.+|. .||.|+|.
T Consensus 52 ~t~~~~v~~w----g~~~Ae~~~~~l~------------KG~~V~V~ 82 (124)
T 3ulp_A 52 KTDWHRIVVY----DQNIVDLIDKYLR------------KGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEEC----CHHHHHHHHHHCC------------TTCEEEEE
T ss_pred ccEEEEEEEE----EchHHHHHHhhcC------------CCCEEEEE
Confidence 3478777664 5 79999999987 67777764
No 23
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=24.22 E-value=32 Score=25.89 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=12.6
Q ss_pred cccceEEEEeCCCCc
Q 031004 103 HSDKTWYVVDATDKI 117 (167)
Q Consensus 103 ~~~r~W~vIDA~gq~ 117 (167)
...|.|.|.||+|++
T Consensus 47 L~sRhW~Itd~~g~~ 61 (127)
T 2f1e_A 47 LVARHWQITDGNGRT 61 (127)
T ss_dssp EEEEEEEEEETTSCE
T ss_pred EEeceEEEEeCCCCE
Confidence 367999999999875
No 24
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=24.16 E-value=61 Score=23.01 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=23.9
Q ss_pred cceEEEEeCCCCchhh-----------------HHHHHHHHHhcCCCC
Q 031004 105 DKTWYVVDATDKILGR-----------------LASTIAIHIRGKNLA 135 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGR-----------------LAS~IA~~L~GKhKP 135 (167)
....+|||.+|+++.+ |...|..+|.|+..+
T Consensus 117 ~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~ 164 (188)
T 2cvb_A 117 TPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEPP 164 (188)
T ss_dssp ESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCCC
T ss_pred CCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCCCC
Confidence 3567999999998776 677888888877543
No 25
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=23.80 E-value=44 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.0
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHh
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
-.||=|-| -|++|..++.+|.
T Consensus 48 t~~~~v~~----wg~~Ae~~~~~l~ 68 (134)
T 2vw9_A 48 VCFIDARL----FGRTAEIANQYLS 68 (134)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC
T ss_pred cEEEEEEE----EcHHHHHHHHhCC
Confidence 35776665 4789999999887
No 26
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=23.20 E-value=35 Score=25.68 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.6
Q ss_pred cccceEEEEeCCCCc
Q 031004 103 HSDKTWYVVDATDKI 117 (167)
Q Consensus 103 ~~~r~W~vIDA~gq~ 117 (167)
...|.|.|.||+|++
T Consensus 46 L~sRhW~Itd~~g~~ 60 (126)
T 1xvs_A 46 LMSRRWLITDADGKQ 60 (126)
T ss_dssp EEEEEEEEEETTCCE
T ss_pred EEecEEEEEeCCCCE
Confidence 367999999999874
No 27
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=22.97 E-value=46 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
-.||=|-+- |++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~w----g~~Ae~~~~~l~------------KG~~V~Ve 80 (168)
T 3afp_A 52 ALFLRCNIW----REAAENVAESLT------------RGARVIVT 80 (168)
T ss_dssp CEEEEEEEE----HHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEEe----hHHHHHHHHhCC------------CCCEEEEE
Confidence 467777664 789999999988 57776664
No 28
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=22.22 E-value=54 Score=24.92 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
-.|+=|-|- |++|..++++|. -||.|+|.
T Consensus 62 t~~~~v~~w----g~~Ae~~~~~l~------------KG~~V~Ve 90 (153)
T 1z9f_A 62 TDFFRIVTF----GRLAEFARTYLT------------KGRLVLVE 90 (153)
T ss_dssp EEEEEEEEE----HHHHHHHHHHCC------------TTCEEEEE
T ss_pred eEEEEEEEE----CHHHHHHHhhCC------------CCCEEEEE
Confidence 357766654 789999999987 57777764
No 29
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=21.88 E-value=26 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=16.9
Q ss_pred HhcCCCCccCCCCCCCCEEEEEcCcc
Q 031004 129 IRGKNLATYTPSVDMGAYVIVVCGLH 154 (167)
Q Consensus 129 L~GKhKP~YtP~~D~GD~VVVINA~k 154 (167)
|.-..-|.|.--+..||+|| ++..-
T Consensus 330 L~~~gIPvyr~vQkpGd~Vi-~~Pga 354 (531)
T 3avr_A 330 LYEANVPVYRFIQRPGDLVW-INAGT 354 (531)
T ss_dssp HHHTTCCCEEEEECTTCEEE-ECTTC
T ss_pred HHhCCCCeEEEEECCCCEEE-ECCCc
Confidence 44455677777788999975 44443
No 30
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=21.26 E-value=82 Score=22.30 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=22.7
Q ss_pred cceEEEEeCCCCchhh------------------HHHHHHHHHhcCCC
Q 031004 105 DKTWYVVDATDKILGR------------------LASTIAIHIRGKNL 134 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGR------------------LAS~IA~~L~GKhK 134 (167)
....+|||.+|+++.| |...|..+|.|+..
T Consensus 131 ~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~ 178 (196)
T 2ywi_A 131 TPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPV 178 (196)
T ss_dssp ESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCC
T ss_pred CCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCC
Confidence 3568999999998755 66778888887643
No 31
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=21.25 E-value=51 Score=25.62 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.4
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHh
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
..||=|-+- |++|..++.+|.
T Consensus 53 t~~i~vv~w----g~~Ae~~~~~l~ 73 (178)
T 1eqq_A 53 TEWHRVVLF----GKLAEVASEYLR 73 (178)
T ss_dssp EEEEEEEEC----HHHHHHHHHHCC
T ss_pred cEEEEEEEc----cHHHHHHHHhcC
Confidence 468777664 679999999987
No 32
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=21.20 E-value=40 Score=25.73 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=12.6
Q ss_pred cccceEEEEeCCCCc
Q 031004 103 HSDKTWYVVDATDKI 117 (167)
Q Consensus 103 ~~~r~W~vIDA~gq~ 117 (167)
...|.|.|.||+|++
T Consensus 46 L~sRhW~Itd~~g~~ 60 (134)
T 1tza_A 46 LETRHWIITDANGKT 60 (134)
T ss_dssp EEEEEEEEEETTSCE
T ss_pred EEecEEEEEeCCCCE
Confidence 367999999999875
No 33
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=21.08 E-value=60 Score=24.15 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHh
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIR 130 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~ 130 (167)
-.||=|-+- |++|..++.+|.
T Consensus 52 t~~~~v~~w----g~~Ae~~~~~l~ 72 (145)
T 1qvc_A 52 TEWHRVVLF----GKLAEVASEYLR 72 (145)
T ss_dssp CEEEEEEEE----THHHHHHHHHCC
T ss_pred cEEEEEEEe----hHHHHHHHHhcC
Confidence 468877664 579999999987
No 34
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=20.63 E-value=55 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=21.5
Q ss_pred ceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 031004 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (167)
Q Consensus 106 r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVI 150 (167)
-.||=|-+ .|++|..++.+|. .||.|+|.
T Consensus 55 t~~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 83 (158)
T 3tqy_A 55 TEWHRIAF----FNRLAEIVGEYLR------------KGSKIYIE 83 (158)
T ss_dssp EEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred eEEEEEEE----EhHHHHHHHhhcC------------CCCEEEEE
Confidence 46776655 4679999999987 57777664
No 35
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=20.49 E-value=53 Score=23.87 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=18.4
Q ss_pred ccceEEEEeCCCCchhhH-------------HHHHHHHHhcCCCCccCCCCCCCCEEEEEcCccc
Q 031004 104 SDKTWYVVDATDKILGRL-------------ASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHA 155 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRL-------------AS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI 155 (167)
.....+|||.+|+++.+. -..|..++.|.-.|. +...|+.+++-|-+.+
T Consensus 131 ~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~~p~---~w~~~~~~~~~~~~~~ 192 (195)
T 2bmx_A 131 ADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDELCAS---NWRKGDPTLDAGELLK 192 (195)
T ss_dssp BCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC-------------------------
T ss_pred ccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhCCCcCc---ccccCCcccCCChHHh
Confidence 345789999998877653 345566666554331 5578999998776654
No 36
>1sr4_C CDT C, cytolethal distending toxin protein C; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1
Probab=20.47 E-value=1.5e+02 Score=23.67 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=29.9
Q ss_pred ccceEEEEeCCCCchhhHHHHHHHHHhcCCCCccCCCCCCCCEEEEEcCcccccccccCCC
Q 031004 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVCGLHAYSCILFLPP 164 (167)
Q Consensus 104 ~~r~W~vIDA~gq~LGRLAS~IA~~L~GKhKP~YtP~~D~GD~VVVINA~kI~~~~a~~g~ 164 (167)
..++|.|+|=...- +.+..|.+-+|-++|++. .+|++..++
T Consensus 42 e~~NW~l~ei~l~~-------------------~d~~~~~~G~VqFvn~~t-~tCL~~~~~ 82 (166)
T 1sr4_C 42 LSTHWELIDYKGKE-------------------YEKLRDGGTLVQFKVVGA-AKCFAFLGK 82 (166)
T ss_dssp GGGCEEEEECCCCT-------------------TCTTCTTCEEEEEECTTS-SEEECSSTT
T ss_pred hhCCcEEEEeccCc-------------------cccccCCCCeEEEEeCCC-CeeeeecCC
Confidence 56899999943222 344445588999999999 899877653
No 37
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=20.46 E-value=32 Score=18.67 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=12.8
Q ss_pred EEEEeCCCCchhhHHH
Q 031004 108 WYVVDATDKILGRLAS 123 (167)
Q Consensus 108 W~vIDA~gq~LGRLAS 123 (167)
=.|+|.+|+.+..|..
T Consensus 7 s~IYD~~g~~i~~lg~ 22 (26)
T 2v2f_A 7 SKIYDNKNQLIADLGS 22 (26)
T ss_pred CEEEeCCCCEeeeccc
Confidence 3689999999888754
No 38
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=20.03 E-value=65 Score=22.32 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=22.7
Q ss_pred cceEEEEeCCCCchhh------HHHHHHHHHhcCC
Q 031004 105 DKTWYVVDATDKILGR------LASTIAIHIRGKN 133 (167)
Q Consensus 105 ~r~W~vIDA~gq~LGR------LAS~IA~~L~GKh 133 (167)
....+|||.+|+++.| +...+...|.|.|
T Consensus 114 ~P~~~lid~~G~i~~~~~g~~~~e~~~~~~~~~~~ 148 (152)
T 2lrt_A 114 LPSVFLVNRNNELSARGENIKDLDEAIKKLLEGHH 148 (152)
T ss_dssp CSEEEEEETTTEEEEETTTCSCHHHHHHHHHGGGT
T ss_pred CceEEEECCCCeEEEecCCHHHHHHHHHHHHhccc
Confidence 4588999999999876 4566777777766
Done!