BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031005
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSL-RXXXXXXXXXXXXXXXPES 60
T+D + LPD Q LE L++ N L LP +I SL R PE
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 61 IGSCYSLEELQANDNL---------IGELPASICNLIHLKSLCLNNNNIGQIPANL---- 107
+ S + E Q NL I LPASI NL +LKSL + N+ + + +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP 229
Query: 108 ------LKDCKALQNI 117
L+ C AL+N
Sbjct: 230 KLEELDLRGCTALRNY 245
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 23/98 (23%)
Query: 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
+ L+GN +T LP E+ L L L + N LT L P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-----------------------PAE 288
Query: 61 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNN 98
+GSC+ L+ DN++ LP NL +L+ L + N
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 34.3 bits (77), Expect = 0.038, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 67 LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
L L N N + ELPA I NL +L+ L L++N + +PA L C L+ +N ++
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDNMVT 306
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPETI-GSLRXXXXXXXXXXXXXXXP 58
+ L GN++ SLP+ +L L+ L ++ N L LP+ + L P
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP 149
Query: 59 ESI-GSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
+ + +L L ++N + LP + + L LK L LN+N + +P + +L +
Sbjct: 150 KGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
Query: 117 ISLHNNP 123
I L NNP
Sbjct: 210 IWLLNNP 216
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 10 SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRXXXXXXXXXXX-XXXXPESIGSCYSL 67
++P LG L +L L + NML +P+ + ++ P + +C +L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 68 EELQ-ANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 122
+ +N+ L GE+P I L +L L L+NN+ G IPA L DC++L + L+ N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTN 548
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 64 CYSLEELQANDNLI-GELPASICNLIHLKSLCLNNNNIGQ-IPANLLKDCKALQNISLHN 121
C L+ L + N I G++ S C ++L+ L +++NN IP L DC ALQ++ +
Sbjct: 177 CGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISG 232
Query: 122 NPISMD 127
N +S D
Sbjct: 233 NKLSGD 238
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 1 MTLDGNRITS-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRXXXXXX-XXXXXXXXX 57
+ LD N +T +P L L +S+ N LT +P+ IG L
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 58 PESIGSCYSLEELQANDNLI-GELPASI 84
P +G C SL L N NL G +PA++
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAM 558
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 10 SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRXXXXXXXXXXX-XXXXPESIGSCYSL 67
++P LG L +L L + NML +P+ + ++ P + +C +L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 68 EELQ-ANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNN 122
+ +N+ L GE+P I L +L L L+NN+ G IPA L DC++L + L+ N
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTN 545
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 64 CYSLEELQANDNLI-GELPASICNLIHLKSLCLNNNNIGQ-IPANLLKDCKALQNISLHN 121
C L+ L + N I G++ S C ++L+ L +++NN IP L DC ALQ++ +
Sbjct: 174 CGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISG 229
Query: 122 NPISMD 127
N +S D
Sbjct: 230 NKLSGD 235
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 1 MTLDGNRITS-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRXXXXXX-XXXXXXXXX 57
+ LD N +T +P L L +S+ N LT +P+ IG L
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 58 PESIGSCYSLEELQANDNLI-GELPASI 84
P +G C SL L N NL G +PA++
Sbjct: 528 PAELGDCRSLIWLDLNTNLFNGTIPAAM 555
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 59 ESIGSCYS-LEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
+S+ S ++ LE+L N I ++ + L HLK L L+ N + +P + +LQ
Sbjct: 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQK 351
Query: 117 ISLHNNP 123
I LH NP
Sbjct: 352 IWLHTNP 358
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ LD N++ SLP L +L LS+ N L LP+ +
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV--------------------- 152
Query: 60 SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
SL+EL+ +N + +P + L LK+L L+NN + ++P + L+ +
Sbjct: 153 -FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 119 LHNNP 123
L NP
Sbjct: 212 LQENP 216
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 4/128 (3%)
Query: 1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGS--LRXXXXXXXXXXXXXXX 57
+ L+ N++ +LP +L LE L + N L LP + +
Sbjct: 66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125
Query: 58 PESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
P S L L N + LP + + L LK L L NN + ++P L+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 117 ISLHNNPI 124
+ L NN +
Sbjct: 186 LKLDNNQL 193
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 68 EELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
++L N + LP+ + L L+ L LN+N + +PA + K+ K L+ + + +N +
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N + +LPD+ L L L + GN ++ +PE
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----------------------R 171
Query: 60 SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+ +SL+ L + N + + P + +L L +L L NN+ +P L +ALQ +
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Query: 119 LHNNPISMD 127
L++NP D
Sbjct: 232 LNDNPWVCD 240
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N + +LPD+ L L L + GN ++ +PE
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----------------------R 170
Query: 60 SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+ +SL+ L + N + + P + +L L +L L NN+ +P L +ALQ +
Sbjct: 171 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 230
Query: 119 LHNNPISMD 127
L++NP D
Sbjct: 231 LNDNPWVCD 239
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
L++L N N + +P + + L L L LN+N++ IP + K+L +I L+NNP
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 3/126 (2%)
Query: 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETI-GSLRXXXXXXXXXXXXXXXP 58
+ L N+IT L P L+ L+ L + N L LP + SL P
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 59 ESI-GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNI 117
++ L+EL N + ELP I L HL L L+ N + IP +L +
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164
Query: 118 SLHNNP 123
L NP
Sbjct: 165 YLFGNP 170
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N + +LPD L L L + GN + +PE
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPE----------------------H 170
Query: 60 SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+ +SL+ L + N + + P + +L L +L L NN+ +PA +L ++LQ +
Sbjct: 171 AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLR 230
Query: 119 LHNNPISMD 127
L++NP D
Sbjct: 231 LNDNPWVCD 239
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
P L L+ L L +NN+ +P N +D L ++ LH N I
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
L L ++N + LPA + + L L L LN+N + IP + K+L +I L NNP
Sbjct: 64 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
L L ++N + LPA + + L L L LN+N + IP + K+L +I L NNP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
L L ++N + LPA + + L L L LN+N + IP + ++L +I L NNP
Sbjct: 56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 31.6 bits (70), Expect = 0.22, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 49/126 (38%), Gaps = 34/126 (26%)
Query: 4 DGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPESIGS 63
D N++T LP+ LE LS+ N LT LPE PE
Sbjct: 148 DNNQLTXLPE---LPTSLEVLSVRNNQLTFLPE--------------------LPE---- 180
Query: 64 CYSLEELQANDNLIGELPASICNLIHLKSLCL----NNNNIGQIPANLLKDCKALQNISL 119
SLE L + NL+ LPA H + + N I IP N+L I L
Sbjct: 181 --SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIIL 237
Query: 120 HNNPIS 125
+NP+S
Sbjct: 238 EDNPLS 243
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
L++L N + LP+ + + L LK L LN N + IPA LQ +SL N +
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
L++L N + LP+ + + L LK L LN N + IPA LQ +SL N +
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 76 LIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126
L G+LPA + I L SL L N I +IPAN + ++N+S +N +
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
S+ L L+ L L+NN + ++PA L D K LQ + LH N I+
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNIT 277
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 66 SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQI------PANLLKDCKALQNISL 119
+L EL ++N + +PA + +L L+ + L+ NNI ++ P ISL
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Query: 120 HNNPI 124
NNP+
Sbjct: 302 FNNPV 306
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NNN+ ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NNN+ ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NNN+ ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQI------PANLLKDCKA 113
S+ + L EL N+N + ++P + + +++ + L+NNNI I P +
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294
Query: 114 LQNISLHNNPISM 126
+SL +NP+
Sbjct: 295 YSGVSLFSNPVQY 307
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQI------PANLLKDCKA 113
S+ + L EL N+N + ++P + + +++ + L+NNNI I P +
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294
Query: 114 LQNISLHNNPISM 126
+SL +NP+
Sbjct: 295 YSGVSLFSNPVQY 307
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 83 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 122
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NNN+ ++PA LL + L +
Sbjct: 123 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 179
Query: 119 LHNN 122
L N
Sbjct: 180 LQEN 183
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NNN+ ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 66 SLEELQANDNLIG-ELPASIC-----NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
SLE+L +N++ +C L HL+ L LN+N + +P + AL+ +SL
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 120 HNNPISM 126
++N +++
Sbjct: 512 NSNRLTV 518
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NN++ ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
+ + GN++TSLP L+ L SI N LT LP L P
Sbjct: 86 LEVSGNQLTSLPVLPPGLLEL---SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142
Query: 61 IGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLH 120
L+EL +DN + LPA L L + NN + +P +L LQ +S+
Sbjct: 143 ------LQELSVSDNQLASLPALPSELCKLWAY---NNQLTSLP--MLP--SGLQELSVS 189
Query: 121 NNPIS 125
+N ++
Sbjct: 190 DNQLA 194
Score = 26.6 bits (57), Expect = 7.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP 35
+ + GNR+TSLP + L+ L + GN LT LP
Sbjct: 226 LIVSGNRLTSLPVLPSE---LKELMVSGNRLTSLP 257
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NN + ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
LE LQ + NL+ ++ N L L +L L +N + +P + L+ + L NNPI
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NN + ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 58 PESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQN 116
P S L L N + LP + + L L L L+ N + IP + + K+L +
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTH 116
Query: 117 ISLHNNP 123
I L NNP
Sbjct: 117 IYLFNNP 123
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 67 LEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124
LE LQ + NL+ ++ N L L +L L +N + +P + L+ + L NNPI
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 87 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127
L L L L +NN+ +P +L + L + LH+NP + D
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 65 YSLEELQANDNLIGELPASICN-LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
+ LE LQ N I ++ N L L +L L +N + IP+ + L+ + L NNP
Sbjct: 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158
Query: 124 I 124
I
Sbjct: 159 I 159
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI 38
L NRI S+P ++ L L+ L++ N L +P+ +
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NN + ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 1 MTLDGNRITSLPDELGQ-LVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPE 59
+ L N++ SLP LGQ L L L + N LT LP +G+LR
Sbjct: 82 LDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLP--LGALR----------------- 121
Query: 60 SIGSCYSLEELQANDNLIGELPASICNLI-HLKSLCLNNNNIGQIPANLLKDCKALQNIS 118
+G L+EL N + LP + L+ L L NN + ++PA LL + L +
Sbjct: 122 GLGE---LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLL 178
Query: 119 LHNN 122
L N
Sbjct: 179 LQEN 182
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRXXXXXXXXXXXXXXXPES 60
+ LDGN+ T +P EL L + + N ++ L +S
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN----------------------QS 73
Query: 61 IGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISL 119
+ L L + N + +P + L L+ L L+ N+I +P D AL ++++
Sbjct: 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133
Query: 120 HNNPISMD 127
NP+ D
Sbjct: 134 GANPLYCD 141
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETI 38
+ L N+I S+P ++ +L L+ L++ N L +P+ I
Sbjct: 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIG 39
L GNR T +P +L RL + S+ GN T + T+G
Sbjct: 319 LAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLG 355
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 70 LQANDNLIGELPASIC-NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125
L+ ND + LP I N L +L ++NNN+ +I + + +LQN+ L +N ++
Sbjct: 130 LERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 86 NLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123
NL L + L +NN+ +P +L L+ I LH+NP
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,856,539
Number of Sequences: 62578
Number of extensions: 114866
Number of successful extensions: 315
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 127
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)