Query 031005
Match_columns 167
No_of_seqs 121 out of 1467
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:49:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617 Ras suppressor protein 99.7 5.7E-19 1.2E-23 118.5 -2.6 126 1-127 61-188 (264)
2 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.2E-22 111.2 -2.5 140 1-141 38-181 (264)
3 KOG4194 Membrane glycoprotein 99.6 1.7E-16 3.6E-21 123.4 0.8 135 1-135 298-439 (873)
4 PLN00113 leucine-rich repeat r 99.5 3.3E-14 7.2E-19 120.2 8.7 123 2-125 146-273 (968)
5 KOG4194 Membrane glycoprotein 99.5 1E-14 2.2E-19 113.7 4.3 158 1-160 83-270 (873)
6 PF14580 LRR_9: Leucine-rich r 99.5 4.2E-14 9E-19 96.7 4.9 119 5-126 6-127 (175)
7 PLN00113 leucine-rich repeat r 99.5 1E-13 2.2E-18 117.3 8.2 124 1-125 169-297 (968)
8 PF14580 LRR_9: Leucine-rich r 99.5 5.7E-14 1.2E-18 96.0 5.4 124 1-128 24-154 (175)
9 KOG0444 Cytoskeletal regulator 99.5 6.4E-15 1.4E-19 115.9 -0.0 144 3-147 62-208 (1255)
10 KOG0472 Leucine-rich repeat pr 99.5 2.6E-14 5.5E-19 107.1 2.6 124 3-127 419-543 (565)
11 KOG0444 Cytoskeletal regulator 99.4 1.3E-14 2.9E-19 114.1 -1.0 153 5-157 41-197 (1255)
12 KOG1259 Nischarin, modulator o 99.4 2.2E-14 4.8E-19 104.2 -0.1 125 1-127 289-414 (490)
13 KOG0472 Leucine-rich repeat pr 99.4 3.1E-14 6.6E-19 106.7 -2.7 126 2-130 166-315 (565)
14 KOG0532 Leucine-rich repeat (L 99.2 2E-12 4.3E-17 100.6 1.5 121 3-126 105-248 (722)
15 KOG0618 Serine/threonine phosp 99.2 1.7E-12 3.8E-17 105.5 0.8 138 2-140 365-504 (1081)
16 PRK15370 E3 ubiquitin-protein 99.2 5.5E-11 1.2E-15 97.6 8.7 116 2-126 247-381 (754)
17 KOG4237 Extracellular matrix p 99.2 2E-12 4.3E-17 96.8 -0.4 132 6-139 56-191 (498)
18 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.3E-17 102.1 -2.0 135 1-137 80-238 (722)
19 PRK15370 E3 ubiquitin-protein 99.2 8.7E-11 1.9E-15 96.5 8.7 116 1-127 183-298 (754)
20 PRK15387 E3 ubiquitin-protein 99.2 4.2E-11 9.1E-16 98.2 6.7 106 20-132 343-465 (788)
21 KOG4237 Extracellular matrix p 99.1 2.7E-12 5.8E-17 96.1 -3.7 124 1-124 72-200 (498)
22 PLN03150 hypothetical protein; 99.1 8.2E-10 1.8E-14 89.7 9.1 105 21-125 420-528 (623)
23 KOG0618 Serine/threonine phosp 99.1 3.2E-11 6.8E-16 98.4 0.8 123 1-125 388-513 (1081)
24 PF13855 LRR_8: Leucine rich r 99.0 2.4E-10 5.3E-15 64.9 3.7 59 19-77 1-61 (61)
25 PRK15387 E3 ubiquitin-protein 99.0 8.4E-10 1.8E-14 90.7 8.1 94 1-105 206-319 (788)
26 PLN03150 hypothetical protein; 99.0 1.1E-09 2.5E-14 88.9 8.5 100 1-100 423-527 (623)
27 KOG1859 Leucine-rich repeat pr 99.0 5.2E-12 1.1E-16 100.9 -5.7 134 2-138 170-305 (1096)
28 cd00116 LRR_RI Leucine-rich re 99.0 9.9E-10 2.1E-14 82.0 6.3 106 21-126 110-235 (319)
29 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.9E-15 84.8 1.5 121 15-138 280-401 (490)
30 KOG4579 Leucine-rich repeat (L 99.0 5.4E-11 1.2E-15 77.3 -1.1 105 2-106 33-141 (177)
31 cd00116 LRR_RI Leucine-rich re 99.0 8.6E-10 1.9E-14 82.3 5.1 124 2-125 114-263 (319)
32 PF13855 LRR_8: Leucine rich r 99.0 2.9E-10 6.3E-15 64.6 1.9 57 43-99 2-60 (61)
33 COG4886 Leucine-rich repeat (L 99.0 1.7E-10 3.6E-15 88.9 1.1 96 3-98 123-219 (394)
34 PLN03210 Resistant to P. syrin 98.9 7E-09 1.5E-13 89.6 9.1 113 6-122 599-714 (1153)
35 COG4886 Leucine-rich repeat (L 98.9 8.7E-10 1.9E-14 84.9 3.1 123 1-125 145-290 (394)
36 PLN03210 Resistant to P. syrin 98.9 1.8E-08 4E-13 87.1 10.2 110 9-123 792-904 (1153)
37 KOG1644 U2-associated snRNP A' 98.7 2.5E-08 5.4E-13 68.9 4.9 103 18-121 41-149 (233)
38 KOG4579 Leucine-rich repeat (L 98.6 4.7E-09 1E-13 68.4 -0.4 128 20-148 28-160 (177)
39 KOG0531 Protein phosphatase 1, 98.6 9.2E-09 2E-13 79.9 0.4 121 4-127 80-201 (414)
40 KOG1859 Leucine-rich repeat pr 98.6 1.3E-09 2.8E-14 87.6 -4.6 123 17-142 162-285 (1096)
41 KOG4658 Apoptotic ATPase [Sign 98.5 8.8E-08 1.9E-12 80.3 4.5 117 6-123 533-653 (889)
42 PF12799 LRR_4: Leucine Rich r 98.5 1.7E-07 3.7E-12 49.4 4.0 38 20-57 2-39 (44)
43 KOG1644 U2-associated snRNP A' 98.5 1.2E-07 2.6E-12 65.6 4.1 129 18-149 18-156 (233)
44 PF12799 LRR_4: Leucine Rich r 98.4 4.3E-07 9.4E-12 47.9 3.9 38 43-80 2-39 (44)
45 KOG0531 Protein phosphatase 1, 98.4 7.8E-08 1.7E-12 74.8 1.2 119 17-138 70-191 (414)
46 KOG3207 Beta-tubulin folding c 98.3 1.3E-07 2.8E-12 72.1 -0.2 40 16-55 143-185 (505)
47 KOG3207 Beta-tubulin folding c 98.2 3.4E-07 7.3E-12 69.9 0.4 84 17-100 195-283 (505)
48 KOG1909 Ran GTPase-activating 98.1 8.6E-07 1.9E-11 65.9 0.5 111 15-125 88-226 (382)
49 KOG1909 Ran GTPase-activating 98.1 1.1E-06 2.4E-11 65.4 1.0 126 1-126 97-255 (382)
50 KOG4658 Apoptotic ATPase [Sign 98.0 6.1E-06 1.3E-10 69.6 4.0 108 16-125 520-631 (889)
51 KOG3665 ZYG-1-like serine/thre 98.0 1.5E-05 3.2E-10 65.7 5.6 114 16-130 145-268 (699)
52 KOG2982 Uncharacterized conser 97.9 6E-06 1.3E-10 60.7 2.5 77 1-77 76-158 (418)
53 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 56.1 7.4 31 89-122 157-187 (426)
54 KOG2739 Leucine-rich acidic nu 97.7 2.3E-05 5.1E-10 56.3 2.7 102 16-118 40-149 (260)
55 KOG2123 Uncharacterized conser 97.6 3.2E-06 6.9E-11 61.6 -2.9 105 18-126 18-129 (388)
56 KOG2123 Uncharacterized conser 97.5 6E-06 1.3E-10 60.2 -2.5 85 41-127 18-103 (388)
57 PRK15386 type III secretion pr 97.5 0.00033 7.1E-09 54.3 6.5 99 15-125 48-169 (426)
58 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.9E-09 60.2 2.3 85 15-100 169-262 (699)
59 PF13306 LRR_5: Leucine rich r 97.3 0.00092 2E-08 43.1 5.8 103 14-121 7-112 (129)
60 PF13306 LRR_5: Leucine rich r 97.2 0.0014 3.1E-08 42.3 5.7 103 8-115 23-129 (129)
61 KOG2120 SCF ubiquitin ligase, 97.1 3E-05 6.5E-10 57.2 -2.8 108 15-122 206-323 (419)
62 KOG2739 Leucine-rich acidic nu 96.9 0.00053 1.1E-08 49.4 2.2 89 34-125 35-129 (260)
63 KOG2120 SCF ubiquitin ligase, 96.9 0.00016 3.6E-09 53.4 -0.5 121 2-122 216-348 (419)
64 PF00560 LRR_1: Leucine Rich R 96.9 0.0005 1.1E-08 30.3 1.0 19 21-39 2-20 (22)
65 COG5238 RNA1 Ran GTPase-activa 96.6 0.0032 6.9E-08 46.2 3.9 40 16-55 89-133 (388)
66 PF00560 LRR_1: Leucine Rich R 96.5 0.001 2.2E-08 29.3 0.8 19 44-62 2-20 (22)
67 KOG0473 Leucine-rich repeat pr 96.4 4.5E-05 9.8E-10 54.4 -6.4 91 37-128 37-127 (326)
68 KOG2982 Uncharacterized conser 96.2 0.0047 1E-07 45.9 3.2 125 1-125 102-262 (418)
69 COG5238 RNA1 Ran GTPase-activa 96.2 0.0059 1.3E-07 44.9 3.4 126 2-127 98-257 (388)
70 PF13504 LRR_7: Leucine rich r 95.9 0.006 1.3E-07 25.0 1.5 15 20-34 2-16 (17)
71 KOG0473 Leucine-rich repeat pr 95.7 0.00014 3E-09 52.0 -6.5 92 9-100 31-123 (326)
72 smart00370 LRR Leucine-rich re 95.4 0.02 4.2E-07 26.1 2.3 21 88-108 2-22 (26)
73 smart00369 LRR_TYP Leucine-ric 95.4 0.02 4.2E-07 26.1 2.3 21 88-108 2-22 (26)
74 PF13516 LRR_6: Leucine Rich r 88.5 0.12 2.5E-06 22.9 -0.2 18 112-129 2-19 (24)
75 TIGR00864 PCC polycystin catio 87.2 0.49 1.1E-05 45.0 2.6 35 94-128 1-35 (2740)
76 smart00365 LRR_SD22 Leucine-ri 86.8 0.59 1.3E-05 21.4 1.6 16 19-34 2-17 (26)
77 smart00364 LRR_BAC Leucine-ric 86.4 0.46 1E-05 21.7 1.1 17 20-36 3-19 (26)
78 KOG3864 Uncharacterized conser 82.9 0.38 8.2E-06 33.9 -0.0 78 43-120 102-184 (221)
79 smart00368 LRR_RI Leucine rich 79.8 1.3 2.8E-05 20.4 1.2 17 112-128 2-18 (28)
80 KOG3763 mRNA export factor TAP 77.8 2 4.4E-05 34.9 2.5 62 64-126 217-284 (585)
81 KOG4308 LRR-containing protein 77.1 0.067 1.4E-06 42.7 -5.9 111 15-125 168-303 (478)
82 KOG1947 Leucine rich repeat pr 76.1 1.5 3.3E-05 34.4 1.4 14 109-122 292-305 (482)
83 KOG3864 Uncharacterized conser 73.1 1.1 2.3E-05 31.8 -0.1 78 21-98 103-186 (221)
84 KOG4308 LRR-containing protein 71.0 0.081 1.7E-06 42.3 -6.8 14 113-126 263-276 (478)
85 KOG1947 Leucine rich repeat pr 67.9 4.8 0.0001 31.6 2.5 107 14-121 209-330 (482)
86 smart00367 LRR_CC Leucine-rich 59.7 7.4 0.00016 17.3 1.4 16 112-127 2-18 (26)
87 KOG3763 mRNA export factor TAP 58.0 6.3 0.00014 32.2 1.5 12 89-100 271-282 (585)
88 TIGR00864 PCC polycystin catio 49.0 18 0.00039 35.4 3.1 31 2-32 1-32 (2740)
89 KOG4341 F-box protein containi 41.9 20 0.00044 28.5 2.0 111 16-126 291-415 (483)
90 KOG4341 F-box protein containi 29.3 39 0.00085 27.0 1.8 106 16-121 317-435 (483)
No 1
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=5.7e-19 Score=118.45 Aligned_cols=126 Identities=29% Similarity=0.461 Sum_probs=113.2
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~~~~~ 78 (167)
|++.+|+|.++|.+++.+++|+.|++..|++..+|..|+.++.|+.+|+.+|++. .+|..|..|..|+.|+++.|.+.
T Consensus 61 ln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 61 LNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred hhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 4678888999999999999999999999998889999999999999999999888 46888888999999999999999
Q ss_pred ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 79 ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 79 ~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.+|..++++.+++.+.+..|.+-++|.+ ++.+..|+.+++.+|++...
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeec
Confidence 9999999999999999999999999998 68899999999999988743
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-17 Score=111.16 Aligned_cols=140 Identities=30% Similarity=0.495 Sum_probs=119.0
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCC--
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG-- 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~-- 78 (167)
|.+++|.++.+|+.++.+.+|+.|++..|+++.+|..+..+++|+.+++.-|++..+|.+|+.++.|+.|++..|.+.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 457888899899999999999999999999999999999999999999999999888999999999999999999885
Q ss_pred ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC--hhhhccccchHHHHHH
Q 031005 79 ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS--MDQFQQMEGFEEFEAR 141 (167)
Q Consensus 79 ~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~~~~l~~l~~~ 141 (167)
.+|..|..+..++.+++++|.+.-+|+. .+.+++|+.+.+..|.+- ..+.+.+..++++...
T Consensus 118 ~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 118 SLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred cCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 6788888889999999999999999988 688999999999998775 3344455555554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-16 Score=123.39 Aligned_cols=135 Identities=26% Similarity=0.337 Sum_probs=117.9
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.|..| ++++...++|+.|++++|++++++ .+|..+..|+.|.++.|.+..+.+ .|.++++|++|+++.|.+
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 57889999877 677888899999999999999986 678889999999999999998865 788899999999999987
Q ss_pred C-cc---chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccch
Q 031005 78 G-EL---PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGF 135 (167)
Q Consensus 78 ~-~l---~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 135 (167)
. .+ ...|..+++|+.|++.+|++.+++..+|.+++.|.+|++.+|++....+..+..+
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 5 22 4567789999999999999999999999999999999999999987766666655
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.53 E-value=3.3e-14 Score=120.24 Aligned_cols=123 Identities=31% Similarity=0.511 Sum_probs=79.0
Q ss_pred cccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~~ 78 (167)
++++|.+. .+|..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+. .+|..++.+.+|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 45566665 556667777777777777777653 5666677777777777777666 34666666677777777766664
Q ss_pred -ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005 79 -ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 79 -~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
.+|..++.+++|++|++++|.+. .+|.. ++.+++|+.|++++|.+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeee
Confidence 45666666666666666666663 33333 566666666666666554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.52 E-value=1e-14 Score=113.67 Aligned_cols=158 Identities=21% Similarity=0.327 Sum_probs=102.7
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeC------------------------CCCC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSN------------------------NKLK 55 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~------------------------n~~~ 55 (167)
||+++|.+.++ +..|.++++|+.+.+..|.++.+|.......+++.|++.+ |.|+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 57788888877 4457788888888888888777765544434444444444 4444
Q ss_pred ccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh---hc
Q 031005 56 SLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ---FQ 130 (167)
Q Consensus 56 ~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~---~~ 130 (167)
++|. .|..-.++++|++++|+|+.+. ..|..+.+|..+.+++|.++.+|.-+|.++++|+.|++..|++.... +.
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc
Confidence 4432 2333345666667777666552 45666778888888888888888888888888999999888887543 44
Q ss_pred cccchHHHHHHHHHhhhhhcccccceeecC
Q 031005 131 QMEGFEEFEARRRKKFDKQIDSNVMISSKG 160 (167)
Q Consensus 131 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (167)
.+.+++.+...+.+-. .++++++-...+
T Consensus 243 gL~Sl~nlklqrN~I~--kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDIS--KLDDGAFYGLEK 270 (873)
T ss_pred CchhhhhhhhhhcCcc--cccCcceeeecc
Confidence 4555555555554332 244555544443
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.48 E-value=4.2e-14 Score=96.71 Aligned_cols=119 Identities=29% Similarity=0.484 Sum_probs=40.8
Q ss_pred CCCCCCCchhhhCCCCCCEEEeeCCcCcccccccc-CCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchh
Q 031005 5 GNRITSLPDELGQLVRLERLSILGNMLTCLPETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 83 (167)
Q Consensus 5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~ 83 (167)
.+.|..++. +.+...+++|++.+|.|+.+. .++ .+.+|+.|++++|.++.+ +.+..++.|+.|++++|.++.++..
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHH
T ss_pred ccccccccc-ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccc
Confidence 334444433 345557788888888888874 344 577888888988888877 3577788888889988888888655
Q ss_pred H-hcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCCh
Q 031005 84 I-CNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 84 ~-~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+ ..+++|++|++++|.|..+.. ..++.+++|+.|++.+||++.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 5 457888889988888854433 336788888889988888874
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=1e-13 Score=117.35 Aligned_cols=124 Identities=30% Similarity=0.515 Sum_probs=72.3
Q ss_pred CcccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+. .+|..+.++++|++|++++|.+.. +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 355666655 556666667777777777766654 5566666666666666666665 3455566666666666666655
Q ss_pred C-ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005 78 G-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 78 ~-~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+.
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeec
Confidence 4 34555555555555555555552 33332 444555555555555444
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.48 E-value=5.7e-14 Score=96.04 Aligned_cols=124 Identities=27% Similarity=0.435 Sum_probs=59.4
Q ss_pred CcccCCCCCCCchhhh-CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhh-ccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELG-QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI-GSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~-~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~l~~L~~l~l~~~~~~ 78 (167)
|+|.+++|+.|. .+. .+.+|+.|++++|.++.++ .+..++.|++|++++|.++.+++.+ ..+++|+.|++++|.+.
T Consensus 24 L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 24 LNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred cccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 578899998874 354 6889999999999999984 5778999999999999999997655 46899999999999997
Q ss_pred ccc--hhHhcCCCcCEEEccCCcCCCCc---hHHhhCCCCCceEEcccCCCChhh
Q 031005 79 ELP--ASICNLIHLKSLCLNNNNIGQIP---ANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 79 ~l~--~~~~~~~~l~~l~l~~n~l~~~~---~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
.+. ..+..+++|++|++.+|++...+ ..++..+|+|+.|| +.+++..+
T Consensus 102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD--~~~V~~~E 154 (175)
T PF14580_consen 102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD--GQDVTEEE 154 (175)
T ss_dssp SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET--TEETTS-B
T ss_pred ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC--CEEccHHH
Confidence 653 46788999999999999995443 36688999999997 44665443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.47 E-value=6.4e-15 Score=115.92 Aligned_cols=144 Identities=27% Similarity=0.417 Sum_probs=98.3
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
+.+|++.++-..+..++.|+.+.+..|++. .+|+.+-.+..|++||+++|.+.++|..+..-.++..|++++|.|..+
T Consensus 62 ~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 62 MAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI 141 (1255)
T ss_pred hhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC
Confidence 445555555555566666666666666655 367777777777777777777777777777777777777777777777
Q ss_pred chh-HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHHHHHHhhh
Q 031005 81 PAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRRKKFD 147 (167)
Q Consensus 81 ~~~-~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~~~~~~~ 147 (167)
|.. +-++..|-.||+++|++..+|++ ..++..|++|.+++||+.-.....++.+.+|...+-....
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 643 34566677777777777777777 5777777888888888776666666666665555544443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=2.6e-14 Score=107.09 Aligned_cols=124 Identities=38% Similarity=0.566 Sum_probs=104.3
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc-
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP- 81 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~- 81 (167)
+++|.+.-+|..++.+++|+.|+++.|.+..+|..++.+-.||+++++.|+|..+|.-+..+..++.+-.+.|.+++++
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence 4556666666667888899999999999888988888888899999999988888776666666777766778888885
Q ss_pred hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.++.++.+|.++|+.+|.+..+|+. +++|.+++++++++|++...
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred HHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccCCC
Confidence 4588999999999999999999996 79999999999999999843
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.42 E-value=1.3e-14 Score=114.15 Aligned_cols=153 Identities=25% Similarity=0.337 Sum_probs=123.5
Q ss_pred CCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCCCcCCccch
Q 031005 5 GNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQANDNLIGELPA 82 (167)
Q Consensus 5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~~~~~~l~~ 82 (167)
..++..+|..++.+.+|+.|.+.+|++..+-..+..++.|+.++++.|.+. .+|+.+..+..|..++++.|.++++|.
T Consensus 41 rt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 41 RTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred hhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch
Confidence 344556667777777777777777777766666777788888888888776 578888889999999999999999999
Q ss_pred hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh--hhccccchHHHHHHHHHhhhhhccccccee
Q 031005 83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD--QFQQMEGFEEFEARRRKKFDKQIDSNVMIS 157 (167)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 157 (167)
.+....++.+|++++|.|.+||...+-++..|-.||++.|+++.. ....+..++.|...+..-...|+.+-..++
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence 999989999999999999999999999999999999999999854 445688888888887776666665544433
No 12
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.42 E-value=2.2e-14 Score=104.19 Aligned_cols=125 Identities=25% Similarity=0.346 Sum_probs=108.5
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
+|+++|.|+.+..+..-.|.++.|++++|.+..+.+ ++.+++|+.||+++|.++.+..+-..+.+++.|.+++|.+..+
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L 367 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL 367 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh
Confidence 589999999999999899999999999999998854 8889999999999999998755556788999999999999877
Q ss_pred chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.+++.+-+|..||+++|+|..+.. ..++.+|.|.++.+.+||+...
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 567888899999999999965544 3378999999999999999743
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=3.1e-14 Score=106.68 Aligned_cols=126 Identities=34% Similarity=0.573 Sum_probs=82.6
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCC---------------
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYS--------------- 66 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~--------------- 66 (167)
++.+|.++++|+..-++..|+.++...|.++.+|+.++.+.+|..+++.+|++.++| .|.++..
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLP 244 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhH
Confidence 556777777766655577788888888888888888888888888888888888776 4555544
Q ss_pred ---------CCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhc
Q 031005 67 ---------LEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ 130 (167)
Q Consensus 67 ---------L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 130 (167)
+..||+..|.++++|..+.-+.++.++|+++|.++.+|.. ++++ +|+.+-+.|||+.....+
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred HHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchHHHHHH
Confidence 4455555555555555555555555666666666555554 4555 566666666666654333
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=2e-12 Score=100.59 Aligned_cols=121 Identities=36% Similarity=0.563 Sum_probs=80.5
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCC----
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG---- 78 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~---- 78 (167)
+..|.+..||.++.++..|++++++.|+++.+|..+..++ |+.+.+++|+++.+|+.++...+|..++++.|.+.
T Consensus 105 Ly~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps 183 (722)
T KOG0532|consen 105 LYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS 183 (722)
T ss_pred HHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH
Confidence 4455666666666666666666666666666655555444 55555556665555555555555555555555444
Q ss_pred -------------------ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 79 -------------------ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 79 -------------------~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
.+|..+. .-.|..||++.|++..+|.+ |.+|..|++|-+..||+..
T Consensus 184 ql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchh-hhhhhhheeeeeccCCCCC
Confidence 4444444 23577899999999999988 7899999999999999973
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=1.7e-12 Score=105.52 Aligned_cols=138 Identities=25% Similarity=0.335 Sum_probs=107.4
Q ss_pred cccCCCCC-CCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRIT-SLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
.+.+|.++ ...+.+.+..+|+.|++++|.++.+|. .+.++..|+.|++++|++..+|..+..++.|+.|...+|.+..
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee
Confidence 45677777 556667888999999999999999884 5788999999999999999999888888999999999999988
Q ss_pred cchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHH
Q 031005 80 LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEA 140 (167)
Q Consensus 80 l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~ 140 (167)
+| .+..++.++.+|++.|.++.+-.......+.|+.||++||.....+...+..+..+..
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ 504 (1081)
T ss_pred ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhh
Confidence 88 7888899999999999885543321223378999999999865544444444444333
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=5.5e-11 Score=97.63 Aligned_cols=116 Identities=31% Similarity=0.525 Sum_probs=64.4
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhc-------------------
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG------------------- 62 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~------------------- 62 (167)
++++|++..+|..+. ..|+.|++++|+++.+|..+. ++|+.|++++|.++.+|..+.
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPET 322 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcc
Confidence 344444444444332 245666666666655554432 356666666666655443221
Q ss_pred cCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 63 SCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 63 ~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
..++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|..+ .+.|+.|++++|.+..
T Consensus 323 l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 323 LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTN 381 (754)
T ss_pred ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCCC
Confidence 01245555555555555544332 46777777777777776643 3567888888887764
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=2e-12 Score=96.76 Aligned_cols=132 Identities=26% Similarity=0.365 Sum_probs=77.9
Q ss_pred CCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCC-CcCCccch
Q 031005 6 NRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQAND-NLIGELPA 82 (167)
Q Consensus 6 ~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~-~~~~~l~~ 82 (167)
.+++++|..+ .+....+++..|+|+.|| ..|+.+++|+.||+++|.|+++ |++|.++..+..+.+-+ |+|+.+|.
T Consensus 56 ~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3445555432 133566666777777765 4566677777777777777766 55666666665554444 66666653
Q ss_pred -hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHH
Q 031005 83 -SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFE 139 (167)
Q Consensus 83 -~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~ 139 (167)
.|..+.+++.|.+.-|.+.-++..++.+++++..|.+-.|.+.....+.+..+..+.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~ 191 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIK 191 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccc
Confidence 455566666666666666666666666666666666666665544444444444333
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=1.1e-12 Score=102.07 Aligned_cols=135 Identities=30% Similarity=0.464 Sum_probs=108.4
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
.|++.|++.++|..+..+..|+.+.++.|.+..+|..+..+..|++++++.|.++.+|..++.++ |+.+-+++|+++.+
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~l 158 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSL 158 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccC
Confidence 36788999999999999999999999999999999999999999999999999999998887775 88999999999999
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCC----------------------CceEEcccCCCChh--hhccccchH
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKA----------------------LQNISLHNNPISMD--QFQQMEGFE 136 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~----------------------L~~l~l~~n~~~~~--~~~~~~~l~ 136 (167)
|..++...++..+|.+.|.+.++|... ..+.+ |..||++.|++... .+..+..++
T Consensus 159 p~~ig~~~tl~~ld~s~nei~slpsql-~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKNEIQSLPSQL-GYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQ 237 (722)
T ss_pred CcccccchhHHHhhhhhhhhhhchHHh-hhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhhe
Confidence 988887777888888777776666552 33333 55777777777633 344444444
Q ss_pred H
Q 031005 137 E 137 (167)
Q Consensus 137 ~ 137 (167)
.
T Consensus 238 ~ 238 (722)
T KOG0532|consen 238 V 238 (722)
T ss_pred e
Confidence 3
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=8.7e-11 Score=96.49 Aligned_cols=116 Identities=29% Similarity=0.415 Sum_probs=83.4
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++++++.+|..+. +.++.|++++|.++.+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|.+..+
T Consensus 183 L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 183 LRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL 256 (754)
T ss_pred EEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcC
Confidence 3566667777776543 468888888888888876553 478888888888887776543 3688888888888877
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
|..+. .+|+.|++++|.+..+|..+ .++|+.|++++|.++..
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~LP~~l---~~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTL 298 (754)
T ss_pred ChhHh--CCCCEEECcCCccCcccccc---CCCCcEEECCCCccccC
Confidence 76654 36888888888887777643 24678888888877643
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.19 E-value=4.2e-11 Score=98.25 Aligned_cols=106 Identities=31% Similarity=0.396 Sum_probs=76.2
Q ss_pred CCCEEEeeCCcCccccccccC-----------------CCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005 20 RLERLSILGNMLTCLPETIGS-----------------LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l~~~~~~-----------------l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~ 82 (167)
.|++|++++|+++.+|..... ..+|+.|++++|.++.+|.. .++|+.|++++|.+..+|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM 419 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc
Confidence 577888888877766532111 13566677777777666543 2467788888888877765
Q ss_pred hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccc
Q 031005 83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 132 (167)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 132 (167)
.. .+|+.|++++|.++.+|.. +..++.|..+++++|+++......+
T Consensus 420 l~---~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 420 LP---SGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ch---hhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHH
Confidence 32 3677889999999999887 6789999999999999997654443
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=2.7e-12 Score=96.08 Aligned_cols=124 Identities=31% Similarity=0.487 Sum_probs=109.8
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeC-CCCCccch-hhccCCCCCeEEcCCCc
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSN-NKLKSLPE-SIGSCYSLEELQANDNL 76 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~-n~~~~~~~-~~~~l~~L~~l~l~~~~ 76 (167)
+.|..|+|+.||+ +|..+++|+.|+++.|.|+.| |++|.+++++.++.+-+ |+|+.+|. .|.++..++.|.+.-|.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 3577899999965 689999999999999999997 68999999888777766 99999986 78999999999999999
Q ss_pred CCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCC
Q 031005 77 IGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124 (167)
Q Consensus 77 ~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 124 (167)
+..++ ..+..++++..|.+-+|.+..++...+..+.+++.+.+..|+.
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 98775 5788899999999999999999887789999999999988883
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=8.2e-10 Score=89.67 Aligned_cols=105 Identities=30% Similarity=0.461 Sum_probs=77.4
Q ss_pred CCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcCC-ccchhHhcCCCcCEEEccC
Q 031005 21 LERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG-ELPASICNLIHLKSLCLNN 97 (167)
Q Consensus 21 L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~~-~l~~~~~~~~~l~~l~l~~ 97 (167)
++.|++++|.++. +|..+..+++|+.|++++|.+. .+|+.+..+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5677788887774 6777888888888888888877 56777788888888888888775 5677788888888888888
Q ss_pred CcC-CCCchHHhhCCCCCceEEcccCCCC
Q 031005 98 NNI-GQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 98 n~l-~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
|.+ +.+|..+.....++..+++.+|+..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 877 5666654333345667777776543
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.06 E-value=3.2e-11 Score=98.38 Aligned_cols=123 Identities=32% Similarity=0.425 Sum_probs=104.1
Q ss_pred CcccCCCCCCCchh-hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc
Q 031005 1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 1 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
|+|++|++..+|.+ +.++..|+.|++++|+++.+|.....+..|++|...+|.+..+| .+..++.|+.+|++.|.++.
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence 68999999999876 68999999999999999999999999999999999999999998 78899999999999999875
Q ss_pred c--chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 80 L--PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 80 l--~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+ +..... ++|++||+++|....+....+..+.+++..++.-++..
T Consensus 467 ~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 467 VTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred hhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccCCCC
Confidence 4 332222 89999999999976665555777777887777777443
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=2.4e-10 Score=64.92 Aligned_cols=59 Identities=34% Similarity=0.501 Sum_probs=41.4
Q ss_pred CCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 19 VRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 19 ~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|+|++|++++|+++.+| ..|..+++|++|++++|.+..+++ .|..+++|+++++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777777776 466777777777777777777643 567777777777776653
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.04 E-value=8.4e-10 Score=90.73 Aligned_cols=94 Identities=34% Similarity=0.428 Sum_probs=57.6
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeE----------
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEEL---------- 70 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l---------- 70 (167)
|++++++++.+|+.+. ++++.|++.+|+++.+|.. .++|+.|++++|.++.+|.. .++|+.|
T Consensus 206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 206 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHL 277 (788)
T ss_pred EEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhh
Confidence 4567777888877654 3677777777777777642 46677777777777766532 2344444
Q ss_pred ----------EcCCCcCCccchhHhcCCCcCEEEccCCcCCCCch
Q 031005 71 ----------QANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA 105 (167)
Q Consensus 71 ----------~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~ 105 (167)
++.+|.++.+|. ..++|+.|++++|.+..+|.
T Consensus 278 p~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 278 PALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPA 319 (788)
T ss_pred hhchhhcCEEECcCCccccccc---cccccceeECCCCccccCCC
Confidence 444444444433 12456777777776655543
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.03 E-value=1.1e-09 Score=88.85 Aligned_cols=100 Identities=29% Similarity=0.546 Sum_probs=87.3
Q ss_pred CcccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~ 77 (167)
|+|+++.+. .+|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++ .+|+.++.+++|+.|++++|.+
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 467788887 779999999999999999999984 8889999999999999999999 6788999999999999999988
Q ss_pred C-ccchhHhcC-CCcCEEEccCCcC
Q 031005 78 G-ELPASICNL-IHLKSLCLNNNNI 100 (167)
Q Consensus 78 ~-~l~~~~~~~-~~l~~l~l~~n~l 100 (167)
. .+|..++.. .++..+++.+|..
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cccCChHHhhccccCceEEecCCcc
Confidence 6 778877653 4677889988864
No 27
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.01 E-value=5.2e-12 Score=100.92 Aligned_cols=134 Identities=25% Similarity=0.336 Sum_probs=105.5
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCcc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l 80 (167)
++++|.+..+..++.-++.++.|++++|+++.+. ++..++.|..||++.|.+..+|. ...++ +|+.|.+++|.++.+
T Consensus 170 ~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 170 SFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL 247 (1096)
T ss_pred hcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh
Confidence 4677888888888888999999999999999885 78889999999999999988765 22333 499999999998877
Q ss_pred chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChhhhccccchHHH
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQFQQMEGFEEF 138 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l 138 (167)
..+.++.+|..||++.|-+..... ..+..+..|+.|++.|||+.+....+..-.+.+
T Consensus 248 -~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl 305 (1096)
T KOG1859|consen 248 -RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYL 305 (1096)
T ss_pred -hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHh
Confidence 567788999999999998844332 225567789999999999998765554444433
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.99 E-value=9.9e-10 Score=82.01 Aligned_cols=106 Identities=28% Similarity=0.366 Sum_probs=57.8
Q ss_pred CCEEEeeCCcCcc-----ccccccCC-CCCcEEEeeCCCCC-----ccchhhccCCCCCeEEcCCCcCCc-----cchhH
Q 031005 21 LERLSILGNMLTC-----LPETIGSL-RNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE-----LPASI 84 (167)
Q Consensus 21 L~~L~l~~n~l~~-----l~~~~~~l-~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l~~~~~~~-----l~~~~ 84 (167)
|+.|++++|.++. +...+..+ ++|+.+++++|.++ .++..+..+.+|+.|++++|.++. ++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 6666666666551 22334444 56666666666665 223344455566666666666541 22334
Q ss_pred hcCCCcCEEEccCCcCCCCch----HHhhCCCCCceEEcccCCCCh
Q 031005 85 CNLIHLKSLCLNNNNIGQIPA----NLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 85 ~~~~~l~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~~ 126 (167)
...++|+++++++|.++.... ..+..+++|+.|++++|.+..
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 445566666666666642221 123455666677776666653
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.3e-10 Score=84.75 Aligned_cols=121 Identities=23% Similarity=0.342 Sum_probs=99.3
Q ss_pred hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEE
Q 031005 15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC 94 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~ 94 (167)
+..|..|+++|+++|.|+.+..+..-++.++.|+++.|.+..+.. +..+++|+.|++++|.+.++..+-..+-+.+.|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 346778999999999999998888888999999999999998854 7789999999999999988866666778899999
Q ss_pred ccCCcCCCCchHHhhCCCCCceEEcccCCCCh-hhhccccchHHH
Q 031005 95 LNNNNIGQIPANLLKDCKALQNISLHNNPISM-DQFQQMEGFEEF 138 (167)
Q Consensus 95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~l~~l 138 (167)
+++|.+.++.. +..+=+|..||+++|.|.. +....+.++..+
T Consensus 359 La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 359 LAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred hhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHH
Confidence 99999977765 6677789999999999973 333344444433
No 30
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.97 E-value=5.4e-11 Score=77.34 Aligned_cols=105 Identities=22% Similarity=0.304 Sum_probs=55.2
Q ss_pred cccCCCCCCCchhhhC---CCCCCEEEeeCCcCccccccc-cCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcC
Q 031005 2 TLDGNRITSLPDELGQ---LVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~---l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~ 77 (167)
+|+.+++..+++.... ...|...++++|.+..+|..| ..++..+++++.+|.++.+|..+..++.|+.++++.|.+
T Consensus 33 dLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 33 DLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 3444444444444332 223334455566555555444 233455556666666665555555555666666666655
Q ss_pred CccchhHhcCCCcCEEEccCCcCCCCchH
Q 031005 78 GELPASICNLIHLKSLCLNNNNIGQIPAN 106 (167)
Q Consensus 78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~ 106 (167)
...|..+..+.++..|+..+|.+..++-.
T Consensus 113 ~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 113 NAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 55555555555555555555555555544
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=8.6e-10 Score=82.33 Aligned_cols=124 Identities=31% Similarity=0.397 Sum_probs=76.0
Q ss_pred cccCCCCC-----CCchhhhCC-CCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCC-----ccchhhccCC
Q 031005 2 TLDGNRIT-----SLPDELGQL-VRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCY 65 (167)
Q Consensus 2 ~l~~~~i~-----~l~~~~~~l-~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~ 65 (167)
+++++.+. .+...+..+ ++|+.|++++|.++. ++..+..+.+|+.+++++|.++ .++..+..++
T Consensus 114 ~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 193 (319)
T cd00116 114 KLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193 (319)
T ss_pred EeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence 45555554 123345555 778888888887772 3344566677888888887776 2334455556
Q ss_pred CCCeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCCc-hHHhhC----CCCCceEEcccCCCC
Q 031005 66 SLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIP-ANLLKD----CKALQNISLHNNPIS 125 (167)
Q Consensus 66 ~L~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~~-~~~~~~----~~~L~~l~l~~n~~~ 125 (167)
+|+.|++++|.++. ++..+..+++|++|++++|.++... ..+... .+.|+.+++++|.++
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 78888887777652 2334555677788888777775321 111122 357777777777775
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=2.9e-10 Score=64.62 Aligned_cols=57 Identities=40% Similarity=0.570 Sum_probs=28.2
Q ss_pred CCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCc
Q 031005 43 NLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNN 99 (167)
Q Consensus 43 ~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~ 99 (167)
+|+.|++++|.++.+|+ .|..+++|+.+++++|.++.++ ..|..+++|+++++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555543 4444555555555555554442 344444455555554443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=1.7e-10 Score=88.90 Aligned_cols=96 Identities=36% Similarity=0.529 Sum_probs=47.6
Q ss_pred ccCCCCCCCchhhhCCC-CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005 3 LDGNRITSLPDELGQLV-RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 81 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~-~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~ 81 (167)
+.++.+..+++...... +|+.|++++|++..+|..+..++.|+.|++++|.++.+|...+..+.|+.+++++|.+..+|
T Consensus 123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred cCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence 44445555544444442 55555555555555544445555555555555555555444434555555555555555554
Q ss_pred hhHhcCCCcCEEEccCC
Q 031005 82 ASICNLIHLKSLCLNNN 98 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n 98 (167)
........+..+.+++|
T Consensus 203 ~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 203 PEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhhcCC
Confidence 43333333444444444
No 34
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.90 E-value=7e-09 Score=89.58 Aligned_cols=113 Identities=27% Similarity=0.418 Sum_probs=60.8
Q ss_pred CCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCC-CCccchhhccCCCCCeEEcCCC-cCCccchh
Q 031005 6 NRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDN-LIGELPAS 83 (167)
Q Consensus 6 ~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~~L~~l~l~~~-~~~~l~~~ 83 (167)
+.++.+|..+ .+.+|..|++.++.+..++..+..+++|+.++++++. +..+| .+..+++|+.|++.+| .+..+|..
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh
Confidence 3344444443 3455566666666655555555556666666665542 33443 2455566666666655 33455666
Q ss_pred HhcCCCcCEEEccCC-cCCCCchHHhhCCCCCceEEcccC
Q 031005 84 ICNLIHLKSLCLNNN-NIGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 84 ~~~~~~l~~l~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
+..+.+|+.|++++| .+..+|..+ .+++|+.|++++|
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc 714 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGC 714 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence 666666666666654 345555431 4555555555554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=8.7e-10 Score=84.94 Aligned_cols=123 Identities=40% Similarity=0.545 Sum_probs=87.4
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++|.+..+|..+..++.|+.|++++|+++.+|......+.|+.+++++|.++.+|........|+++.+++|.+...
T Consensus 145 L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~ 224 (394)
T COG4886 145 LDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224 (394)
T ss_pred ccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec
Confidence 46778888888777888899999999999988888776677888888888888888876554455567776666633222
Q ss_pred -----------------------chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 81 -----------------------PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 81 -----------------------~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+..++.++.++.+++++|.+..++. ++....++.+++++|.+.
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 2334445556666777776666665 556666777777776665
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.86 E-value=1.8e-08 Score=87.05 Aligned_cols=110 Identities=26% Similarity=0.407 Sum_probs=71.5
Q ss_pred CCCchhhhCCCCCCEEEeeCC-cCccccccccCCCCCcEEEeeCCC-CCccchhhccCCCCCeEEcCCCcCCccchhHhc
Q 031005 9 TSLPDELGQLVRLERLSILGN-MLTCLPETIGSLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDNLIGELPASICN 86 (167)
Q Consensus 9 ~~l~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~ 86 (167)
..+|.++.++++|+.|++++| .+..+|... .+++|+.|++++|. +..+|.. ..+|+.|++++|.++.+|..+..
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhc
Confidence 356666677777777777765 355565544 56667777777653 2233322 34677777877777777777777
Q ss_pred CCCcCEEEccCC-cCCCCchHHhhCCCCCceEEcccCC
Q 031005 87 LIHLKSLCLNNN-NIGQIPANLLKDCKALQNISLHNNP 123 (167)
Q Consensus 87 ~~~l~~l~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~ 123 (167)
+++|+.|++++| .+..++.. ...++.|+.++++++.
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~-~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcc-cccccCCCeeecCCCc
Confidence 888888888774 45666654 4566677777766653
No 37
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.71 E-value=2.5e-08 Score=68.89 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=67.5
Q ss_pred CCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhc-cCCCCCeEEcCCCcCCccc--hhHhcCCCcCEEE
Q 031005 18 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIG-SCYSLEELQANDNLIGELP--ASICNLIHLKSLC 94 (167)
Q Consensus 18 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~~l~ 94 (167)
+.+...+|+++|.+..+ +.|..++.|.+|.+.+|+|+++.+.+. -++.|..|.+.+|.+..+. ..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 33456677777776655 445667777777777777777755443 3556777777777776552 3556677777777
Q ss_pred ccCCcCCCCch---HHhhCCCCCceEEccc
Q 031005 95 LNNNNIGQIPA---NLLKDCKALQNISLHN 121 (167)
Q Consensus 95 l~~n~l~~~~~---~~~~~~~~L~~l~l~~ 121 (167)
+-+|++..... .++-.+|++++||+++
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777743322 3455677777777654
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.63 E-value=4.7e-09 Score=68.41 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=98.6
Q ss_pred CCCEEEeeCCcCccccc---cccCCCCCcEEEeeCCCCCccchhhcc-CCCCCeEEcCCCcCCccchhHhcCCCcCEEEc
Q 031005 20 RLERLSILGNMLTCLPE---TIGSLRNLVLLNVSNNKLKSLPESIGS-CYSLEELQANDNLIGELPASICNLIHLKSLCL 95 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l~~---~~~~l~~L~~l~l~~n~~~~~~~~~~~-l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l 95 (167)
.+..++++.|++..+++ .+.....|+.+++++|.+..+|+.|.. .+.++.+++++|.+..+|..+..++.|+.+++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 35677888888876654 345567788889999999999888755 45889999999999999999999999999999
Q ss_pred cCCcCCCCchHHhhCCCCCceEEcccCCCChhhhcc-ccchHHHHHHHHHhhhh
Q 031005 96 NNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQ-MEGFEEFEARRRKKFDK 148 (167)
Q Consensus 96 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~l~~l~~~~~~~~~~ 148 (167)
+.|++...|.-++. +.++-.|+..+|.+...+.+. .+.+..+...+...+..
T Consensus 108 ~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred ccCccccchHHHHH-HHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 99999888887544 888889998888777554443 34556665555555443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=9.2e-09 Score=79.92 Aligned_cols=121 Identities=31% Similarity=0.407 Sum_probs=87.5
Q ss_pred cCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchh
Q 031005 4 DGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS 83 (167)
Q Consensus 4 ~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~ 83 (167)
..+.|.++-..+..+.+++.+++.+|++..+...+..+.+|+++++++|.|+.+ ..+..++.|+.|++.+|.+..+. .
T Consensus 80 ~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~-~ 157 (414)
T KOG0531|consen 80 RQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDIS-G 157 (414)
T ss_pred chhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhcc-C
Confidence 344444433446677888888888888888766577788888888888888876 34556666888888888887663 2
Q ss_pred HhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005 84 ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+..+..++.+++++|.+..+.. . ...+..+..+++.+|.+...
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 4446788888888888877655 2 35677788888888877643
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=1.3e-09 Score=87.56 Aligned_cols=123 Identities=21% Similarity=0.242 Sum_probs=100.0
Q ss_pred CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEcc
Q 031005 17 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLN 96 (167)
Q Consensus 17 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~ 96 (167)
.+..|.+.++++|.+..+..++.-++.++.|++++|++..+. .+..+++|+.||++.|.++.+|.--.--+.|..|.++
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 355778889999999988888888999999999999999885 7889999999999999999887633333469999999
Q ss_pred CCcCCCCchHHhhCCCCCceEEcccCCCChh-hhccccchHHHHHHH
Q 031005 97 NNNIGQIPANLLKDCKALQNISLHNNPISMD-QFQQMEGFEEFEARR 142 (167)
Q Consensus 97 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~l~~l~~~~ 142 (167)
+|.++++.. +..+.+|+.||++.|-+..+ ....++.+..|...+
T Consensus 241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 999998877 78999999999999999865 233444444444443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=8.8e-08 Score=80.32 Aligned_cols=117 Identities=28% Similarity=0.340 Sum_probs=91.6
Q ss_pred CCCCCCchhhhCCCCCCEEEeeCCc--Ccccc-ccccCCCCCcEEEeeCC-CCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005 6 NRITSLPDELGQLVRLERLSILGNM--LTCLP-ETIGSLRNLVLLNVSNN-KLKSLPESIGSCYSLEELQANDNLIGELP 81 (167)
Q Consensus 6 ~~i~~l~~~~~~l~~L~~L~l~~n~--l~~l~-~~~~~l~~L~~l~l~~n-~~~~~~~~~~~l~~L~~l~l~~~~~~~l~ 81 (167)
+.+..++.+. ..+.|++|-+..|. +..++ ..|..++.|.+||+++| .+..+|+.++.+-+||+|++.++.+..+|
T Consensus 533 ~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP 611 (889)
T KOG4658|consen 533 NKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP 611 (889)
T ss_pred cchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc
Confidence 3444444432 44578899999886 55665 45788999999999976 66688999999999999999999999999
Q ss_pred hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCC
Q 031005 82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNP 123 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 123 (167)
..++++..|.+|++..+.-...++.+...+.+|+++.+-...
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999999998887533335556668899998887765
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=1.7e-07 Score=49.42 Aligned_cols=38 Identities=39% Similarity=0.585 Sum_probs=22.7
Q ss_pred CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc
Q 031005 20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL 57 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~ 57 (167)
+|++|++++|+++.+|+.+..+++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45666666666666665566666666666666666544
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.52 E-value=1.2e-07 Score=65.62 Aligned_cols=129 Identities=22% Similarity=0.417 Sum_probs=94.2
Q ss_pred CCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhc-CCCcCEEEcc
Q 031005 18 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN-LIHLKSLCLN 96 (167)
Q Consensus 18 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~-~~~l~~l~l~ 96 (167)
...-+.+++.+.++..+...-.-+.+...+|+++|.+..+ +.|..++.|..|.+++|+|+.+...+.. ++++..|.+.
T Consensus 18 ~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 18 SVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred hccccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3346777888887776544223346788999999998876 4577889999999999999988554543 5789999999
Q ss_pred CCcC---CCCchHHhhCCCCCceEEcccCCCChhh------hccccchHHHHHHHHHhhhhh
Q 031005 97 NNNI---GQIPANLLKDCKALQNISLHNNPISMDQ------FQQMEGFEEFEARRRKKFDKQ 149 (167)
Q Consensus 97 ~n~l---~~~~~~~~~~~~~L~~l~l~~n~~~~~~------~~~~~~l~~l~~~~~~~~~~~ 149 (167)
+|.+ +.+.+ +..||+|+.|.+-+|+++... ...++.++.|+..++...++.
T Consensus 97 nNsi~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~ 156 (233)
T KOG1644|consen 97 NNSIQELGDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKERE 156 (233)
T ss_pred Ccchhhhhhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHH
Confidence 9988 44444 789999999999999998443 334455555555555444443
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.43 E-value=4.3e-07 Score=47.86 Aligned_cols=38 Identities=34% Similarity=0.553 Sum_probs=20.5
Q ss_pred CCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 43 NLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 43 ~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
+|++|++++|.++.+|+.+..+++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45556666666665555555555555555555555544
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=7.8e-08 Score=74.78 Aligned_cols=119 Identities=26% Similarity=0.369 Sum_probs=96.0
Q ss_pred CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEcc
Q 031005 17 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLN 96 (167)
Q Consensus 17 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~ 96 (167)
.+..+..+.+..|.+..+-..+..+.++..+++.+|.+..+...+..+++|+.+++++|.|+.+ ..+..++.|..|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheec
Confidence 3455666667888888765668889999999999999998855578899999999999999887 446667779999999
Q ss_pred CCcCCCCchHHhhCCCCCceEEcccCCCChhhh---ccccchHHH
Q 031005 97 NNNIGQIPANLLKDCKALQNISLHNNPISMDQF---QQMEGFEEF 138 (167)
Q Consensus 97 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~l 138 (167)
+|.+..+.. +..++.|+.+++++|.+..... ..+..+..+
T Consensus 149 ~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 149 GNLISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEEL 191 (414)
T ss_pred cCcchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHH
Confidence 999998877 6779999999999999986654 444444433
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.3e-07 Score=72.12 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=18.1
Q ss_pred hCCCCCCEEEeeCCcCccc---cccccCCCCCcEEEeeCCCCC
Q 031005 16 GQLVRLERLSILGNMLTCL---PETIGSLRNLVLLNVSNNKLK 55 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~l~~l---~~~~~~l~~L~~l~l~~n~~~ 55 (167)
..+++++.|+++.|-+... -.-...+++|+.|+++.|++.
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 3455555555555544421 122234445555555555444
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.4e-07 Score=69.93 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=39.9
Q ss_pred CCCCCCEEEeeCCcCcc--ccccccCCCCCcEEEeeCCC-CCccchhhccCCCCCeEEcCCCcCCccc--hhHhcCCCcC
Q 031005 17 QLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNK-LKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLK 91 (167)
Q Consensus 17 ~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~ 91 (167)
.+++++.|.++.|+++. +...+..++++..|++..|. +........-+..|+.|++++|.+-.++ ...+.++.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 45566666666666652 33334445555555555552 1111111222344555555555544333 2334445555
Q ss_pred EEEccCCcC
Q 031005 92 SLCLNNNNI 100 (167)
Q Consensus 92 ~l~l~~n~l 100 (167)
.++++.+.+
T Consensus 275 ~Lnls~tgi 283 (505)
T KOG3207|consen 275 QLNLSSTGI 283 (505)
T ss_pred hhhccccCc
Confidence 555555544
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.09 E-value=8.6e-07 Score=65.94 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=57.5
Q ss_pred hhCCCCCCEEEeeCCcCcc--c---cccccCCCCCcEEEeeCCCCCccc--------------hhhccCCCCCeEEcCCC
Q 031005 15 LGQLVRLERLSILGNMLTC--L---PETIGSLRNLVLLNVSNNKLKSLP--------------ESIGSCYSLEELQANDN 75 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~--l---~~~~~~l~~L~~l~l~~n~~~~~~--------------~~~~~l~~L~~l~l~~~ 75 (167)
+...++|+.+++++|.+.. + ...+.+...|+.|.+.+|.+.... .....-+.|+.+...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3455566667777665542 1 122344556666666666555210 11122345666666666
Q ss_pred cCCcc-----chhHhcCCCcCEEEccCCcCCC----CchHHhhCCCCCceEEcccCCCC
Q 031005 76 LIGEL-----PASICNLIHLKSLCLNNNNIGQ----IPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 76 ~~~~l-----~~~~~~~~~l~~l~l~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
++..- ...++..+.++.+.+..|.|.. .-...+..+++|++|++..|.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 55422 2244455566666666665511 12233566666666666666665
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=1.1e-06 Score=65.39 Aligned_cols=126 Identities=23% Similarity=0.220 Sum_probs=77.9
Q ss_pred CcccCCCCC-CCchh----hhCCCCCCEEEeeCCcCcccc-----c---------cccCCCCCcEEEeeCCCCCc-----
Q 031005 1 MTLDGNRIT-SLPDE----LGQLVRLERLSILGNMLTCLP-----E---------TIGSLRNLVLLNVSNNKLKS----- 56 (167)
Q Consensus 1 L~l~~~~i~-~l~~~----~~~l~~L~~L~l~~n~l~~l~-----~---------~~~~l~~L~~l~l~~n~~~~----- 56 (167)
++|+.|-+. +.++. +.++..|+.|.+.+|.+.... . -...-+.|+++...+|++..
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence 456666665 33332 456777778888877766221 1 12334667777777777662
Q ss_pred cchhhccCCCCCeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCC----chHHhhCCCCCceEEcccCCCCh
Q 031005 57 LPESIGSCYSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQI----PANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 57 ~~~~~~~l~~L~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+...|..++.|..+.+..|.|.. +...+..+++|++||+++|.++.. -..++..+++|+.++++.+.++.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 23456666777777777776641 234666777777777777777322 22345666677777777777763
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.00 E-value=6.1e-06 Score=69.56 Aligned_cols=108 Identities=24% Similarity=0.342 Sum_probs=89.4
Q ss_pred hCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCC--CCccchh-hccCCCCCeEEcCCC-cCCccchhHhcCCCcC
Q 031005 16 GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNK--LKSLPES-IGSCYSLEELQANDN-LIGELPASICNLIHLK 91 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~--~~~~~~~-~~~l~~L~~l~l~~~-~~~~l~~~~~~~~~l~ 91 (167)
..+...+.+.+.+|.+..++..... +.|++|-+..|. +..++.. |..++.|+.||+++| .+..+|..++.+-+|+
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4567788888889988877654433 378899899986 5666554 678999999999987 5678999999999999
Q ss_pred EEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 92 SLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 92 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+|+++++.+..+|.. ++.+..|.+|++..+...
T Consensus 599 yL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred cccccCCCccccchH-HHHHHhhheecccccccc
Confidence 999999999999998 789999999999987643
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=65.68 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=88.5
Q ss_pred hCCCCCCEEEeeCCcCcc--ccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc--hhHhcCCCcC
Q 031005 16 GQLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP--ASICNLIHLK 91 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~ 91 (167)
..+|.|+.|.+.+-.+.. ......++++|..||+++++++.+ .+++.+++|+.|.+.+=.+.... ..+.++.+|+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 468999999999987764 334457789999999999999887 67888999999988777776432 4678899999
Q ss_pred EEEccCCcCCCCch------HHhhCCCCCceEEcccCCCChhhhc
Q 031005 92 SLCLNNNNIGQIPA------NLLKDCKALQNISLHNNPISMDQFQ 130 (167)
Q Consensus 92 ~l~l~~n~l~~~~~------~~~~~~~~L~~l~l~~n~~~~~~~~ 130 (167)
+||++.......+. +....+|.|+.||.+++.+.....+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 99999887644332 1135689999999999998855433
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=6e-06 Score=60.71 Aligned_cols=77 Identities=27% Similarity=0.342 Sum_probs=57.8
Q ss_pred CcccCCCCC---CCchhhhCCCCCCEEEeeCCcCccccccc-cCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCC
Q 031005 1 MTLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPETI-GSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQAND 74 (167)
Q Consensus 1 L~l~~~~i~---~l~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~ 74 (167)
+||.+|.|+ ++..-+.++|.|++|+++.|+++.....+ .+..+|.++.+.+..+. .+......++.+++++++.
T Consensus 76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 578888887 45455689999999999999988644444 57788999999988776 3344556777888888777
Q ss_pred CcC
Q 031005 75 NLI 77 (167)
Q Consensus 75 ~~~ 77 (167)
|.+
T Consensus 156 N~~ 158 (418)
T KOG2982|consen 156 NSL 158 (418)
T ss_pred chh
Confidence 733
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00015 Score=56.12 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=17.5
Q ss_pred CcCEEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005 89 HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 89 ~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
+|++|++++|.....|.. -..+|+.|.++.+
T Consensus 157 SLk~L~Is~c~~i~LP~~---LP~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNIILPEK---LPESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcccCccc---ccccCcEEEeccc
Confidence 566677776665444432 1245666666654
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.73 E-value=2.3e-05 Score=56.27 Aligned_cols=102 Identities=26% Similarity=0.316 Sum_probs=67.2
Q ss_pred hCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCC--CCC-ccchhhccCCCCCeEEcCCCcCCccc--hhHhcCCCc
Q 031005 16 GQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN--KLK-SLPESIGSCYSLEELQANDNLIGELP--ASICNLIHL 90 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n--~~~-~~~~~~~~l~~L~~l~l~~~~~~~l~--~~~~~~~~l 90 (167)
..+..++.+.+.+..++.+ ..+..+++|+.|.++.| +++ .++.....+++|+++++++|+++.+. ..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 4455666666666666554 34556778888888888 444 33333344588889999888887542 345667778
Q ss_pred CEEEccCCcCCCC---chHHhhCCCCCceEE
Q 031005 91 KSLCLNNNNIGQI---PANLLKDCKALQNIS 118 (167)
Q Consensus 91 ~~l~l~~n~l~~~---~~~~~~~~~~L~~l~ 118 (167)
..|++.+|+.... ...+|.-+++|+.++
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 8888888877443 235677777777665
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=3.2e-06 Score=61.56 Aligned_cols=105 Identities=28% Similarity=0.399 Sum_probs=80.4
Q ss_pred CCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch--hHhcCCCcCEEEc
Q 031005 18 LVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA--SICNLIHLKSLCL 95 (167)
Q Consensus 18 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~--~~~~~~~l~~l~l 95 (167)
+.+...|++.+|.++.| .-...++.|++|.++-|+|+.+ ..+..|..|++|+|..|.|.++.. -+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45567788888888865 3346788999999999999988 447789999999999999987743 4578899999999
Q ss_pred cCCcC-CCC----chHHhhCCCCCceEEcccCCCCh
Q 031005 96 NNNNI-GQI----PANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 96 ~~n~l-~~~----~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
..|+= +.- ...++..+|+|+.|| +-+++.
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~Vte 129 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTE 129 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc--CccccH
Confidence 99986 222 235678889999886 445553
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=6e-06 Score=60.18 Aligned_cols=85 Identities=28% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEc
Q 031005 41 LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISL 119 (167)
Q Consensus 41 l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l 119 (167)
+.+...|+..+|.++.+ .....|+.|+.|.|+-|.|+.+ ..+..+++|+.|+|..|.|.++.. .-+.++++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45566778888888866 3456799999999999999988 557888999999999999987765 44789999999999
Q ss_pred ccCCCChh
Q 031005 120 HNNPISMD 127 (167)
Q Consensus 120 ~~n~~~~~ 127 (167)
..||-+..
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 99998743
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00033 Score=54.26 Aligned_cols=99 Identities=26% Similarity=0.341 Sum_probs=61.6
Q ss_pred hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCC-CCCccchhhccCCCCCeEEcCCC-cCCccchhHhcCCCcCE
Q 031005 15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNN-KLKSLPESIGSCYSLEELQANDN-LIGELPASICNLIHLKS 92 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~l~~L~~l~l~~~-~~~~l~~~~~~~~~l~~ 92 (167)
+..+.+++.|++++|.++.+|. -..+|+.|.+.+| .+..+|..+ ..+|++|++.+| .+..+|. +|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 3456788899999888888872 1246888888774 555566544 247888888877 5555554 3555
Q ss_pred EEccCCc---CCCCchHHhhC------------------CCCCceEEcccCCCC
Q 031005 93 LCLNNNN---IGQIPANLLKD------------------CKALQNISLHNNPIS 125 (167)
Q Consensus 93 l~l~~n~---l~~~~~~~~~~------------------~~~L~~l~l~~n~~~ 125 (167)
|++..+. +..+|..+ .. .++|+.|+++++...
T Consensus 117 L~L~~n~~~~L~~LPssL-k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGL-TSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred EEeCCCCCcccccCcchH-hheeccccccccccccccccCCcccEEEecCCCcc
Confidence 5554443 24444431 11 146788888876643
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00013 Score=60.22 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=69.4
Q ss_pred hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccc--hhhccCCCCCeEEcCCCcCCccch-------hHh
Q 031005 15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP--ESIGSCYSLEELQANDNLIGELPA-------SIC 85 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~--~~~~~l~~L~~l~l~~~~~~~l~~-------~~~ 85 (167)
..++|+|..||+++++++.+ ..+..+++|++|.+.+-.+.... ..+..+++|+.||++.......+. .-.
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 46899999999999999988 77788999999999988887543 356789999999999887654332 223
Q ss_pred cCCCcCEEEccCCcC
Q 031005 86 NLIHLKSLCLNNNNI 100 (167)
Q Consensus 86 ~~~~l~~l~l~~n~l 100 (167)
.++.|+.||.+++.+
T Consensus 248 ~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDI 262 (699)
T ss_pred cCccccEEecCCcch
Confidence 478999999999987
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.30 E-value=0.00092 Score=43.14 Aligned_cols=103 Identities=20% Similarity=0.377 Sum_probs=61.8
Q ss_pred hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCc
Q 031005 14 ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL 90 (167)
Q Consensus 14 ~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l 90 (167)
.|....+|+.+.+.. .+..+. ..|..+.+++.+.+..+ +..++. .|..+++++.+.+.. .+..++ ..+..+.++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 467777888888874 566775 56788888999988774 777755 567777899999865 454443 356668889
Q ss_pred CEEEccCCcCCCCchHHhhCCCCCceEEccc
Q 031005 91 KSLCLNNNNIGQIPANLLKDCKALQNISLHN 121 (167)
Q Consensus 91 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 121 (167)
+.+++..+ +..++...+..+ .++.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 99998765 667777667777 888888765
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.17 E-value=0.0014 Score=42.25 Aligned_cols=103 Identities=25% Similarity=0.478 Sum_probs=57.3
Q ss_pred CCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hh
Q 031005 8 ITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-AS 83 (167)
Q Consensus 8 i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~ 83 (167)
+..++ ..|..+..++.+.+..+ +..++ ..|...++++.+.+.. .+..++. .|..+..++.+.+..+ +..++ ..
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~ 99 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS 99 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTT
T ss_pred eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhh
Confidence 34442 34778889999999885 77776 5678888899999976 6666644 5677999999999775 65554 35
Q ss_pred HhcCCCcCEEEccCCcCCCCchHHhhCCCCCc
Q 031005 84 ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 115 (167)
Q Consensus 84 ~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~ 115 (167)
+.+. .++.+.+.. .+..++..+|.++++|.
T Consensus 100 f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 100 FSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--T--EEE-TT-B-SS----GGG------
T ss_pred hcCC-CceEEEECC-CccEECCccccccccCC
Confidence 5555 899998876 77778888888887763
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=3e-05 Score=57.15 Aligned_cols=108 Identities=25% Similarity=0.327 Sum_probs=52.6
Q ss_pred hhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCC-CCCcc--chhhccCCCCCeEEcCCCcCC--ccchhHhcC-
Q 031005 15 LGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNN-KLKSL--PESIGSCYSLEELQANDNLIG--ELPASICNL- 87 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n-~~~~~--~~~~~~l~~L~~l~l~~~~~~--~l~~~~~~~- 87 (167)
+..+.+|+-|.+.++.+.. +...+..-..|..++++.+ .+++. .-.+.+++.|..|+++.+.+. .+-..+...
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3455555556666665553 4444555566666666654 34422 123455666666666666432 111111111
Q ss_pred CCcCEEEccCCcC---CCCchHHhhCCCCCceEEcccC
Q 031005 88 IHLKSLCLNNNNI---GQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 88 ~~l~~l~l~~n~l---~~~~~~~~~~~~~L~~l~l~~n 122 (167)
.+++.|+++|+.= ...-.....+++.+.+||++.+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 2555555555531 1111222455666666666654
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00053 Score=49.45 Aligned_cols=89 Identities=27% Similarity=0.324 Sum_probs=62.8
Q ss_pred ccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCC---ccchhHhcCCCcCEEEccCCcC---CCCchHH
Q 031005 34 LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIG---ELPASICNLIHLKSLCLNNNNI---GQIPANL 107 (167)
Q Consensus 34 l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~---~l~~~~~~~~~l~~l~l~~n~l---~~~~~~~ 107 (167)
+....-.+..|+.+.+.+..++.+ ..+..+++|++|.++.|... .++.-...+++++++++++|.+ .++.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-- 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-- 111 (260)
T ss_pred cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--
Confidence 333344455677777777777655 34567889999999999443 3333344459999999999988 45554
Q ss_pred hhCCCCCceEEcccCCCC
Q 031005 108 LKDCKALQNISLHNNPIS 125 (167)
Q Consensus 108 ~~~~~~L~~l~l~~n~~~ 125 (167)
...+.+|..|++..+..+
T Consensus 112 l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhcchhhhhcccCCcc
Confidence 567778889998888776
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00016 Score=53.38 Aligned_cols=121 Identities=20% Similarity=0.167 Sum_probs=66.3
Q ss_pred cccCCCCC-CCchhhhCCCCCCEEEeeCCc-Ccc--ccccccCCCCCcEEEeeCCCCCc--cchhhcc-CCCCCeEEcCC
Q 031005 2 TLDGNRIT-SLPDELGQLVRLERLSILGNM-LTC--LPETIGSLRNLVLLNVSNNKLKS--LPESIGS-CYSLEELQAND 74 (167)
Q Consensus 2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~-l~~--l~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~-l~~L~~l~l~~ 74 (167)
.+.++++. .+...++....|+.|+++++. +++ +.--+..++.|+.|+++.|.+.. +.-.+.. -.+|+.|+++|
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence 34555555 455667888889999999874 664 23345777888888888886651 1111111 23466666666
Q ss_pred CcCC----ccchhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccC
Q 031005 75 NLIG----ELPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 75 ~~~~----~l~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
++-. .+..-..+++++.+||+++|- ++.---.++...+-|+++.++.+
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 5221 122223455666666665552 32211222444455555555544
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.88 E-value=0.0005 Score=30.34 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=10.9
Q ss_pred CCEEEeeCCcCcccccccc
Q 031005 21 LERLSILGNMLTCLPETIG 39 (167)
Q Consensus 21 L~~L~l~~n~l~~l~~~~~ 39 (167)
|++|++++|+++.+|+.|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4566666666665555443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.59 E-value=0.0032 Score=46.22 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=18.2
Q ss_pred hCCCCCCEEEeeCCcCcc-cc----ccccCCCCCcEEEeeCCCCC
Q 031005 16 GQLVRLERLSILGNMLTC-LP----ETIGSLRNLVLLNVSNNKLK 55 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~l~~-l~----~~~~~l~~L~~l~l~~n~~~ 55 (167)
..+|+|+.++++.|.+.. .| +.+.+-..|..|.+++|.+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 345555555555554442 21 12333444555555555444
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.55 E-value=0.001 Score=29.31 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=11.5
Q ss_pred CcEEEeeCCCCCccchhhc
Q 031005 44 LVLLNVSNNKLKSLPESIG 62 (167)
Q Consensus 44 L~~l~l~~n~~~~~~~~~~ 62 (167)
|+.|++++|.++.+|+.|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5666666666666655543
No 67
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.36 E-value=4.5e-05 Score=54.37 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=58.4
Q ss_pred cccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCce
Q 031005 37 TIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQN 116 (167)
Q Consensus 37 ~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~ 116 (167)
.+......+.||++.|.+..+...|+-+..+..++++.|.+..+|..++....+.++++..|.+...|.. +...++++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc-ccccCCcch
Confidence 4445556666666666666555556556666666777666666666666666666667667766666665 566666777
Q ss_pred EEcccCCCChhh
Q 031005 117 ISLHNNPISMDQ 128 (167)
Q Consensus 117 l~l~~n~~~~~~ 128 (167)
+++.+|++....
T Consensus 116 ~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 116 NEQKKTEFFRKL 127 (326)
T ss_pred hhhccCcchHHH
Confidence 777777665443
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0047 Score=45.92 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=68.6
Q ss_pred CcccCCCCCCCchhh-hCCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCcc--ch----hhc---------
Q 031005 1 MTLDGNRITSLPDEL-GQLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSL--PE----SIG--------- 62 (167)
Q Consensus 1 L~l~~~~i~~l~~~~-~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~--~~----~~~--------- 62 (167)
|++++|++..-...+ ....+|+.|.+.+..+. .....+..++.++.+.++.|.+..+ .+ .+.
T Consensus 102 LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~ 181 (418)
T KOG2982|consen 102 LNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQL 181 (418)
T ss_pred eeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcC
Confidence 567888876322222 45678888888888765 3555667778888888888755522 11 010
Q ss_pred ---------------cCCCCCeEEcCCCcCCccc--hhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCC
Q 031005 63 ---------------SCYSLEELQANDNLIGELP--ASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPI 124 (167)
Q Consensus 63 ---------------~l~~L~~l~l~~~~~~~l~--~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~ 124 (167)
-++++..+-++.+.+.... ...-.++.+--|+++.+.|.+... ..+++++.++.+.++.+|+
T Consensus 182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 0133333344444333221 122233444455666666644332 3356667777777777766
Q ss_pred C
Q 031005 125 S 125 (167)
Q Consensus 125 ~ 125 (167)
.
T Consensus 262 ~ 262 (418)
T KOG2982|consen 262 S 262 (418)
T ss_pred c
Confidence 4
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.20 E-value=0.0059 Score=44.87 Aligned_cols=126 Identities=20% Similarity=0.220 Sum_probs=89.6
Q ss_pred cccCCCCC-CCchh----hhCCCCCCEEEeeCCcCccccc-----c---------ccCCCCCcEEEeeCCCCCccch---
Q 031005 2 TLDGNRIT-SLPDE----LGQLVRLERLSILGNMLTCLPE-----T---------IGSLRNLVLLNVSNNKLKSLPE--- 59 (167)
Q Consensus 2 ~l~~~~i~-~l~~~----~~~l~~L~~L~l~~n~l~~l~~-----~---------~~~l~~L~~l~l~~n~~~~~~~--- 59 (167)
+|+.|.+. ..|.. +++-..|..|.+++|.+..+.. + ...-+.|+++...+|++...|.
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH
Confidence 57777776 34433 5778889999999998774421 1 1235789999999998885432
Q ss_pred --hhccCCCCCeEEcCCCcCCcc------chhHhcCCCcCEEEccCCcCCCCc----hHHhhCCCCCceEEcccCCCChh
Q 031005 60 --SIGSCYSLEELQANDNLIGEL------PASICNLIHLKSLCLNNNNIGQIP----ANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 60 --~~~~l~~L~~l~l~~~~~~~l------~~~~~~~~~l~~l~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.+.....|+.+.+..|.|..- -..++.+.+|.+||++.|.++... ..++-.++.|+.|.+..+.++..
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 334456799999999988621 135567889999999999884332 34455677789999998888754
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.93 E-value=0.006 Score=25.03 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=6.3
Q ss_pred CCCEEEeeCCcCccc
Q 031005 20 RLERLSILGNMLTCL 34 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l 34 (167)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555444
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.69 E-value=0.00014 Score=52.00 Aligned_cols=92 Identities=23% Similarity=0.274 Sum_probs=80.5
Q ss_pred CCCc-hhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcC
Q 031005 9 TSLP-DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNL 87 (167)
Q Consensus 9 ~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~ 87 (167)
.++| ..+..+.+.+.||++.|++..+-..|..+..+..++++.|.+..+|..+.....++.+++..|.....|..++..
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~ 110 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE 110 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence 3444 346788889999999999888878888888999999999999999999988888999999999998899999999
Q ss_pred CCcCEEEccCCcC
Q 031005 88 IHLKSLCLNNNNI 100 (167)
Q Consensus 88 ~~l~~l~l~~n~l 100 (167)
++++++++-+|++
T Consensus 111 ~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 111 PHPKKNEQKKTEF 123 (326)
T ss_pred CCcchhhhccCcc
Confidence 9999999999986
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.39 E-value=0.02 Score=26.09 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=13.8
Q ss_pred CCcCEEEccCCcCCCCchHHh
Q 031005 88 IHLKSLCLNNNNIGQIPANLL 108 (167)
Q Consensus 88 ~~l~~l~l~~n~l~~~~~~~~ 108 (167)
++|++|++++|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456667777777776666554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.39 E-value=0.02 Score=26.09 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=13.8
Q ss_pred CCcCEEEccCCcCCCCchHHh
Q 031005 88 IHLKSLCLNNNNIGQIPANLL 108 (167)
Q Consensus 88 ~~l~~l~l~~n~l~~~~~~~~ 108 (167)
++|++|++++|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456667777777776666554
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.54 E-value=0.12 Score=22.93 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=10.0
Q ss_pred CCCceEEcccCCCChhhh
Q 031005 112 KALQNISLHNNPISMDQF 129 (167)
Q Consensus 112 ~~L~~l~l~~n~~~~~~~ 129 (167)
++|+.|++++|.++.+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 466777777777665543
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.19 E-value=0.49 Score=44.95 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=28.7
Q ss_pred EccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 94 CLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 94 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
||++|.|..++..+|..+++|+.|+|++||+.|+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence 57788888888888888888888888888888763
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.82 E-value=0.59 Score=21.37 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=8.8
Q ss_pred CCCCEEEeeCCcCccc
Q 031005 19 VRLERLSILGNMLTCL 34 (167)
Q Consensus 19 ~~L~~L~l~~n~l~~l 34 (167)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455566666655543
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.38 E-value=0.46 Score=21.73 Aligned_cols=17 Identities=47% Similarity=0.712 Sum_probs=9.3
Q ss_pred CCCEEEeeCCcCccccc
Q 031005 20 RLERLSILGNMLTCLPE 36 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l~~ 36 (167)
+|+.|+.++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.94 E-value=0.38 Score=33.95 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=40.8
Q ss_pred CCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC-Cccc-hhHh-cCCCcCEEEccCCc-CCCCchHHhhCCCCCceE
Q 031005 43 NLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI-GELP-ASIC-NLIHLKSLCLNNNN-IGQIPANLLKDCKALQNI 117 (167)
Q Consensus 43 ~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~-~~l~-~~~~-~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l 117 (167)
.++.+|.++..|... -+.+.+++.++.+.+.++.- .... ..++ -.++|+.|++++|. |++---..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 355666666655533 23455566666666665532 2110 1111 23567777777663 454444445666666666
Q ss_pred Ecc
Q 031005 118 SLH 120 (167)
Q Consensus 118 ~l~ 120 (167)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 554
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.80 E-value=1.3 Score=20.43 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=11.4
Q ss_pred CCCceEEcccCCCChhh
Q 031005 112 KALQNISLHNNPISMDQ 128 (167)
Q Consensus 112 ~~L~~l~l~~n~~~~~~ 128 (167)
++|+.|+++.|.+....
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 35677777777776543
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.82 E-value=2 Score=34.85 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCCCeEEcCCCcCCccc---hhHhcCCCcCEEEccCC--cCCCCch-HHhhCCCCCceEEcccCCCCh
Q 031005 64 CYSLEELQANDNLIGELP---ASICNLIHLKSLCLNNN--NIGQIPA-NLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 64 l~~L~~l~l~~~~~~~l~---~~~~~~~~l~~l~l~~n--~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 126 (167)
.+.+..+++++|++..+. .-....+++..|+|++| .+...+. +-++.+ .|+.+.+.|||++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCcccc
Confidence 345566666666654331 22233456777777776 3322111 112333 36677777777763
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.14 E-value=0.067 Score=42.73 Aligned_cols=111 Identities=32% Similarity=0.429 Sum_probs=51.0
Q ss_pred hhCCCCCCEEEeeCCcCcc-----ccccc----cCCCCCcEEEeeCCCCCc-----cchhhccCCC-CCeEEcCCCcCCc
Q 031005 15 LGQLVRLERLSILGNMLTC-----LPETI----GSLRNLVLLNVSNNKLKS-----LPESIGSCYS-LEELQANDNLIGE 79 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~-----l~~~~----~~l~~L~~l~l~~n~~~~-----~~~~~~~l~~-L~~l~l~~~~~~~ 79 (167)
+.....++.++++.|.+.. ++..+ ....+++++.+.+|.++. +...+..... +.++++..|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 4444555555555555421 11222 234455555555555541 1112223333 4445555555542
Q ss_pred c-----chhHhcC-CCcCEEEccCCcCCCCc----hHHhhCCCCCceEEcccCCCC
Q 031005 80 L-----PASICNL-IHLKSLCLNNNNIGQIP----ANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 80 l-----~~~~~~~-~~l~~l~l~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~ 125 (167)
. ...+... ..+++++++.|.+++.- ......++.++.+.++.|++.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 1222333 45566666666663221 122444555666666666665
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.06 E-value=1.5 Score=34.44 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=6.5
Q ss_pred hCCCCCceEEcccC
Q 031005 109 KDCKALQNISLHNN 122 (167)
Q Consensus 109 ~~~~~L~~l~l~~n 122 (167)
..++.|+.++++++
T Consensus 292 ~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 292 ERCPSLRELDLSGC 305 (482)
T ss_pred HhcCcccEEeeecC
Confidence 34444555554443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.09 E-value=1.1 Score=31.80 Aligned_cols=78 Identities=23% Similarity=0.263 Sum_probs=49.5
Q ss_pred CCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCC-cc-chhh-ccCCCCCeEEcCCC-cCCccc-hhHhcCCCcCEEE
Q 031005 21 LERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLK-SL-PESI-GSCYSLEELQANDN-LIGELP-ASICNLIHLKSLC 94 (167)
Q Consensus 21 L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~-~~-~~~~-~~l~~L~~l~l~~~-~~~~l~-~~~~~~~~l~~l~ 94 (167)
++.++-+++.|...- ..+..+..++.|.+.+|.-- .. -+.+ ...++|+.|++++| +|++-. ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 566677777776432 56777888888888877432 11 1112 13578999999988 566442 4566677777776
Q ss_pred ccCC
Q 031005 95 LNNN 98 (167)
Q Consensus 95 l~~n 98 (167)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 6544
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=70.96 E-value=0.081 Score=42.28 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=6.8
Q ss_pred CCceEEcccCCCCh
Q 031005 113 ALQNISLHNNPISM 126 (167)
Q Consensus 113 ~L~~l~l~~n~~~~ 126 (167)
.+++++++.|.+..
T Consensus 263 ~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 263 TLRVLDLSRNSITE 276 (478)
T ss_pred hhhhhhhhcCCccc
Confidence 34455555555543
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=67.91 E-value=4.8 Score=31.63 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=61.0
Q ss_pred hhhCCCCCCEEEeeCC-c-Cccc----cccccCCCCCcEEEeeCCC-CCcc-chhh-ccCCCCCeEEcCCCc-CCc--cc
Q 031005 14 ELGQLVRLERLSILGN-M-LTCL----PETIGSLRNLVLLNVSNNK-LKSL-PESI-GSCYSLEELQANDNL-IGE--LP 81 (167)
Q Consensus 14 ~~~~l~~L~~L~l~~n-~-l~~l----~~~~~~l~~L~~l~l~~n~-~~~~-~~~~-~~l~~L~~l~l~~~~-~~~--l~ 81 (167)
.....++|++|+++++ . +... ......+.+|+.++++.+. ++.. -..+ ..++.|+.|.+.++. ++. +-
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 3467788888888873 2 2211 1233445778888888876 5532 1222 236788888876665 442 23
Q ss_pred hhHhcCCCcCEEEccCCcCC---CCchHHhhCCCCCceEEccc
Q 031005 82 ASICNLIHLKSLCLNNNNIG---QIPANLLKDCKALQNISLHN 121 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~---~~~~~~~~~~~~L~~l~l~~ 121 (167)
.....++.|++++++.+... .+... ...++.++.+.+..
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLS 330 (482)
T ss_pred HHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhh
Confidence 34455677888888877541 12222 34466655554443
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.73 E-value=7.4 Score=17.29 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=8.8
Q ss_pred CCCceEEcccCC-CChh
Q 031005 112 KALQNISLHNNP-ISMD 127 (167)
Q Consensus 112 ~~L~~l~l~~n~-~~~~ 127 (167)
+.|+.|++++++ ++..
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 456666666653 4443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.01 E-value=6.3 Score=32.16 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=6.5
Q ss_pred CcCEEEccCCcC
Q 031005 89 HLKSLCLNNNNI 100 (167)
Q Consensus 89 ~l~~l~l~~n~l 100 (167)
.|+.|.+.||++
T Consensus 271 ~Leel~l~GNPl 282 (585)
T KOG3763|consen 271 PLEELVLEGNPL 282 (585)
T ss_pred CHHHeeecCCcc
Confidence 445555555555
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=49.03 E-value=18 Score=35.41 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=26.9
Q ss_pred cccCCCCCCCchh-hhCCCCCCEEEeeCCcCc
Q 031005 2 TLDGNRITSLPDE-LGQLVRLERLSILGNMLT 32 (167)
Q Consensus 2 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~ 32 (167)
||++|+|..||.. |..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 6889999988664 778999999999999887
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=41.86 E-value=20 Score=28.46 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=60.1
Q ss_pred hCCCCCCEEEeeCCc-Cccc-cccc-cCCCCCcEEEeeCCC-CCcc--chhhccCCCCCeEEcCCCcCC---ccchhHhc
Q 031005 16 GQLVRLERLSILGNM-LTCL-PETI-GSLRNLVLLNVSNNK-LKSL--PESIGSCYSLEELQANDNLIG---ELPASICN 86 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~-l~~l-~~~~-~~l~~L~~l~l~~n~-~~~~--~~~~~~l~~L~~l~l~~~~~~---~l~~~~~~ 86 (167)
..+.+|+.|+.+++. ++.. -..+ .+..+|+++-+..+. ++.. ..--.+++.|+.+++.++... .+..--.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 345667777777664 4332 2333 455778888887773 3321 111245667777777776543 12222335
Q ss_pred CCCcCEEEccCCcC-CCCc----hHHhhCCCCCceEEcccCCCCh
Q 031005 87 LIHLKSLCLNNNNI-GQIP----ANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 87 ~~~l~~l~l~~n~l-~~~~----~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
++.++.+.++.+.. +... ...--++..+..+.++..+...
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 56777777776654 1110 1111234556677777776653
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=29.32 E-value=39 Score=26.97 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=48.6
Q ss_pred hCCCCCCEEEeeCCc-Cccc--cccccCCCCCcEEEeeCCCCCc---cchhhccCCCCCeEEcCCCcC-Ccc-----chh
Q 031005 16 GQLVRLERLSILGNM-LTCL--PETIGSLRNLVLLNVSNNKLKS---LPESIGSCYSLEELQANDNLI-GEL-----PAS 83 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~-l~~l--~~~~~~l~~L~~l~l~~n~~~~---~~~~~~~l~~L~~l~l~~~~~-~~l-----~~~ 83 (167)
.+.++|+.+.+..++ ++.. ..--.+.+.|+.+++..+.... +-..-.+++.|+.+.++.+.. +.- ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 345666666666664 3321 1111334556666666554331 212223455666666665422 111 111
Q ss_pred HhcCCCcCEEEccCCcC-CCCchHHhhCCCCCceEEccc
Q 031005 84 ICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHN 121 (167)
Q Consensus 84 ~~~~~~l~~l~l~~n~l-~~~~~~~~~~~~~L~~l~l~~ 121 (167)
-.....+..+-+++++. ...-.+....++.|+.+++-.
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 12234555666666654 222223345555666555433
Done!