Query 031005
Match_columns 167
No_of_seqs 121 out of 1467
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:12:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e6j_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 127.8 12.5 128 1-128 45-175 (229)
2 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.5E-24 126.8 10.2 127 1-127 37-167 (220)
3 2wfh_A SLIT homolog 2 protein 99.8 4.8E-19 1.6E-23 122.7 10.4 126 1-128 15-142 (193)
4 2v70_A SLIT-2, SLIT homolog 2 99.8 8.4E-19 2.9E-23 123.8 10.1 128 1-128 37-169 (220)
5 2o6s_A Variable lymphocyte rec 99.8 6.2E-18 2.1E-22 118.1 13.7 139 1-143 33-175 (208)
6 4fcg_A Uncharacterized protein 99.8 7.6E-19 2.6E-23 130.9 9.3 123 2-125 87-242 (328)
7 3m19_A Variable lymphocyte rec 99.8 2.4E-18 8.3E-23 123.5 11.0 126 2-127 65-194 (251)
8 2v9t_B SLIT homolog 2 protein 99.8 1.9E-18 6.4E-23 122.0 10.1 126 2-129 17-145 (220)
9 3m19_A Variable lymphocyte rec 99.8 4.2E-18 1.4E-22 122.3 12.1 128 1-128 40-171 (251)
10 2ell_A Acidic leucine-rich nuc 99.8 2.3E-18 7.9E-23 116.5 9.8 123 2-125 30-160 (168)
11 1w8a_A SLIT protein; signaling 99.8 1.7E-18 5.9E-23 119.8 9.0 126 1-128 13-142 (192)
12 1p9a_G Platelet glycoprotein I 99.8 3.6E-18 1.2E-22 125.2 10.1 109 17-125 75-185 (290)
13 2o6q_A Variable lymphocyte rec 99.8 7.9E-18 2.7E-22 122.1 11.1 124 2-125 43-170 (270)
14 4fcg_A Uncharacterized protein 99.7 4.7E-18 1.6E-22 126.6 9.2 124 2-126 133-267 (328)
15 2o6q_A Variable lymphocyte rec 99.7 1.3E-17 4.5E-22 120.9 11.3 127 2-128 91-221 (270)
16 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.5E-22 118.2 10.1 130 1-132 16-149 (220)
17 3rfs_A Internalin B, repeat mo 99.7 4.2E-17 1.4E-21 118.4 13.5 139 1-143 90-232 (272)
18 2je0_A Acidic leucine-rich nuc 99.7 5.5E-18 1.9E-22 112.4 8.1 109 17-126 15-127 (149)
19 4g8a_A TOLL-like receptor 4; l 99.7 9.5E-18 3.2E-22 133.7 10.8 132 1-132 57-193 (635)
20 1p9a_G Platelet glycoprotein I 99.7 2.1E-17 7E-22 121.2 11.7 127 1-128 82-211 (290)
21 3rfs_A Internalin B, repeat mo 99.7 1.9E-17 6.5E-22 120.2 11.2 127 1-128 68-197 (272)
22 2o6r_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 111.6 11.5 125 2-128 13-140 (177)
23 3e6j_A Variable lymphocyte rec 99.7 2.2E-17 7.5E-22 117.2 10.7 124 2-128 25-151 (229)
24 1a9n_A U2A', U2A'; complex (nu 99.7 1.4E-17 4.8E-22 113.6 9.1 124 1-126 24-154 (176)
25 4ezg_A Putative uncharacterize 99.7 5.1E-17 1.7E-21 112.6 11.2 123 1-127 49-174 (197)
26 2xot_A Amphoterin-induced prot 99.7 1.9E-17 6.7E-22 124.7 9.7 127 1-127 44-178 (361)
27 1ozn_A Reticulon 4 receptor; N 99.7 4.8E-17 1.6E-21 118.6 11.4 126 2-127 111-240 (285)
28 1ozn_A Reticulon 4 receptor; N 99.7 4.2E-17 1.4E-21 118.9 10.4 125 2-126 38-167 (285)
29 4b8c_D Glucose-repressible alc 99.7 2.5E-17 8.4E-22 134.2 9.7 126 7-133 212-337 (727)
30 3v47_A TOLL-like receptor 5B a 99.7 1.5E-16 5.1E-21 122.7 13.3 128 1-128 280-411 (455)
31 2z62_A TOLL-like receptor 4, v 99.7 4.7E-17 1.6E-21 118.1 9.7 129 1-130 33-167 (276)
32 4ezg_A Putative uncharacterize 99.7 1.9E-16 6.5E-21 109.8 12.2 122 1-126 71-195 (197)
33 2xwt_C Thyrotropin receptor; s 99.7 2.9E-17 1E-21 117.0 7.9 125 1-126 36-170 (239)
34 2o6s_A Variable lymphocyte rec 99.7 1.2E-16 4.3E-21 111.4 10.5 125 2-128 13-140 (208)
35 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.5E-21 114.9 11.2 120 1-127 46-165 (263)
36 2xot_A Amphoterin-induced prot 99.7 7.3E-17 2.5E-21 121.6 8.8 128 1-128 69-205 (361)
37 1ogq_A PGIP-2, polygalacturona 99.7 8.7E-17 3E-21 119.0 8.7 125 1-126 55-188 (313)
38 3o6n_A APL1; leucine-rich repe 99.7 1.3E-16 4.5E-21 121.0 9.4 135 2-136 51-189 (390)
39 2z80_A TOLL-like receptor 2, v 99.7 3.7E-17 1.3E-21 122.6 6.1 127 1-127 57-189 (353)
40 2xwt_C Thyrotropin receptor; s 99.7 2.8E-17 9.7E-22 117.0 5.2 123 1-125 60-193 (239)
41 3vq2_A TLR4, TOLL-like recepto 99.7 1.6E-16 5.6E-21 126.6 10.1 135 1-136 37-177 (606)
42 1dce_A Protein (RAB geranylger 99.7 2.7E-16 9.3E-21 124.9 11.2 106 20-127 442-548 (567)
43 4g8a_A TOLL-like receptor 4; l 99.7 1.5E-16 5E-21 126.8 9.5 119 6-126 41-162 (635)
44 2z66_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 120.9 4.9 127 2-128 107-239 (306)
45 2z66_A Variable lymphocyte rec 99.7 1.8E-16 6.3E-21 116.6 8.8 127 1-127 131-263 (306)
46 1h6u_A Internalin H; cell adhe 99.7 1E-15 3.4E-20 113.1 12.5 117 3-125 70-186 (308)
47 1h6u_A Internalin H; cell adhe 99.7 1.5E-15 5.1E-20 112.2 13.3 117 3-125 48-164 (308)
48 2z7x_B TOLL-like receptor 1, v 99.7 4.2E-16 1.4E-20 122.2 10.9 130 1-135 5-138 (520)
49 1h6t_A Internalin B; cell adhe 99.7 1.7E-15 5.8E-20 111.0 13.5 117 3-125 75-191 (291)
50 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-16 1.5E-20 115.3 10.0 146 1-148 125-277 (317)
51 2z62_A TOLL-like receptor 4, v 99.7 1E-15 3.4E-20 111.1 11.6 127 1-127 81-239 (276)
52 1ogq_A PGIP-2, polygalacturona 99.7 6.4E-17 2.2E-21 119.7 5.2 122 2-125 82-210 (313)
53 4b8c_D Glucose-repressible alc 99.7 2E-17 6.9E-22 134.7 2.6 126 1-126 229-355 (727)
54 1h6t_A Internalin B; cell adhe 99.7 1.7E-15 5.8E-20 111.0 12.6 121 1-127 51-171 (291)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 7.1E-16 2.4E-20 122.2 11.3 131 1-135 36-169 (562)
56 1xeu_A Internalin C; cellular 99.7 5.2E-16 1.8E-20 112.3 9.7 121 1-128 68-188 (263)
57 3zyj_A Leucine-rich repeat-con 99.7 3.9E-16 1.3E-20 120.3 9.5 41 15-55 108-149 (440)
58 3zyi_A Leucine-rich repeat-con 99.7 4.3E-16 1.5E-20 120.5 9.7 81 1-81 80-163 (452)
59 2id5_A Lingo-1, leucine rich r 99.7 1.7E-16 6E-21 123.2 7.5 125 1-125 37-165 (477)
60 2id5_A Lingo-1, leucine rich r 99.7 4.3E-16 1.5E-20 121.0 9.4 129 1-129 61-193 (477)
61 3zyj_A Leucine-rich repeat-con 99.6 5.9E-16 2E-20 119.3 9.9 97 1-97 69-169 (440)
62 3zyi_A Leucine-rich repeat-con 99.6 5E-16 1.7E-20 120.1 9.5 57 2-58 105-163 (452)
63 3oja_B Anopheles plasmodium-re 99.6 5E-16 1.7E-20 124.0 9.6 135 2-136 57-195 (597)
64 3o6n_A APL1; leucine-rich repe 99.6 9.7E-16 3.3E-20 116.3 10.3 124 2-129 232-356 (390)
65 2ell_A Acidic leucine-rich nuc 99.6 6E-16 2.1E-20 104.5 8.2 111 16-127 21-135 (168)
66 2z81_A CD282 antigen, TOLL-lik 99.6 1.5E-15 5E-20 119.7 11.6 126 2-128 367-513 (549)
67 2z7x_B TOLL-like receptor 1, v 99.6 1.4E-15 4.7E-20 119.3 11.3 127 2-128 330-484 (520)
68 3t6q_A CD180 antigen; protein- 99.6 3.8E-16 1.3E-20 124.4 8.1 127 1-127 38-168 (606)
69 2z63_A TOLL-like receptor 4, v 99.6 7.4E-16 2.5E-20 121.8 9.7 132 1-133 33-170 (570)
70 2je0_A Acidic leucine-rich nuc 99.6 4.3E-16 1.5E-20 103.2 6.9 119 1-120 22-148 (149)
71 1xku_A Decorin; proteoglycan, 99.6 1.1E-15 3.6E-20 113.7 9.8 123 2-127 151-278 (330)
72 2z80_A TOLL-like receptor 2, v 99.6 8E-16 2.7E-20 115.3 8.8 123 2-126 37-164 (353)
73 3g39_A Variable lymphocyte rec 99.6 2.4E-15 8.3E-20 102.0 10.4 107 20-128 10-118 (170)
74 2z81_A CD282 antigen, TOLL-lik 99.6 3.1E-16 1.1E-20 123.6 5.9 127 1-127 31-163 (549)
75 1xku_A Decorin; proteoglycan, 99.6 1.9E-15 6.7E-20 112.2 9.8 121 2-124 58-183 (330)
76 2r9u_A Variable lymphocyte rec 99.6 4.1E-15 1.4E-19 101.3 10.5 106 21-128 14-121 (174)
77 2ft3_A Biglycan; proteoglycan, 99.6 9.4E-16 3.2E-20 114.1 8.0 122 2-125 178-307 (332)
78 1m9s_A Internalin B; cell inva 99.6 4.7E-15 1.6E-19 118.6 12.2 106 15-125 83-188 (605)
79 3oja_A Leucine-rich immune mol 99.6 2.7E-15 9.4E-20 117.2 10.3 126 1-128 125-253 (487)
80 4fmz_A Internalin; leucine ric 99.6 8.1E-15 2.8E-19 109.4 12.4 109 15-126 217-325 (347)
81 3vq2_A TLR4, TOLL-like recepto 99.6 1.7E-15 5.8E-20 120.7 9.1 135 2-138 17-158 (606)
82 3v47_A TOLL-like receptor 5B a 99.6 3E-15 1E-19 115.4 10.2 130 1-130 35-172 (455)
83 3oja_B Anopheles plasmodium-re 99.6 2.7E-15 9.1E-20 119.8 10.1 123 2-128 238-361 (597)
84 1m9s_A Internalin B; cell inva 99.6 8.1E-15 2.8E-19 117.2 12.9 130 1-136 48-178 (605)
85 1ds9_A Outer arm dynein; leuci 99.6 2.7E-17 9.2E-22 114.1 -1.2 119 7-127 36-155 (198)
86 2wfh_A SLIT homolog 2 protein 99.6 3.7E-15 1.3E-19 103.1 9.5 107 21-129 12-119 (193)
87 4eco_A Uncharacterized protein 99.6 2.8E-15 9.4E-20 120.6 10.1 124 1-125 438-579 (636)
88 3rgz_A Protein brassinosteroid 99.6 2.4E-15 8.3E-20 123.2 9.8 123 2-125 400-527 (768)
89 2ft3_A Biglycan; proteoglycan, 99.6 4.7E-15 1.6E-19 110.3 10.5 120 2-125 39-160 (332)
90 1ziw_A TOLL-like receptor 3; i 99.6 3.4E-15 1.2E-19 120.5 10.3 125 1-125 30-158 (680)
91 1wwl_A Monocyte differentiatio 99.6 7.5E-16 2.6E-20 113.8 6.0 125 2-126 101-242 (312)
92 3cvr_A Invasion plasmid antige 99.6 4E-15 1.4E-19 118.1 10.4 123 1-136 125-254 (571)
93 4eco_A Uncharacterized protein 99.6 9.9E-16 3.4E-20 123.2 7.1 121 5-125 192-343 (636)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.2E-15 2.1E-19 116.8 11.3 127 2-128 359-513 (562)
95 1ziw_A TOLL-like receptor 3; i 99.6 3.2E-15 1.1E-19 120.7 9.4 127 2-130 10-139 (680)
96 4fmz_A Internalin; leucine ric 99.6 1.5E-14 5.1E-19 108.0 12.1 121 2-128 183-303 (347)
97 2z63_A TOLL-like receptor 4, v 99.6 2.7E-15 9.3E-20 118.5 8.3 127 2-128 402-534 (570)
98 4ecn_A Leucine-rich repeat pro 99.6 1.2E-15 4.1E-20 126.2 6.4 113 11-125 481-608 (876)
99 1dce_A Protein (RAB geranylger 99.6 8.5E-15 2.9E-19 116.3 10.9 117 1-119 446-567 (567)
100 3rgz_A Protein brassinosteroid 99.6 5.4E-15 1.8E-19 121.1 9.7 128 1-129 423-555 (768)
101 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-15 1.9E-19 100.6 8.2 111 15-126 15-127 (176)
102 4ecn_A Leucine-rich repeat pro 99.6 9.6E-15 3.3E-19 120.8 11.1 123 2-125 679-819 (876)
103 1w8a_A SLIT protein; signaling 99.6 4.5E-15 1.5E-19 102.5 7.8 107 21-129 10-119 (192)
104 4glp_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 112.9 4.3 125 1-126 122-265 (310)
105 1wwl_A Monocyte differentiatio 99.6 1E-14 3.4E-19 107.8 9.4 126 1-126 126-267 (312)
106 3j0a_A TOLL-like receptor 5; m 99.6 1E-14 3.5E-19 120.6 9.7 127 1-127 29-163 (844)
107 2r9u_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 97.7 9.6 103 1-105 17-122 (174)
108 3bz5_A Internalin-J, INLJ; leu 99.6 1.6E-14 5.4E-19 112.1 10.1 112 1-122 47-158 (457)
109 3t6q_A CD180 antigen; protein- 99.6 9.9E-15 3.4E-19 116.3 9.2 124 2-125 260-389 (606)
110 4glp_A Monocyte differentiatio 99.6 2.7E-15 9.4E-20 110.7 5.3 133 1-136 150-297 (310)
111 3g39_A Variable lymphocyte rec 99.6 1.7E-14 6E-19 97.7 8.8 102 1-104 14-118 (170)
112 1o6v_A Internalin A; bacterial 99.6 6E-14 2.1E-18 108.8 12.8 118 3-126 250-367 (466)
113 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.6E-21 110.6 -4.1 123 1-127 53-187 (198)
114 3oja_A Leucine-rich immune mol 99.5 1.3E-14 4.4E-19 113.4 6.4 126 1-127 39-184 (487)
115 3o53_A Protein LRIM1, AGAP0063 99.5 1.6E-14 5.6E-19 106.9 6.5 125 1-126 39-183 (317)
116 1o6v_A Internalin A; bacterial 99.5 6.2E-14 2.1E-18 108.7 9.9 121 2-126 52-191 (466)
117 3g06_A SSPH2 (leucine-rich rep 99.5 1.6E-13 5.3E-18 110.1 12.4 111 19-136 181-308 (622)
118 3bz5_A Internalin-J, INLJ; leu 99.5 1E-13 3.6E-18 107.5 9.7 116 1-127 69-206 (457)
119 2o6r_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 93.0 9.7 106 20-127 8-115 (177)
120 3cvr_A Invasion plasmid antige 99.5 2.5E-13 8.6E-18 107.9 11.2 69 3-80 87-155 (571)
121 1jl5_A Outer protein YOPM; leu 99.5 2.4E-13 8.3E-18 105.3 10.5 115 2-126 137-251 (454)
122 2ifg_A High affinity nerve gro 99.5 2.6E-13 9E-18 101.3 9.9 104 22-127 11-118 (347)
123 2ca6_A RAN GTPase-activating p 99.4 9.6E-14 3.3E-18 105.2 6.4 128 1-128 164-319 (386)
124 2ast_B S-phase kinase-associat 99.4 9E-14 3.1E-18 103.2 5.9 111 12-122 135-257 (336)
125 3j0a_A TOLL-like receptor 5; m 99.4 3E-13 1E-17 111.8 9.1 134 2-138 10-153 (844)
126 2ast_B S-phase kinase-associat 99.4 9.1E-14 3.1E-18 103.2 4.7 125 2-127 99-238 (336)
127 2ifg_A High affinity nerve gro 99.4 1.1E-12 3.8E-17 97.9 9.4 101 2-103 14-118 (347)
128 3g06_A SSPH2 (leucine-rich rep 99.4 1.9E-12 6.5E-17 103.8 10.5 92 2-104 46-137 (622)
129 4ay9_X Follicle-stimulating ho 99.4 2.8E-13 9.6E-18 101.5 4.5 138 2-139 60-229 (350)
130 1jl5_A Outer protein YOPM; leu 99.4 2.6E-12 9E-17 99.5 10.0 78 42-125 131-208 (454)
131 2ca6_A RAN GTPase-activating p 99.3 4.6E-13 1.6E-17 101.4 4.0 17 109-125 241-257 (386)
132 3goz_A Leucine-rich repeat-con 99.3 2.6E-12 9E-17 96.6 7.6 58 21-78 24-93 (362)
133 4ay9_X Follicle-stimulating ho 99.3 5E-12 1.7E-16 94.7 7.7 98 5-104 18-120 (350)
134 3goz_A Leucine-rich repeat-con 99.3 2.8E-12 9.6E-17 96.4 5.3 13 113-125 226-238 (362)
135 1z7x_W Ribonuclease inhibitor; 99.2 3.1E-12 1.1E-16 98.6 2.9 125 2-127 262-413 (461)
136 1z7x_W Ribonuclease inhibitor; 99.2 1.2E-11 4.1E-16 95.4 4.0 77 2-78 205-297 (461)
137 3sb4_A Hypothetical leucine ri 99.2 5.3E-11 1.8E-15 88.4 7.2 90 41-132 225-317 (329)
138 3un9_A NLR family member X1; l 99.1 1.7E-11 5.7E-16 92.8 1.9 129 2-130 107-257 (372)
139 3sb4_A Hypothetical leucine ri 99.0 6.7E-10 2.3E-14 82.4 7.5 100 18-119 225-328 (329)
140 3un9_A NLR family member X1; l 98.9 4.4E-10 1.5E-14 85.0 3.8 127 1-127 131-285 (372)
141 1io0_A Tropomodulin; LRR prote 98.9 1E-09 3.5E-14 75.2 4.7 114 14-127 31-166 (185)
142 3ogk_B Coronatine-insensitive 98.8 3E-09 1E-13 84.3 4.5 91 38-128 432-529 (592)
143 1io0_A Tropomodulin; LRR prote 98.7 9.3E-09 3.2E-13 70.3 4.6 101 1-101 41-164 (185)
144 3ogk_B Coronatine-insensitive 98.7 1.6E-08 5.5E-13 80.1 4.6 59 15-73 188-251 (592)
145 4fdw_A Leucine rich hypothetic 98.5 1.7E-07 5.7E-12 71.5 6.9 105 13-122 174-281 (401)
146 3rw6_A Nuclear RNA export fact 98.4 4.7E-07 1.6E-11 65.4 6.7 62 63-125 168-233 (267)
147 2p1m_B Transport inhibitor res 98.4 1.5E-07 5E-12 74.6 4.3 39 17-55 128-169 (594)
148 3rw6_A Nuclear RNA export fact 98.4 2.6E-07 8.9E-12 66.7 5.1 94 24-118 148-257 (267)
149 4fdw_A Leucine rich hypothetic 98.4 1.3E-06 4.5E-11 66.6 8.7 93 31-126 259-359 (401)
150 2p1m_B Transport inhibitor res 98.3 6.1E-07 2.1E-11 71.1 4.9 106 16-122 102-221 (594)
151 2ra8_A Uncharacterized protein 98.2 5.5E-06 1.9E-10 62.3 7.9 114 11-126 164-293 (362)
152 2ra8_A Uncharacterized protein 98.2 3.1E-06 1.1E-10 63.7 6.1 115 17-131 191-326 (362)
153 4gt6_A Cell surface protein; l 98.1 1.8E-05 6.1E-10 59.9 8.9 121 14-138 260-383 (394)
154 3rfe_A Platelet glycoprotein I 98.0 6.9E-06 2.4E-10 52.8 5.0 57 69-127 12-70 (130)
155 3e4g_A ATP synthase subunit S, 98.0 1E-05 3.6E-10 54.6 5.5 82 42-123 61-150 (176)
156 1pgv_A TMD-1, tropomodulin TMD 98.0 3.5E-05 1.2E-09 53.0 8.2 111 15-125 37-170 (197)
157 4h09_A Hypothetical leucine ri 97.9 5.4E-05 1.9E-09 56.8 8.3 105 15-122 236-343 (379)
158 3e4g_A ATP synthase subunit S, 97.8 3.1E-05 1.1E-09 52.3 5.3 98 18-115 60-170 (176)
159 1pgv_A TMD-1, tropomodulin TMD 97.7 4.6E-05 1.6E-09 52.4 5.0 99 2-100 47-169 (197)
160 4fs7_A Uncharacterized protein 97.5 0.00024 8.2E-09 53.7 7.3 82 38-122 293-376 (394)
161 3rfe_A Platelet glycoprotein I 97.4 0.00045 1.5E-08 44.2 6.0 55 22-78 11-68 (130)
162 4gt6_A Cell surface protein; l 97.3 0.00049 1.7E-08 52.0 6.7 106 13-124 282-390 (394)
163 4h09_A Hypothetical leucine ri 97.2 0.0014 4.8E-08 49.1 8.0 105 15-122 213-320 (379)
164 4fs7_A Uncharacterized protein 96.9 0.0028 9.7E-08 47.8 6.8 83 37-125 271-355 (394)
165 2lz0_A Uncharacterized protein 67.8 6.6 0.00023 23.3 3.5 45 53-98 7-53 (100)
No 1
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.9e-19 Score=127.83 Aligned_cols=128 Identities=32% Similarity=0.479 Sum_probs=116.3
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+..+ |..+..+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.+
T Consensus 45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 47889999976 667899999999999999999987 457899999999999999998865 568899999999999999
Q ss_pred CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
+.+|..+..+++|++|++++|.+..++...+..+++|+.+++++|++.+..
T Consensus 125 ~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999999999999999999999999998877899999999999999999763
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.2e-19 Score=126.81 Aligned_cols=127 Identities=29% Similarity=0.456 Sum_probs=110.8
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~ 77 (167)
|++++|+|+.++. .|..+++|++|++++|+++.+ |..|..+++|+.|++++|.++.+|+. |..+++|+.|++++|.+
T Consensus 37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCC
Confidence 4677888887754 688899999999999999986 67889999999999999999988764 67899999999999999
Q ss_pred Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+.+ +..+..+++|++|++++|.+..++...+..+++|+.+++++|++.++
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 877 56788899999999999999988887788999999999999999875
No 3
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=122.75 Aligned_cols=126 Identities=25% Similarity=0.430 Sum_probs=113.7
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~ 79 (167)
+++++++++.+|..+ .+.+++|++++|.++.+|..|..+++|+.|++++|.++.+++ .|..+++|++|++++|.++.
T Consensus 15 l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 356788899998754 368999999999999999999999999999999999998854 68999999999999999998
Q ss_pred cc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 80 LP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 80 l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++ ..+..+++|++|++++|.+..++..++..+++|+.+++++|++.++.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 85 57889999999999999999999988999999999999999998753
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=123.80 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=110.3
Q ss_pred CcccCCCCCCCc--hhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCc
Q 031005 1 MTLDGNRITSLP--DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL 76 (167)
Q Consensus 1 L~l~~~~i~~l~--~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~ 76 (167)
|++++|+++.++ ..+..+++|++|++++|.++.+++ .|..+++|+.|++++|.++.+++ .+..+++|++|++++|.
T Consensus 37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 467788888663 237889999999999999998764 78999999999999999998855 58889999999999999
Q ss_pred CCcc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++.+ |..+..+++|++|++++|.+..+++..+..+++|+.+++++|++.++.
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9877 677888999999999999998887666899999999999999998753
No 5
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=6.2e-18 Score=118.08 Aligned_cols=139 Identities=32% Similarity=0.506 Sum_probs=117.6
Q ss_pred CcccCCCCCCCchh-hhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|+++.++.. +..+++|++|++++|+++.++. .|..+++|++|++++|.++.+++ .+..+++|++|++++|.+
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcC
Confidence 46788889877654 6889999999999999998864 57889999999999999998865 468899999999999999
Q ss_pred Cccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHHHHH
Q 031005 78 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRR 143 (167)
Q Consensus 78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~~~ 143 (167)
+.++. .+..+++|++|++++|.+..++...+..+++|+.+++++|++.+. .+.++.+.....
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~L~~~~n 175 (208)
T 2o6s_A 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWIN 175 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHHHHHHHH
T ss_pred cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----CCCHHHHHHHHH
Confidence 88865 478899999999999999999887788999999999999988764 445666665554
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=7.6e-19 Score=130.90 Aligned_cols=123 Identities=29% Similarity=0.410 Sum_probs=63.1
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCC----------------
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCY---------------- 65 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~---------------- 65 (167)
+++++.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+|+.+..++
T Consensus 87 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~ 166 (328)
T 4fcg_A 87 ELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166 (328)
T ss_dssp EEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred EccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcccc
Confidence 3444444444444444455555555555444444444444445555554444444444444444
Q ss_pred -----------------CCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 66 -----------------SLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 66 -----------------~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+|+.|++++|.++.+|..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.+.
T Consensus 167 p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTC
T ss_pred ChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcch
Confidence 44444444444444555555555666666666666555554 455556666666665554
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=2.4e-18 Score=123.51 Aligned_cols=126 Identities=30% Similarity=0.467 Sum_probs=81.4
Q ss_pred cccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
++++|.+..+++ .+..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++
T Consensus 65 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 455555554432 3555666666666666666554 345666666666666666666644 3456667777777777776
Q ss_pred ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.++. .+..+++|++|++++|.+..++...+..+++|+.+++++|++.+.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6654 466677777777777777777665567777777777777777654
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.9e-18 Score=122.00 Aligned_cols=126 Identities=25% Similarity=0.394 Sum_probs=111.8
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
+.++++++.+|..+. +.++.|++++|.++.++. .|..+++|+.|++++|.++.+ |..|..+++|++|++++|.++.
T Consensus 17 ~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 17 DCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp ECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred EcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 567788888887654 689999999999999864 789999999999999999988 6689999999999999999999
Q ss_pred cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005 80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF 129 (167)
Q Consensus 80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 129 (167)
+|. .+..+++|++|++++|.+..++...+..+++|+.|++++|.++....
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 875 46789999999999999999988779999999999999999985543
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=4.2e-18 Score=122.29 Aligned_cols=128 Identities=29% Similarity=0.400 Sum_probs=113.8
Q ss_pred CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+..++ ..+..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence 478899999774 46899999999999999999875 568999999999999999998865 678999999999999999
Q ss_pred Cccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 78 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
+.++. .+..+++|++|++++|.+..++...++.+++|+.|++++|.+....
T Consensus 120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 98865 4688999999999999999999877899999999999999988543
No 10
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=2.3e-18 Score=116.46 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=82.1
Q ss_pred cccCCCCC--CCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~~~ 78 (167)
++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++
T Consensus 30 ~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 108 (168)
T 2ell_A 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108 (168)
T ss_dssp ECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC
T ss_pred ECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC
Confidence 55666666 5666666677777777777776666 556666777777777777765 4555555777777777777776
Q ss_pred ccc--hhHhcCCCcCEEEccCCcCCCCch---HHhhCCCCCceEEcccCCCC
Q 031005 79 ELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 79 ~l~--~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~ 125 (167)
.++ ..+..+++|++|++++|.+..++. ..+..+++|+.+++++|.+.
T Consensus 109 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 109 DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 654 456666777777777777766655 44666777777777776654
No 11
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.7e-18 Score=119.75 Aligned_cols=126 Identities=24% Similarity=0.413 Sum_probs=111.4
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc--cccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE--TIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
+++++++++.+|..+. ..+++|++++|.++.++. .+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 13 l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4678899999987654 389999999999999875 389999999999999999988 66899999999999999999
Q ss_pred Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
+.++ ..+..+++|++|++++|.+..+++..+..+++|+.+++++|++.+..
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9775 45888999999999999998876666899999999999999999764
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=3.6e-18 Score=125.24 Aligned_cols=109 Identities=33% Similarity=0.444 Sum_probs=64.3
Q ss_pred CCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEEE
Q 031005 17 QLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLC 94 (167)
Q Consensus 17 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l~ 94 (167)
.+++|++|++++|+++.+|..+..+++|+.|++++|.++.++ ..|..+++|++|++++|.++.+|. .+..+++|+.|+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 344444444445555555555555566666666666666554 345566666666666666665543 345566666666
Q ss_pred ccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 95 LNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+++|.+..++..++..+++|+.|++++|.++
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 6666666666655566666666666666665
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=7.9e-18 Score=122.07 Aligned_cols=124 Identities=31% Similarity=0.492 Sum_probs=58.5
Q ss_pred cccCCCCCCCch-hhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
++++|.++.++. .+..+++|++|++++|.++.++. .|..+++|++|++++|.+..+++ .+..+++|++|++++|.++
T Consensus 43 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp ECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred ECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC
Confidence 445555554433 35555555555555555555543 23455555555555555554433 3344455555555555444
Q ss_pred ccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 79 ELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 79 ~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
.++ ..+..+++|++|++++|.+..++...+..+++|+.|++++|.+.
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 332 22334444444444444444444333344444444444444333
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=4.7e-18 Score=126.63 Aligned_cols=124 Identities=27% Similarity=0.359 Sum_probs=79.8
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCc-ccccccc---------CCCCCcEEEeeCCCCCccchhhccCCCCCeEE
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLT-CLPETIG---------SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQ 71 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---------~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~ 71 (167)
++++|.+..+|..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|.++.+|+.+..+++|+.|+
T Consensus 133 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212 (328)
T ss_dssp EEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE
T ss_pred ECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE
Confidence 4556666666666666666666666664433 3444332 25666666666666666666777777777777
Q ss_pred cCCCcCCccchhHhcCCCcCEEEccCCcC-CCCchHHhhCCCCCceEEcccCCCCh
Q 031005 72 ANDNLIGELPASICNLIHLKSLCLNNNNI-GQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 72 l~~~~~~~l~~~~~~~~~l~~l~l~~n~l-~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+++|.+..+|..+..+++|++|++++|.+ +.+|.. +..+++|+.|++++|.+..
T Consensus 213 L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp EESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCC
T ss_pred ccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchh
Confidence 77777777776677777777777777665 344433 5667777777777766553
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.3e-17 Score=120.89 Aligned_cols=127 Identities=31% Similarity=0.485 Sum_probs=82.1
Q ss_pred cccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
++++|.+..++. .+..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+|+ .+..+++|+.|++++|.++
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 344555554433 2355555666666666655543 345566666666666666666644 3566677777777777776
Q ss_pred ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
.++. .+..+++|++|++++|.+..++..++..+++|+.+++++|++.+..
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 6643 4666777788888888777777766777778888888888877653
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=118.20 Aligned_cols=130 Identities=20% Similarity=0.282 Sum_probs=111.6
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc--ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP--ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
++++++.++.+|..+. ..+++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .|..+++|++|++++|.+
T Consensus 16 l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4678888999987553 45789999999999874 358999999999999999998865 789999999999999999
Q ss_pred Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccc
Q 031005 78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQM 132 (167)
Q Consensus 78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 132 (167)
+.++ ..+..+++|++|++++|.+..+++..+..+++|+.|++++|.++......+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 9885 458889999999999999998877778999999999999999986543333
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=4.2e-17 Score=118.40 Aligned_cols=139 Identities=32% Similarity=0.520 Sum_probs=99.0
Q ss_pred CcccCCCCCCCchh-hhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.++.. +..+++|++|++++|+++.+++ .+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.+
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 35667777766443 5677777777777777777653 46777778888888887777654 456777888888888877
Q ss_pred Cccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHHHHHHH
Q 031005 78 GELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEFEARRR 143 (167)
Q Consensus 78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l~~~~~ 143 (167)
+.++. .+..+++|++|++++|.+..++...+..+++|+.+++++|++.+. .+.++.+..+..
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n 232 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWIN 232 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHH
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHH
Confidence 76643 456777888888888888777776677788888888888887754 335565555544
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=5.5e-18 Score=112.44 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=81.0
Q ss_pred CCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc-cchhHhcCCCcCEE
Q 031005 17 QLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE-LPASICNLIHLKSL 93 (167)
Q Consensus 17 ~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~-l~~~~~~~~~l~~l 93 (167)
..++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.++. +|..+..+++|+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3466778888888877 5777777778888888888877766 667777788888888887776 66666667788888
Q ss_pred EccCCcCCCCch-HHhhCCCCCceEEcccCCCCh
Q 031005 94 CLNNNNIGQIPA-NLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 94 ~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 126 (167)
++++|.+..++. ..+..+++|+.+++++|+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 888888776642 346777788888888887764
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=9.5e-18 Score=133.66 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=105.0
Q ss_pred CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|+|++|.|+.+| .+|..+++|++|++++|+++.++ ..|..+++|++|++++|.++.+|+ .|..+++|++|++++|.+
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 578888888775 46888889999999999888876 468888899999999998888865 578888899999999888
Q ss_pred Cccch-hHhcCCCcCEEEccCCcCCCCc-hHHhhCCCCCceEEcccCCCChhhhccc
Q 031005 78 GELPA-SICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISMDQFQQM 132 (167)
Q Consensus 78 ~~l~~-~~~~~~~l~~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 132 (167)
+.++. .++.+++|++|++++|.+..++ +..++.++.|+.|++++|.++......+
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 87754 5788888999999998886542 2347788889999999988875544333
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2.1e-17 Score=121.23 Aligned_cols=127 Identities=32% Similarity=0.391 Sum_probs=114.0
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
|++++|++..+|..+..+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+|+ .+..+++|+.|++++|.++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 47888999999988899999999999999999986 678999999999999999998866 5678999999999999999
Q ss_pred ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
.+|. .+..+++|++|++++|.+..+|..+ ...+.|+.+++++|++.+..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~-~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCBCCSG
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhh-cccccCCeEEeCCCCccCcC
Confidence 9875 4577999999999999999999874 56779999999999998763
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.9e-17 Score=120.20 Aligned_cols=127 Identities=28% Similarity=0.449 Sum_probs=99.0
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
|++++|.+..++ .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+++ .+..+++|++|++++|.++
T Consensus 68 L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 68 LALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp EECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC
Confidence 356777777654 57788888888888888887654 46788888888888888887755 4677888888888888887
Q ss_pred ccch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 79 ELPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
.++. .+..+++|++|++++|.+..++...++.+++|+.|++++|.++...
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 7754 4577888888888888888887776788888888888888887543
No 22
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3.5e-17 Score=111.56 Aligned_cols=125 Identities=29% Similarity=0.461 Sum_probs=110.0
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~ 79 (167)
+++++++..+|..+ .+++++|++++|+++.++. .+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.
T Consensus 13 ~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 90 (177)
T 2o6r_A 13 RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90 (177)
T ss_dssp ECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc
Confidence 56778888888644 4789999999999999864 57899999999999999998866 46899999999999999998
Q ss_pred cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++. .+..+++|++|++++|.+..++..++..+++|+.+++++|++.+..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 865 4688999999999999999999987889999999999999998753
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=2.2e-17 Score=117.15 Aligned_cols=124 Identities=27% Similarity=0.377 Sum_probs=108.8
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~ 79 (167)
+.+++++..+|..+. +++++|++++|.++.+ |..|..+++|+.|++++|.+..+|+ .+..+++|+.|++++|.++.
T Consensus 25 ~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 25 DCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp ECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence 456777888887543 8899999999999987 5778999999999999999999875 56899999999999999998
Q ss_pred cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++. .+..+++|++|++++|.+..+|.. +..+++|+.|++++|.+....
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCC
T ss_pred cChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccC
Confidence 864 568899999999999999999887 689999999999999998543
No 24
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.73 E-value=1.4e-17 Score=113.55 Aligned_cols=124 Identities=21% Similarity=0.310 Sum_probs=93.8
Q ss_pred CcccCCCCCCCchhhhCC-CCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQL-VRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l-~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~~ 78 (167)
|++++|+++.++. +..+ ++|++|++++|.++.+ ..+..+++|+.|++++|.++.+|+. +..+++|+.|++++|.++
T Consensus 24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp EECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred EEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC
Confidence 4677777777754 4444 4888888888888877 6677788888888888888877654 377888888888888887
Q ss_pred ccch--hHhcCCCcCEEEccCCcCCCCchH---HhhCCCCCceEEcccCCCCh
Q 031005 79 ELPA--SICNLIHLKSLCLNNNNIGQIPAN---LLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 79 ~l~~--~~~~~~~l~~l~l~~n~l~~~~~~---~~~~~~~L~~l~l~~n~~~~ 126 (167)
.+|. .+..+++|+++++++|.+..++.. ++..+++|+.++++.|....
T Consensus 102 ~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7765 677788888888888888777664 56778888888888777653
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=5.1e-17 Score=112.65 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=105.0
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCcCCc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
|+++++.+..+| .+..+++|++|++++|.++.++ .+..+++|+.|++++|.++. .++.+..+++|+.|++++|.++.
T Consensus 49 L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 49 ITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp EEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred EeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 467888888887 6889999999999999777664 67889999999999999985 46778889999999999999875
Q ss_pred -cchhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 80 -LPASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 80 -l~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.+..+..+++|++|++++|. ++.++. +..+++|+.|++++|.++..
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh
Confidence 56778889999999999998 888874 78899999999999988753
No 26
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.9e-17 Score=124.72 Aligned_cols=127 Identities=26% Similarity=0.358 Sum_probs=100.1
Q ss_pred CcccCCCCCCCchh-hh-CCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCc
Q 031005 1 MTLDGNRITSLPDE-LG-QLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNL 76 (167)
Q Consensus 1 L~l~~~~i~~l~~~-~~-~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~ 76 (167)
|++++|+|+.++.. +. .+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+++ .|..+++|+.|++++|.
T Consensus 44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence 46778888876544 44 7888888888888888876 468888888888888888887755 57788888888888888
Q ss_pred CCcc-chhHhcCCCcCEEEccCCcCCCCchHHh---hCCCCCceEEcccCCCChh
Q 031005 77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLL---KDCKALQNISLHNNPISMD 127 (167)
Q Consensus 77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~---~~~~~L~~l~l~~n~~~~~ 127 (167)
+..+ +..+..+++|++|++++|.+..+|..++ ..+++|+.|++++|.++..
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8766 5677888888888888888888888766 5688888888888888753
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=4.8e-17 Score=118.64 Aligned_cols=126 Identities=32% Similarity=0.475 Sum_probs=94.1
Q ss_pred cccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 5566666655 4456677777777777777776653 46777777777777777777654 4677777888888888776
Q ss_pred cc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 79 EL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 79 ~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.+ |..+..+++|+.|++++|.+..++...+..+++|+.+++++|++.++
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 55 66777788888888888888888877788888888888888888765
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=4.2e-17 Score=118.94 Aligned_cols=125 Identities=29% Similarity=0.418 Sum_probs=76.4
Q ss_pred cccCCCCCCCc-hhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCC-CCcc-chhhccCCCCCeEEcCCCcC
Q 031005 2 TLDGNRITSLP-DELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK-LKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 2 ~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~-~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
+++++.++.++ ..+..+++|++|++++|.++.+ +..+..+++|+.|++++|. +..+ +..+..+++|++|++++|.+
T Consensus 38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l 117 (285)
T 1ozn_A 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117 (285)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC
Confidence 45566666554 3456666677777776666665 4556666666666666665 5555 34556666666666666666
Q ss_pred Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+.+ +..+..+++|++|++++|.+..++...++.+++|+.|++++|.++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 554 3445556666666666666665555545566666666666665553
No 29
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2.5e-17 Score=134.24 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=108.0
Q ss_pred CCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhc
Q 031005 7 RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 86 (167)
Q Consensus 7 ~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~ 86 (167)
.+...+..+..+..|+.|++++|.+..+|..+..+++|+.|++++|.++.+|+.++.+++|+.|++++|.++.+|..++.
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 33334566888999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhcccc
Q 031005 87 LIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQME 133 (167)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 133 (167)
+.+|++|++++|.++.+|.. ++.+++|+.|++++|+++......+.
T Consensus 292 l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHh
Confidence 99999999999999999887 89999999999999999976555443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=1.5e-16 Score=122.71 Aligned_cols=128 Identities=28% Similarity=0.385 Sum_probs=114.4
Q ss_pred CcccCCCCCC-CchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITS-LPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+.. +|..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 3567777874 466789999999999999999986 56889999999999999999987 56788999999999999999
Q ss_pred Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
+.+ |..+..+++|++|++++|.+..++...+..+++|+.+++++|++.+..
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 877 678899999999999999999999887899999999999999999763
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=4.7e-17 Score=118.14 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=106.2
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.++. .+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 112 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence 4678888887654 6888999999999999998876 47888999999999999998775 5688899999999999988
Q ss_pred Cccch-hHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCCChhhhc
Q 031005 78 GELPA-SICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPISMDQFQ 130 (167)
Q Consensus 78 ~~l~~-~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 130 (167)
..++. .+..+++|++|++++|.+.. +|.. ++.+++|+.|++++|.++.....
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGG
T ss_pred cccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCHH
Confidence 87754 67888899999999999976 4444 78899999999999988865333
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.9e-16 Score=109.76 Aligned_cols=122 Identities=21% Similarity=0.315 Sum_probs=105.5
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCc-C
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNL-I 77 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~-~ 77 (167)
|++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|+.|++++|.++. .++.+..+++|++|++++|. +
T Consensus 71 L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 71 LTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp EEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred EEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence 467788776664 68899999999999999997 67889999999999999999995 56788999999999999998 8
Q ss_pred CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+.++ .+..+++|++|++++|.+..++. +..+++|+.+++++|++..
T Consensus 150 ~~~~-~l~~l~~L~~L~l~~n~i~~~~~--l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 150 TDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCG-GGGGCSSCCEEECTTBCCCCCTT--GGGCSSCCEEEECBC----
T ss_pred cccH-hhcCCCCCCEEECCCCCCcChHH--hccCCCCCEEEeeCcccCC
Confidence 8887 68899999999999999988873 8899999999999999753
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=2.9e-17 Score=116.97 Aligned_cols=125 Identities=16% Similarity=0.258 Sum_probs=103.7
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCc-Cccccc-cccCCCCCcEEEeeC-CCCCccch-hhccCCCCCeEEcCCC
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNM-LTCLPE-TIGSLRNLVLLNVSN-NKLKSLPE-SIGSCYSLEELQANDN 75 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~-l~~l~~-~~~~l~~L~~l~l~~-n~~~~~~~-~~~~l~~L~~l~l~~~ 75 (167)
|++++|+++.++. .+..+++|++|++++|. ++.+++ .|..+++|+.|++++ |.++.+++ .|..+++|++|++++|
T Consensus 36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115 (239)
T ss_dssp EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence 4678888887765 68889999999999997 888764 788899999999998 89988864 6788899999999999
Q ss_pred cCCccchhHhcCCCcC---EEEccCC-cCCCCchHHhhCCCCCc-eEEcccCCCCh
Q 031005 76 LIGELPASICNLIHLK---SLCLNNN-NIGQIPANLLKDCKALQ-NISLHNNPISM 126 (167)
Q Consensus 76 ~~~~l~~~~~~~~~l~---~l~l~~n-~l~~~~~~~~~~~~~L~-~l~l~~n~~~~ 126 (167)
.++.+|. +..+++++ ++++++| .+..++...+..+++|+ .+++++|.++.
T Consensus 116 ~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 116 GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence 8888876 77777777 8888888 88888777778888888 88888888774
No 34
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.2e-16 Score=111.43 Aligned_cols=125 Identities=27% Similarity=0.392 Sum_probs=108.2
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~ 79 (167)
+.+++++..+|..+ .+++++|++++|+++.++. .+..+++|+.|++++|.++.+++ .+..+++|++|++++|.++.
T Consensus 13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 13 ECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp ECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 34566777787644 4689999999999998864 57899999999999999998866 46889999999999999998
Q ss_pred cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++. .+..+++|++|++++|.+..++...+..+++|+.|++++|.++...
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 864 4688999999999999999998887899999999999999988543
No 35
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.6e-16 Score=114.94 Aligned_cols=120 Identities=27% Similarity=0.340 Sum_probs=85.3
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++|+++.++ .+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.+|+... ++|+.|++++|.++.+
T Consensus 46 L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 46 FNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDT 121 (263)
T ss_dssp EECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBS
T ss_pred EECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCC
Confidence 356777777776 57777888888888888877766 7777788888888887777654322 6777777777777666
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.++..
T Consensus 122 ~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 122 D-SLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp G-GGTTCTTCCEEECTTSCCCBCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred h-hhcCcccccEEECCCCcCCCChH--HccCCCCCEEECCCCcCcch
Confidence 4 36667777777777777766653 66777777777777777643
No 36
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=7.3e-17 Score=121.59 Aligned_cols=128 Identities=24% Similarity=0.350 Sum_probs=112.6
Q ss_pred CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|+|..++ ..|..+++|++|++++|+++.++ ..|..+++|+.|++++|.++.+ +..|..+++|+.|++++|.+
T Consensus 69 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 69 LLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 478899999875 46899999999999999999986 4689999999999999999988 55889999999999999999
Q ss_pred CccchhH----hcCCCcCEEEccCCcCCCCchHHhhCCCC--CceEEcccCCCChhh
Q 031005 78 GELPASI----CNLIHLKSLCLNNNNIGQIPANLLKDCKA--LQNISLHNNPISMDQ 128 (167)
Q Consensus 78 ~~l~~~~----~~~~~l~~l~l~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~ 128 (167)
+.+|..+ ..+++|++|++++|.+..++...+..++. ++.+++++|++.++.
T Consensus 149 ~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 9997654 56899999999999999999877888887 489999999998753
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=8.7e-17 Score=118.99 Aligned_cols=125 Identities=25% Similarity=0.434 Sum_probs=97.6
Q ss_pred CcccCCCCC---CCchhhhCCCCCCEEEeeC-CcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCC
Q 031005 1 MTLDGNRIT---SLPDELGQLVRLERLSILG-NMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQAND 74 (167)
Q Consensus 1 L~l~~~~i~---~l~~~~~~l~~L~~L~l~~-n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~ 74 (167)
|+++++.+. .+|..+..+++|++|++++ |.+.. +|..+..+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 456777777 4788888888888888884 77774 6778888888888888888887 5677788888888888888
Q ss_pred CcCC-ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCC-CCceEEcccCCCCh
Q 031005 75 NLIG-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCK-ALQNISLHNNPISM 126 (167)
Q Consensus 75 ~~~~-~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~-~L~~l~l~~n~~~~ 126 (167)
|.+. .+|..+..+++|++|++++|.+. .+|.. +..++ .|+.+++++|.+..
T Consensus 135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE
T ss_pred CccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec
Confidence 8886 56777888888888888888885 66665 56665 78888888887763
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.68 E-value=1.3e-16 Score=121.04 Aligned_cols=135 Identities=20% Similarity=0.299 Sum_probs=112.9
Q ss_pred cccCCCCCCCchh-hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
+++++.++.+|.. +..+++|++|++++|.++.++ ..+..+++|+.|++++|.+..+++ .+..+++|++|++++|.++
T Consensus 51 ~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp EEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence 5667777778765 678999999999999999876 578999999999999999998854 5788999999999999999
Q ss_pred ccchh-HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005 79 ELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE 136 (167)
Q Consensus 79 ~l~~~-~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 136 (167)
.+|.. +..+++|++|++++|.+..+++..+..+++|+.|++++|.++......++.++
T Consensus 131 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~ 189 (390)
T 3o6n_A 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccc
Confidence 88765 57889999999999999888777788999999999999998866555555443
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=122.64 Aligned_cols=127 Identities=24% Similarity=0.295 Sum_probs=87.9
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~ 77 (167)
|++++|+++.++. .+..+++|++|++++|.++.++ ..|..+++|++|++++|.++.+++. +..+++|++|++++|.+
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence 3566677776644 5677777777777777777653 4577777777777777777777554 66777777777777777
Q ss_pred Cccch--hHhcCCCcCEEEccCC-cCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 78 GELPA--SICNLIHLKSLCLNNN-NIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 78 ~~l~~--~~~~~~~l~~l~l~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+.+|. .+..+++|++|++++| .+..++...+..+++|+.+++++|.+...
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 76654 5666777777777777 45666555566777777777777776643
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.8e-17 Score=117.02 Aligned_cols=123 Identities=21% Similarity=0.363 Sum_probs=76.3
Q ss_pred CcccCCC-CCCCch-hhhCCCCCCEEEeeC-CcCcccc-ccccCCCCCcEEEeeCCCCCccchhhccCCCCC---eEEcC
Q 031005 1 MTLDGNR-ITSLPD-ELGQLVRLERLSILG-NMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLE---ELQAN 73 (167)
Q Consensus 1 L~l~~~~-i~~l~~-~~~~l~~L~~L~l~~-n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~---~l~l~ 73 (167)
|++++|. ++.+++ .|..+++|++|++++ |.++.++ ..|..+++|+.|++++|.++.+|+ +..+++|+ .++++
T Consensus 60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~ 138 (239)
T 2xwt_C 60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT 138 (239)
T ss_dssp EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE
T ss_pred EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECC
Confidence 3566665 666644 566777777777776 7777765 456677777777777776666654 55555555 66666
Q ss_pred CC-cCCccch-hHhcCCCcC-EEEccCCcCCCCchHHhhCCCCCceEEcccCC-CC
Q 031005 74 DN-LIGELPA-SICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNISLHNNP-IS 125 (167)
Q Consensus 74 ~~-~~~~l~~-~~~~~~~l~-~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~-~~ 125 (167)
+| .++.++. .+..+++++ .+++++|.+..++..++.. ++|+.+++++|+ ++
T Consensus 139 ~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLT 193 (239)
T ss_dssp SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCC
T ss_pred CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcc
Confidence 66 5655543 355556666 6666666665555544444 556666666663 54
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=1.6e-16 Score=126.56 Aligned_cols=135 Identities=24% Similarity=0.311 Sum_probs=111.0
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.+++ .|..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 4678888886644 788999999999999999987 46788999999999999999887 66888999999999999999
Q ss_pred Cccc-hhHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005 78 GELP-ASICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPISMDQFQQMEGFE 136 (167)
Q Consensus 78 ~~l~-~~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 136 (167)
..++ ..++.+++|++|++++|.+.. +|.. ++.+++|+.|++++|.+.......+..+.
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred ccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 8775 678889999999999999864 5554 78999999999999988865444444433
No 42
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.7e-16 Score=124.88 Aligned_cols=106 Identities=29% Similarity=0.428 Sum_probs=90.9
Q ss_pred CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCc
Q 031005 20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNN 99 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~ 99 (167)
.|+.|++++|.++.+|. +..+++|+.|++++|.++.+|+.++.+++|+.|++++|.++.+| .++.+++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58889999999988876 88888999999999999988888888999999999999988887 78888999999999999
Q ss_pred CCCCc-hHHhhCCCCCceEEcccCCCChh
Q 031005 100 IGQIP-ANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 100 l~~~~-~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+..++ +..+..+++|+.|++++|+++..
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 98773 33478889999999999988754
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.5e-16 Score=126.79 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=105.9
Q ss_pred CCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccch-
Q 031005 6 NRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA- 82 (167)
Q Consensus 6 ~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~~- 82 (167)
.+++++|..+. +.++.|++++|+|+.++ ..|..+++|++|++++|.++.+++ +|..+++|++|++++|.++.+|.
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 35667876542 47999999999999987 579999999999999999999965 68999999999999999998874
Q ss_pred hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
.|..+++|++|++++|.+..++...++.+++|+.|++++|.+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 68899999999999999999988778999999999999999863
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=2.9e-17 Score=120.86 Aligned_cols=127 Identities=19% Similarity=0.238 Sum_probs=75.5
Q ss_pred cccCCCCCCCch--hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCc--cchhhccCCCCCeEEcCCCc
Q 031005 2 TLDGNRITSLPD--ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNL 76 (167)
Q Consensus 2 ~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~l~~L~~l~l~~~~ 76 (167)
++++|.+..++. .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.+.. +|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 344444444432 345555555556555555543 3445556666666666666553 35556666666666666666
Q ss_pred CCcc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++.+ |..+..+++|++|++++|.+..++...+..+++|+.|++++|.+....
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 6655 455666667777777777776665544666677777777777666543
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.8e-16 Score=116.56 Aligned_cols=127 Identities=25% Similarity=0.294 Sum_probs=105.1
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcc--ccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTC--LPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL 76 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~ 76 (167)
|++++|.+..+ +..+..+++|++|++++|.++. +|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 46777888744 5667889999999999999875 678888999999999999999977 5578889999999999999
Q ss_pred CCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCC-CCceEEcccCCCChh
Q 031005 77 IGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCK-ALQNISLHNNPISMD 127 (167)
Q Consensus 77 ~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~ 127 (167)
++.++ ..+..+++|++|++++|.+...+...+..++ +|+.+++++|++.+.
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 98775 4678889999999999999766655567774 899999999999865
No 46
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1e-15 Score=113.06 Aligned_cols=117 Identities=23% Similarity=0.420 Sum_probs=55.6
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~ 82 (167)
+++|.+..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.++.
T Consensus 70 L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 70 LKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP 146 (308)
T ss_dssp CCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred ccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc
Confidence 33444443333 344444444444444444332 23444444444444444444432 4444455555555554444433
Q ss_pred hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+..+++|++|++++|.+..++. +..+++|+.|++++|.++
T Consensus 147 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 147 -LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred -ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 4455555555555555555544 455555556665555554
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.5e-15 Score=112.16 Aligned_cols=117 Identities=26% Similarity=0.366 Sum_probs=59.0
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~ 82 (167)
++++.+..++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++.
T Consensus 48 l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 124 (308)
T 1h6u_A 48 AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP 124 (308)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG
T ss_pred eeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh
Confidence 4444444443 34455555555555555555444 455555555555555555442 34445555555555555544432
Q ss_pred hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+..+++|++|++++|.+..++. +..+++|+.|++++|.++
T Consensus 125 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred -hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 4445555555555555544444 445555555555555544
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=122.21 Aligned_cols=130 Identities=20% Similarity=0.242 Sum_probs=105.6
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~ 78 (167)
+++++++++.+|..+. +++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++
T Consensus 5 l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp EECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred EecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 4678888888887665 78999999999988875 5788889999999999998877 567888899999999999888
Q ss_pred ccchhHhcCCCcCEEEccCCcCCCC--chHHhhCCCCCceEEcccCCCChhhhccccch
Q 031005 79 ELPASICNLIHLKSLCLNNNNIGQI--PANLLKDCKALQNISLHNNPISMDQFQQMEGF 135 (167)
Q Consensus 79 ~l~~~~~~~~~l~~l~l~~n~l~~~--~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 135 (167)
.+|.. .+++|++|++++|.+..+ |. .++.+++|+.|++++|.+....+..+..+
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L 138 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGGGGGGGTTS
T ss_pred ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccchhhccccccc
Confidence 88765 788899999999988654 34 37888899999999998887655555444
No 49
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1.7e-15 Score=111.02 Aligned_cols=117 Identities=29% Similarity=0.425 Sum_probs=54.6
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~ 82 (167)
+++|+++.+++ +..+++|++|++++|.++.++. +..+++|+.|++++|.++.+ +.+..+++|+.|++++|.++.+ .
T Consensus 75 L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~ 150 (291)
T 1h6t_A 75 LNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-T 150 (291)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-G
T ss_pred ccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-h
Confidence 34444444333 4444444444444444444322 44444444444444444443 2344444455555555544444 2
Q ss_pred hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
.+..+++|++|++++|.+..++. +..+++|+.|++++|.++
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 34445555555555555544443 445555555555555554
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=4.3e-16 Score=115.34 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=117.0
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCcccc-ccc-cCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLP-ETI-GSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~-~~~-~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.+++ .+..+++|++|++++|.++.++ ..+ ..+++|+.|++++|.++.++.. ..+++|++|++++|.+
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKL 203 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCC
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcC
Confidence 4677788887644 6788899999999999998753 445 4789999999999999987543 3588999999999999
Q ss_pred CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh----hccccchHHHHHHHHHhhhh
Q 031005 78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ----FQQMEGFEEFEARRRKKFDK 148 (167)
Q Consensus 78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~l~~l~~~~~~~~~~ 148 (167)
+.+|..+..+++|++|++++|.+..+|.. +..+++|+.+++++|++.+.. +..+..++.+.......+..
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 99988899999999999999999988876 788999999999999999432 33455566666665555443
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1e-15 Score=111.13 Aligned_cols=127 Identities=33% Similarity=0.500 Sum_probs=95.3
Q ss_pred CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCc--cchhhccCCCCCeEEcCCCc
Q 031005 1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKS--LPESIGSCYSLEELQANDNL 76 (167)
Q Consensus 1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~--~~~~~~~l~~L~~l~l~~~~ 76 (167)
|++++|.+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 456777777554 557777888888888887777653 57777788888888887775 46677777778888887777
Q ss_pred CCccc-hh---------------------------HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 77 IGELP-AS---------------------------ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 77 ~~~l~-~~---------------------------~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
++.++ .. .....+|+.|++++|.++.++..++..+++|+.+++++|++.+.
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 66442 11 12223688899999999989888788999999999999999975
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=6.4e-17 Score=119.72 Aligned_cols=122 Identities=25% Similarity=0.457 Sum_probs=78.3
Q ss_pred cccC-CCCC-CCchhhhCCCCCCEEEeeCCcCc-cccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005 2 TLDG-NRIT-SLPDELGQLVRLERLSILGNMLT-CLPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 2 ~l~~-~~i~-~l~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~ 77 (167)
++++ |.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 4452 5555 56777777777777777777776 46667777777777777777777 4566677777777777777777
Q ss_pred C-ccchhHhcCC-CcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005 78 G-ELPASICNLI-HLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 78 ~-~l~~~~~~~~-~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+ .+|..+..+. +|+++++++|.+. .+|.. +..+. |+.|++++|.++
T Consensus 162 ~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp EEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEE
T ss_pred cCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCccc
Confidence 5 5666666665 6666666666663 33332 34443 555555555444
No 53
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2e-17 Score=134.75 Aligned_cols=126 Identities=30% Similarity=0.428 Sum_probs=107.3
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|+|++|.+..+|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+|+.++.+++|++|++++|.++.+
T Consensus 229 L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp EECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred EECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc
Confidence 57899999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCC-CCceEEcccCCCCh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCK-ALQNISLHNNPISM 126 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~ 126 (167)
|..++.+++|++|++++|.+...++..+..+. .+..+++++|.++.
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 98899999999999999999765554443321 11224455555543
No 54
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1.7e-15 Score=111.02 Aligned_cols=121 Identities=30% Similarity=0.409 Sum_probs=107.1
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|+++++.+..++. +..+++|++|++++|+++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+
T Consensus 51 L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~ 127 (291)
T 1h6t_A 51 IIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI 127 (291)
T ss_dssp EECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC
T ss_pred EEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC
Confidence 4677888888854 8889999999999999999877 8999999999999999998754 88999999999999999887
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
..+..+++|++|++++|.+..++. +..+++|+.|++++|.++..
T Consensus 128 -~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 128 -NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp -GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCC
T ss_pred -hhhcCCCCCCEEEccCCcCCcchh--hccCCCCCEEEccCCccccc
Confidence 457889999999999999988843 88999999999999999854
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=7.1e-16 Score=122.17 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=105.4
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~ 78 (167)
+++++++++.+|..+. ++++.|++++|.++.++ ..|..+++|++|++++|.++.+ |..|..+++|++|++++|.++
T Consensus 36 l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 36 VDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp EECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 3677888888887653 78899999999998876 5788899999999999998877 557888899999999999988
Q ss_pred ccchhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChhhhccccch
Q 031005 79 ELPASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMDQFQQMEGF 135 (167)
Q Consensus 79 ~l~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 135 (167)
.+|.. .+++|++|++++|.+..++. ..++.+++|+.|++++|.+....+..+..+
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L 169 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc
Confidence 88766 78889999999999877652 447888999999999998876555444443
No 56
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=5.2e-16 Score=112.27 Aligned_cols=121 Identities=27% Similarity=0.275 Sum_probs=107.5
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++|+++.+++ +..+++|++|++++|+++.++.... ++|+.|++++|.++.++ .+..+++|+.|++++|.++.+
T Consensus 68 L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 68 LHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp EECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC
Confidence 5788999998877 8999999999999999999875433 89999999999999875 588999999999999999988
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
+ .+..+++|+.|++++|.+..+. .+..+++|+.+++++|++....
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~~--~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBCT--TSTTCCCCCEEEEEEEEEECCC
T ss_pred h-HHccCCCCCEEECCCCcCcchH--HhccCCCCCEEeCCCCcccCCc
Confidence 6 6888999999999999998873 3789999999999999987653
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=120.33 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=16.4
Q ss_pred hhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCC
Q 031005 15 LGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLK 55 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~ 55 (167)
|..+++|++|++++|.++.++. .|..+++|+.|++++|.+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 3334444444444444443332 2333444444444444333
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=4.3e-16 Score=120.47 Aligned_cols=81 Identities=26% Similarity=0.344 Sum_probs=53.8
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.|+.+ +..|..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 35666777654 455677777777777777777654 566677777777777777776654 356667777777777666
Q ss_pred Cccc
Q 031005 78 GELP 81 (167)
Q Consensus 78 ~~l~ 81 (167)
+.++
T Consensus 160 ~~~~ 163 (452)
T 3zyi_A 160 ESIP 163 (452)
T ss_dssp CEEC
T ss_pred ceeC
Confidence 5443
No 59
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=123.22 Aligned_cols=125 Identities=27% Similarity=0.416 Sum_probs=71.0
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.+ +..|..+++|++|++++|.++.+ |..|..+++|+.|++++|.++.+|+ .|..+++|++|++++|.+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 35666666655 34566677777777777766664 4566666677777777766666654 345666666666666665
Q ss_pred Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
..+ +..+..+++|++|++++|.+..++...+..+++|+.|++++|.+.
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 543 334444455555555555444433333444444444444444443
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=121.02 Aligned_cols=129 Identities=26% Similarity=0.372 Sum_probs=112.5
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+..+ |..|..+++|++|++++|.++.+|. .|..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus 61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 46788888866 7789999999999999999999875 578999999999999999977 55788999999999999999
Q ss_pred Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005 78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF 129 (167)
Q Consensus 78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 129 (167)
..+ +..+..+++|+.|++++|.+..++...+..+++|+.|++++|.+.....
T Consensus 141 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 866 4578888999999999999999998888999999999999998875433
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=119.33 Aligned_cols=97 Identities=25% Similarity=0.386 Sum_probs=76.7
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|++..+ +..|..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .+..+++|++|++++|.+
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 46888899876 467899999999999999999875 678999999999999999998866 688899999999999988
Q ss_pred Cccch-hHhcCCCcCEEEccC
Q 031005 78 GELPA-SICNLIHLKSLCLNN 97 (167)
Q Consensus 78 ~~l~~-~~~~~~~l~~l~l~~ 97 (167)
+.++. .+..+++|++|++++
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCC
T ss_pred cccCHHHhhhCcccCEeCCCC
Confidence 76543 333333444444433
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=5e-16 Score=120.09 Aligned_cols=57 Identities=30% Similarity=0.464 Sum_probs=32.8
Q ss_pred cccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccc
Q 031005 2 TLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP 58 (167)
Q Consensus 2 ~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~ 58 (167)
++++|.+..+ +..|..+++|++|++++|.++.++. .|..+++|+.|++++|.++.++
T Consensus 105 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred ECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence 4556666644 3445666666666666666665543 3555666666666666555443
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=5e-16 Score=123.98 Aligned_cols=135 Identities=20% Similarity=0.299 Sum_probs=112.1
Q ss_pred cccCCCCCCCchh-hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRITSLPDE-LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
+++++.+..+|+. +..+++|++|++++|.++.++ ..|..+++|+.|++++|.++.+++ .++.+++|+.|++++|.++
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 4566777777665 678999999999999999875 588999999999999999998855 5688999999999999998
Q ss_pred ccchh-HhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005 79 ELPAS-ICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE 136 (167)
Q Consensus 79 ~l~~~-~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 136 (167)
.+|.. +..+++|++|++++|.+..+++..++.+++|+.|++++|.+.......++.+.
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 195 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCS
T ss_pred CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhh
Confidence 88764 57889999999999999888776688999999999999998866555555443
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=9.7e-16 Score=116.28 Aligned_cols=124 Identities=22% Similarity=0.222 Sum_probs=104.6
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
++++|.++.. +.+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+
T Consensus 232 ~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~ 310 (390)
T 3o6n_A 232 KLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 310 (390)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec
Confidence 4566666655 4578889999999999998875 6788889999999999999998877777889999999999999888
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQF 129 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 129 (167)
|..+..+++|+.|++++|.+..++ +..+++|+.+++++|++.+...
T Consensus 311 ~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred CccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence 888888899999999999998875 5678899999999999987643
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6e-16 Score=104.50 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=99.8
Q ss_pred hCCCCCCEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc-cchhHhcCCCcCE
Q 031005 16 GQLVRLERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE-LPASICNLIHLKS 92 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~-l~~~~~~~~~l~~ 92 (167)
...++++.|++++|.++ .+|..+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.+.. +|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34578999999999999 7888889999999999999999988 778899999999999999987 7788888999999
Q ss_pred EEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005 93 LCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 93 l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
|++++|.+..++. ..+..+++|+.|++++|+++..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 9999999998864 4588999999999999998754
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=1.5e-15 Score=119.72 Aligned_cols=126 Identities=24% Similarity=0.323 Sum_probs=89.5
Q ss_pred cccCCCCCCCc---hhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhh-----------------
Q 031005 2 TLDGNRITSLP---DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESI----------------- 61 (167)
Q Consensus 2 ~l~~~~i~~l~---~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~----------------- 61 (167)
++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|.++.+|..+
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh
Confidence 45666666554 2356677777777777777777666666666666666666665543322
Q ss_pred -ccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 62 -GSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 62 -~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
..+++|++|++++|.++.+|. ...+++|++|++++|.+..+++..+..+++|+.+++++|++.+..
T Consensus 447 ~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 447 SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 256678888888888877765 456788888888888888777766788888999999999887653
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=119.27 Aligned_cols=127 Identities=24% Similarity=0.362 Sum_probs=84.7
Q ss_pred cccCCCCCC-CchhhhCCCCCCEEEeeCCcCcc---ccccccCCCCCcEEEeeCCCCCc-cchh-hccC-----------
Q 031005 2 TLDGNRITS-LPDELGQLVRLERLSILGNMLTC---LPETIGSLRNLVLLNVSNNKLKS-LPES-IGSC----------- 64 (167)
Q Consensus 2 ~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~l~~---l~~~~~~l~~L~~l~l~~n~~~~-~~~~-~~~l----------- 64 (167)
++++|.+.. +|..+..+++|++|++++|+++. +|..+..+++|+.|++++|.+.. +|.. +..+
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 455555553 44555555555555555555553 23345555555555555555554 4332 2222
Q ss_pred -----------CCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 65 -----------YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 65 -----------~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++|+.|++++|.++.+|..+..+++|+++++++|.+..+|...+..+++|+.+++++|++.++.
T Consensus 410 ~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 410 ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 5677777777777778877778889999999999998888876788899999999999998753
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=3.8e-16 Score=124.43 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=102.4
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.+ |..|..+++|++|++++|.++.+ |..|..+++|++|++++|.+..+ |..+..+++|++|++++|.+
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 46788888866 56788899999999999998875 57788899999999999988876 55788889999999999988
Q ss_pred Ccc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 78 GEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 78 ~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+.+ +..+..+++|++|++++|.+..++...+..+++|+.|++++|.+...
T Consensus 118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 876 56677888888999988888766332245588888888888888743
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=7.4e-16 Score=121.75 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=108.4
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.+ +.+|..+++|++|++++|.++.++ ..|..+++|++|++++|.++.++ ..|..+++|++|++++|.+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 46788888866 446888999999999999998875 57888999999999999998775 5788899999999999998
Q ss_pred Cccch-hHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCCChhhhcccc
Q 031005 78 GELPA-SICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPISMDQFQQME 133 (167)
Q Consensus 78 ~~l~~-~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 133 (167)
+.++. .++.+++|++|++++|.+.. +|.. ++.+++|+.|++++|.+.......+.
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred ccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHcc
Confidence 87754 68888999999999999865 4554 78899999999999988765433333
No 70
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=4.3e-16 Score=103.21 Aligned_cols=119 Identities=27% Similarity=0.325 Sum_probs=107.4
Q ss_pred CcccCCCCC--CCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCc-cchhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRIT--SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKS-LPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC
Confidence 468889998 7888889999999999999999988 778999999999999999997 677777899999999999999
Q ss_pred Cccc--hhHhcCCCcCEEEccCCcCCCCch---HHhhCCCCCceEEcc
Q 031005 78 GELP--ASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISLH 120 (167)
Q Consensus 78 ~~l~--~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l~ 120 (167)
+.++ ..+..+++|+++++++|.+..++. ..+..+++|+.++++
T Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9875 788999999999999999988876 668999999999876
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=1.1e-15 Score=113.67 Aligned_cols=123 Identities=28% Similarity=0.396 Sum_probs=71.6
Q ss_pred cccCCCCC---CCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcC
Q 031005 2 TLDGNRIT---SLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 2 ~l~~~~i~---~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~ 77 (167)
++++|.+. ..+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 45566664 234556667777777777766666554332 5566666666666654 34555566666666666666
Q ss_pred Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+.++ ..+..+++|++|++++|.+..+|.. +..+++|+.+++++|+++..
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCC
T ss_pred ceeChhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCcc
Confidence 5443 2455556666666666666655554 45556666666666665543
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=8e-16 Score=115.34 Aligned_cols=123 Identities=23% Similarity=0.281 Sum_probs=108.1
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccc-hhhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLP-ESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l~~~~~~~ 79 (167)
+.+++.++.+|..+. +++++|++++|.++.++. .+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.
T Consensus 37 ~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp ECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 456778888887654 589999999999999875 7899999999999999999884 578999999999999999998
Q ss_pred cchh-HhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCC-CCh
Q 031005 80 LPAS-ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNP-ISM 126 (167)
Q Consensus 80 l~~~-~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~-~~~ 126 (167)
++.. +..+++|++|++++|.+..++. ..+..+++|+.|++++|. +..
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 8765 8889999999999999998887 568899999999999984 554
No 73
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=2.4e-15 Score=101.99 Aligned_cols=107 Identities=27% Similarity=0.396 Sum_probs=94.9
Q ss_pred CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEEEccC
Q 031005 20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNN 97 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l~l~~ 97 (167)
..+.+++++|.++.+|..+. ++++.|++++|.++.+ |..|..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45789999999999987653 7899999999999988 5578899999999999999998865 467899999999999
Q ss_pred CcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 98 NNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
|.+..++...+..+++|+.|++++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999999887899999999999999998763
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=3.1e-16 Score=123.56 Aligned_cols=127 Identities=23% Similarity=0.272 Sum_probs=98.0
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.+ |..+..+++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ .+..+++|++|++++|.+
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 46777777755 556788888888888888888764 567888888888888888887755 478888888888888888
Q ss_pred Ccc--chhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 78 GEL--PASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 78 ~~l--~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+.+ |..++.+++|++|++++|. ++.++...++.+++|+.|++++|.+...
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 743 5567778888888888887 5677665578888888888888887753
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=1.9e-15 Score=112.22 Aligned_cols=121 Identities=27% Similarity=0.432 Sum_probs=60.7
Q ss_pred cccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
++++|.++.++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+. ++|++|++++|.++.
T Consensus 58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITK 135 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCB
T ss_pred ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccc
Confidence 455566665543 456666666666666666654 4556666666666666666655544332 345555555554444
Q ss_pred cc-hhHhcCCCcCEEEccCCcCCC--CchHHhhCCCCCceEEcccCCC
Q 031005 80 LP-ASICNLIHLKSLCLNNNNIGQ--IPANLLKDCKALQNISLHNNPI 124 (167)
Q Consensus 80 l~-~~~~~~~~l~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n~~ 124 (167)
++ ..+..+++|+++++++|.+.. +....+..+++|+.+++++|.+
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 32 234444444444444444421 2222234444444444444433
No 76
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=4.1e-15 Score=101.26 Aligned_cols=106 Identities=26% Similarity=0.377 Sum_probs=94.8
Q ss_pred CCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCccchh-HhcCCCcCEEEccCC
Q 031005 21 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSLCLNNN 98 (167)
Q Consensus 21 L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~l~~~-~~~~~~l~~l~l~~n 98 (167)
-+.+++++++++.+|..+. ++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999987664 8899999999999988 55788999999999999999988764 578999999999999
Q ss_pred cCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 99 NIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 99 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
.+..++...+..+++|+.|++++|++.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999999887899999999999999999753
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=9.4e-16 Score=114.07 Aligned_cols=122 Identities=25% Similarity=0.406 Sum_probs=80.4
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~ 79 (167)
++++|++..+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.
T Consensus 178 ~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 178 RISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp BCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred ECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 445555555544332 56667777777776654 556677777777777777776643 56677777777777777777
Q ss_pred cchhHhcCCCcCEEEccCCcCCCCchHHhhCC------CCCceEEcccCCCC
Q 031005 80 LPASICNLIHLKSLCLNNNNIGQIPANLLKDC------KALQNISLHNNPIS 125 (167)
Q Consensus 80 l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~------~~L~~l~l~~n~~~ 125 (167)
+|..+..+++|+++++++|.++.++...+... ..++.+++++|++.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 77667777777777777777766665544432 45677777777765
No 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=4.7e-15 Score=118.55 Aligned_cols=106 Identities=28% Similarity=0.387 Sum_probs=47.9
Q ss_pred hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEE
Q 031005 15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC 94 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~ 94 (167)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+ +.+..+++|+.|++++|.+..+ ..+..+++|+.|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 159 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEE
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEE
Confidence 333344444444444433332 233444444444444444433 2234444444444444444443 3344445555555
Q ss_pred ccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 95 LNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+++|.+..+++ +..+++|+.|++++|.++
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 55555544443 445555555555555554
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.7e-15 Score=117.18 Aligned_cols=126 Identities=20% Similarity=0.198 Sum_probs=105.9
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccc-ccccc-CCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCL-PETIG-SLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.++.+ |..+..+++|++|++++|.++.+ |..+. .+++|+.|++++|.++.+++ ...+++|+.|++++|.+
T Consensus 125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCC
Confidence 46777888765 45678889999999999998874 55664 78899999999999987754 34588999999999999
Q ss_pred CccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 78 GELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 78 ~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
+.+|..+..+++|+.|++++|.+..+|.. +..+++|+.+++++|++.+..
T Consensus 204 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHH
T ss_pred CCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcc
Confidence 98888888999999999999999988876 788899999999999999543
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=8.1e-15 Score=109.39 Aligned_cols=109 Identities=27% Similarity=0.427 Sum_probs=59.2
Q ss_pred hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEE
Q 031005 15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLC 94 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~ 94 (167)
+..+++|++|++++|.++.++. +..+++|+.|++++|.++.+ +.+..+++|+.+++++|.++.++ .+..+++|+.++
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 293 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLF 293 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEE
Confidence 4445555555555555555443 45555555555555555544 23455555555555555555542 345555566666
Q ss_pred ccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 95 LNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 95 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+++|.+...+...+..+++|+.+++++|+++.
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 66666555544445556666666666665553
No 81
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=1.7e-15 Score=120.69 Aligned_cols=135 Identities=16% Similarity=0.269 Sum_probs=114.9
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
+.++++++.+|..+. +++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|..+++|++|++++|.++.
T Consensus 17 ~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 17 QCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp ECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred EccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 456677888887654 78999999999999976 5899999999999999999988 5578999999999999999987
Q ss_pred c-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh----hhhccccchHHH
Q 031005 80 L-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM----DQFQQMEGFEEF 138 (167)
Q Consensus 80 l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~----~~~~~~~~l~~l 138 (167)
+ |..++.+++|++|++++|.+..++...++.+++|+.|++++|.+.. ..+..+.+++.+
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 7 7889999999999999999988886568999999999999999874 234444444433
No 82
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=3e-15 Score=115.41 Aligned_cols=130 Identities=22% Similarity=0.286 Sum_probs=109.3
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCc-cc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLT-CL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL 76 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~-~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~ 76 (167)
|++++|.+..+ |..+..+++|++|++++|.+. .+ +..|..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence 57888999866 677899999999999999987 45 46789999999999999999977 6688999999999999999
Q ss_pred CCc-cch--hHhcCCCcCEEEccCCcCCCC-chHHhhCCCCCceEEcccCCCChhhhc
Q 031005 77 IGE-LPA--SICNLIHLKSLCLNNNNIGQI-PANLLKDCKALQNISLHNNPISMDQFQ 130 (167)
Q Consensus 77 ~~~-l~~--~~~~~~~l~~l~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~~ 130 (167)
++. ++. .+..+++|++|++++|.+..+ |...+..+++|+.|++++|.+......
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 875 333 378899999999999999776 445578999999999999988754433
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.7e-15 Score=119.79 Aligned_cols=123 Identities=22% Similarity=0.218 Sum_probs=106.4
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
++++|.++.. ..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+
T Consensus 238 ~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i 316 (597)
T 3oja_B 238 KLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316 (597)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc
Confidence 4566666653 5578899999999999999885 6788999999999999999999888788899999999999999999
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
|..+..+++|+.|++++|.+..++ +..++.|+.|++++|++.+..
T Consensus 317 ~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence 888888999999999999998876 567889999999999998654
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=8.1e-15 Score=117.22 Aligned_cols=130 Identities=28% Similarity=0.392 Sum_probs=111.7
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|+++++.+..++ .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+
T Consensus 48 L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 48 IIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp CBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC
T ss_pred EECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC
Confidence 567888888886 58899999999999999999876 889999999999999999875 688999999999999999887
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh-hccccchH
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ-FQQMEGFE 136 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~l~ 136 (167)
+ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.+.... +..+..++
T Consensus 125 ~-~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~ 178 (605)
T 1m9s_A 125 N-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178 (605)
T ss_dssp G-GGGGCTTCSEEECCSSCCCCCGG--GGSCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred c-cccCCCccCEEECCCCccCCchh--hcccCCCCEEECcCCcCCCchhhccCCCCC
Confidence 4 58889999999999999988843 899999999999999998542 33334443
No 85
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=2.7e-17 Score=114.13 Aligned_cols=119 Identities=25% Similarity=0.368 Sum_probs=106.7
Q ss_pred CCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhc
Q 031005 7 RITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICN 86 (167)
Q Consensus 7 ~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~ 86 (167)
.++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+| .+..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 34456668999999999999999999988 889999999999999999999888888899999999999999887 6888
Q ss_pred CCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005 87 LIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 87 ~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+++|++|++++|.+..++. ..+..+++|+.+++++|++.+.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 8999999999999988765 5588999999999999998765
No 86
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=103.09 Aligned_cols=107 Identities=26% Similarity=0.361 Sum_probs=96.4
Q ss_pred CCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCc
Q 031005 21 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNN 99 (167)
Q Consensus 21 L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~ 99 (167)
-+.+++++++++.+|..+. ++++.|++++|.++.+|+.+..+++|+.|++++|.++.++ ..|..+++|++|++++|.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999987653 6899999999999999999999999999999999999885 578899999999999999
Q ss_pred CCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005 100 IGQIPANLLKDCKALQNISLHNNPISMDQF 129 (167)
Q Consensus 100 l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 129 (167)
+..++...+..+++|+.|++++|.++....
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 999998779999999999999999985443
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=2.8e-15 Score=120.58 Aligned_cols=124 Identities=24% Similarity=0.390 Sum_probs=76.9
Q ss_pred CcccCCCCCCCchhh-hCCCCCCEEEeeCCcCccccccc-cCC-------CCCcEEEeeCCCCCccchhhc--cCCCCCe
Q 031005 1 MTLDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETI-GSL-------RNLVLLNVSNNKLKSLPESIG--SCYSLEE 69 (167)
Q Consensus 1 L~l~~~~i~~l~~~~-~~l~~L~~L~l~~n~l~~l~~~~-~~l-------~~L~~l~l~~n~~~~~~~~~~--~l~~L~~ 69 (167)
|++++|.+..+|..+ ..+++|++|++++|.++.+|... ... ++|+.|++++|.++.+|..+. .+++|+.
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCE
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCE
Confidence 356677777666553 45677777777777776665432 222 267777777777766666655 6667777
Q ss_pred EEcCCCcCCccchhHhcCCCcCEEEcc------CCcC-CCCchHHhhCCCCCceEEcccCCCC
Q 031005 70 LQANDNLIGELPASICNLIHLKSLCLN------NNNI-GQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 70 l~l~~~~~~~l~~~~~~~~~l~~l~l~------~n~l-~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
|++++|.++.+|..+..+++|++|+++ +|.+ +.+|.. +..+++|+.|++++|.+.
T Consensus 518 L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp EECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCC
T ss_pred EECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCCcCC
Confidence 777777666666666666666666663 3443 344443 556666666666666664
No 88
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=2.4e-15 Score=123.16 Aligned_cols=123 Identities=29% Similarity=0.410 Sum_probs=71.0
Q ss_pred cccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~~ 78 (167)
++++|.+. .+|..+..+++|++|++++|.++. +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 34445444 445556666666666666666653 4555666666666666666665 34555556666666666666554
Q ss_pred -ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCC
Q 031005 79 -ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 79 -~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
.+|..+..+++|++|++++|.+. .+|.+ ++.+++|+.|++++|.+.
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFS 527 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCE
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCccc
Confidence 44555556666666666666663 33333 455566666666666555
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=4.7e-15 Score=110.30 Aligned_cols=120 Identities=20% Similarity=0.365 Sum_probs=96.2
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
+++++.++.+|..+ .++++.|++++|.++.++ ..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.++.
T Consensus 39 ~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 116 (332)
T 2ft3_A 39 QCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116 (332)
T ss_dssp ECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS
T ss_pred ECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc
Confidence 45667777777654 367888888888888864 5788888888888888888877 5678888888888888888887
Q ss_pred cchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 80 LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 80 l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+|..+. ++|++|++++|.+..++...+..+++|+.|++++|.++
T Consensus 117 l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 776554 68888888888888888777888888888888888875
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=3.4e-15 Score=120.48 Aligned_cols=125 Identities=26% Similarity=0.381 Sum_probs=84.0
Q ss_pred CcccCCCCCCCch-hhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRITSLPD-ELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+..+++ .|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|+ .|..+++|++|++++|.+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 3566677766544 467777777777777777765 4556777777777777777777655 466777777777777777
Q ss_pred Cccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 78 GELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 78 ~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
..++ ..++.+++|++|++++|.+...+...+..+++|+.|++++|.++
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 6664 45666777777777777765554444566666777777666665
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=7.5e-16 Score=113.83 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=64.5
Q ss_pred cccCCCCC-CCchhh--hCCCCCCEEEeeCCcCccccccccCC-----CCCcEEEeeCCCCCccc-hhhccCCCCCeEEc
Q 031005 2 TLDGNRIT-SLPDEL--GQLVRLERLSILGNMLTCLPETIGSL-----RNLVLLNVSNNKLKSLP-ESIGSCYSLEELQA 72 (167)
Q Consensus 2 ~l~~~~i~-~l~~~~--~~l~~L~~L~l~~n~l~~l~~~~~~l-----~~L~~l~l~~n~~~~~~-~~~~~l~~L~~l~l 72 (167)
++++|.+. .+|..+ ..+++|++|++++|+++.+|..+..+ ++|++|++++|.+..++ ..+..+++|++|++
T Consensus 101 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred EccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 34455554 344443 55555666666666555554444443 55556666665555553 34555555666666
Q ss_pred CCCcCCc---cchhH--hcCCCcCEEEccCCcCCCC---chHHhhCCCCCceEEcccCCCCh
Q 031005 73 NDNLIGE---LPASI--CNLIHLKSLCLNNNNIGQI---PANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 73 ~~~~~~~---l~~~~--~~~~~l~~l~l~~n~l~~~---~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
++|.+.. ++..+ ..+++|++|++++|.+..+ +...+..+++|+.|++++|.+..
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 5555431 12222 4455555555555555422 22334455555555555555554
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=4e-15 Score=118.14 Aligned_cols=123 Identities=34% Similarity=0.447 Sum_probs=95.4
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.++.+
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSC
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCch
Confidence 3566677776665 56778888888888777765 46788888888888888877 54 7899999999999888
Q ss_pred chhHhcCCCc-------CEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005 81 PASICNLIHL-------KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE 136 (167)
Q Consensus 81 ~~~~~~~~~l-------~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 136 (167)
|. +.. +| +.|++++|.++.+|..++ .+++|+.|++++|+++...+..+..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77 543 67 999999999999998854 599999999999999987665554443
No 93
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.60 E-value=9.9e-16 Score=123.15 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=102.0
Q ss_pred CCCCCCCchhhhCCCCCCEEEeeCCcCcc------------------cccccc--CCCCCcEEEeeCCCCC-ccchhhcc
Q 031005 5 GNRITSLPDELGQLVRLERLSILGNMLTC------------------LPETIG--SLRNLVLLNVSNNKLK-SLPESIGS 63 (167)
Q Consensus 5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~------------------l~~~~~--~l~~L~~l~l~~n~~~-~~~~~~~~ 63 (167)
+|+++.+|.++.++++|++|++++|.++. +|..+. .+++|++|++++|.+. .+|+.++.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 45566688889999999999999999988 888888 8999999999999876 56888888
Q ss_pred CCCCCeEEcCCCc-CC--ccchhHhcC------CCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCC
Q 031005 64 CYSLEELQANDNL-IG--ELPASICNL------IHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 64 l~~L~~l~l~~~~-~~--~l~~~~~~~------~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~ 125 (167)
+++|+.|++++|. ++ .+|..++.+ ++|++|++++|.+..+|. ..++.+++|+.|++++|.+.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence 9999999999997 76 478777765 889999999999988887 24788889999999998887
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=6.2e-15 Score=116.77 Aligned_cols=127 Identities=24% Similarity=0.295 Sum_probs=87.1
Q ss_pred cccCCCCCC-CchhhhCCCCCCEEEeeCCcCcccc---ccccCCCCCcEEEeeCCCCCc-cchh-hcc------------
Q 031005 2 TLDGNRITS-LPDELGQLVRLERLSILGNMLTCLP---ETIGSLRNLVLLNVSNNKLKS-LPES-IGS------------ 63 (167)
Q Consensus 2 ~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~l~~l~---~~~~~l~~L~~l~l~~n~~~~-~~~~-~~~------------ 63 (167)
++++|.+.. +|..+..+++|++|++++|+++.++ ..+..+++|+.|++++|.++. +|.. +..
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 455566653 4555566666666666666665432 345555666666666665554 4331 222
Q ss_pred ---------C-CCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 64 ---------C-YSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 64 ---------l-~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
+ ++|+.|++++|.++.+|..+..+++|++|++++|.+..+|...+..+++|+.+++++|++.++.
T Consensus 439 ~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 2 5777888888888778777778889999999999998888876788889999999999998753
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=3.2e-15 Score=120.66 Aligned_cols=127 Identities=25% Similarity=0.333 Sum_probs=111.6
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCCc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIGE 79 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~~ 79 (167)
+.++++++.+|..+. +++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.
T Consensus 10 ~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 10 DCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp ECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred ECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence 456778888887654 78999999999999986 4699999999999999999987 5678999999999999999998
Q ss_pred cch-hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhc
Q 031005 80 LPA-SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQ 130 (167)
Q Consensus 80 l~~-~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 130 (167)
+|. .+..+++|++|++++|.+..+++..++.+++|++|++++|.+......
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 876 689999999999999999999876789999999999999988754433
No 96
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=1.5e-14 Score=107.98 Aligned_cols=121 Identities=25% Similarity=0.404 Sum_probs=81.1
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 81 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~ 81 (167)
++++|.+..++. +..+++|+.+++++|.++.++. +..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+
T Consensus 183 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 183 SLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp ECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-
T ss_pred EccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-
Confidence 344455554433 4555555555555555555433 5666777777777777776655 66777777777777777766
Q ss_pred hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
..+..+++|+++++++|.+..++. +..+++|+.|++++|.+....
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCGGG
T ss_pred hhHhcCCCcCEEEccCCccCCChh--hcCCCCCCEEECcCCcCCCcC
Confidence 346677788888888888777743 677788888888888877544
No 97
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=118.51 Aligned_cols=127 Identities=20% Similarity=0.321 Sum_probs=105.8
Q ss_pred cccCCCCCCCc--hhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC--ccchhhccCCCCCeEEcCCCc
Q 031005 2 TLDGNRITSLP--DELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK--SLPESIGSCYSLEELQANDNL 76 (167)
Q Consensus 2 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~--~~~~~~~~l~~L~~l~l~~~~ 76 (167)
++++|.+..++ ..+..+++|++|++++|.+.. .|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 45666666443 356788888888888888876 4567888899999999999887 467788889999999999999
Q ss_pred CCcc-chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhh
Q 031005 77 IGEL-PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 77 ~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++.+ |..+..+++|++|++++|.+..+++..+..+++|+.+++++|++.+..
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9876 778888999999999999998888877899999999999999998763
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=1.2e-15 Score=126.22 Aligned_cols=113 Identities=21% Similarity=0.285 Sum_probs=83.6
Q ss_pred Cchhhh--CCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCC-CCc--cchhhccCC-------CCCeEEcCCCcC
Q 031005 11 LPDELG--QLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNK-LKS--LPESIGSCY-------SLEELQANDNLI 77 (167)
Q Consensus 11 l~~~~~--~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~-~~~--~~~~~~~l~-------~L~~l~l~~~~~ 77 (167)
+|..+. .+++|++|++++|.+.. +|..+..+++|+.|++++|. ++. +|+.++.++ +|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 777765 78888888888887654 67777888888888888886 664 566555544 778888888877
Q ss_pred Cccch--hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCC
Q 031005 78 GELPA--SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 78 ~~l~~--~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
..+|. .+..+++|+.|++++|.+..+| .++.+++|+.|++++|.+.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCS
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccc
Confidence 77776 7777777777777777777776 3677777777777777766
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=8.5e-15 Score=116.32 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=105.2
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++.+++|+.|++++|.++.+
T Consensus 446 L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 446 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp EECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred EEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC
Confidence 5788999999987 99999999999999999999999999999999999999999987 889999999999999999987
Q ss_pred --chhHhcCCCcCEEEccCCcCCCCch---HHhhCCCCCceEEc
Q 031005 81 --PASICNLIHLKSLCLNNNNIGQIPA---NLLKDCKALQNISL 119 (167)
Q Consensus 81 --~~~~~~~~~l~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l 119 (167)
|..+..+++|+.|++++|.+..+|+ .++..+++|+.|++
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8899999999999999999966654 34566889998864
No 100
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=5.4e-15 Score=121.13 Aligned_cols=128 Identities=30% Similarity=0.482 Sum_probs=114.7
Q ss_pred CcccCCCCC-CCchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCCCCC-ccchhhccCCCCCeEEcCCCcC
Q 031005 1 MTLDGNRIT-SLPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNNKLK-SLPESIGSCYSLEELQANDNLI 77 (167)
Q Consensus 1 L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~L~~l~l~~~~~ 77 (167)
|++++|.+. .+|..+..+++|++|++++|.++. +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 467888887 678899999999999999999995 7889999999999999999999 5688999999999999999999
Q ss_pred C-ccchhHhcCCCcCEEEccCCcCC-CCchHHhhCCCCCceEEcccCCCChhhh
Q 031005 78 G-ELPASICNLIHLKSLCLNNNNIG-QIPANLLKDCKALQNISLHNNPISMDQF 129 (167)
Q Consensus 78 ~-~l~~~~~~~~~l~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 129 (167)
. .+|..++.+++|++|++++|.+. .+|.. +..+++|+.+++++|++.+..+
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCC
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCC
Confidence 7 67999999999999999999995 66665 7899999999999998875433
No 101
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=5.5e-15 Score=100.60 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=96.8
Q ss_pred hhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchh-HhcCCCcCEE
Q 031005 15 LGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPAS-ICNLIHLKSL 93 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~-~~~~~~l~~l 93 (167)
+..+.+++.|++++|+++.++......++|+.|++++|.++.+ +.+..+++|+.|++++|.++.+|.. +..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 5678899999999999998865333345999999999999988 6788999999999999999988754 5889999999
Q ss_pred EccCCcCCCCch-HHhhCCCCCceEEcccCCCCh
Q 031005 94 CLNNNNIGQIPA-NLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 94 ~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 126 (167)
++++|.++.++. ..+..+++|+.+++++|++..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 999999998886 347899999999999999874
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=9.6e-15 Score=120.84 Aligned_cols=123 Identities=25% Similarity=0.382 Sum_probs=79.9
Q ss_pred cccCCCCCCCchhh-hCCCCCCEEEeeCCcCccccccccCC--------CCCcEEEeeCCCCCccchhhc--cCCCCCeE
Q 031005 2 TLDGNRITSLPDEL-GQLVRLERLSILGNMLTCLPETIGSL--------RNLVLLNVSNNKLKSLPESIG--SCYSLEEL 70 (167)
Q Consensus 2 ~l~~~~i~~l~~~~-~~l~~L~~L~l~~n~l~~l~~~~~~l--------~~L~~l~l~~n~~~~~~~~~~--~l~~L~~l 70 (167)
++++|.+..+|..+ ..+++|+.|++++|.++.+|..+... ++|+.|++++|.++.+|..+. .+++|+.|
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 56666666666654 36677777777777777666543222 267777777777776666665 67777777
Q ss_pred EcCCCcCCccchhHhcCCCcCEEEccC------CcC-CCCchHHhhCCCCCceEEcccCCCC
Q 031005 71 QANDNLIGELPASICNLIHLKSLCLNN------NNI-GQIPANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 71 ~l~~~~~~~l~~~~~~~~~l~~l~l~~------n~l-~~~~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
++++|.+..+|..+..+++|+.|++++ |.+ +.+|.. +..+++|+.|++++|.+.
T Consensus 759 ~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L~ 819 (876)
T 4ecn_A 759 DVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIR 819 (876)
T ss_dssp ECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCC
T ss_pred EeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCCC
Confidence 777777766666666777777777755 444 344443 566777777777777664
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=4.5e-15 Score=102.52 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=95.1
Q ss_pred CCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch--hhccCCCCCeEEcCCCcCCcc-chhHhcCCCcCEEEccC
Q 031005 21 LERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE--SIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNN 97 (167)
Q Consensus 21 L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l~l~~ 97 (167)
-+++++++++++.+|..+.. +++.|++++|.++.+++ .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 37899999999999876643 89999999999998865 388999999999999999877 67899999999999999
Q ss_pred CcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005 98 NNIGQIPANLLKDCKALQNISLHNNPISMDQF 129 (167)
Q Consensus 98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 129 (167)
|.+..++...+..+++|+.|++++|.++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 99998888778999999999999999985433
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=1.1e-15 Score=112.85 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=82.8
Q ss_pred CcccCCCCCC-Cc----hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCc---cch--hhccCCCCCe
Q 031005 1 MTLDGNRITS-LP----DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS---LPE--SIGSCYSLEE 69 (167)
Q Consensus 1 L~l~~~~i~~-l~----~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~---~~~--~~~~l~~L~~ 69 (167)
|++++|.+.. .+ ..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+.. ++. .+..+++|++
T Consensus 122 L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 122 LRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp CEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred EEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 4667777763 22 23456778888888888887754 567778888888888887653 322 2256777778
Q ss_pred EEcCCCcCCccch----hHhcCCCcCEEEccCCcCCCC-chHHhhCC---CCCceEEcccCCCCh
Q 031005 70 LQANDNLIGELPA----SICNLIHLKSLCLNNNNIGQI-PANLLKDC---KALQNISLHNNPISM 126 (167)
Q Consensus 70 l~l~~~~~~~l~~----~~~~~~~l~~l~l~~n~l~~~-~~~~~~~~---~~L~~l~l~~n~~~~ 126 (167)
|++++|.++.++. .+..+++|++|++++|.+... |.. +..+ ++|+.|++++|.++.
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLEQ 265 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCCS
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCCc
Confidence 8887777765543 245667777777777777555 433 3343 577777777777763
No 105
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=1e-14 Score=107.79 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=99.0
Q ss_pred CcccCCCCCCCchhhhCC-----CCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCc---cchhh--ccCCCCCe
Q 031005 1 MTLDGNRITSLPDELGQL-----VRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS---LPESI--GSCYSLEE 69 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l-----~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~---~~~~~--~~l~~L~~ 69 (167)
|++++|++..+|..+..+ ++|++|++++|+++.++ ..+..+++|+.|++++|.+.. +++.+ ..+++|++
T Consensus 126 L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 205 (312)
T 1wwl_A 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205 (312)
T ss_dssp EEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE
T ss_pred EEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE
Confidence 467888888777777666 89999999999999876 788899999999999998763 34444 78889999
Q ss_pred EEcCCCcCCccc---h-hHhcCCCcCEEEccCCcCCCCc-hHHhhCCCCCceEEcccCCCCh
Q 031005 70 LQANDNLIGELP---A-SICNLIHLKSLCLNNNNIGQIP-ANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 70 l~l~~~~~~~l~---~-~~~~~~~l~~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
|++++|.++.++ . .+..+++|++|++++|.+...+ ...+..+++|+.|++++|.++.
T Consensus 206 L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp EECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred EECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 999999888543 2 3356789999999999986644 2335667889999999998873
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=120.60 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=105.2
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCc-Cccc-cccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNM-LTCL-PETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL 76 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~-l~~l-~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~ 76 (167)
|++++|.|+.+ +..|..+++|++|++++|. +..+ |..|..+++|++|++++|.+..+ |..|..+++|++|++++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 57888888865 6678899999999999995 4456 57889999999999999999977 6788999999999999998
Q ss_pred CCc-cchh--HhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005 77 IGE-LPAS--ICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 77 ~~~-l~~~--~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+.. ++.. +..+++|++|++++|.+..++. ..++.+++|+.|++++|.+...
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 874 4443 7889999999999999966533 4588999999999999988754
No 107
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=2.1e-14 Score=97.74 Aligned_cols=103 Identities=28% Similarity=0.367 Sum_probs=90.9
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccchh-hccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPES-IGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~l~~L~~l~l~~~~~~ 78 (167)
++++++++..+|..+. +.|+.|++++|+++.+ |..|..+++|+.|++++|.++.+|+. |..+++|+.|++++|.++
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 4678889999988664 8899999999999997 56889999999999999999999774 688999999999999999
Q ss_pred ccchh-HhcCCCcCEEEccCCcCCCCch
Q 031005 79 ELPAS-ICNLIHLKSLCLNNNNIGQIPA 105 (167)
Q Consensus 79 ~l~~~-~~~~~~l~~l~l~~n~l~~~~~ 105 (167)
.+|.. +..+++|++|++++|++...+.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred eeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88764 8889999999999999965554
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.56 E-value=1.6e-14 Score=112.08 Aligned_cols=112 Identities=23% Similarity=0.308 Sum_probs=74.9
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|+++++.++.+| ++..+++|++|++++|.++.+| +..+++|+.|++++|.++.++ +..+++|++|++++|.++.+
T Consensus 47 L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 47 LDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp EECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred EEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee
Confidence 356677777665 5677777777777777777764 666777777777777777663 66677777777777777666
Q ss_pred chhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005 81 PASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
+ ++.+++|++|++++|.+..++ ++.+++|+.+++++|
T Consensus 122 ~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 122 D--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp C--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTC
T ss_pred c--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCC
Confidence 4 566667777777777665553 344455555555554
No 109
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=9.9e-15 Score=116.28 Aligned_cols=124 Identities=25% Similarity=0.289 Sum_probs=71.8
Q ss_pred cccCCCCCCCch-hhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCcCC-
Q 031005 2 TLDGNRITSLPD-ELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNLIG- 78 (167)
Q Consensus 2 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~~~- 78 (167)
++++|.+..++. .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 455666665543 36667777777777777777776667777777777777776655 335566666666666666553
Q ss_pred ccc-hhHhcCCCcCEEEccCCcCCCCc--hHHhhCCCCCceEEcccCCCC
Q 031005 79 ELP-ASICNLIHLKSLCLNNNNIGQIP--ANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 79 ~l~-~~~~~~~~l~~l~l~~n~l~~~~--~~~~~~~~~L~~l~l~~n~~~ 125 (167)
.++ ..+..+++|+++++++|.+..+. ...+..+++|+.+++++|.+.
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 332 23445555555555555554332 222444555555555555443
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=110.66 Aligned_cols=133 Identities=15% Similarity=0.163 Sum_probs=105.3
Q ss_pred CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCcc---cc--ccccCCCCCcEEEeeCCCCCccchh----hccCCCCCeE
Q 031005 1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTC---LP--ETIGSLRNLVLLNVSNNKLKSLPES----IGSCYSLEEL 70 (167)
Q Consensus 1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~---l~--~~~~~l~~L~~l~l~~n~~~~~~~~----~~~l~~L~~l 70 (167)
|++++|.+..++ ..+..+++|++|++++|++.. ++ ..+..+++|++|++++|.++.++.. +..+++|++|
T Consensus 150 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 150 LSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp EEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSE
T ss_pred EEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEE
Confidence 478889998664 568899999999999999764 43 2347889999999999999876542 4678999999
Q ss_pred EcCCCcCCcc-chhHhcC---CCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh-hhccccchH
Q 031005 71 QANDNLIGEL-PASICNL---IHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD-QFQQMEGFE 136 (167)
Q Consensus 71 ~l~~~~~~~l-~~~~~~~---~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~l~ 136 (167)
++++|.++.. |..+..+ ++|++|++++|.+..+|..+ .++|+.|++++|.++.. .+..++.++
T Consensus 230 ~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 230 DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred ECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCchhhhCCCcc
Confidence 9999999876 6666665 69999999999999888754 37899999999999863 334444444
No 111
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=1.7e-14 Score=97.73 Aligned_cols=102 Identities=27% Similarity=0.390 Sum_probs=89.8
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
+++++++++.+|..+ .+.+++|++++|.++.+ |..|..+++|+.|++++|.++.+|+ .|..+++|+.|++++|.++
T Consensus 14 l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 14 VDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp EECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 467889999998765 38899999999999997 5679999999999999999999976 5689999999999999999
Q ss_pred ccch-hHhcCCCcCEEEccCCcCCCCc
Q 031005 79 ELPA-SICNLIHLKSLCLNNNNIGQIP 104 (167)
Q Consensus 79 ~l~~-~~~~~~~l~~l~l~~n~l~~~~ 104 (167)
.++. .+..+++|++|++++|++.-.+
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8865 5888999999999999985443
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=6e-14 Score=108.82 Aligned_cols=118 Identities=25% Similarity=0.386 Sum_probs=61.9
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccch
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPA 82 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~ 82 (167)
+++|.+..+++ +..+++|++|++++|.++.++. +..+++|+.|++++|.+..+++ +..+++|+.|++++|.+..++.
T Consensus 250 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 250 LANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh
Confidence 34444443332 4444555555555555554433 4445555555555555554433 4455555555555555554432
Q ss_pred hHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 83 SICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 83 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+..+++|+.+++++|.+..++. +..+++|+.+++++|.+..
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred -hccCccCCEeECCCCccCCchh--hccCCCCCEEeCCCCccCc
Confidence 4455566666666666655532 5556666666666666553
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.4e-16 Score=110.59 Aligned_cols=123 Identities=23% Similarity=0.282 Sum_probs=106.1
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.+
T Consensus 53 L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 53 LALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp EECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCH
T ss_pred EECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCch
Confidence 467888888888 889999999999999999999888888899999999999999986 688899999999999999987
Q ss_pred ch--hHhcCCCcCEEEccCCcCCCCc----------hHHhhCCCCCceEEcccCCCChh
Q 031005 81 PA--SICNLIHLKSLCLNNNNIGQIP----------ANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 81 ~~--~~~~~~~l~~l~l~~n~l~~~~----------~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+. .+..+++|+++++++|.+...+ ..++..+++|+.++ +++++..
T Consensus 131 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred hHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 54 7889999999999999984332 23578899999987 7777654
No 114
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=1.3e-14 Score=113.40 Aligned_cols=126 Identities=22% Similarity=0.264 Sum_probs=85.6
Q ss_pred CcccCCCCCCC-chhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchh-----------------hc
Q 031005 1 MTLDGNRITSL-PDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-----------------IG 62 (167)
Q Consensus 1 L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~-----------------~~ 62 (167)
|++++|.+..+ |..+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.+|+. ..
T Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~ 117 (487)
T 3oja_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117 (487)
T ss_dssp EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC
T ss_pred EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc
Confidence 46788888866 4578888889999998888887554 77778888888887777655321 11
Q ss_pred cCCCCCeEEcCCCcCCcc-chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCChh
Q 031005 63 SCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 63 ~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.+++|+.|++++|.++.+ |..++.+++|++|++++|.+..+++ .+...++.|+.|++++|.++..
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 234566666666666554 4456667777777777777755433 3333677777777777777643
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=1.6e-14 Score=106.86 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=83.1
Q ss_pred CcccCCCCCCCc-hhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchh-----------------hc
Q 031005 1 MTLDGNRITSLP-DELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPES-----------------IG 62 (167)
Q Consensus 1 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~-----------------~~ 62 (167)
|++++|.+..++ ..+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++.. ..
T Consensus 39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~ 117 (317)
T 3o53_A 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117 (317)
T ss_dssp EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEEC
T ss_pred EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCcc
Confidence 467888888764 578888999999999998887654 77788888888888877655321 01
Q ss_pred cCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHh-hCCCCCceEEcccCCCCh
Q 031005 63 SCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLL-KDCKALQNISLHNNPISM 126 (167)
Q Consensus 63 ~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n~~~~ 126 (167)
.+++|+.|++++|.++.++ ..+..+++|++|++++|.+..++...+ ..+++|+.|++++|.++.
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 2344555566666555542 355556677777777777755543323 456677777777777664
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=6.2e-14 Score=108.75 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=87.9
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 81 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~ 81 (167)
++.++.+..+|. +..+++|++|++++|.++.+++ +..+++|+.|++++|.+..+++ +..+++|++|++++|.++.++
T Consensus 52 ~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 52 QADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp ECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred ecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence 456666776653 6778888888888888887766 7778888888888888877765 777888888888888877775
Q ss_pred hhHhcCCCcCEEEccCCcCCCCch-------------------HHhhCCCCCceEEcccCCCCh
Q 031005 82 ASICNLIHLKSLCLNNNNIGQIPA-------------------NLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~~-------------------~~~~~~~~L~~l~l~~n~~~~ 126 (167)
. +..+++|++|++++|.+..++. ..+..+++|+.|++++|.+..
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC
Confidence 4 6777788888888777765543 014556667777777776653
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.51 E-value=1.6e-13 Score=110.09 Aligned_cols=111 Identities=30% Similarity=0.371 Sum_probs=80.7
Q ss_pred CCCCEEEeeCCcCccccccccC-----------------CCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005 19 VRLERLSILGNMLTCLPETIGS-----------------LRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 81 (167)
Q Consensus 19 ~~L~~L~l~~n~l~~l~~~~~~-----------------l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~ 81 (167)
++|+.|++++|.++.+|..+.. +++|+.|++++|.++.+| ..+++|+.|++++|.++.+|
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp 257 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLP 257 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCC
Confidence 5556666666665554432111 256777777777777665 34577888888888888777
Q ss_pred hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchH
Q 031005 82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFE 136 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~ 136 (167)
. .+++|+.|++++|.+..+|.. +..+++|+.|++++|+++...+..+..+.
T Consensus 258 ~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp C---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred c---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6 567899999999999999876 78999999999999999977655544443
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=1e-13 Score=107.48 Aligned_cols=116 Identities=28% Similarity=0.319 Sum_probs=77.2
Q ss_pred CcccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 1 MTLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 1 L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
|++++|.++.+| +..+++|++|++++|.++.++ +..+++|+.|++++|.++.++ +..+++|++|++++|.++.+
T Consensus 69 L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 69 LICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC
T ss_pred EEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee
Confidence 467777777765 677888888888888887764 677788888888888777764 66777788888877777655
Q ss_pred chhHhcCC----------------------CcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 81 PASICNLI----------------------HLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 81 ~~~~~~~~----------------------~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+ +..++ +|++|++++|.+..++ ++.+++|+.+++++|.++..
T Consensus 143 ~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 143 D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC
T ss_pred c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee
Confidence 3 33444 4555555555554443 34555555555555555543
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=1.9e-13 Score=92.97 Aligned_cols=106 Identities=25% Similarity=0.365 Sum_probs=93.1
Q ss_pred CCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccch-hHhcCCCcCEEEccC
Q 031005 20 RLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIHLKSLCLNN 97 (167)
Q Consensus 20 ~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~l~~l~l~~ 97 (167)
..+.+++++++++.+|..+. ++++.|++++|.++.+++ .+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35789999999999886543 689999999999998865 56889999999999999998864 568899999999999
Q ss_pred CcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 98 NNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
|.++.++...+..+++|+.|++++|.++..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSV 115 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEe
Confidence 999999888789999999999999998744
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2.5e-13 Score=107.87 Aligned_cols=69 Identities=38% Similarity=0.479 Sum_probs=28.6
Q ss_pred ccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCcc
Q 031005 3 LDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGEL 80 (167)
Q Consensus 3 l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l 80 (167)
+++|.|+.+| ..+++|++|++++|+++.+|. +.. +|+.|++++|.++.+|+ .+++|+.|++++|.++.+
T Consensus 87 Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l 155 (571)
T 3cvr_A 87 ITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTML 155 (571)
T ss_dssp CCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred CcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcC
Confidence 3444444444 223444444444444444443 222 44444444444444333 233344444444444333
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=2.4e-13 Score=105.35 Aligned_cols=115 Identities=27% Similarity=0.411 Sum_probs=71.2
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 81 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~ 81 (167)
++++|+++.+| ++..+++|++|++++|+++.+|..+ .+|+.|++++|.++.+| .+..+++|+.+++++|.++.+|
T Consensus 137 ~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 137 GVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp ECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred ECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence 45566666665 4666666777777776666655432 35666666666666655 4666666666666666665554
Q ss_pred hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCCh
Q 031005 82 ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
... .+++++++++|.+..+|. +..+++|+.+++++|.++.
T Consensus 212 ~~~---~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 212 DLP---LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred CCc---CcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCc
Confidence 321 356666666666666653 5666667777777666653
No 122
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=2.6e-13 Score=101.34 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=82.3
Q ss_pred CEEEeeCC-cCccccccccCCCCCcEEEeeC-CCCCccc-hhhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccC
Q 031005 22 ERLSILGN-MLTCLPETIGSLRNLVLLNVSN-NKLKSLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNN 97 (167)
Q Consensus 22 ~~L~l~~n-~l~~l~~~~~~l~~L~~l~l~~-n~~~~~~-~~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~ 97 (167)
..++++++ +++.+|. +..+.+|+.|++++ |.++.++ ..|..+++|+.|+|++|.++.++ ..|..+++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35677777 7888888 88888888888885 8888775 46788888888888888887664 4677888888888888
Q ss_pred CcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 98 NNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 98 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
|.+..+|..++..++ |+.|++.+|++.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 888888877666665 88888888888865
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=9.6e-14 Score=105.19 Aligned_cols=128 Identities=22% Similarity=0.292 Sum_probs=100.1
Q ss_pred CcccCCCCC--CCc---hhhhCCCCCCEEEeeCCcCc--c---c-cccccCCCCCcEEEeeCCCCC-----ccchhhccC
Q 031005 1 MTLDGNRIT--SLP---DELGQLVRLERLSILGNMLT--C---L-PETIGSLRNLVLLNVSNNKLK-----SLPESIGSC 64 (167)
Q Consensus 1 L~l~~~~i~--~l~---~~~~~l~~L~~L~l~~n~l~--~---l-~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l 64 (167)
|++++|++. .++ ..+..+++|++|++++|+++ . + +..+..+++|+.|++++|.++ .+|..+..+
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 467777776 334 45678889999999999887 2 2 337788899999999999884 567778888
Q ss_pred CCCCeEEcCCCcCCc-----cchhHhc--CCCcCEEEccCCcCCC-----CchHHhhCCCCCceEEcccCCCChhh
Q 031005 65 YSLEELQANDNLIGE-----LPASICN--LIHLKSLCLNNNNIGQ-----IPANLLKDCKALQNISLHNNPISMDQ 128 (167)
Q Consensus 65 ~~L~~l~l~~~~~~~-----l~~~~~~--~~~l~~l~l~~n~l~~-----~~~~~~~~~~~L~~l~l~~n~~~~~~ 128 (167)
++|+.|++++|.++. ++..+.. +++|++|++++|.++. ++..+...+++|+.|++++|+++...
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999999999998874 3555543 7899999999999966 77765577899999999999998654
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=9e-14 Score=103.22 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=48.9
Q ss_pred chhhhCCCCCCEEEeeCC-cCcc--ccccccCCCCCcEEEeeCC-CCCc--cchhhccCC-CCCeEEcCCCc--C--Ccc
Q 031005 12 PDELGQLVRLERLSILGN-MLTC--LPETIGSLRNLVLLNVSNN-KLKS--LPESIGSCY-SLEELQANDNL--I--GEL 80 (167)
Q Consensus 12 ~~~~~~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~l~l~~n-~~~~--~~~~~~~l~-~L~~l~l~~~~--~--~~l 80 (167)
+..+..+++|++|++++| .++. ++..+..+++|+.|++++| .++. ++..+..++ +|++|++++|. + ..+
T Consensus 135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 333444444444444444 3432 3333444444555555444 4442 233344444 55555555542 2 123
Q ss_pred chhHhcCCCcCEEEccCCc-CCCCchHHhhCCCCCceEEcccC
Q 031005 81 PASICNLIHLKSLCLNNNN-IGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 81 ~~~~~~~~~l~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
+..+..+++|++|++++|. ++......+..+++|+.|++++|
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 3344445555555555554 32211112444555555555555
No 125
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=111.81 Aligned_cols=134 Identities=22% Similarity=0.268 Sum_probs=110.5
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCC-CCcc-chhhccCCCCCeEEcCCCcCC
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK-LKSL-PESIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~-~~~~-~~~~~~l~~L~~l~l~~~~~~ 78 (167)
+.++++++.+|. -.++++.|++++|.++.+ +..|..+++|++|++++|. +..+ |..|..+++|++|++++|.+.
T Consensus 10 dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 10 FYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 446678888886 557899999999999986 6789999999999999994 4466 668999999999999999998
Q ss_pred cc-chhHhcCCCcCEEEccCCcCCC-Cch-HHhhCCCCCceEEcccCCCChh----hhccccchHHH
Q 031005 79 EL-PASICNLIHLKSLCLNNNNIGQ-IPA-NLLKDCKALQNISLHNNPISMD----QFQQMEGFEEF 138 (167)
Q Consensus 79 ~l-~~~~~~~~~l~~l~l~~n~l~~-~~~-~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~l~~l 138 (167)
.+ |..+..+++|++|++++|.+.. ++. ..++.+++|+.|++++|.+... .+..+.+++.|
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 76 7889999999999999999965 333 3478999999999999998743 34445555443
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=9.1e-14 Score=103.18 Aligned_cols=125 Identities=26% Similarity=0.384 Sum_probs=81.8
Q ss_pred cccCCCCC-C-CchhhhCCCCCCEEEeeCCcCcc-ccccccCCCCCcEEEeeCC-CCCc--cchhhccCCCCCeEEcCCC
Q 031005 2 TLDGNRIT-S-LPDELGQLVRLERLSILGNMLTC-LPETIGSLRNLVLLNVSNN-KLKS--LPESIGSCYSLEELQANDN 75 (167)
Q Consensus 2 ~l~~~~i~-~-l~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~l~l~~n-~~~~--~~~~~~~l~~L~~l~l~~~ 75 (167)
++++|.+. . ++..+..+++|++|++++|.++. .+..+..+++|+.|++++| .++. ++..+..+++|++|++++|
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 45555554 2 45556677777777777777663 4556666777777777777 5662 4555666777777777777
Q ss_pred -cCCc--cchhHhcCC-CcCEEEccCCc--C--CCCchHHhhCCCCCceEEcccCC-CChh
Q 031005 76 -LIGE--LPASICNLI-HLKSLCLNNNN--I--GQIPANLLKDCKALQNISLHNNP-ISMD 127 (167)
Q Consensus 76 -~~~~--l~~~~~~~~-~l~~l~l~~n~--l--~~~~~~~~~~~~~L~~l~l~~n~-~~~~ 127 (167)
.++. ++..+..++ +|++|++++|. + ..++. .+..+++|+.|++++|. ++..
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGG
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHH
Confidence 6653 455666777 77777777773 3 22333 35677788888888877 5543
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=1.1e-12 Score=97.92 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=87.2
Q ss_pred cccCC-CCCCCchhhhCCCCCCEEEeeC-CcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcC
Q 031005 2 TLDGN-RITSLPDELGQLVRLERLSILG-NMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLI 77 (167)
Q Consensus 2 ~l~~~-~i~~l~~~~~~l~~L~~L~l~~-n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~ 77 (167)
+.+++ ++..+|. +..+.+|+.|++++ |.++.++ ..|..+++|+.|++++|.++.+++ .|..+++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44566 7889999 99999999999996 9999987 679999999999999999998855 789999999999999999
Q ss_pred CccchhHhcCCCcCEEEccCCcCCCC
Q 031005 78 GELPASICNLIHLKSLCLNNNNIGQI 103 (167)
Q Consensus 78 ~~l~~~~~~~~~l~~l~l~~n~l~~~ 103 (167)
+.+|........|+.|++.+|.+.-.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCccCC
Confidence 99876554444499999999999543
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=1.9e-12 Score=103.83 Aligned_cols=92 Identities=35% Similarity=0.394 Sum_probs=54.0
Q ss_pred cccCCCCCCCchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccc
Q 031005 2 TLDGNRITSLPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELP 81 (167)
Q Consensus 2 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~ 81 (167)
+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|
T Consensus 46 ~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 46 NVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp ECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCC
T ss_pred EecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCC
Confidence 566666766665543 567777777777666655 34666666676666666654 4556666666666655554
Q ss_pred hhHhcCCCcCEEEccCCcCCCCc
Q 031005 82 ASICNLIHLKSLCLNNNNIGQIP 104 (167)
Q Consensus 82 ~~~~~~~~l~~l~l~~n~l~~~~ 104 (167)
. .+.+|+.|++++|.+..+|
T Consensus 118 ~---~l~~L~~L~L~~N~l~~lp 137 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLTSLP 137 (622)
T ss_dssp C---CCTTCCEEECCSSCCSCCC
T ss_pred C---CCCCcCEEECCCCCCCcCC
Confidence 4 2334444444444444443
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=2.8e-13 Score=101.53 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=86.3
Q ss_pred cccCCCCC-CCch-hhhCCCCCCE-EEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCc---------------------
Q 031005 2 TLDGNRIT-SLPD-ELGQLVRLER-LSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKS--------------------- 56 (167)
Q Consensus 2 ~l~~~~i~-~l~~-~~~~l~~L~~-L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~--------------------- 56 (167)
++++|.+. .+|. .|..++++.+ +.+.+|+++.++ ..|..+++|+.+++++|.+..
T Consensus 60 ~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp EEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred ECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc
Confidence 45555553 2332 3445555443 333445555543 345555555555555555443
Q ss_pred ----cch-hhccC-CCCCeEEcCCCcCCccchhHhcCCCcCEEEcc-CCcCCCCchHHhhCCCCCceEEcccCCCChhhh
Q 031005 57 ----LPE-SIGSC-YSLEELQANDNLIGELPASICNLIHLKSLCLN-NNNIGQIPANLLKDCKALQNISLHNNPISMDQF 129 (167)
Q Consensus 57 ----~~~-~~~~l-~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~-~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 129 (167)
+++ .|..+ ..++.|++++|.++.++.......++..+++. +|.++.+|..+|+.+++|+.|++++|.++....
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 322 22233 24777888888888887766666788889886 467899998888999999999999999886544
Q ss_pred ccccchHHHH
Q 031005 130 QQMEGFEEFE 139 (167)
Q Consensus 130 ~~~~~l~~l~ 139 (167)
..+.++..|.
T Consensus 220 ~~~~~L~~L~ 229 (350)
T 4ay9_X 220 YGLENLKKLR 229 (350)
T ss_dssp SSCTTCCEEE
T ss_pred hhhccchHhh
Confidence 4455544433
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.37 E-value=2.6e-12 Score=99.53 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=38.1
Q ss_pred CCCcEEEeeCCCCCccchhhccCCCCCeEEcCCCcCCccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEccc
Q 031005 42 RNLVLLNVSNNKLKSLPESIGSCYSLEELQANDNLIGELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHN 121 (167)
Q Consensus 42 ~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 121 (167)
++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+ .+++++++++|.+..+|. ++.+++|+.+++++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCC
Confidence 34555555555555544 3555555555555555554444321 245555555555544442 44455555555554
Q ss_pred CCCC
Q 031005 122 NPIS 125 (167)
Q Consensus 122 n~~~ 125 (167)
|.+.
T Consensus 205 N~l~ 208 (454)
T 1jl5_A 205 NSLK 208 (454)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 4443
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=4.6e-13 Score=101.44 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=6.9
Q ss_pred hCCCCCceEEcccCCCC
Q 031005 109 KDCKALQNISLHNNPIS 125 (167)
Q Consensus 109 ~~~~~L~~l~l~~n~~~ 125 (167)
..+++|+.|++++|.+.
T Consensus 241 ~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLS 257 (386)
T ss_dssp GGCTTCCEEECTTCCCC
T ss_pred ccCCCcCEEECCCCCCc
Confidence 33334444444444433
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=2.6e-12 Score=96.60 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=26.8
Q ss_pred CCEEEeeCCcCcccc-----ccccCCC-CCcEEEeeCCCCCcc-chhhccC-----CCCCeEEcCCCcCC
Q 031005 21 LERLSILGNMLTCLP-----ETIGSLR-NLVLLNVSNNKLKSL-PESIGSC-----YSLEELQANDNLIG 78 (167)
Q Consensus 21 L~~L~l~~n~l~~l~-----~~~~~l~-~L~~l~l~~n~~~~~-~~~~~~l-----~~L~~l~l~~~~~~ 78 (167)
|++|++++|.++..+ ..+..++ +|+.|++++|.++.. +..+..+ ++|++|++++|.++
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 555555555554432 2344444 455555555555433 2222222 44555555555544
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.31 E-value=5e-12 Score=94.71 Aligned_cols=98 Identities=19% Similarity=0.316 Sum_probs=46.9
Q ss_pred CCCCCCCchhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCc-cch-hhccCCCCCe-EEcCCCcCCcc
Q 031005 5 GNRITSLPDELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKS-LPE-SIGSCYSLEE-LQANDNLIGEL 80 (167)
Q Consensus 5 ~~~i~~l~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~-~~~-~~~~l~~L~~-l~l~~~~~~~l 80 (167)
+++++++|..+ .+++++|++++|+|+.+|. .|..+++|++|++++|.+.. +|+ .|..++++.+ +.+..|.+..+
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 34455555433 2345555555555555542 45555555555555555432 332 3444444433 33334445444
Q ss_pred -chhHhcCCCcCEEEccCCcCCCCc
Q 031005 81 -PASICNLIHLKSLCLNNNNIGQIP 104 (167)
Q Consensus 81 -~~~~~~~~~l~~l~l~~n~l~~~~ 104 (167)
|..+..+++|+++++++|.+..++
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLP 120 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred CchhhhhccccccccccccccccCC
Confidence 234444555555555555544333
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=2.8e-12 Score=96.45 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=5.9
Q ss_pred CCceEEcccCCCC
Q 031005 113 ALQNISLHNNPIS 125 (167)
Q Consensus 113 ~L~~l~l~~n~~~ 125 (167)
+|+.|++++|.+.
T Consensus 226 ~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 226 HVVSLNLCLNCLH 238 (362)
T ss_dssp TCCEEECCSSCCC
T ss_pred CceEEECcCCCCC
Confidence 4444444444444
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=3.1e-12 Score=98.62 Aligned_cols=125 Identities=24% Similarity=0.232 Sum_probs=75.7
Q ss_pred cccCCCCCC-----CchhhhCCCCCCEEEeeCCcCccc-----cccc-cCCCCCcEEEeeCCCCCc-----cchhhccCC
Q 031005 2 TLDGNRITS-----LPDELGQLVRLERLSILGNMLTCL-----PETI-GSLRNLVLLNVSNNKLKS-----LPESIGSCY 65 (167)
Q Consensus 2 ~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~l~~l-----~~~~-~~l~~L~~l~l~~n~~~~-----~~~~~~~l~ 65 (167)
++++|.++. ++..+..+++|++|++++|.++.. ...+ ...++|+.|++++|.++. ++..+..++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 455555553 455555566666666666666531 1111 122466777777776663 344556667
Q ss_pred CCCeEEcCCCcCCcc-chhHh----c-CCCcCEEEccCCcCC-----CCchHHhhCCCCCceEEcccCCCChh
Q 031005 66 SLEELQANDNLIGEL-PASIC----N-LIHLKSLCLNNNNIG-----QIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 66 ~L~~l~l~~~~~~~l-~~~~~----~-~~~l~~l~l~~n~l~-----~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+|++|++++|.++.. +..+. . .++|++|++++|.++ .++.. +..+++|+.+++++|++...
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSSSCCHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCCCCCHH
Confidence 778888877777533 22222 1 567888888888776 34443 56678888888888888754
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.18 E-value=1.2e-11 Score=95.38 Aligned_cols=77 Identities=22% Similarity=0.188 Sum_probs=41.8
Q ss_pred cccCCCCCC-----CchhhhCCCCCCEEEeeCCcCccc-----cc-cccCCCCCcEEEeeCCCCCc-----cchhhccCC
Q 031005 2 TLDGNRITS-----LPDELGQLVRLERLSILGNMLTCL-----PE-TIGSLRNLVLLNVSNNKLKS-----LPESIGSCY 65 (167)
Q Consensus 2 ~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~l~~l-----~~-~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l~ 65 (167)
++++|.++. ++..+..+++|++|++++|.++.. .. .+..+++|+.|++++|.++. ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 455555553 344455566666666666665531 11 12245566666666666653 444455556
Q ss_pred CCCeEEcCCCcCC
Q 031005 66 SLEELQANDNLIG 78 (167)
Q Consensus 66 ~L~~l~l~~~~~~ 78 (167)
+|++|++++|.++
T Consensus 285 ~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 285 SLKELSLAGNELG 297 (461)
T ss_dssp TCCEEECTTCCCH
T ss_pred CcceEECCCCCCc
Confidence 6666666666553
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=5.3e-11 Score=88.35 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcC-EEEccCCcCCCCchHHhhCCCCCceE
Q 031005 41 LRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLK-SLCLNNNNIGQIPANLLKDCKALQNI 117 (167)
Q Consensus 41 l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~-~l~l~~n~l~~~~~~~~~~~~~L~~l 117 (167)
+++|+.+++.+|.++.+|+ .|..+.+|+.+++..| ++.++ ..|..+.+|+ .+++.+ .+..++..+|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 4566666666666666654 5666667777777665 55553 3566666676 677666 6666666666777777777
Q ss_pred EcccCCCChhhhccc
Q 031005 118 SLHNNPISMDQFQQM 132 (167)
Q Consensus 118 ~l~~n~~~~~~~~~~ 132 (167)
++..|.++......+
T Consensus 303 ~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 303 LATGDKITTLGDELF 317 (329)
T ss_dssp EECSSCCCEECTTTT
T ss_pred EeCCCccCccchhhh
Confidence 766666654433333
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.10 E-value=1.7e-11 Score=92.78 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=81.0
Q ss_pred cccCCCCCCC-chh-hhCCCCCCEEEeeCCcCccc-----cccc-cCCCCCcEEEeeCCCCCc-----cchhhccCCCCC
Q 031005 2 TLDGNRITSL-PDE-LGQLVRLERLSILGNMLTCL-----PETI-GSLRNLVLLNVSNNKLKS-----LPESIGSCYSLE 68 (167)
Q Consensus 2 ~l~~~~i~~l-~~~-~~~l~~L~~L~l~~n~l~~l-----~~~~-~~l~~L~~l~l~~n~~~~-----~~~~~~~l~~L~ 68 (167)
++++|.++.. ... ...+.+|+.|++++|.++.. ...+ ...++|+.|++++|.++. ++..+..+++|+
T Consensus 107 ~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~ 186 (372)
T 3un9_A 107 NLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186 (372)
T ss_dssp ECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCC
T ss_pred EecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcC
Confidence 5556665421 111 22345667777777776632 1122 235678888888887763 344556677888
Q ss_pred eEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCCch----HHhhCCCCCceEEcccCCCChhhhc
Q 031005 69 ELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPA----NLLKDCKALQNISLHNNPISMDQFQ 130 (167)
Q Consensus 69 ~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~~~~~~ 130 (167)
+|++++|.++. ++..+...++|++|++++|.++.... .++...+.|+.|++++|++......
T Consensus 187 ~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp EEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred EEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 88888887763 24455667788888888888854322 2244567888888888888755433
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=6.7e-10 Score=82.41 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=90.3
Q ss_pred CCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCC-eEEcCCCcCCccc-hhHhcCCCcCEE
Q 031005 18 LVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLE-ELQANDNLIGELP-ASICNLIHLKSL 93 (167)
Q Consensus 18 l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~-~l~l~~~~~~~l~-~~~~~~~~l~~l 93 (167)
+++|+.+++++|+++.++ ..|..+.+|+.+++.+| +..+++ +|..+.+|+ .+++.. .++.++ ..|..+.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999999997 57999999999999997 888855 789999999 999988 777774 688899999999
Q ss_pred EccCCcCCCCchHHhhCCCCCceEEc
Q 031005 94 CLNNNNIGQIPANLLKDCKALQNISL 119 (167)
Q Consensus 94 ~l~~n~l~~~~~~~~~~~~~L~~l~l 119 (167)
++.+|.+..++..+|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999989999999999864
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=4.4e-10 Score=84.98 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=91.2
Q ss_pred CcccCCCCCCC-chh----h-hCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhccC
Q 031005 1 MTLDGNRITSL-PDE----L-GQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSC 64 (167)
Q Consensus 1 L~l~~~~i~~l-~~~----~-~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l 64 (167)
|++++|.++.. ... + ...+.|++|++++|.++. ++..+...++|+.|++++|.+.. ++..+...
T Consensus 131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 47888888732 222 3 346889999999999874 45566788999999999999883 35567778
Q ss_pred CCCCeEEcCCCcCCc-----cchhHhcCCCcCEEEccCCcCCCCchHHhhCCCC-----CceEE--cccCCCChh
Q 031005 65 YSLEELQANDNLIGE-----LPASICNLIHLKSLCLNNNNIGQIPANLLKDCKA-----LQNIS--LHNNPISMD 127 (167)
Q Consensus 65 ~~L~~l~l~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~-----L~~l~--l~~n~~~~~ 127 (167)
++|+.|++++|.++. ++..+...++|++|++++|.++......+..+.. ++.+. +.++.+...
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 899999999999974 3455667899999999999997655544444322 66666 666666544
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.92 E-value=1e-09 Score=75.17 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=91.1
Q ss_pred hhhCCCCCCEEEeeCC-cCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhccCCCCCeEEcCCCcCCc---
Q 031005 14 ELGQLVRLERLSILGN-MLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSCYSLEELQANDNLIGE--- 79 (167)
Q Consensus 14 ~~~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l~~L~~l~l~~~~~~~--- 79 (167)
.+...+.|++|++++| .+.. +...+...++|+.|++++|.+.. +...+...++|++|++++|.++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4567889999999999 8873 44567778999999999999983 35566677899999999999973
Q ss_pred --cchhHhcCCCcCEEEc--cCCcCCCCc----hHHhhCCCCCceEEcccCCCChh
Q 031005 80 --LPASICNLIHLKSLCL--NNNNIGQIP----ANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 80 --l~~~~~~~~~l~~l~l--~~n~l~~~~----~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
+...+...++|++|++ ++|.++... ...+...+.|+.|++++|.+...
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 4556777889999999 889995432 23456678999999999988755
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.81 E-value=3e-09 Score=84.33 Aligned_cols=91 Identities=11% Similarity=-0.026 Sum_probs=58.2
Q ss_pred ccCCCCCcEEEeeCCC--CCc-cchhh-ccCCCCCeEEcCCCcCCc--cchhHhcCCCcCEEEccCCcCCCC-chHHhhC
Q 031005 38 IGSLRNLVLLNVSNNK--LKS-LPESI-GSCYSLEELQANDNLIGE--LPASICNLIHLKSLCLNNNNIGQI-PANLLKD 110 (167)
Q Consensus 38 ~~~l~~L~~l~l~~n~--~~~-~~~~~-~~l~~L~~l~l~~~~~~~--l~~~~~~~~~l~~l~l~~n~l~~~-~~~~~~~ 110 (167)
+..+++|+.|+++.|. ++. .+..+ ..+++|+.|++++|.++. ++..+..+++|+.|++++|.++.. .......
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3445666666665432 331 12222 336778888888887753 344556778888888888887422 2334567
Q ss_pred CCCCceEEcccCCCChhh
Q 031005 111 CKALQNISLHNNPISMDQ 128 (167)
Q Consensus 111 ~~~L~~l~l~~n~~~~~~ 128 (167)
+++|+.|++++|.++...
T Consensus 512 l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CSSCCEEEEESCBCCTTC
T ss_pred cCccCeeECcCCcCCHHH
Confidence 888888888888887653
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=9.3e-09 Score=70.33 Aligned_cols=101 Identities=23% Similarity=0.274 Sum_probs=80.8
Q ss_pred CcccCC-CCC-----CCchhhhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCc-----cchhhccC
Q 031005 1 MTLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKS-----LPESIGSC 64 (167)
Q Consensus 1 L~l~~~-~i~-----~l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~-----~~~~~~~l 64 (167)
|++++| .+. .+...+...+.|++|++++|.+.. +...+...++|+.|++++|.+.. +...+...
T Consensus 41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n 120 (185)
T 1io0_A 41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN 120 (185)
T ss_dssp EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence 467777 776 245567788999999999999873 34566777899999999999983 45667778
Q ss_pred CCCCeEEc--CCCcCCc-----cchhHhcCCCcCEEEccCCcCC
Q 031005 65 YSLEELQA--NDNLIGE-----LPASICNLIHLKSLCLNNNNIG 101 (167)
Q Consensus 65 ~~L~~l~l--~~~~~~~-----l~~~~~~~~~l~~l~l~~n~l~ 101 (167)
++|++|++ ++|.++. +...+...++|++|++++|.++
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 89999999 8899873 4456677889999999999874
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.66 E-value=1.6e-08 Score=80.15 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=32.3
Q ss_pred hhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCCccchhhccCCCCCeEEcC
Q 031005 15 LGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLKSLPESIGSCYSLEELQAN 73 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~L~~l~l~ 73 (167)
+..+++|+.|++++|.++. ++..+..+++|+.|++++|.+..++..+..+++|++++++
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 3455666666666666541 2333445566666666666555555445555555555554
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.54 E-value=1.7e-07 Score=71.54 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=54.8
Q ss_pred hhhhCCCCCCEEEeeCCcCccccc-cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccch-hHhcCCC
Q 031005 13 DELGQLVRLERLSILGNMLTCLPE-TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELPA-SICNLIH 89 (167)
Q Consensus 13 ~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~~-~~~~~~~ 89 (167)
.+|..+.+|+.+++..|+++.++. .|. ..+|+.+.+.. .+..++. +|..+++|+.+++..+ ++.++. .|.. ++
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 346677777777777777776653 333 46666666653 3555533 5666777777777554 222221 2222 33
Q ss_pred cCEEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005 90 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 90 l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
|+.+.+ .+.+..++..+|..|++|+.+.+.++
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 444444 22333444444444444444444443
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=4.7e-07 Score=65.36 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=30.1
Q ss_pred cCCCCCeEEcCCCcCCcc---chhHhcCCCcCEEEccCCcCCCCch-HHhhCCCCCceEEcccCCCC
Q 031005 63 SCYSLEELQANDNLIGEL---PASICNLIHLKSLCLNNNNIGQIPA-NLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 63 ~l~~L~~l~l~~~~~~~l---~~~~~~~~~l~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~ 125 (167)
.++.|+.|++++|.+..+ +..+..+++|+.|++++|.+..+.. ..+..+ .|+.|++++|+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 345555555555555433 2334455555555555555544422 112222 5555555555554
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.43 E-value=1.5e-07 Score=74.60 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=18.9
Q ss_pred CCCCCCEEEeeCC-cCcc--ccccccCCCCCcEEEeeCCCCC
Q 031005 17 QLVRLERLSILGN-MLTC--LPETIGSLRNLVLLNVSNNKLK 55 (167)
Q Consensus 17 ~l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~l~l~~n~~~ 55 (167)
.+++|+.|++++| .++. ++..+..+++|+.|++++|.++
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 3455555555555 3332 2233334555555555555443
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=2.6e-07 Score=66.70 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=67.3
Q ss_pred EEeeCCcCccccc----cccCCCCCcEEEeeCCCCCccc---hhhccCCCCCeEEcCCCcCCccchhHhcCC--CcCEEE
Q 031005 24 LSILGNMLTCLPE----TIGSLRNLVLLNVSNNKLKSLP---ESIGSCYSLEELQANDNLIGELPASICNLI--HLKSLC 94 (167)
Q Consensus 24 L~l~~n~l~~l~~----~~~~l~~L~~l~l~~n~~~~~~---~~~~~l~~L~~l~l~~~~~~~l~~~~~~~~--~l~~l~ 94 (167)
++++.|....++. ....+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..+. .+..+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEE
Confidence 5566665443332 2245788999999999888653 45678899999999999988662 233333 899999
Q ss_pred ccCCcCC-CCc------hHHhhCCCCCceEE
Q 031005 95 LNNNNIG-QIP------ANLLKDCKALQNIS 118 (167)
Q Consensus 95 l~~n~l~-~~~------~~~~~~~~~L~~l~ 118 (167)
+++|++. .+| ..++..+++|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999984 344 24578899999886
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.39 E-value=1.3e-06 Score=66.56 Aligned_cols=93 Identities=11% Similarity=0.177 Sum_probs=65.9
Q ss_pred Ccccc-ccccCCCCCcEEEeeCCCCC-----ccc-hhhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCC
Q 031005 31 LTCLP-ETIGSLRNLVLLNVSNNKLK-----SLP-ESIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQ 102 (167)
Q Consensus 31 l~~l~-~~~~~l~~L~~l~l~~n~~~-----~~~-~~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~ 102 (167)
++.++ ..|..+++|+.+.+.++.+. .++ ..|..+++|+.+.+.. .++.++ ..|..+.+|+.+.+..+ +..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44443 45677778888888776554 453 3677788888888873 466664 46777788888888544 777
Q ss_pred CchHHhhCCCCCceEEcccCCCCh
Q 031005 103 IPANLLKDCKALQNISLHNNPISM 126 (167)
Q Consensus 103 ~~~~~~~~~~~L~~l~l~~n~~~~ 126 (167)
+...+|..+ +|+.+.+.+|.+..
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCB
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcc
Confidence 777778888 88888888886654
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.29 E-value=6.1e-07 Score=71.06 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=69.6
Q ss_pred hCCCCCCEEEeeCCcCcc-cccccc-CCCCCcEEEeeCC-CCCc--cchhhccCCCCCeEEcCCCcCCcc-----chhHh
Q 031005 16 GQLVRLERLSILGNMLTC-LPETIG-SLRNLVLLNVSNN-KLKS--LPESIGSCYSLEELQANDNLIGEL-----PASIC 85 (167)
Q Consensus 16 ~~l~~L~~L~l~~n~l~~-l~~~~~-~l~~L~~l~l~~n-~~~~--~~~~~~~l~~L~~l~l~~~~~~~l-----~~~~~ 85 (167)
..+++|++|++++|.++. .+..+. .+++|+.|++.+| .++. ++.....+++|++|++++|.++.. +....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 457788888888887764 233443 5778888888888 4543 344445788888888888876532 22223
Q ss_pred cCCCcCEEEccCCcCCCCch----HHhhCCCCCceEEcccC
Q 031005 86 NLIHLKSLCLNNNNIGQIPA----NLLKDCKALQNISLHNN 122 (167)
Q Consensus 86 ~~~~l~~l~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n 122 (167)
.+++|+.|++++|. ..+.. .+...+++|+.|++++|
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55688888888776 33322 22345688888888876
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=5.5e-06 Score=62.33 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=54.0
Q ss_pred CchhhhCCCCCCEEEeeCCcCccccccccCCCCCcEEEeeCCCCCcc-chhh--ccCCCCCeEEcCC--Cc------CCc
Q 031005 11 LPDELGQLVRLERLSILGNMLTCLPETIGSLRNLVLLNVSNNKLKSL-PESI--GSCYSLEELQAND--NL------IGE 79 (167)
Q Consensus 11 l~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~l~l~~n~~~~~-~~~~--~~l~~L~~l~l~~--~~------~~~ 79 (167)
+...+..+|+|+.|.++++.-..++. + .+++|+.|++..+.+..- ...+ ..+++|+.|++.. +. +..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 44556677888888887773222332 2 255666666666555421 1122 2456666665531 11 111
Q ss_pred cchhH--hcCCCcCEEEccCCcCCC-CchHHh--hCCCCCceEEcccCCCCh
Q 031005 80 LPASI--CNLIHLKSLCLNNNNIGQ-IPANLL--KDCKALQNISLHNNPISM 126 (167)
Q Consensus 80 l~~~~--~~~~~l~~l~l~~n~l~~-~~~~~~--~~~~~L~~l~l~~n~~~~ 126 (167)
+...+ ..+++|++|++.+|.++. ....+. ..++.|+.|+++.|.+..
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 11111 134566666666555532 111111 134456666666555553
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.17 E-value=3.1e-06 Score=63.71 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCCCCCEEEeeCCcCcc-ccccc--cCCCCCcEEEeeCC--C------CCccchhh--ccCCCCCeEEcCCCcCCc-cch
Q 031005 17 QLVRLERLSILGNMLTC-LPETI--GSLRNLVLLNVSNN--K------LKSLPESI--GSCYSLEELQANDNLIGE-LPA 82 (167)
Q Consensus 17 ~l~~L~~L~l~~n~l~~-l~~~~--~~l~~L~~l~l~~n--~------~~~~~~~~--~~l~~L~~l~l~~~~~~~-l~~ 82 (167)
.+++|+.|++..+.++. ....+ ..+++|+.|+++.+ . +..+.+.+ ..+++|+.|++.+|.++. .+.
T Consensus 191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 37899999999998764 22333 36899999998632 1 22222223 247899999999998863 222
Q ss_pred hHh---cCCCcCEEEccCCcCCCCchHH----hhCCCCCceEEcccCCCChhhhcc
Q 031005 83 SIC---NLIHLKSLCLNNNNIGQIPANL----LKDCKALQNISLHNNPISMDQFQQ 131 (167)
Q Consensus 83 ~~~---~~~~l~~l~l~~n~l~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~ 131 (167)
.+. .+++|++|+++.|.++..-... +..+++|+.|+++.|.+.......
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 332 4679999999999885432111 245789999999999988654443
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=1.8e-05 Score=59.95 Aligned_cols=121 Identities=16% Similarity=0.357 Sum_probs=89.8
Q ss_pred hhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCc
Q 031005 14 ELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHL 90 (167)
Q Consensus 14 ~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l 90 (167)
+|..+..|+.+.+..+- ..+. ..|..+..|+.+.+. +.+..+++ .|..+.+|+.+.+..+ ++.+. ..|..+.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 46778888888886553 3443 567888999999885 46777755 7888999999999765 65563 578888999
Q ss_pred CEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChhhhccccchHHH
Q 031005 91 KSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMDQFQQMEGFEEF 138 (167)
Q Consensus 91 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~l 138 (167)
+.+.+.. .+..+...+|.+|.+|+.+++.++......+....+++.+
T Consensus 337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i 383 (394)
T 4gt6_A 337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNL 383 (394)
T ss_dssp CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC---
T ss_pred CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEE
Confidence 9999964 4888999899999999999999876544434444455544
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.04 E-value=6.9e-06 Score=52.81 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=41.7
Q ss_pred eEEcCCCcCC--ccchhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCceEEcccCCCChh
Q 031005 69 ELQANDNLIG--ELPASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPISMD 127 (167)
Q Consensus 69 ~l~l~~~~~~--~l~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 127 (167)
.++-+++.++ .+|..+. .++++|+|++|.|+.++..+|..+++|+.|++.+|++.++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5555666665 6664332 3678888888888888887788888888888888888765
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1e-05 Score=54.64 Aligned_cols=82 Identities=10% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCCcEEEeeCCCCCcc-chhhccCCCCCeEEcCCCc-CCcc-chhHhcC----CCcCEEEccCCc-CCCCchHHhhCCCC
Q 031005 42 RNLVLLNVSNNKLKSL-PESIGSCYSLEELQANDNL-IGEL-PASICNL----IHLKSLCLNNNN-IGQIPANLLKDCKA 113 (167)
Q Consensus 42 ~~L~~l~l~~n~~~~~-~~~~~~l~~L~~l~l~~~~-~~~l-~~~~~~~----~~l~~l~l~~n~-l~~~~~~~~~~~~~ 113 (167)
..|+.||++++.++.. -..+..+++|+.|++++|. ++.- -..+... ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3466666666665522 1234566666666666663 4421 1223332 357777777764 54433333566777
Q ss_pred CceEEcccCC
Q 031005 114 LQNISLHNNP 123 (167)
Q Consensus 114 L~~l~l~~n~ 123 (167)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.00 E-value=3.5e-05 Score=53.00 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=82.1
Q ss_pred hhCCCCCCEEEeeCC-cCc-----cccccccCCCCCcEEEeeCCCCC-----ccchhhccCCCCCeEEcCCCcCCc----
Q 031005 15 LGQLVRLERLSILGN-MLT-----CLPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCYSLEELQANDNLIGE---- 79 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n-~l~-----~l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~~L~~l~l~~~~~~~---- 79 (167)
+..-+.|++|+++++ .+. .+...+..-..|+.|++++|.+. .+.+.+..-.+|+.|+++.|.|+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456778999999986 776 24566777789999999999998 345566677899999999999972
Q ss_pred -cchhHhcCCCcCEEEccCC---cCCCC----chHHhhCCCCCceEEcccCCCC
Q 031005 80 -LPASICNLIHLKSLCLNNN---NIGQI----PANLLKDCKALQNISLHNNPIS 125 (167)
Q Consensus 80 -l~~~~~~~~~l~~l~l~~n---~l~~~----~~~~~~~~~~L~~l~l~~n~~~ 125 (167)
+...+.....|+.|++++| .++.. -..++..-+.|+.++++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3445666678999999865 44321 1234566778999999876544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.89 E-value=5.4e-05 Score=56.83 Aligned_cols=105 Identities=24% Similarity=0.361 Sum_probs=70.6
Q ss_pred hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcC
Q 031005 15 LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLK 91 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~ 91 (167)
+..+..|+.+.+..+ ++.+. ..|....+|+.+.+.. .+..++. .|..+.+|+.+.+.++.++.++ ..|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 455666666666554 55553 4566677777777654 3555543 5677788888888777777664 4677777888
Q ss_pred EEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005 92 SLCLNNNNIGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 92 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
.+.+..+ +..+...+|.+|.+|+.+.+..+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8887543 67777777888888887777544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=3.1e-05 Score=52.28 Aligned_cols=98 Identities=9% Similarity=0.139 Sum_probs=68.0
Q ss_pred CCCCCEEEeeCCcCccc-cccccCCCCCcEEEeeCCC-CCcc-chhhccC----CCCCeEEcCCCc-CCcc-chhHhcCC
Q 031005 18 LVRLERLSILGNMLTCL-PETIGSLRNLVLLNVSNNK-LKSL-PESIGSC----YSLEELQANDNL-IGEL-PASICNLI 88 (167)
Q Consensus 18 l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~l~l~~n~-~~~~-~~~~~~l----~~L~~l~l~~~~-~~~l-~~~~~~~~ 88 (167)
-..|+.|++++|.++.. -..+..+++|+.|++++|. ++.- -..+..+ ++|++|++++|. ++.- -..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34689999999998853 2556889999999999994 6621 1234443 479999999984 7632 13567789
Q ss_pred CcCEEEccCCc-CCCCc---hHHhhCCCCCc
Q 031005 89 HLKSLCLNNNN-IGQIP---ANLLKDCKALQ 115 (167)
Q Consensus 89 ~l~~l~l~~n~-l~~~~---~~~~~~~~~L~ 115 (167)
+|++|++++++ ++... ...-..+|.++
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 99999999996 44322 12224566654
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=4.6e-05 Score=52.41 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=74.4
Q ss_pred cccCC-CCC-----CCchhhhCCCCCCEEEeeCCcCcc-----ccccccCCCCCcEEEeeCCCCC-----ccchhhccCC
Q 031005 2 TLDGN-RIT-----SLPDELGQLVRLERLSILGNMLTC-----LPETIGSLRNLVLLNVSNNKLK-----SLPESIGSCY 65 (167)
Q Consensus 2 ~l~~~-~i~-----~l~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~l~ 65 (167)
+++++ +|. .+...+..-..|+.|++++|++.. +...+..-++|+.|++++|.|. .+.+.+..-.
T Consensus 47 ~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~ 126 (197)
T 1pgv_A 47 NINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQ 126 (197)
T ss_dssp ECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTC
T ss_pred ECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCC
Confidence 45553 555 245667788899999999999982 4556677789999999999998 2345666677
Q ss_pred CCCeEEcCCC---cCC-----ccchhHhcCCCcCEEEccCCcC
Q 031005 66 SLEELQANDN---LIG-----ELPASICNLIHLKSLCLNNNNI 100 (167)
Q Consensus 66 ~L~~l~l~~~---~~~-----~l~~~~~~~~~l~~l~l~~n~l 100 (167)
.|+.|+++++ .++ .+...+...++|..++++.|.+
T Consensus 127 tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 127 SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 8999999865 444 2345667778999999987764
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.55 E-value=0.00024 Score=53.69 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=50.9
Q ss_pred ccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCCc
Q 031005 38 IGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKALQ 115 (167)
Q Consensus 38 ~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L~ 115 (167)
|..+.+|+.+.+..+ +..+++ +|..+.+|+.+++..+ ++.++ ..|..+.+|+.+.+..+ +..+...+|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 445566666666543 555533 5666777777777543 55553 45666677777777555 6666666677777777
Q ss_pred eEEcccC
Q 031005 116 NISLHNN 122 (167)
Q Consensus 116 ~l~l~~n 122 (167)
.+.+..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 7776543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.38 E-value=0.00045 Score=44.20 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=33.1
Q ss_pred CEEEeeCCcCc--cccccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCC
Q 031005 22 ERLSILGNMLT--CLPETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIG 78 (167)
Q Consensus 22 ~~L~l~~n~l~--~l~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~ 78 (167)
..++.++++++ .+|..+. .+++.|++++|.|+.+|+ .|..+++|+.|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666666666 6664321 346666777777766644 4455666666666666553
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.34 E-value=0.00049 Score=51.98 Aligned_cols=106 Identities=15% Similarity=0.294 Sum_probs=74.3
Q ss_pred hhhhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCC
Q 031005 13 DELGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIH 89 (167)
Q Consensus 13 ~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~ 89 (167)
.+|..+..|+.+.+. +.++.++ ..|..+.+|+.+.+.. .++.+.+ +|.++.+|+.+.+..+ ++.+. ..|.++.+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 347788999999986 5577776 5789999999999976 4777754 7899999999999655 66674 57889999
Q ss_pred cCEEEccCCcCCCCchHHhhCCCCCceEEcccCCC
Q 031005 90 LKSLCLNNNNIGQIPANLLKDCKALQNISLHNNPI 124 (167)
Q Consensus 90 l~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~ 124 (167)
|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999999887531 12356677788887766544
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.22 E-value=0.0014 Score=49.08 Aligned_cols=105 Identities=17% Similarity=0.343 Sum_probs=78.8
Q ss_pred hhCCCCCCEEEeeCCcCcccc-ccccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcC
Q 031005 15 LGQLVRLERLSILGNMLTCLP-ETIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLK 91 (167)
Q Consensus 15 ~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~ 91 (167)
+.....++.+.+..+ +..+. ..|.....|+.+.+..+ ++.+.. .|..+..|+.+.+..+ +..++ ..|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 445566666666543 44443 46677888888888664 666643 6778889999988654 55554 4677889999
Q ss_pred EEEccCCcCCCCchHHhhCCCCCceEEcccC
Q 031005 92 SLCLNNNNIGQIPANLLKDCKALQNISLHNN 122 (167)
Q Consensus 92 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 122 (167)
.+.+.++.+..++..+|.+|.+|+.+.+..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 9999999999999988999999999999754
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.86 E-value=0.0028 Score=47.78 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=56.4
Q ss_pred cccCCCCCcEEEeeCCCCCccch-hhccCCCCCeEEcCCCcCCccc-hhHhcCCCcCEEEccCCcCCCCchHHhhCCCCC
Q 031005 37 TIGSLRNLVLLNVSNNKLKSLPE-SIGSCYSLEELQANDNLIGELP-ASICNLIHLKSLCLNNNNIGQIPANLLKDCKAL 114 (167)
Q Consensus 37 ~~~~l~~L~~l~l~~n~~~~~~~-~~~~l~~L~~l~l~~~~~~~l~-~~~~~~~~l~~l~l~~n~l~~~~~~~~~~~~~L 114 (167)
.|.....++.+...... +++ .|..+.+|+.+.+..+ ++.++ ..|..+.+|+.+++.. .+..+...+|.+|.+|
T Consensus 271 ~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTC
T ss_pred ccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCC
Confidence 34444445444443322 222 4667778888888654 55553 4677888999999964 4888888889999999
Q ss_pred ceEEcccCCCC
Q 031005 115 QNISLHNNPIS 125 (167)
Q Consensus 115 ~~l~l~~n~~~ 125 (167)
+.+.+..+ +.
T Consensus 346 ~~i~lp~~-l~ 355 (394)
T 4fs7_A 346 SNINFPLS-LR 355 (394)
T ss_dssp CEECCCTT-CC
T ss_pred CEEEECcc-cc
Confidence 99998766 44
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.82 E-value=6.6 Score=23.33 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=25.0
Q ss_pred CCCccc-hhhccCCCCCeEEcCCCcCCcc-chhHhcCCCcCEEEccCC
Q 031005 53 KLKSLP-ESIGSCYSLEELQANDNLIGEL-PASICNLIHLKSLCLNNN 98 (167)
Q Consensus 53 ~~~~~~-~~~~~l~~L~~l~l~~~~~~~l-~~~~~~~~~l~~l~l~~n 98 (167)
.++.+. ..|.++.+|+.+.+..+ ++.+ ...|..+.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 334442 35666777777766544 3333 335566666666666443
Done!