Query 031006
Match_columns 167
No_of_seqs 103 out of 135
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09478 CBM49: Carbohydrate b 96.8 0.0054 1.2E-07 43.6 6.7 75 74-154 1-79 (80)
2 PLN02171 endoglucanase 88.9 0.95 2.1E-05 44.0 6.0 77 71-155 534-615 (629)
3 PF14016 DUF4232: Protein of u 49.9 48 0.001 25.0 5.2 78 69-156 1-82 (131)
4 PLN02340 endoglucanase 44.5 18 0.00039 35.3 2.6 78 70-153 518-600 (614)
5 PF10633 NPCBM_assoc: NPCBM-as 43.0 54 0.0012 22.4 4.2 24 87-112 5-28 (78)
6 PF06682 DUF1183: Protein of u 42.2 1.4E+02 0.0031 27.0 7.7 56 68-127 58-113 (318)
7 PF07705 CARDB: CARDB; InterP 35.4 1.4E+02 0.003 20.1 5.4 68 73-157 3-72 (101)
8 COG3900 Predicted periplasmic 30.8 31 0.00068 30.5 1.7 26 74-99 190-224 (262)
9 PF03330 DPBB_1: Rare lipoprot 30.5 31 0.00067 23.8 1.4 29 89-118 38-66 (78)
10 cd00602 IPT_TF IPT domain of e 25.4 1.7E+02 0.0037 22.1 4.7 83 61-153 18-100 (101)
11 PF02933 CDC48_2: Cell divisio 23.1 60 0.0013 21.7 1.7 24 138-162 15-38 (64)
12 PF01345 DUF11: Domain of unkn 23.0 2.1E+02 0.0046 19.2 4.4 30 81-112 35-64 (76)
13 KOG3358 Uncharacterized secret 21.0 84 0.0018 27.0 2.5 41 113-155 60-101 (211)
No 1
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=96.85 E-value=0.0054 Score=43.64 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=55.4
Q ss_pred eeEEeeecCCCCC-Cc--ceEEEEEEcCccCCccceeEEEEcCCcccceeeCCcceeeecCCceEecC-CcccCCCCeEE
Q 031006 74 IVITQGPTGIMPN-GI--PTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNE-GKPLVSGGTLK 149 (167)
Q Consensus 74 IsVsQ~~TG~~v~-G~--Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~-G~PI~~g~~Vs 149 (167)
|+|.|..+..+.. |. -+|.|+|+|.+ .=+++++++....+.+ +--=+.+..++..-+=+ -.+|.+|++.+
T Consensus 1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~--~~~I~~~~i~~~~l~~----~iW~l~~~~~~~y~lPs~~~~i~pg~s~~ 74 (80)
T PF09478_consen 1 ITITQTLVNSWTENGQTYTQYDVTITNNG--SKPIKSLKISIDNLYG----SIWGLDKVSGNTYTLPSYQPTIKPGQSFT 74 (80)
T ss_pred CEEEEEEEeEEEeCCEEEEEEEEEEEECC--CCeEEEEEEEECccch----hheeEEeccCCEEECCccccccCCCCEEE
Confidence 6889999887744 43 56999999999 6799999999997751 22222235566777633 34999999999
Q ss_pred EEEec
Q 031006 150 FQYAN 154 (167)
Q Consensus 150 F~YAw 154 (167)
|-|-.
T Consensus 75 FGYI~ 79 (80)
T PF09478_consen 75 FGYIS 79 (80)
T ss_pred EEEEe
Confidence 99953
No 2
>PLN02171 endoglucanase
Probab=88.90 E-value=0.95 Score=43.95 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=53.8
Q ss_pred CCCeeEEeeecCCCCC---CcceEEEEEEcCccCCccceeEEEEcCCcc-cceeeCCcceeeecCCceEecCCc-ccCCC
Q 031006 71 KEDIVITQGPTGIMPN---GIPTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLVNEGK-PLVSG 145 (167)
Q Consensus 71 ~sDIsVsQ~~TG~~v~---G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLVN~G~-PI~~g 145 (167)
.+.|+|.|..++.+.. +..+|+|+|+|++ ..|++++++.=..+- +.= .+.+ .++...+=+-. .|.+|
T Consensus 534 ~~ei~i~q~v~~sW~~~g~~y~qy~v~I~N~s--~~~ik~i~i~~~~~~~~iW----~v~~--~~ngytlPs~~~sL~aG 605 (629)
T PLN02171 534 SSPIEIEQKATASWKAKGRTYYRYSTTVTNRS--AKTLKELHLGISKLYGPLW----GLTK--AGYGYVLPSWMPSLPAG 605 (629)
T ss_pred cceeEEEEEEEEEEEcCCceEEEEEEEEEECC--CCceeeeeeeeccccccch----heee--cCCcccCchhhcccCCC
Confidence 3479999999988753 4677999999999 899999999754442 211 1111 22334443332 78889
Q ss_pred CeEEEEEecC
Q 031006 146 GTLKFQYANT 155 (167)
Q Consensus 146 ~~VsF~YAw~ 155 (167)
+..+|-|-+.
T Consensus 606 ~s~tFgyI~~ 615 (629)
T PLN02171 606 KSLEFVYVHS 615 (629)
T ss_pred CeeEEEeecC
Confidence 9999999965
No 3
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=49.86 E-value=48 Score=24.96 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=49.7
Q ss_pred CCCCCeeEEeeecCCCCCCcceEEEEEEcCccCCccceeEEEEcCCcccceeeCCccee----eecCCceEecCCcccCC
Q 031006 69 CTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILK----RLSYNDCLVNEGKPLVS 144 (167)
Q Consensus 69 Cs~sDIsVsQ~~TG~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifr----rl~~d~CLVN~G~PI~~ 144 (167)
|...|++|+-+.... ..|...+.|+++|.=...|.+ .||..+..+|..=-. ....+. -..--.|.+
T Consensus 1 C~~~~L~~~~~~~~~-~~g~~~~~l~~tN~s~~~C~l-------~G~P~v~~~~~~g~~~~~~~~~~~~--~~~~vtL~P 70 (131)
T PF14016_consen 1 CTAADLSVTVGPVDA-GAGQRHATLTFTNTSDTPCTL-------YGYPGVALVDADGAPLGVPAVREGP--PPRPVTLAP 70 (131)
T ss_pred CCcccEEEEEecccC-CCCccEEEEEEEECCCCcEEe-------ccCCcEEEECCCCCcCCccccccCC--CCCcEEECC
Confidence 888999998876633 458889999999976556777 567666665442221 000111 122235678
Q ss_pred CCeEEEEEecCC
Q 031006 145 GGTLKFQYANTF 156 (167)
Q Consensus 145 g~~VsF~YAw~~ 156 (167)
|++..|.-.|..
T Consensus 71 G~sA~a~l~~~~ 82 (131)
T PF14016_consen 71 GGSAYAGLRWSN 82 (131)
T ss_pred CCEEEEEEEEec
Confidence 888888777754
No 4
>PLN02340 endoglucanase
Probab=44.46 E-value=18 Score=35.27 Aligned_cols=78 Identities=22% Similarity=0.178 Sum_probs=51.6
Q ss_pred CCCCeeEEeeecCCCCCC---cceEEEEEEcCccCCccceeEEEEcCCcc-cceeeCCcceeeecCCceEecCC-cccCC
Q 031006 70 TKEDIVITQGPTGIMPNG---IPTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLVNEG-KPLVS 144 (167)
Q Consensus 70 s~sDIsVsQ~~TG~~v~G---~Pey~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLVN~G-~PI~~ 144 (167)
+..++.+.|.-+..+..+ .-+|.|+|+|+| .=|++.+++.=..+- ..--|.|.+=+ +.+.+-+= ..|.+
T Consensus 518 ~~~~~e~~~~~~~sw~~~g~~y~~~~v~i~N~s--~~pi~~l~~~~~~l~g~lwgl~~~~~~----~~y~~p~~~~tl~~ 591 (614)
T PLN02340 518 SGAPVEFVHSITNTWTAGGTTYYRHKVIIKNKS--QKPITDLKLVIEDLSGPIWGLNPTKEK----NTYELPQWQKVLQP 591 (614)
T ss_pred CCCchhhhhhheeeeecCCceEEEEEEEEEeCC--CCCchhhhhhhhhcccchhcceecccc----CCccCchhhhccCC
Confidence 455677778887766443 566999999999 679998888764443 22223332112 33444333 47888
Q ss_pred CCeEEEEEe
Q 031006 145 GGTLKFQYA 153 (167)
Q Consensus 145 g~~VsF~YA 153 (167)
|+.++|.|-
T Consensus 592 g~~~~f~yi 600 (614)
T PLN02340 592 GSQLSFVYV 600 (614)
T ss_pred CCeeEEEec
Confidence 999999998
No 5
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=43.01 E-value=54 Score=22.42 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=15.0
Q ss_pred CcceEEEEEEcCccCCccceeEEEEc
Q 031006 87 GIPTYTVEIMNACETGCNISEIHLNC 112 (167)
Q Consensus 87 G~Pey~VtI~N~C~~~C~~s~V~L~C 112 (167)
..-+++|+|.|.+ .-+..++.|+-
T Consensus 5 ~~~~~~~tv~N~g--~~~~~~v~~~l 28 (78)
T PF10633_consen 5 ETVTVTLTVTNTG--TAPLTNVSLSL 28 (78)
T ss_dssp EEEEEEEEEE--S--SS-BSS-EEEE
T ss_pred CEEEEEEEEEECC--CCceeeEEEEE
Confidence 3456999999999 56777777765
No 6
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=42.20 E-value=1.4e+02 Score=27.03 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=37.7
Q ss_pred CCCCCCeeEEeeecCCCCCCcceEEEEEEcCccCCccceeEEEEcCCcccceeeCCccee
Q 031006 68 RCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILK 127 (167)
Q Consensus 68 ~Cs~sDIsVsQ~~TG~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifr 127 (167)
.|.+-.+.|-|=.--..-+-..||+-+-. =+..--+..|.|.|.|+.+.+ ||=|||
T Consensus 58 ~c~~~~p~vvqC~N~G~dg~dvqW~C~A~--Lp~~~klG~~~V~CEGY~~pd--DpyvLk 113 (318)
T PF06682_consen 58 GCDLYEPDVVQCTNQGYDGEDVQWECKAD--LPNEYKLGSTDVSCEGYDYPD--DPYVLK 113 (318)
T ss_pred cccccCcceEEEEecCCCCcccceEEeCC--CCcceeecceEEeeecccCCC--CceecC
Confidence 47776777777544223344677874431 123456788999999999965 999998
No 7
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=35.39 E-value=1.4e+02 Score=20.12 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=32.2
Q ss_pred CeeE--EeeecCCCCCCcceEEEEEEcCccCCccceeEEEEcCCcccceeeCCcceeeecCCceEecCCcccCCCCeEEE
Q 031006 73 DIVI--TQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKF 150 (167)
Q Consensus 73 DIsV--sQ~~TG~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~VsF 150 (167)
||.| ...+.-..++..-+..|+|.|.= .-+..++.+. .+.+-..+ . .-.| ..|.+|+..++
T Consensus 3 DL~v~~~~~~~~~~~g~~~~i~~~V~N~G--~~~~~~~~v~--~~~~~~~~-----~-----~~~i---~~L~~g~~~~v 65 (101)
T PF07705_consen 3 DLTVSITVSPSNVVPGEPVTITVTVKNNG--TADAENVTVR--LYLDGNSV-----S-----TVTI---PSLAPGESETV 65 (101)
T ss_dssp -EEE-EEEC-SEEETTSEEEEEEEEEE-S--SS-BEEEEEE--EEETTEEE-----E-----EEEE---SEB-TTEEEEE
T ss_pred CEEEEEeeCCCcccCCCEEEEEEEEEECC--CCCCCCEEEE--EEECCcee-----c-----cEEE---CCcCCCcEEEE
Confidence 6666 22222222444555999999976 3345555554 11111111 1 1112 57888887666
Q ss_pred EEecCCc
Q 031006 151 QYANTFL 157 (167)
Q Consensus 151 ~YAw~~~ 157 (167)
++.|..+
T Consensus 66 ~~~~~~~ 72 (101)
T PF07705_consen 66 TFTWTPP 72 (101)
T ss_dssp EEEEE-S
T ss_pred EEEEEeC
Confidence 6666543
No 8
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=30.78 E-value=31 Score=30.48 Aligned_cols=26 Identities=42% Similarity=0.400 Sum_probs=21.2
Q ss_pred eeEEeee---------cCCCCCCcceEEEEEEcCc
Q 031006 74 IVITQGP---------TGIMPNGIPTYTVEIMNAC 99 (167)
Q Consensus 74 IsVsQ~~---------TG~~v~G~Pey~VtI~N~C 99 (167)
|=|+|+. |.+++.|-|||+|++.|.=
T Consensus 190 IWIsqGeqpvp~k~VITsk~v~g~PqYtv~fsnwk 224 (262)
T COG3900 190 IWISQGEQPVPLKYVITSKDVPGEPQYTVVFSNWK 224 (262)
T ss_pred EEeecCCCCcceeEEEEecccCCCCcEEEEEcccc
Confidence 5566654 5778899999999999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=30.46 E-value=31 Score=23.77 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=21.3
Q ss_pred ceEEEEEEcCccCCccceeEEEEcCCcccc
Q 031006 89 PTYTVEIMNACETGCNISEIHLNCGWFSSA 118 (167)
Q Consensus 89 Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa 118 (167)
-.-.|+|+++|+ .|+..++-|+=..|..-
T Consensus 38 ksV~v~V~D~Cp-~~~~~~lDLS~~aF~~l 66 (78)
T PF03330_consen 38 KSVTVTVVDRCP-GCPPNHLDLSPAAFKAL 66 (78)
T ss_dssp CEEEEEEEEE-T-TSSSSEEEEEHHHHHHT
T ss_pred CeEEEEEEccCC-CCcCCEEEeCHHHHHHh
Confidence 567899999995 68888888876666543
No 10
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=25.43 E-value=1.7e+02 Score=22.05 Aligned_cols=83 Identities=22% Similarity=0.208 Sum_probs=51.6
Q ss_pred cccccCCCCCCCCeeEEeeecCCCCCCcceEEEEEEcCccCCccceeEEEEcCCcccceeeCCcceeeecCCceEecCCc
Q 031006 61 EPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGK 140 (167)
Q Consensus 61 ~~~~~~~~Cs~sDIsVsQ~~TG~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~ 140 (167)
|-...++.=.+.||.|.=..... |...|+....=.+. +|+..|--|....--|+.+=+.+.-..-|++.-.
T Consensus 18 ev~Ll~~k~~k~dikV~F~e~~~---g~~~WE~~~~f~~~------dv~q~aiv~~tP~y~~~~i~~pV~V~i~L~r~~~ 88 (101)
T cd00602 18 EVFLLCDKVNKPDIKVWFGEKGP---GETVWEAEAMFRQE------DVRQVAIVFKTPPYHNKWITRPVQVPIQLVRPDD 88 (101)
T ss_pred EEEEEecCCCCCCCEEEEEecCC---CCCeEEEEEEECHH------HceEeEEEecCCCcCCCCccccEEEEEEEEeCCC
Confidence 34444444345789876655443 88899999888772 3344555555555556666554444567787733
Q ss_pred ccCCCCeEEEEEe
Q 031006 141 PLVSGGTLKFQYA 153 (167)
Q Consensus 141 PI~~g~~VsF~YA 153 (167)
... .++..|+|-
T Consensus 89 ~~~-S~~~~FtY~ 100 (101)
T cd00602 89 RKR-SEPLTFTYT 100 (101)
T ss_pred Cee-cCCcCeEEc
Confidence 333 478999993
No 11
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=23.10 E-value=60 Score=21.68 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=18.9
Q ss_pred CCcccCCCCeEEEEEecCCcccccc
Q 031006 138 EGKPLVSGGTLKFQYANTFLYPLTV 162 (167)
Q Consensus 138 ~G~PI~~g~~VsF~YAw~~~f~L~~ 162 (167)
.|+|+..|+.|.|.|. ...++|.+
T Consensus 15 ~~~pv~~Gd~i~~~~~-~~~~~~~V 38 (64)
T PF02933_consen 15 EGRPVTKGDTIVFPFF-GQALPFKV 38 (64)
T ss_dssp TTEEEETT-EEEEEET-TEEEEEEE
T ss_pred cCCCccCCCEEEEEeC-CcEEEEEE
Confidence 4689999999999996 57777777
No 12
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.97 E-value=2.1e+02 Score=19.20 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=22.6
Q ss_pred cCCCCCCcceEEEEEEcCccCCccceeEEEEc
Q 031006 81 TGIMPNGIPTYTVEIMNACETGCNISEIHLNC 112 (167)
Q Consensus 81 TG~~v~G~Pey~VtI~N~C~~~C~~s~V~L~C 112 (167)
..-.++..-+|.++|.|.= .-+..||.|.-
T Consensus 35 ~~~~~Gd~v~ytitvtN~G--~~~a~nv~v~D 64 (76)
T PF01345_consen 35 STANPGDTVTYTITVTNTG--PAPATNVVVTD 64 (76)
T ss_pred CcccCCCEEEEEEEEEECC--CCeeEeEEEEE
Confidence 3444666778999999987 67788888764
No 13
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=20.99 E-value=84 Score=27.02 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCcccceeeCC-cceeeecCCceEecCCcccCCCCeEEEEEecC
Q 031006 113 GWFSSAHLINH-KILKRLSYNDCLVNEGKPLVSGGTLKFQYANT 155 (167)
Q Consensus 113 gGF~Sa~~VDP-~ifrrl~~d~CLVN~G~PI~~g~~VsF~YAw~ 155 (167)
.||..++.+|. .++|+..+..| +-|.||.-|++|+.+--.+
T Consensus 60 Tgv~~~dD~NSyW~Ik~~~~~~c--~rG~pikcG~~iRL~H~~T 101 (211)
T KOG3358|consen 60 TGVEGVDDSNSYWRIKPVSGTTC--ERGDPIKCGQTIRLTHLKT 101 (211)
T ss_pred ecccccccCcceEEEecCCCCcc--cCCCccccCCeEEEEEeec
Confidence 35556666666 56666677778 7788999999999987754
Done!