Query 031006
Match_columns 167
No_of_seqs 103 out of 135
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idu_A Uncharacterized protein 26.8 1.9E+02 0.0065 21.3 7.3 69 70-156 15-84 (127)
2 3d30_A YOAJ, expansin like pro 22.6 22 0.00076 28.3 0.5 37 90-127 64-100 (208)
3 3e8v_A Possible transglutamina 21.3 60 0.002 23.0 2.5 21 137-158 10-30 (82)
4 3vhs_A ATPase wrnip1; zinc fin 20.7 20 0.0007 20.9 -0.0 8 87-94 1-8 (29)
5 1b4r_A Protein (PKD1_human); P 20.6 55 0.0019 22.5 2.2 19 137-155 34-54 (80)
6 3rfr_A PMOB; membrane, oxidore 18.2 1.6E+02 0.0054 26.7 5.1 63 83-152 294-364 (419)
7 2hcz_X Beta-expansin 1A; domai 18.2 69 0.0024 26.3 2.6 25 91-117 89-115 (245)
8 1n10_A PHL P I, pollen allerge 16.5 75 0.0026 26.1 2.5 26 91-118 89-116 (241)
9 2qsv_A Uncharacterized protein 15.2 2.6E+02 0.0089 21.6 5.2 39 78-117 125-164 (220)
10 1yew_A Particulate methane mon 13.2 5.1E+02 0.017 23.1 7.0 62 83-151 260-331 (382)
No 1
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=26.83 E-value=1.9e+02 Score=21.25 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCCCeeEEeeecCCCCCCcc-eEEEEEEcCccCCccceeEEEEcCCcccceeeCCcceeeecCCceEecCCcccCCCCeE
Q 031006 70 TKEDIVITQGPTGIMPNGIP-TYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTL 148 (167)
Q Consensus 70 s~sDIsVsQ~~TG~~v~G~P-ey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~V 148 (167)
...|+.|..+.-.....|.+ ++.|+|.|.= ..+..+..|.- -+|=.+... =-+ .|.+|++-
T Consensus 15 ~~pDL~V~is~P~~v~~G~~~ti~vtV~N~G--~~~a~~~~V~l-------yvng~~v~t-----~~v----~La~G~s~ 76 (127)
T 3idu_A 15 EFPDLTVEIKGPDVVGVNKLAEYEVHVKNLG--GIGVPSTKVRV-------YINGTLYKN-----WTV----SLGPKEEK 76 (127)
T ss_dssp SSCCEEEEEESCSEECTTCCEEEEEEEEECS--SSCEEEEEEEE-------EETTEEEEE-----EEE----EECTTCEE
T ss_pred cCCCeEEEecCCCcccCCCEEEEEEEEEECC--CCccCCcEEEE-------EECCEEEee-----EEe----ccCCCCeE
Confidence 46688884443233334555 4999999977 56665555432 122222211 112 58889987
Q ss_pred EEEEecCC
Q 031006 149 KFQYANTF 156 (167)
Q Consensus 149 sF~YAw~~ 156 (167)
+|.|.|..
T Consensus 77 tv~f~~~~ 84 (127)
T 3idu_A 77 VLTFNWTP 84 (127)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEc
Confidence 77777753
No 2
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=22.60 E-value=22 Score=28.34 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=28.3
Q ss_pred eEEEEEEcCccCCccceeEEEEcCCcccceeeCCccee
Q 031006 90 TYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILK 127 (167)
Q Consensus 90 ey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifr 127 (167)
.=.|+|++.|+ .|+..++-|+=..|...-..+..++.
T Consensus 64 sv~V~v~D~CP-~C~~~~~DLS~~aF~~la~~~~G~i~ 100 (208)
T 3d30_A 64 KTTVYVTDLYP-EGARGALDLSPNAFRKIGNMKDGKIN 100 (208)
T ss_dssp EEEEEEEEECT-TCCTTCEEECHHHHHHHSCGGGSSEE
T ss_pred cEEEEEEECCC-CCCCCeEECCHHHHHHhcccCCCEEE
Confidence 35799999995 79999999988888765444565554
No 3
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=21.34 E-value=60 Score=22.98 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.0
Q ss_pred cCCcccCCCCeEEEEEecCCcc
Q 031006 137 NEGKPLVSGGTLKFQYANTFLY 158 (167)
Q Consensus 137 N~G~PI~~g~~VsF~YAw~~~f 158 (167)
.+|+|++ |..|.|.|-|...|
T Consensus 10 ~~GkPV~-gA~Vefe~yNyae~ 30 (82)
T 3e8v_A 10 AEGQPVA-DATVEFKVYNYAEF 30 (82)
T ss_dssp TTSCBCT-TCEEEEEEEETTEE
T ss_pred CCCCCCC-CCEEEEEEEEchhe
Confidence 5899995 88999999886544
No 4
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.75 E-value=20 Score=20.88 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=3.3
Q ss_pred CcceEEEE
Q 031006 87 GIPTYTVE 94 (167)
Q Consensus 87 G~Pey~Vt 94 (167)
|-|||.|+
T Consensus 1 gspef~vq 8 (29)
T 3vhs_A 1 GSPEFQVQ 8 (29)
T ss_dssp ----CEEE
T ss_pred CCCceeee
Confidence 56999994
No 5
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=20.64 E-value=55 Score=22.53 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=8.4
Q ss_pred cCCccc--CCCCeEEEEEecC
Q 031006 137 NEGKPL--VSGGTLKFQYANT 155 (167)
Q Consensus 137 N~G~PI--~~g~~VsF~YAw~ 155 (167)
.||.+. ..+..++-+|+-.
T Consensus 34 GDGs~~~~s~~~~~tHtY~~~ 54 (80)
T 1b4r_A 34 GDGSAEVDAAGPAASHRYVLP 54 (80)
T ss_dssp CSSCCEEEEETTEEEEEECSS
T ss_pred CCCCcccccCCCCCEEECCCC
Confidence 444442 3344455555443
No 6
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=18.20 E-value=1.6e+02 Score=26.68 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCCCCcceEEEEEEcCccCCccceeEEEEcCCccc--ceeeCCcceeeec-C-CceEec----CCcccCCCCeEEEEE
Q 031006 83 IMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSS--AHLINHKILKRLS-Y-NDCLVN----EGKPLVSGGTLKFQY 152 (167)
Q Consensus 83 ~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~S--a~~VDP~ifrrl~-~-d~CLVN----~G~PI~~g~~VsF~Y 152 (167)
++++.--++.++|+|+- .=|+ +=+.|++ ..-+||+++.--. | ++-|.+ +..||.+|++-+++-
T Consensus 294 ~vpgR~l~~~~~VtN~g--~~pv-----rlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~pI~PGETrt~~V 364 (419)
T 3rfr_A 294 KVPGRELTINVKVKNGT--SQPV-----RLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVV 364 (419)
T ss_dssp ESSSSEEEEEEEEECCS--SSCB-----EEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCCCBCTTCEEEEEE
T ss_pred ecCCcEEEEEEEEecCC--CCce-----EEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCCCcCCCcceEEEE
Confidence 34566788999999988 3344 4466754 5778888865211 1 223222 233999999977753
No 7
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=18.16 E-value=69 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.042 Sum_probs=20.5
Q ss_pred EEEEEEcCccCCc--cceeEEEEcCCccc
Q 031006 91 YTVEIMNACETGC--NISEIHLNCGWFSS 117 (167)
Q Consensus 91 y~VtI~N~C~~~C--~~s~V~L~CgGF~S 117 (167)
-.|+|++.| .| +..++.|+=..|..
T Consensus 89 v~V~VtD~C--~C~~~~~hfDLS~~AF~~ 115 (245)
T 2hcz_X 89 VTVYITDMN--YEPIAPYHFDLSGKAFGS 115 (245)
T ss_dssp EEEEEEEEC--CCTTSSSEEEECHHHHHH
T ss_pred EEEEEEecc--CCCCCCccEEcCHHHHHH
Confidence 589999999 58 67788888888865
No 8
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=16.54 E-value=75 Score=26.06 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=21.3
Q ss_pred EEEEEEcCccCCc--cceeEEEEcCCcccc
Q 031006 91 YTVEIMNACETGC--NISEIHLNCGWFSSA 118 (167)
Q Consensus 91 y~VtI~N~C~~~C--~~s~V~L~CgGF~Sa 118 (167)
=.|+|++.| .| +..++.|+=..|...
T Consensus 89 v~V~VtD~C--~C~~~~~hfDLS~~AF~~i 116 (241)
T 1n10_A 89 VVVHITDDN--EEPIAPYHFDLSGHAFGAM 116 (241)
T ss_dssp EEEEEEEEC--SSCSSSSEEEEEHHHHHTT
T ss_pred EEEEEeEec--CCCCCCcceecCHHHHHHh
Confidence 489999999 79 567888888888753
No 9
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=15.21 E-value=2.6e+02 Score=21.56 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=27.9
Q ss_pred eeecCCCCCCc-ceEEEEEEcCccCCccceeEEEEcCCccc
Q 031006 78 QGPTGIMPNGI-PTYTVEIMNACETGCNISEIHLNCGWFSS 117 (167)
Q Consensus 78 Q~~TG~~v~G~-Pey~VtI~N~C~~~C~~s~V~L~CgGF~S 117 (167)
.-.-|.+. |. -++.++|+|.-...=.+.+|.-+|+.+.-
T Consensus 125 ~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v~~scgct~~ 164 (220)
T 2qsv_A 125 YLDMGQLD-GETTKAAIEIRNVGAGPLRLHSVTTRNPALTA 164 (220)
T ss_dssp EEEEEECT-TSCEEEEEEEEECSSSCEEEEEEEECSTTEEE
T ss_pred EEeeeccC-CCeEEEEEEEEECCCCCEEEEEEEeCCCCEee
Confidence 33446666 54 45899999988655667788888987653
No 10
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=13.19 E-value=5.1e+02 Score=23.10 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=41.2
Q ss_pred CCCCCcceEEEEEEcCccCCccceeEEEEcCCccc--ceeeCCcceeeec-CC-------ceEecCCcccCCCCeEEEE
Q 031006 83 IMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSS--AHLINHKILKRLS-YN-------DCLVNEGKPLVSGGTLKFQ 151 (167)
Q Consensus 83 ~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~S--a~~VDP~ifrrl~-~d-------~CLVN~G~PI~~g~~VsF~ 151 (167)
++++.--.+.|+|+|+- .=|+ +=+.|++ +.=+||.+..--. +- .=.|+|-.||.+|++-+++
T Consensus 260 ~vpgR~l~~~~~VtN~g--~~pv-----rlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~ 331 (382)
T 1yew_A 260 RVPGRAMRMKLTITNHG--NSPI-----RLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVD 331 (382)
T ss_dssp ESSCSEEEEEEEEEECS--SSCE-----EEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEE
T ss_pred ecCCcEEEEEEEEEcCC--CCce-----EeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEE
Confidence 34556778999999987 3333 4467765 4578888854211 11 2356777899999997774
Done!