Query 031006
Match_columns 167
No_of_seqs 103 out of 135
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 12:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031006.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031006hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b4ra_ b.1.3.1 (A:) Polycyste 24.6 19 0.0014 23.1 2.2 13 139-151 7-19 (80)
2 d1neia_ d.253.1.1 (A:) Hypothe 17.3 29 0.0021 21.9 1.7 14 87-100 2-15 (60)
3 d3brda3 b.42.7.1 (A:381-541) D 17.1 77 0.0056 23.3 4.4 49 103-155 70-123 (161)
4 d1cf1a2 b.1.18.11 (A:183-393) 15.0 1.2E+02 0.0085 22.2 5.1 76 73-153 22-97 (211)
5 d2gu3a1 d.17.1.6 (A:99-161) Un 13.7 45 0.0033 20.8 2.0 24 75-99 19-42 (63)
6 d1tv8a_ c.1.28.3 (A:) Molybden 12.0 34 0.0025 24.9 1.1 14 92-105 15-28 (327)
7 d1twfi2 g.41.3.1 (I:50-121) RB 11.2 1.7E+02 0.012 18.3 4.3 30 64-93 24-53 (72)
8 d1exta3 g.24.1.1 (A:116-172) T 10.7 1.3E+02 0.0091 18.6 3.4 34 99-135 2-36 (57)
9 d1v43a2 b.40.6.3 (A:304-373) H 9.8 1.2E+02 0.0084 17.7 3.0 29 134-162 35-63 (70)
10 d1f3ub_ b.65.1.1 (B:) TFIIF al 9.7 61 0.0045 23.2 1.8 39 83-128 2-40 (149)
No 1
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.60 E-value=19 Score=23.05 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=6.5
Q ss_pred CcccCCCCeEEEE
Q 031006 139 GKPLVSGGTLKFQ 151 (167)
Q Consensus 139 G~PI~~g~~VsF~ 151 (167)
-.||..|+++.|.
T Consensus 7 ~~p~~~G~~v~F~ 19 (80)
T d1b4ra_ 7 HGPLASGQLAAFH 19 (80)
T ss_dssp CSCCBSSEEEEEE
T ss_pred CCCccCCCeEEEE
Confidence 3445555555554
No 2
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=17.29 E-value=29 Score=21.87 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=12.0
Q ss_pred CcceEEEEEEcCcc
Q 031006 87 GIPTYTVEIMNACE 100 (167)
Q Consensus 87 G~Pey~VtI~N~C~ 100 (167)
|+-.|.|||+|+-+
T Consensus 2 gk~~~~lTvTNnnN 15 (60)
T d1neia_ 2 GKATYTVTVTNNSN 15 (60)
T ss_dssp CCCCEEEEEEETTT
T ss_pred CcceEEEEEEeCCC
Confidence 67889999999873
No 3
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=17.08 E-value=77 Score=23.28 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=33.7
Q ss_pred ccceeEEEEc--CCcccceeeCCcceeeecCCceEecC---CcccCCCCeEEEEEecC
Q 031006 103 CNISEIHLNC--GWFSSAHLINHKILKRLSYNDCLVNE---GKPLVSGGTLKFQYANT 155 (167)
Q Consensus 103 C~~s~V~L~C--gGF~Sa~~VDP~ifrrl~~d~CLVN~---G~PI~~g~~VsF~YAw~ 155 (167)
|.=+-|+|-| .|.++ +|-++|+++-+.=++.+ ..|+..-..+.|+--.+
T Consensus 70 ~Ygs~V~Lv~~~TGv~s----ppLiIRKVdk~~~~ld~~~~ddpVSQLhK~Af~~~dt 123 (161)
T d3brda3 70 YYGSVVKLVDSVTGIAL----PRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDN 123 (161)
T ss_dssp BTTCEEEEEETTTCCBC----CCEEEEEEETTEEECCTTGGGSBCBTTEEEEEEESSC
T ss_pred EeCCEEEEEEcCCCccC----CCEEEEEEcCCeEeccCccCCCcHHhhheeEEEcCCC
Confidence 3444567777 56655 68889988866555655 47888888888876443
No 4
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=15.02 E-value=1.2e+02 Score=22.23 Aligned_cols=76 Identities=8% Similarity=0.042 Sum_probs=44.9
Q ss_pred CeeEEeeecCCCCCCcceEEEEEEcCccCCccceeEEEEcCCcccceeeCCcceeeecCCceEecCCcccCCCCeEEEEE
Q 031006 73 DIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQY 152 (167)
Q Consensus 73 DIsVsQ~~TG~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~G~PI~~g~~VsF~Y 152 (167)
.++++=.+.|-.++-.-...|+|.|.+ .=.+..|++.=-.......-.|..+++. ......++++.++++.+.+|
T Consensus 22 ~l~~~ldr~~Y~~Ge~I~v~v~i~N~s--~~~v~~i~~~l~Q~~~~~~~s~~~~~~~---Va~~e~~~~~~~~~t~~k~~ 96 (211)
T d1cf1a2 22 RLAVSLSKEIYYHGEPIPVTVAVTNST--EKTVKKIKVLVEQVTNVVLYSSDYYIKT---VAAEEAQEKVPPNSSLTKTL 96 (211)
T ss_dssp EEEEEESCSEEETTCCEEEEEEEEECS--SSCEEEEEEEEEEEEEECSSSCCEEEEE---EEEEEESCCBCTTEEEEEEE
T ss_pred EEEEEECCceEcCCCEEEEEEEEEcCC--CcceeeEEEEEEEEEEEEEecCCceEEE---EEEEEecCccCCCcceEEEE
Confidence 355555566654433334799999988 3467777766544444444456666541 22344556677777766666
Q ss_pred e
Q 031006 153 A 153 (167)
Q Consensus 153 A 153 (167)
+
T Consensus 97 ~ 97 (211)
T d1cf1a2 97 T 97 (211)
T ss_dssp E
T ss_pred E
Confidence 5
No 5
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=13.70 E-value=45 Score=20.81 Aligned_cols=24 Identities=4% Similarity=-0.017 Sum_probs=17.4
Q ss_pred eEEeeecCCCCCCcceEEEEEEcCc
Q 031006 75 VITQGPTGIMPNGIPTYTVEIMNAC 99 (167)
Q Consensus 75 sVsQ~~TG~~v~G~Pey~VtI~N~C 99 (167)
.|...+-|. -.|.|.|+|+-.|.=
T Consensus 19 ki~~v~LG~-~~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 19 KQKEVHLAR-EGNVLLWEVTYLDKE 42 (63)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEECTT
T ss_pred eeeEEeeee-ECCEEEEEEEEEeCC
Confidence 445555553 579999999999865
No 6
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=12.02 E-value=34 Score=24.89 Aligned_cols=14 Identities=14% Similarity=0.669 Sum_probs=12.2
Q ss_pred EEEEEcCccCCccc
Q 031006 92 TVEIMNACETGCNI 105 (167)
Q Consensus 92 ~VtI~N~C~~~C~~ 105 (167)
.++|+|+|+-.|+.
T Consensus 15 ~ieiT~~CNlrC~~ 28 (327)
T d1tv8a_ 15 RLSVTDRCNFRCDY 28 (327)
T ss_dssp EEECCSCCSCCCTT
T ss_pred EEEeccccCCcCcC
Confidence 49999999888886
No 7
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.17 E-value=1.7e+02 Score=18.30 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=25.3
Q ss_pred ccCCCCCCCCeeEEeeecCCCCCCcceEEE
Q 031006 64 RWGERCTKEDIVITQGPTGIMPNGIPTYTV 93 (167)
Q Consensus 64 ~~~~~Cs~sDIsVsQ~~TG~~v~G~Pey~V 93 (167)
.....|........|.++...-.+...|-+
T Consensus 24 ~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~ 53 (72)
T d1twfi2 24 RECPKCHSRENVFFQSQQRRKDTSMVLFFV 53 (72)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEE
T ss_pred CCCCCCCCCeEEEEEeecCccCCCceEEEE
Confidence 466779999999999999876678888877
No 8
>d1exta3 g.24.1.1 (A:116-172) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.74 E-value=1.3e+02 Score=18.59 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=23.7
Q ss_pred ccCCccceeEEEEcCCcccce-eeCCcceeeecCCceE
Q 031006 99 CETGCNISEIHLNCGWFSSAH-LINHKILKRLSYNDCL 135 (167)
Q Consensus 99 C~~~C~~s~V~L~CgGF~Sa~-~VDP~ifrrl~~d~CL 135 (167)
| +.|.-.-|++.|.++|.++ .-.+..|- .++.|+
T Consensus 2 C-SlC~NGTV~ipC~e~q~TvC~ch~gFfl--~~~eCv 36 (57)
T d1exta3 2 C-SLCLNGTVHLSCQEKQNTVCTCHAGFFL--RENECV 36 (57)
T ss_dssp C-CCCTTEEEEECCBTTBCCEEEECTTEEE--ETTEEE
T ss_pred C-ccccCCeEEeccccccCceeecccccee--cCCceE
Confidence 6 5799999999999998654 33445554 355554
No 9
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.81 E-value=1.2e+02 Score=17.66 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.2
Q ss_pred eEecCCcccCCCCeEEEEEecCCcccccc
Q 031006 134 CLVNEGKPLVSGGTLKFQYANTFLYPLTV 162 (167)
Q Consensus 134 CLVN~G~PI~~g~~VsF~YAw~~~f~L~~ 162 (167)
..+....++..|++|.|....+..+-|.+
T Consensus 35 ~~~~~~~~~~~g~~i~l~~d~~~~~lFD~ 63 (70)
T d1v43a2 35 VKLPGHIPIEPGREVKVIMDLDMIHVFDK 63 (70)
T ss_dssp EEEESCCCCCTTCEEEEEEEGGGCEEEET
T ss_pred EEECCCCCCCCCCEEEEEECcccEEEEcc
Confidence 44566668888999999999888887776
No 10
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.74 E-value=61 Score=23.21 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCCCCcceEEEEEEcCccCCccceeEEEEcCCcccceeeCCcceee
Q 031006 83 IMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKR 128 (167)
Q Consensus 83 ~~v~G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrr 128 (167)
+.++.+.||.|.|..+ .+++-+=.-|+|..+|||+.-+.
T Consensus 2 ~~~~~v~Ey~vrv~k~-------~~kky~vmrF~s~~~VD~~~~~p 40 (149)
T d1f3ub_ 2 PSSQNVTEYVVRVPKN-------TTKKYNIMAFNAADKVNFATWNQ 40 (149)
T ss_dssp CSCCEEEEEEEECCSC-------CSEEEEEEEECGGGCCCGGGCSC
T ss_pred CCCCCcEEEEEEecCC-------CCceEEEEEecCCCCCChhhCcc
Confidence 4457899999988764 35677778899999999987653
Done!