BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031007
         (167 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q74BW7|ILVD_GEOSL Dihydroxy-acid dehydratase OS=Geobacter sulfurreducens (strain ATCC
           51573 / DSM 12127 / PCA) GN=ilvD PE=3 SV=1
          Length = 553

 Score = 35.4 bits (80), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 56/144 (38%), Gaps = 37/144 (25%)

Query: 9   GKGVPSGQMLSALTGALYT---------------TFIEKDVKNFDD--FHRAILDMFNVI 51
           G GVP  QM     G   +                FIEK + +     F   I  + + I
Sbjct: 21  GTGVPQSQMDKPFIGVATSFTDLIPGHVGMRDLERFIEKGIHSGGGYAFFFGIPGVCDGI 80

Query: 52  NSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVTLSKLDNYTVITGIVT 111
           +    G HY +P+RE I D     ++ AEA R D         V L+  D        +T
Sbjct: 81  SMGHKGMHYSLPTRELIADMV---ESVAEAHRLDGL-------VLLTNCDK-------IT 123

Query: 112 PPAAMAAKKAAENVPQINIIKAIP 135
           P   MAA +   N+P I ++ A P
Sbjct: 124 PGMLMAAARL--NIPSI-VVTAGP 144


>sp|Q8T8C0|NOS_BOMMO Nitric oxide synthase OS=Bombyx mori GN=NOS PE=2 SV=1
          Length = 1209

 Score = 31.6 bits (70), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 77  ASAEAERKDAFVEFMKDTVTLSKLDNYTVITGIVTPPAAMAAKKAAENVPQINIIKAIP- 135
           A    E  DA +E MKD     K     V+   +TP  A+   +  E +P + I +    
Sbjct: 821 ACNRKEIVDAVLERMKDVDDYDKTVQLQVMKETLTPTGAIKTWEQHERLPAVTIRQIFTR 880

Query: 136 --DVIFVPSVTVLALIS 150
             D+   PS TVL  +S
Sbjct: 881 FLDITTPPSTTVLKYLS 897


>sp|P79171|AMPN_FELCA Aminopeptidase N OS=Felis catus GN=ANPEP PE=1 SV=3
          Length = 967

 Score = 31.6 bits (70), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 13  PSGQMLSALTGALYTTFIEKDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEI-EDF 71
           P  + L      L+  F E+  KN+ D  + ++D ++ IN+      Y VP  E++    
Sbjct: 718 PMKRYLKKQVTPLFNHF-ERVTKNWTDHPQTLMDQYSEINAVSTACSYGVPECEKLAATL 776

Query: 72  FAEWQASAE 80
           FA+W+ + +
Sbjct: 777 FAQWKKNPQ 785


>sp|P46307|RR3_CHLMO 30S ribosomal protein S3, chloroplastic OS=Chlamydomonas moewusii
           GN=rps3 PE=3 SV=1
          Length = 800

 Score = 31.2 bits (69), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 13/102 (12%)

Query: 2   GMMMSLMGKGVPSGQMLSALTGALYTTFIEKDVKNFDDFHRA-ILDMFNVINSALPGKHY 60
           G+ ++L  K + +   +S + G+L T+  E ++++ +    +  L + +  NS+LP K +
Sbjct: 494 GLKLNLKHK-IKTRLAISKMNGSLNTSRNEPELRSRETSQASDKLRIVDSTNSSLPQKVF 552

Query: 61  DVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVTLSKLDN 102
               R+++E+   E+       RK  F+E++KD V   + DN
Sbjct: 553 ----RKKLENISNEY-------RKMKFIEYLKDVVQKHRTDN 583


>sp|P79143|AMPN_CANFA Aminopeptidase N (Fragment) OS=Canis familiaris GN=ANPEP PE=1 SV=1
          Length = 191

 Score = 30.8 bits (68), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 13  PSGQMLSALTGALYTTFIEKDVKNFDDFHRAILDMFNVINSALPGKHYDVP-SREEIEDF 71
           P    L      L+  F EK  +N+ D  + + + +N IN+      Y VP  ++ +   
Sbjct: 69  PMKNYLRKQVTPLFNHF-EKITQNWTDHPQTLTEQYNEINAVSTACTYGVPKCKDLVSTL 127

Query: 72  FAEWQASAE 80
           FAEW+ + +
Sbjct: 128 FAEWRKNPQ 136


>sp|Q06502|RPOA_LDVC Replicase polyprotein 1ab OS=Lactate dehydrogenase elevating virus
            (strain C) GN=rep PE=3 SV=2
          Length = 3637

 Score = 30.0 bits (66), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 48   FNVINSALPGKHYDVPSREEIEDFFAEWQASAEAER 83
            FN+    L G+ YDVP  E +E      ++  EAER
Sbjct: 2149 FNITTYLLDGEEYDVPDHEPLEWTITIGESDLEAER 2184


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,916,740
Number of Sequences: 539616
Number of extensions: 2108544
Number of successful extensions: 6483
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6481
Number of HSP's gapped (non-prelim): 15
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)