Query 031007
Match_columns 167
No_of_seqs 62 out of 64
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00036 EF-hand_1: EF hand; 97.3 0.00025 5.3E-09 42.1 2.6 28 67-94 1-29 (29)
2 cd00051 EFh EF-hand, calcium b 96.3 0.012 2.5E-07 36.1 5.1 56 24-91 4-62 (63)
3 cd05029 S-100A6 S-100A6: S-100 96.1 0.031 6.7E-07 40.5 7.0 63 24-95 14-81 (88)
4 PF13405 EF-hand_6: EF-hand do 95.7 0.011 2.4E-07 34.5 2.7 27 67-93 1-28 (31)
5 PF13833 EF-hand_8: EF-hand do 95.5 0.044 9.6E-07 35.0 5.1 50 33-93 3-53 (54)
6 PF13202 EF-hand_5: EF hand; P 95.1 0.019 4.1E-07 32.7 2.2 24 68-91 1-25 (25)
7 PTZ00183 centrin; Provisional 94.9 0.11 2.4E-06 38.7 6.5 62 21-93 54-118 (158)
8 cd05030 calgranulins Calgranul 94.7 0.2 4.3E-06 35.9 7.0 67 22-95 10-81 (88)
9 cd05024 S-100A10 S-100A10: A s 94.2 0.12 2.7E-06 38.4 5.3 65 24-95 12-78 (91)
10 smart00054 EFh EF-hand, calciu 94.1 0.045 9.7E-07 28.6 2.0 27 67-93 1-28 (29)
11 PF13499 EF-hand_7: EF-hand do 94.0 0.023 5E-07 37.4 0.9 50 34-91 16-66 (66)
12 cd05023 S-100A11 S-100A11: S-1 93.9 0.11 2.3E-06 37.8 4.3 67 23-96 12-83 (89)
13 cd05026 S-100Z S-100Z: S-100Z 93.7 0.14 3.1E-06 37.0 4.7 66 23-96 13-84 (93)
14 PTZ00184 calmodulin; Provision 93.7 0.15 3.3E-06 37.3 4.8 60 23-93 50-112 (149)
15 COG5126 FRQ1 Ca2+-binding prot 93.6 0.26 5.6E-06 40.1 6.5 50 33-93 70-120 (160)
16 PF14788 EF-hand_10: EF hand; 93.4 0.099 2.1E-06 35.3 3.1 32 64-95 19-51 (51)
17 cd05027 S-100B S-100B: S-100B 93.3 0.16 3.5E-06 36.7 4.3 66 22-94 10-80 (88)
18 cd05022 S-100A13 S-100A13: S-1 92.7 0.24 5.2E-06 36.1 4.6 62 24-96 12-78 (89)
19 cd05025 S-100A1 S-100A1: S-100 92.4 0.19 4.1E-06 35.8 3.6 68 22-96 11-83 (92)
20 PF13499 EF-hand_7: EF-hand do 92.0 0.15 3.3E-06 33.4 2.6 30 67-96 1-31 (66)
21 smart00027 EH Eps15 homology d 92.0 0.57 1.2E-05 33.5 5.8 50 33-96 25-75 (96)
22 PF12174 RST: RCD1-SRO-TAF4 (R 91.8 0.19 4.1E-06 35.6 3.0 34 61-96 23-56 (70)
23 KOG0034 Ca2+/calmodulin-depend 91.3 0.4 8.8E-06 39.6 4.9 34 63-96 101-135 (187)
24 KOG0027 Calmodulin and related 91.1 0.41 8.9E-06 36.9 4.5 55 34-95 60-115 (151)
25 cd00213 S-100 S-100: S-100 dom 90.9 0.59 1.3E-05 32.6 4.8 56 34-96 26-82 (88)
26 KOG0027 Calmodulin and related 90.4 0.55 1.2E-05 36.2 4.7 44 49-96 31-75 (151)
27 PF14658 EF-hand_9: EF-hand do 89.0 0.52 1.1E-05 33.3 3.2 48 44-95 17-66 (66)
28 cd05031 S-100A10_like S-100A10 88.3 0.68 1.5E-05 33.1 3.5 63 24-94 12-80 (94)
29 PTZ00184 calmodulin; Provision 86.9 3.4 7.3E-05 30.0 6.7 50 33-94 26-76 (149)
30 PTZ00183 centrin; Provisional 85.1 0.78 1.7E-05 34.1 2.5 33 60-92 11-44 (158)
31 PLN02964 phosphatidylserine de 84.3 2 4.4E-05 41.8 5.5 62 21-94 180-244 (644)
32 cd00052 EH Eps15 homology doma 84.1 1.7 3.6E-05 28.0 3.5 57 24-94 3-62 (67)
33 cd00051 EFh EF-hand, calcium b 82.7 1.2 2.7E-05 26.7 2.3 27 68-94 2-29 (63)
34 PF09279 EF-hand_like: Phospho 81.7 1.5 3.3E-05 30.4 2.7 30 67-96 1-30 (83)
35 smart00027 EH Eps15 homology d 81.1 1.3 2.9E-05 31.6 2.3 32 62-93 6-38 (96)
36 KOG0044 Ca2+ sensor (EF-Hand s 80.0 3.2 6.9E-05 34.6 4.5 67 18-96 62-131 (193)
37 KOG0028 Ca2+-binding protein ( 79.6 1.9 4.2E-05 35.7 3.0 27 66-92 142-169 (172)
38 PF09279 EF-hand_like: Phospho 78.2 8.3 0.00018 26.6 5.6 60 23-92 3-68 (83)
39 KOG0034 Ca2+/calmodulin-depend 77.9 3.1 6.8E-05 34.4 3.8 52 34-94 120-176 (187)
40 KOG0044 Ca2+ sensor (EF-Hand s 77.6 3.2 6.9E-05 34.7 3.8 83 6-93 91-175 (193)
41 cd00213 S-100 S-100: S-100 dom 77.5 2.8 6.1E-05 29.1 3.0 29 65-93 7-38 (88)
42 cd00252 SPARC_EC SPARC_EC; ext 76.5 2.8 6.1E-05 32.0 3.0 29 63-91 77-106 (116)
43 cd00052 EH Eps15 homology doma 75.8 2.7 5.8E-05 27.0 2.4 25 69-93 2-27 (67)
44 cd05026 S-100Z S-100Z: S-100Z 74.6 3.3 7.2E-05 29.8 2.8 28 66-93 10-40 (93)
45 cd00252 SPARC_EC SPARC_EC; ext 74.5 4.2 9E-05 31.1 3.4 31 61-91 43-74 (116)
46 cd05025 S-100A1 S-100A1: S-100 73.5 4 8.6E-05 28.9 3.0 28 66-93 9-39 (92)
47 PF07603 DUF1566: Protein of u 72.9 4.5 9.8E-05 29.6 3.2 32 45-77 37-68 (124)
48 COG5126 FRQ1 Ca2+-binding prot 72.7 3.3 7.2E-05 33.7 2.6 30 64-93 126-156 (160)
49 PF12763 EF-hand_4: Cytoskelet 71.7 4.6 9.9E-05 30.3 3.0 48 20-68 43-99 (104)
50 cd05022 S-100A13 S-100A13: S-1 69.9 4.8 0.0001 29.3 2.7 29 65-93 7-37 (89)
51 cd05027 S-100B S-100B: S-100B 69.3 4.8 0.00011 28.9 2.6 28 66-93 8-38 (88)
52 PF10437 Lip_prot_lig_C: Bacte 62.2 13 0.00028 26.1 3.7 41 48-91 44-86 (86)
53 cd05031 S-100A10_like S-100A10 60.8 9.1 0.0002 27.2 2.7 29 65-93 7-38 (94)
54 cd06890 PX_Bem1p The phosphoin 55.4 24 0.00052 26.4 4.3 64 35-107 36-106 (112)
55 PLN02964 phosphatidylserine de 55.0 12 0.00027 36.5 3.3 33 62-94 172-208 (644)
56 PF15079 DUF4546: Domain of un 51.6 20 0.00044 30.1 3.6 12 85-96 85-96 (205)
57 PF09068 EF-hand_2: EF hand; 50.6 18 0.00039 28.0 3.0 54 33-87 58-119 (127)
58 PF04777 Evr1_Alr: Erv1 / Alr 49.9 56 0.0012 23.2 5.4 41 25-65 45-89 (95)
59 PRK12309 transaldolase/EF-hand 48.9 25 0.00054 32.2 4.1 27 62-88 330-357 (391)
60 cd06880 PX_SNX22 The phosphoin 48.7 38 0.00082 25.2 4.4 50 34-97 39-88 (110)
61 PF14747 DUF4473: Domain of un 47.3 79 0.0017 22.5 5.8 34 42-78 26-59 (82)
62 PF01023 S_100: S-100/ICaBP ty 47.3 24 0.00051 22.6 2.7 31 66-96 6-39 (44)
63 PF12763 EF-hand_4: Cytoskelet 46.2 23 0.00049 26.6 2.9 28 65-92 42-70 (104)
64 TIGR02493 PFLA pyruvate format 45.3 21 0.00045 28.9 2.7 24 52-75 209-232 (235)
65 PHA02030 hypothetical protein 44.1 16 0.00035 33.0 2.1 37 60-97 202-238 (336)
66 PTZ00211 ribonucleoside-diphos 43.0 1.9E+02 0.004 25.5 8.5 94 35-138 104-207 (330)
67 smart00576 BTP Bromodomain tra 42.7 42 0.00091 23.4 3.6 39 38-76 1-40 (77)
68 PF13929 mRNA_stabil: mRNA sta 40.9 50 0.0011 29.5 4.6 48 40-94 71-122 (292)
69 KOG0028 Ca2+-binding protein ( 40.7 28 0.00061 28.9 2.8 29 64-92 104-133 (172)
70 PLN02952 phosphoinositide phos 39.6 58 0.0013 31.7 5.2 53 34-96 16-68 (599)
71 cd06870 PX_CISK The phosphoino 39.4 43 0.00094 24.6 3.5 51 36-96 42-92 (109)
72 KOG2299 Ribonuclease HI [Repli 38.7 80 0.0017 28.3 5.5 111 46-160 78-195 (301)
73 KOG1265 Phospholipase C [Lipid 38.7 47 0.001 34.4 4.5 52 34-96 199-252 (1189)
74 TIGR03157 cas_Csc2 CRISPR-asso 37.8 91 0.002 27.8 5.7 56 18-74 218-279 (282)
75 TIGR02831 spo_II_M stage II sp 36.8 2E+02 0.0044 23.6 7.4 40 125-164 117-159 (200)
76 PF08708 PriCT_1: Primase C te 36.7 1.3E+02 0.0028 20.1 6.3 37 33-73 27-63 (71)
77 PRK02999 malate synthase G; Pr 36.5 66 0.0014 32.1 5.1 66 23-94 13-88 (726)
78 cd08768 Cdc6_C Winged-helix do 36.5 76 0.0016 21.6 4.2 16 81-96 43-58 (87)
79 cd05029 S-100A6 S-100A6: S-100 35.3 1.6E+02 0.0036 20.9 7.2 70 39-108 4-76 (88)
80 PF07960 CBP4: CBP4; InterPro 35.3 39 0.00085 26.8 2.8 51 58-108 26-80 (128)
81 PF12630 Pox_polyA_pol_N: Poxv 34.9 57 0.0012 25.3 3.5 46 47-96 5-52 (108)
82 PF06720 Phi-29_GP16_7: Bacter 34.9 40 0.00086 26.6 2.7 43 14-57 46-88 (130)
83 cd05023 S-100A11 S-100A11: S-1 34.0 1.8E+02 0.0038 20.8 6.9 71 39-109 3-78 (89)
84 KOG0041 Predicted Ca2+-binding 34.0 1.3E+02 0.0028 26.2 5.9 33 64-96 133-166 (244)
85 PF06996 DUF1305: Protein of u 33.5 81 0.0018 27.3 4.7 68 5-73 68-140 (303)
86 PF09688 Wx5_PLAF3D7: Protein 33.2 86 0.0019 25.3 4.5 49 41-93 95-143 (147)
87 COG1393 ArsC Arsenate reductas 33.0 43 0.00093 25.5 2.6 18 61-78 36-53 (117)
88 PF03979 Sigma70_r1_1: Sigma-7 32.9 43 0.00094 23.6 2.5 28 48-78 24-51 (82)
89 KOG3922 Sulfotransferases [Pos 32.6 1.7E+02 0.0036 27.0 6.6 50 36-92 271-326 (361)
90 PF11014 DUF2852: Protein of u 32.5 64 0.0014 25.2 3.5 23 71-93 89-112 (115)
91 KOG0417 Ubiquitin-protein liga 32.5 1.3E+02 0.0028 24.5 5.4 44 45-96 100-143 (148)
92 COG3853 TelA Uncharacterized p 32.1 1.4E+02 0.003 27.8 6.1 71 4-78 61-142 (386)
93 PF13608 Potyvirid-P3: Protein 31.9 41 0.00088 31.3 2.7 25 68-93 291-316 (445)
94 PF10281 Ish1: Putative stress 31.8 96 0.0021 18.8 3.6 34 61-94 2-37 (38)
95 PTZ00127 cytochrome c oxidase 31.7 2.1E+02 0.0047 26.1 7.3 56 60-121 104-170 (403)
96 PLN02230 phosphoinositide phos 31.4 46 0.00099 32.4 3.1 38 59-96 22-59 (598)
97 TIGR01345 malate_syn_G malate 31.0 86 0.0019 31.3 4.8 65 24-94 12-85 (721)
98 COG2975 Uncharacterized protei 30.8 25 0.00054 24.8 0.9 26 21-46 9-36 (64)
99 KOG0040 Ca2+-binding actin-bun 30.1 39 0.00085 37.0 2.5 38 56-93 2280-2324(2399)
100 cd06876 PX_MDM1p The phosphoin 29.8 54 0.0012 25.0 2.7 55 34-96 63-117 (133)
101 PF04882 Peroxin-3: Peroxin-3; 29.8 30 0.00065 31.8 1.5 45 7-53 227-274 (432)
102 PF03997 VPS28: VPS28 protein; 29.7 3.2E+02 0.007 22.7 7.5 60 34-94 115-176 (188)
103 cd05030 calgranulins Calgranul 29.1 2.1E+02 0.0045 20.1 7.7 70 39-110 2-78 (88)
104 cd06093 PX_domain The Phox Hom 28.9 53 0.0012 22.4 2.4 53 34-96 38-90 (106)
105 TIGR02220 phg_TIGR02220 phage 28.6 2E+02 0.0043 20.7 5.3 47 46-96 3-49 (77)
106 PF06757 Ins_allergen_rp: Inse 28.3 2.1E+02 0.0046 22.8 6.0 21 44-64 73-93 (179)
107 PF09079 Cdc6_C: CDC6, C termi 27.9 1.1E+02 0.0025 21.0 3.9 35 62-96 15-51 (85)
108 PF06348 DUF1059: Protein of u 27.5 67 0.0015 21.5 2.5 40 57-96 14-55 (57)
109 PF14684 Tricorn_C1: Tricorn p 27.2 2.1E+02 0.0045 19.5 5.8 52 41-96 5-58 (70)
110 PRK12309 transaldolase/EF-hand 26.9 78 0.0017 29.1 3.6 61 35-96 327-388 (391)
111 TIGR02132 phaR_Bmeg polyhydrox 26.5 2.6E+02 0.0057 23.6 6.3 38 36-73 36-79 (189)
112 cd07979 TAF9 TATA Binding Prot 26.0 2E+02 0.0044 21.8 5.3 55 15-76 21-88 (117)
113 KOG1421 Predicted signaling-as 26.0 24 0.00051 35.6 0.1 37 6-48 867-907 (955)
114 cd03035 ArsC_Yffb Arsenate Red 25.1 1.1E+02 0.0024 22.5 3.6 15 61-75 34-48 (105)
115 PF14425 Imm3: Immunity protei 24.1 1.7E+02 0.0038 22.8 4.6 37 34-76 3-39 (117)
116 PF07393 Sec10: Exocyst comple 24.0 2.6E+02 0.0057 27.0 6.8 63 14-76 218-302 (710)
117 cd06886 PX_SNX27 The phosphoin 23.7 1.4E+02 0.0031 22.0 4.0 16 81-96 74-89 (106)
118 COG0484 DnaJ DnaJ-class molecu 23.6 83 0.0018 29.0 3.2 33 61-93 14-53 (371)
119 PF10140 YukC: WXG100 protein 23.3 42 0.00092 30.5 1.2 54 21-78 113-175 (359)
120 TIGR02494 PFLE_PFLC glycyl-rad 23.3 96 0.0021 26.1 3.3 22 54-75 270-291 (295)
121 KOG4603 TBP-1 interacting prot 23.2 1.1E+02 0.0023 26.0 3.4 61 34-96 115-184 (201)
122 PF14513 DAG_kinase_N: Diacylg 23.0 86 0.0019 24.9 2.8 15 80-94 47-61 (138)
123 COG1753 Predicted antotoxin, c 22.8 1.4E+02 0.0031 21.6 3.6 54 21-75 8-63 (74)
124 PF05552 TM_helix: Conserved T 22.7 72 0.0016 20.6 1.9 35 129-163 10-44 (53)
125 PF01388 ARID: ARID/BRIGHT DNA 22.4 2.1E+02 0.0045 19.9 4.4 42 34-75 35-87 (92)
126 PLN02228 Phosphoinositide phos 22.4 87 0.0019 30.3 3.2 38 58-96 16-53 (567)
127 PF05659 RPW8: Arabidopsis bro 22.2 3.6E+02 0.0078 21.3 6.2 59 17-77 10-77 (147)
128 PF01595 DUF21: Domain of unkn 22.0 1.5E+02 0.0032 22.7 3.9 35 44-78 140-176 (183)
129 PF08765 Mor: Mor transcriptio 21.6 1.1E+02 0.0023 22.6 2.9 33 45-77 34-72 (108)
130 KOG0041 Predicted Ca2+-binding 21.5 1E+02 0.0023 26.7 3.2 28 67-94 100-128 (244)
131 PRK13966 nrdF2 ribonucleotide- 21.3 2.3E+02 0.0049 25.1 5.4 82 46-138 108-197 (324)
132 PF12949 HeH: HeH/LEM domain; 21.1 85 0.0019 19.4 1.9 27 66-92 7-34 (35)
133 PF13022 HTH_Tnp_1_2: Helix-tu 21.1 2.6E+02 0.0056 22.6 5.1 60 33-96 9-70 (142)
134 PTZ00287 6-phosphofructokinase 20.9 45 0.00098 35.7 1.0 78 8-99 1286-1370(1419)
135 TIGR03613 RutR pyrimidine util 20.9 1.8E+02 0.0039 22.5 4.2 55 16-75 36-91 (202)
136 PF09524 Phg_2220_C: Conserved 20.7 2.5E+02 0.0055 20.0 4.6 46 47-96 1-46 (74)
137 PLN02492 ribonucleoside-diphos 20.7 5.7E+02 0.012 22.3 8.4 93 35-137 93-195 (324)
138 PRK02925 glucuronate isomerase 20.6 6E+02 0.013 24.2 8.2 50 33-83 209-266 (466)
139 KOG3555 Ca2+-binding proteogly 20.5 67 0.0014 30.0 1.9 31 60-90 244-275 (434)
140 KOG0030 Myosin essential light 20.2 3.1E+02 0.0068 22.4 5.5 34 60-93 5-39 (152)
141 TIGR01102 yscR type III secret 20.1 5.3E+02 0.012 21.9 7.1 14 132-145 126-139 (202)
142 cd06257 DnaJ DnaJ domain or J- 20.1 1.9E+02 0.0042 17.6 3.5 30 63-92 12-48 (55)
No 1
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.27 E-value=0.00025 Score=42.06 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 67 EIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 67 ~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
|++++|+.+|+| +|.++.+||.++++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 689999999999 9999999999999864
No 2
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.35 E-value=0.012 Score=36.05 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHh--hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHH
Q 031007 24 ALYTTFIE--KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFM 91 (167)
Q Consensus 24 ~vyd~f~~--k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~ 91 (167)
++|+.+-. +..++++||..++-.+. .+++.++++.+++.++.+ ++.++.++|..++
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLG------------EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhC------------CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 34553332 34689999998765432 677899999999999998 8889999998876
No 3
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.11 E-value=0.031 Score=40.46 Aligned_cols=63 Identities=13% Similarity=0.296 Sum_probs=48.7
Q ss_pred HHHHHHHh----hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhh
Q 031007 24 ALYTTFIE----KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTV 95 (167)
Q Consensus 24 ~vyd~f~~----k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v 95 (167)
.+|++|.. +..++.+||...+-..++ + | ..++.++++++++..|.+ ++.++-+||..+|.++.
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~-----l-g---~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELT-----I-G---SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHh-----c-C---CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 56788887 336889999886632111 2 2 447899999999999999 89999999999998764
No 4
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.73 E-value=0.011 Score=34.55 Aligned_cols=27 Identities=4% Similarity=0.165 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 67 EIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 67 ~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
+++++|+.||.+ ++.++.+||..++++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 578999999999 999999999999984
No 5
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.50 E-value=0.044 Score=34.98 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=39.3
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 33 DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
..++.+||+.++ .. ++-.+ +|.++++.++..+|.+ +|.++.+||.++++.
T Consensus 3 G~i~~~~~~~~l-~~-------~g~~~---~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRAL-SK-------LGIKD---LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHH-HH-------TTSSS---SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHH-HH-------hCCCC---CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 346778888776 22 22222 8999999999999999 999999999999874
No 6
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.13 E-value=0.019 Score=32.73 Aligned_cols=24 Identities=13% Similarity=0.349 Sum_probs=21.9
Q ss_pred HHHHHHHHhhc-hhhhhHHHHHHHH
Q 031007 68 IEDFFAEWQAS-AEAERKDAFVEFM 91 (167)
Q Consensus 68 v~~~~~~~d~~-~~~l~keeF~ef~ 91 (167)
|++.|+..|.| +|.++.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 67899999999 9999999999875
No 7
>PTZ00183 centrin; Provisional
Probab=94.88 E-value=0.11 Score=38.71 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=44.0
Q ss_pred hhHHHHHHHHh--hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 21 LTGALYTTFIE--KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 21 ~~g~vyd~f~~--k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
.+.+++..+-. ...++|+||+.++.... + ..+..++++++|+.+|.+ ++.++.+||..+++.
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~-------~----~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKL-------G----ERDPREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHh-------c----CCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35556655433 33588999888765322 1 124578899999999998 888999999999875
No 8
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=94.68 E-value=0.2 Score=35.91 Aligned_cols=67 Identities=9% Similarity=0.176 Sum_probs=47.2
Q ss_pred hHHHHHHHHhh----hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhh
Q 031007 22 TGALYTTFIEK----DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTV 95 (167)
Q Consensus 22 ~g~vyd~f~~k----~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v 95 (167)
+-++|.+|+.+ +.++-+||=..+-..+.. .++ .-.+.++++++++..|.+ ++.++-+||..++....
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~---~~t----~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN---FLK----KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH---hhc----cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 34677778854 368888887665432211 111 114589999999999999 89999999999998753
No 9
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.23 E-value=0.12 Score=38.36 Aligned_cols=65 Identities=9% Similarity=0.209 Sum_probs=48.6
Q ss_pred HHHHHHHh-hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhh
Q 031007 24 ALYTTFIE-KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTV 95 (167)
Q Consensus 24 ~vyd~f~~-k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v 95 (167)
.+|.+|+. +++++-.||.. -+++++|.-=-.+=+.+.|.++++.-|.| |++++.+||.-++..+.
T Consensus 12 ~~FhkYaG~~~tLsk~Elk~-------Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 12 LTFHKFAGEKNYLNRDDLQK-------LMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHcCCCCcCCHHHHHH-------HHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46677774 56788888764 45667774222333678899999999999 99999999999888754
No 10
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.05 E-value=0.045 Score=28.60 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 67 EIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 67 ~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
+++++|+.+|.+ ++.++.++|..++++
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 478899999999 889999999999875
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.01 E-value=0.023 Score=37.40 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHH
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFM 91 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~ 91 (167)
.++.+||..++-.+..... +-.+.+.++.+++.+|.+ +|.++.+||.++|
T Consensus 16 ~i~~~el~~~~~~~~~~~~--------~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 16 YISKEELRRALKHLGRDMS--------DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp EEEHHHHHHHHHHTTSHST--------HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5778888776554432221 223445677779999999 9999999999876
No 12
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=93.90 E-value=0.11 Score=37.79 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=48.7
Q ss_pred HHHHHHHHhh----hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 23 GALYTTFIEK----DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 23 g~vyd~f~~k----~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
-++|.+|+.+ ..++.+||-..+ ++.+|..-.+.-+.+++++++++.|.| +|.++-+||..+|..+..
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll-------~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFM-------NTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHH-------HHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4566676643 268888886543 444554333455778999999999999 999999999999987643
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=93.68 E-value=0.14 Score=36.98 Aligned_cols=66 Identities=6% Similarity=0.140 Sum_probs=47.8
Q ss_pred HHHHHHHHh--hh--cCChHHHHHHHHH-HHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 23 GALYTTFIE--KD--VKNFDDFHRAILD-MFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 23 g~vyd~f~~--k~--~~~f~dfy~Ail~-v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
-++|.+|.. .+ .++.+||-..+-. ..+ .+. ..++.++|++++++.|.| ++.++-+||..+|..+..
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~----~~~----~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTD----FLS----SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHH----hcc----cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 356888884 33 4899998765433 222 112 234778999999999999 999999999999987643
No 14
>PTZ00184 calmodulin; Provisional
Probab=93.65 E-value=0.15 Score=37.29 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=40.0
Q ss_pred HHHHHHHHh--hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 23 GALYTTFIE--KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 23 g~vyd~f~~--k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
.++++.+-. ...++|+||+.++...+.. .+..+.++.+|+.+|.+ ++.+++++|..+++.
T Consensus 50 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~-----------~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 50 QDMINEVDADGNGTIDFPEFLTLMARKMKD-----------TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHhcCcCCCCcCcHHHHHHHHHHhccC-----------CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 444444332 3357888887776543221 13456788889999888 788899999888875
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=93.62 E-value=0.26 Score=40.09 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=40.1
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 33 DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
+.++|++|..++ ....+ +.++.|+++++|+.||++ +|.++..|.+..++.
T Consensus 70 ~~idf~~Fl~~m----s~~~~-------~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 70 ETVDFPEFLTVM----SVKLK-------RGDKEEELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred CccCHHHHHHHH----HHHhc-------cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 578899987654 33333 678899999999999999 999998888887774
No 16
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=93.41 E-value=0.099 Score=35.28 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhh
Q 031007 64 SREEIEDFFAEWQAS-AEAERKDAFVEFMKDTV 95 (167)
Q Consensus 64 ske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v 95 (167)
+.+-...+|+++|++ +|.+..+||.+|.+.++
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~LT 51 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFYKRLT 51 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHHHHhC
Confidence 456678899999999 99999999999998764
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=93.26 E-value=0.16 Score=36.69 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=48.7
Q ss_pred hHHHHHHHH-h-hh--cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 22 TGALYTTFI-E-KD--VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 22 ~g~vyd~f~-~-k~--~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
.-.+|+.|- + ++ .++.+||.... .+++|..--..|+.++|++++++.|.| ++.++-+||.+++...
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll-------~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELI-------NNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHH-------HHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456777775 2 23 48888887766 333332223568999999999999999 8999999999888764
No 18
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.68 E-value=0.24 Score=36.12 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHh---hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCH-HHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 24 ALYTTFIE---KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSR-EEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 24 ~vyd~f~~---k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPsk-e~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
.+|..|.. +..++.+||-..+-. ++|.. -|. ++++++++..|.| ++.++.+||..+|..+..
T Consensus 12 ~~F~~fd~~~~~g~i~~~ELk~ll~~-------elg~~----ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 12 SNFHKASVKGGKESLTASEFQELLTQ-------QLPHL----LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHhCCCCCCeECHHHHHHHHHH-------Hhhhh----ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 45555554 335888888765432 24421 122 8999999999999 999999999999988654
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=92.37 E-value=0.19 Score=35.77 Aligned_cols=68 Identities=7% Similarity=0.125 Sum_probs=47.4
Q ss_pred hHHHHHHHH-h-hh--cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 22 TGALYTTFI-E-KD--VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 22 ~g~vyd~f~-~-k~--~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
.-++|+.|- . ++ .++.+||-.+.-.- +...++. .|+.++++++++.+|.+ ++.++-+||..++..+..
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~---lg~~~~~----~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTE---LSDFLDA----QKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHH---HHHHccC----CCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 345666664 3 22 38888887776321 1111221 47889999999999999 899999999999987543
No 20
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.02 E-value=0.15 Score=33.44 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 67 EIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 67 ~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
+|+++|+.+|.+ +|.++++||.++++.+..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc
Confidence 478999999999 999999999999998754
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=92.01 E-value=0.57 Score=33.53 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=39.6
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 33 DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
..++++|+..+.-. + | ++.+++++++..+|.+ ++.++.+||..++....+
T Consensus 25 G~Is~~el~~~l~~--------~-~-----~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 25 GTVTGAQAKPILLK--------S-G-----LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred CeEeHHHHHHHHHH--------c-C-----CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 35889998877532 1 1 4678999999999999 899999999999886544
No 22
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=91.77 E-value=0.19 Score=35.63 Aligned_cols=34 Identities=12% Similarity=0.318 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 61 DVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 61 dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
++-..+.|+..|++++.+ +++|+||+..+|..|.
T Consensus 23 ~~~~~~~l~~~Y~~~k~~--kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 23 PPSKMDLLQKHYEEFKKK--KISREEFVRKLRQIVG 56 (70)
T ss_pred CHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
Confidence 344578888888888876 8999999999998887
No 23
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=91.28 E-value=0.4 Score=39.63 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 63 PSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 63 Pske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
+.+++++=+|+-||.+ +|.|+|||+...+..++.
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 3445777789999999 999999999999999887
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=91.12 E-value=0.41 Score=36.87 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=40.7
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhh
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTV 95 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v 95 (167)
.++|+||-.-.......-.. ...+.++++++|+.+|.+ +|.++.+|+..+++.+-
T Consensus 60 ~I~~~eF~~l~~~~~~~~~~-------~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 60 TIDFEEFLDLMEKLGEEKTD-------EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred eEcHHHHHHHHHhhhccccc-------ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 47899986544332221111 117889999999999999 99999999999999753
No 25
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=90.91 E-value=0.59 Score=32.61 Aligned_cols=56 Identities=7% Similarity=0.147 Sum_probs=41.4
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
.++.+||-.++-. .+|...-..|+.++++++++..|.+ ++.++-++|..++....+
T Consensus 26 ~Is~~el~~~l~~-------~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 26 TLSKKELKELLET-------ELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred cCcHHHHHHHHHH-------HhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 5778887755432 1222111337899999999999999 889999999999987654
No 26
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=90.42 E-value=0.55 Score=36.17 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 49 NVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 49 n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
..+++.++. + |+.++++.++++.|.+ ++.++.+||..++.+...
T Consensus 31 ~~~lr~lg~-~---~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 31 GAVLRSLGQ-N---PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHcCC-C---CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 344555543 3 9999999999999999 999999999999997544
No 27
>PF14658 EF-hand_9: EF-hand domain
Probab=89.05 E-value=0.52 Score=33.29 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-h-hhhhHHHHHHHHHHhh
Q 031007 44 ILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-A-EAERKDAFVEFMKDTV 95 (167)
Q Consensus 44 il~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~-~~l~keeF~ef~~k~v 95 (167)
+-.+.+.++. ..|+ -|+-.+|++++++.|.+ . +.++.+.|.-.|++++
T Consensus 17 v~~l~~~Lra-~~~~---~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 17 VSDLITYLRA-VTGR---SPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred HHHHHHHHHH-HcCC---CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 3444444444 4553 68899999999999999 5 8999999999999863
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=88.26 E-value=0.68 Score=33.08 Aligned_cols=63 Identities=3% Similarity=0.167 Sum_probs=44.6
Q ss_pred HHHHHHHh--h--hcCChHHHHHHHHH-HHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 24 ALYTTFIE--K--DVKNFDDFHRAILD-MFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 24 ~vyd~f~~--k--~~~~f~dfy~Ail~-v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
++|+.|-. + ..++.+||-.++-. ..+.. | ..|+.+++++++++.|.+ ++.++.+||..++...
T Consensus 12 ~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l-----g---~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 12 LTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL-----K---NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh-----h---ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 44555643 1 36888888776543 21100 1 356788999999999999 8999999999998864
No 29
>PTZ00184 calmodulin; Provisional
Probab=86.88 E-value=3.4 Score=30.05 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=39.2
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 33 DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
..++++||..++-. ++ ..|+.++++.+++.++.+ ++.++.+||...+...
T Consensus 26 G~i~~~e~~~~l~~----~~--------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 26 GTITTKELGTVMRS----LG--------QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred CcCCHHHHHHHHHH----hC--------CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 35889999876522 11 236678999999999999 8899999999988754
No 30
>PTZ00183 centrin; Provisional
Probab=85.12 E-value=0.78 Score=34.10 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHH
Q 031007 60 YDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMK 92 (167)
Q Consensus 60 ~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~ 92 (167)
+.++..+++++.|..+|.+ ++.++.+||.++++
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~ 44 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMR 44 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Confidence 3344444455555555544 44555555555444
No 31
>PLN02964 phosphatidylserine decarboxylase
Probab=84.26 E-value=2 Score=41.81 Aligned_cols=62 Identities=10% Similarity=0.162 Sum_probs=44.9
Q ss_pred hhHHHHHHHHh--hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 21 LTGALYTTFIE--KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 21 ~~g~vyd~f~~--k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
+..++++.|-. ...++|+||-..+- . +. ..++.++++++|+.+|.| ++.++.+||.+.++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~----~----lg----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIK----A----FG----NLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHH----H----hc----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 34555554422 23588998854442 2 22 246789999999999999 9999999999999984
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=84.14 E-value=1.7 Score=27.95 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=40.4
Q ss_pred HHHHHHHh--hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 24 ALYTTFIE--KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 24 ~vyd~f~~--k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
++|+.|-. ...++.+|+-.+.-. + | + +.++++++++..+.+ ++.++.+||...+...
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~--------~-g--~---~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGK--------S-G--L---PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHH--------c-C--C---CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 34554422 235778887765432 2 2 1 678999999999999 8999999999988753
No 33
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=82.68 E-value=1.2 Score=26.71 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 68 IEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 68 v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
++++|..+|.+ ++.++.++|..+++..
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 67889999998 8889999999998864
No 34
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=81.75 E-value=1.5 Score=30.41 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 67 EIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 67 ~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
||+++|++|..+++.++.++|++|+++.=+
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~ 30 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQG 30 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhc
Confidence 688899999666778899999999987544
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=81.05 E-value=1.3 Score=31.59 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 62 VPSREEIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 62 pPske~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
....+++++.|+.+|.+ ++.++.+|+.++++.
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 33456788889999988 889999999999876
No 36
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=80.03 E-value=3.2 Score=34.64 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=46.9
Q ss_pred hhhhhHHHHHHHHh--hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 18 LSALTGALYTTFIE--KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 18 ~~~~~g~vyd~f~~--k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
++.+++.||.-|-. ...++|.||-+|+.. ...|.- -+.++=+|+-||.| +|.++|+|+.++++..
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~-------~~rGt~-----eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSL-------TSRGTL-----EEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHH-------HcCCcH-----HHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 45566666665555 345889996665433 345532 35566779999999 9999999999999975
Q ss_pred hc
Q 031007 95 VT 96 (167)
Q Consensus 95 v~ 96 (167)
-.
T Consensus 130 ~~ 131 (193)
T KOG0044|consen 130 YQ 131 (193)
T ss_pred HH
Confidence 44
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=79.56 E-value=1.9 Score=35.67 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhc-hhhhhHHHHHHHHH
Q 031007 66 EEIEDFFAEWQAS-AEAERKDAFVEFMK 92 (167)
Q Consensus 66 e~v~~~~~~~d~~-~~~l~keeF~ef~~ 92 (167)
+++++|.++.+.+ ++++..|||.++|+
T Consensus 142 ~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 142 EELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHh
Confidence 3444444444444 44444444444444
No 38
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=78.25 E-value=8.3 Score=26.61 Aligned_cols=60 Identities=10% Similarity=0.333 Sum_probs=43.8
Q ss_pred HHHHHHHHh-hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-----hhhhhHHHHHHHHH
Q 031007 23 GALYTTFIE-KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-----AEAERKDAFVEFMK 92 (167)
Q Consensus 23 g~vyd~f~~-k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-----~~~l~keeF~ef~~ 92 (167)
+.+|.+|.+ +..++.++|+. -++++-..+.. +.+++++++++|..+ .+.++.++|..|+.
T Consensus 3 ~~if~~ys~~~~~mt~~~f~~-------FL~~eQ~~~~~---~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 3 EEIFRKYSSDKEYMTAEEFRR-------FLREEQGEPRL---TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHCTTSSSEEHHHHHH-------HHHHTSS-TTS---SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCCHHHHHH-------HHHHHhccccC---cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 567888877 56688887753 35555443333 799999999998665 35788999999986
No 39
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=77.86 E-value=3.1 Score=34.38 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=39.2
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHH----HHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIED----FFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~----~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
.++.+|+-..+..++.. ..+- |.|+++. .++++|.+ +|.|+.|||.+++.+.
T Consensus 120 ~I~reel~~iv~~~~~~--------~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 120 FISREELKQILRMMVGE--------NDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred cCcHHHHHHHHHHHHcc--------CCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 48899998887776642 2222 6666655 56689999 9999999999998864
No 40
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=77.61 E-value=3.2 Score=34.66 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=57.1
Q ss_pred hhhcCCCCchhhhhhhhHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCC-HHHHHHHHHHHhhc-hhhhh
Q 031007 6 SLMGKGVPSGQMLSALTGALYTTFIEKDVKNFDDFHRAILDMFNVINSALPGKHYDVPS-REEIEDFFAEWQAS-AEAER 83 (167)
Q Consensus 6 s~~~~g~p~~~~~~~~~g~vyd~f~~k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPs-ke~v~~~~~~~d~~-~~~l~ 83 (167)
|..-+|.+.-++..+ -++||.=- +..++.+|++.-+-.+|+.... ...+ -+..+ ++-+.+.|++.|.| ++.++
T Consensus 91 s~~~rGt~eekl~w~--F~lyD~dg-dG~It~~Eml~iv~~i~~m~~~-~~~~-~~~~~~~~~v~~if~k~D~n~Dg~lT 165 (193)
T KOG0044|consen 91 SLTSRGTLEEKLKWA--FRLYDLDG-DGYITKEEMLKIVQAIYQMTGS-KALP-EDEETPEERVDKIFSKMDKNKDGKLT 165 (193)
T ss_pred HHHcCCcHHHHhhhh--heeecCCC-CceEcHHHHHHHHHHHHHHccc-ccCC-cccccHHHHHHHHHHHcCCCCCCccc
Confidence 444466654333322 56666211 3468899999988888887765 2333 24444 45577899999999 99999
Q ss_pred HHHHHHHHHH
Q 031007 84 KDAFVEFMKD 93 (167)
Q Consensus 84 keeF~ef~~k 93 (167)
.|||.+..+.
T Consensus 166 ~eef~~~~~~ 175 (193)
T KOG0044|consen 166 LEEFIEGCKA 175 (193)
T ss_pred HHHHHHHhhh
Confidence 9999998875
No 41
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=77.49 E-value=2.8 Score=29.14 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhh--c-hhhhhHHHHHHHHHH
Q 031007 65 REEIEDFFAEWQA--S-AEAERKDAFVEFMKD 93 (167)
Q Consensus 65 ke~v~~~~~~~d~--~-~~~l~keeF~ef~~k 93 (167)
.+++++.|..+|. + ++.++.+||.++++.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 5678888999999 7 888999999999875
No 42
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=76.53 E-value=2.8 Score=32.02 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHhhc-hhhhhHHHHHHHH
Q 031007 63 PSREEIEDFFAEWQAS-AEAERKDAFVEFM 91 (167)
Q Consensus 63 Pske~v~~~~~~~d~~-~~~l~keeF~ef~ 91 (167)
|....+.++++.+|.| ++.|+.+||.+++
T Consensus 77 ~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 77 PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4456666777777777 7777777777776
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=75.81 E-value=2.7 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=21.7
Q ss_pred HHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 69 EDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 69 ~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
+++|+.+|.+ ++.++.+|+.+++++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5788999999 889999999998875
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=74.58 E-value=3.3 Score=29.79 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHh-hc-hh-hhhHHHHHHHHHH
Q 031007 66 EEIEDFFAEWQ-AS-AE-AERKDAFVEFMKD 93 (167)
Q Consensus 66 e~v~~~~~~~d-~~-~~-~l~keeF~ef~~k 93 (167)
+.+.++|..|| .+ ++ .++++||.+.+++
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 45666677777 34 44 4777777777755
No 45
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=74.47 E-value=4.2 Score=31.07 Aligned_cols=31 Identities=3% Similarity=0.047 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHH
Q 031007 61 DVPSREEIEDFFAEWQAS-AEAERKDAFVEFM 91 (167)
Q Consensus 61 dpPske~v~~~~~~~d~~-~~~l~keeF~ef~ 91 (167)
.++.+++|..+|..+|.| +|.++++|...+.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 578999999999999999 9999999999774
No 46
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=73.53 E-value=4 Score=28.87 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHHHHHh-hc-hh-hhhHHHHHHHHHH
Q 031007 66 EEIEDFFAEWQ-AS-AE-AERKDAFVEFMKD 93 (167)
Q Consensus 66 e~v~~~~~~~d-~~-~~-~l~keeF~ef~~k 93 (167)
+++++.|+.|| .+ ++ .++++||..+++.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 67888999996 77 77 4999999998875
No 47
>PF07603 DUF1566: Protein of unknown function (DUF1566); InterPro: IPR011460 These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.
Probab=72.93 E-value=4.5 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhh
Q 031007 45 LDMFNVINSALPGKHYDVPSREEIEDFFAEWQA 77 (167)
Q Consensus 45 l~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~ 77 (167)
...++.+|.. +...||.|+++||+.+++.-..
T Consensus 37 ~~~c~~l~~~-G~~dWRLPt~~EL~~L~~~~~~ 68 (124)
T PF07603_consen 37 IAYCNNLNLG-GYTDWRLPTIEELQSLYDFSCT 68 (124)
T ss_pred HHHHHHHhcC-CCCCccCCCHHHHHHHHHhccC
Confidence 5667888874 6688999999999999864433
No 48
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=72.68 E-value=3.3 Score=33.68 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 64 SREEIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 64 ske~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
+-++|+++++.++.+ +|.++.++|.+.+..
T Consensus 126 ~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 126 SDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 468999999999999 999999999998753
No 49
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=71.66 E-value=4.6 Score=30.33 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHh---hhcCChHHHHHHHHHHHHHHHhh---CCC---CCCCCCCHHHH
Q 031007 20 ALTGALYTTFIE---KDVKNFDDFHRAILDMFNVINSA---LPG---KHYDVPSREEI 68 (167)
Q Consensus 20 ~~~g~vyd~f~~---k~~~~f~dfy~Ail~v~n~iNk~---lpG---~h~dpPske~v 68 (167)
-.-+++|+ .+. ...++++||.+|..+++...|.. +|. ++.-|||+..+
T Consensus 43 ~~L~~IW~-LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~~~lP~~LP~~L~p~s~~~~ 99 (104)
T PF12763_consen 43 DVLAQIWN-LADIDNDGKLDFEEFAIAMHLINRKLNGNGKPLPSSLPPSLIPPSKRPL 99 (104)
T ss_dssp HHHHHHHH-HH-SSSSSEEEHHHHHHHHHHHHHHHHHTTS---SSSSGGGSSSCG---
T ss_pred HHHHHHHh-hhcCCCCCcCCHHHHHHHHHHHHHHhcCCCCCCchhcCHHHCCCCcccc
Confidence 44567776 444 44699999999999999888763 332 46667776544
No 50
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=69.93 E-value=4.8 Score=29.25 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhh-c-hhhhhHHHHHHHHHH
Q 031007 65 REEIEDFFAEWQA-S-AEAERKDAFVEFMKD 93 (167)
Q Consensus 65 ke~v~~~~~~~d~-~-~~~l~keeF~ef~~k 93 (167)
...|.+.|+.||+ + ++.++++||...+++
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHH
Confidence 4567778888887 6 777888888888776
No 51
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=69.33 E-value=4.8 Score=28.92 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHHHHHHHHh-hc-hh-hhhHHHHHHHHHH
Q 031007 66 EEIEDFFAEWQ-AS-AE-AERKDAFVEFMKD 93 (167)
Q Consensus 66 e~v~~~~~~~d-~~-~~-~l~keeF~ef~~k 93 (167)
..+.++|+.|| ++ ++ .++.+||.+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 45666777775 45 55 3777777777765
No 52
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=62.15 E-value=13 Score=26.08 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=32.7
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc--hhhhhHHHHHHHH
Q 031007 48 FNVINSALPGKHYDVPSREEIEDFFAEWQAS--AEAERKDAFVEFM 91 (167)
Q Consensus 48 ~n~iNk~lpG~h~dpPske~v~~~~~~~d~~--~~~l~keeF~ef~ 91 (167)
.+++.+.|-|..| +++.|++.++..+.+ -+.++.+||.+++
T Consensus 44 i~~le~~L~G~~~---~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALIGCPY---DREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHTTCBS---SHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 5677788888665 489999999998776 4478999998875
No 53
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=60.78 E-value=9.1 Score=27.17 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhh-c-h-hhhhHHHHHHHHHH
Q 031007 65 REEIEDFFAEWQA-S-A-EAERKDAFVEFMKD 93 (167)
Q Consensus 65 ke~v~~~~~~~d~-~-~-~~l~keeF~ef~~k 93 (167)
.+++.++|+.+|. + + |.++++|+.++++.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 5678889999986 6 3 78999999998875
No 54
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=55.44 E-value=24 Score=26.35 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHHHHhh------CCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhchh-cchhhhhHh
Q 031007 35 KNFDDFHRAILDMFNVINSA------LPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVTLS-KLDNYTVIT 107 (167)
Q Consensus 35 ~~f~dfy~Ail~v~n~iNk~------lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~~~-~~~~~l~I~ 107 (167)
.+|.+||.++++.|..-+.. +|.. |.+- ....+.+--+.+++++.+++++++..- .+..+-.+.
T Consensus 36 ~dFy~Lh~~L~~~fp~eag~~~~~~~lP~l----P~~~-----~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~ 106 (112)
T cd06890 36 QDFYKLHIALLDLFPAEAGRNSSKRILPYL----PGPV-----TDVVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVR 106 (112)
T ss_pred HHHHHHHHHHHHhCcHhhCCCCCCCcCCCC----CCCc-----cCcchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHH
Confidence 46889999999999754322 3321 1110 001112233568889999999998853 666655543
No 55
>PLN02964 phosphatidylserine decarboxylase
Probab=55.00 E-value=12 Score=36.49 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=29.0
Q ss_pred CCCHHH---HHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 62 VPSREE---IEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 62 pPske~---v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
.|+.++ ++++++.+|.+ ++.++.+||.+++..+
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 477776 89999999999 9999999999999864
No 56
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=51.62 E-value=20 Score=30.09 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhc
Q 031007 85 DAFVEFMKDTVT 96 (167)
Q Consensus 85 eeF~ef~~k~v~ 96 (167)
.||+|+|.++-+
T Consensus 85 ~EFVEIMKeMQk 96 (205)
T PF15079_consen 85 HEFVEIMKEMQK 96 (205)
T ss_pred HHHHHHHHHHHH
Confidence 599999998754
No 57
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=50.57 E-value=18 Score=28.00 Aligned_cols=54 Identities=17% Similarity=0.371 Sum_probs=35.0
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCH------H-HHHHHHHHHhhc-hhhhhHHHH
Q 031007 33 DVKNFDDFHRAILDMFNVINSALPGKHYDVPSR------E-EIEDFFAEWQAS-AEAERKDAF 87 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPsk------e-~v~~~~~~~d~~-~~~l~keeF 87 (167)
..++..|+...+.++|+.+|+++|+.| ..|+. | -+.=++.-||.+ .|.++=-+|
T Consensus 58 ~~l~v~~l~~~L~~iy~~l~~~~p~~~-~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 58 SSLSVSQLETLLSSIYEFLNKRLPTLH-QIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHHSTTS---HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 357899999999999999999999988 65531 1 123355677877 665554333
No 58
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=49.92 E-value=56 Score=23.24 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHhh---hcCChHHHHHHHHHHHHHHHhhCCCCCC-CCCCH
Q 031007 25 LYTTFIEK---DVKNFDDFHRAILDMFNVINSALPGKHY-DVPSR 65 (167)
Q Consensus 25 vyd~f~~k---~~~~f~dfy~Ail~v~n~iNk~lpG~h~-dpPsk 65 (167)
.|-+++++ .+.+=+||-.=.+++=|..|++|+++.+ +-|.-
T Consensus 45 hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k~~~~~~~~~ 89 (95)
T PF04777_consen 45 HFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGKPIFCDDPKF 89 (95)
T ss_dssp HHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTTSTTTSGTTH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 34444443 4578899999999999999999999996 55543
No 59
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=48.92 E-value=25 Score=32.22 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHhhc-hhhhhHHHHH
Q 031007 62 VPSREEIEDFFAEWQAS-AEAERKDAFV 88 (167)
Q Consensus 62 pPske~v~~~~~~~d~~-~~~l~keeF~ 88 (167)
++.+..++.+|+-||.+ ++.++++||.
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 55677777777777777 7777777775
No 60
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=48.71 E-value=38 Score=25.19 Aligned_cols=50 Identities=10% Similarity=0.448 Sum_probs=30.0
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhch
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVTL 97 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~~ 97 (167)
.-+|.+||..+...|. +-.+ |.|.- -.++.+--+.++..+.+|++.+++.
T Consensus 39 YseF~~Lh~~L~~~~~--~p~~-------P~K~~-----~~~~~~~ie~Rr~~Le~yL~~ll~~ 88 (110)
T cd06880 39 YSEFHALHKKLKKSIK--TPDF-------PPKRV-----RNWNPKVLEQRRQGLEAYLQGLLKI 88 (110)
T ss_pred HHHHHHHHHHHHHHCC--CCCC-------CCCCc-----cCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 3458899988777654 2233 43321 1122222355788999999998773
No 61
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=47.34 E-value=79 Score=22.48 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc
Q 031007 42 RAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS 78 (167)
Q Consensus 42 ~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~ 78 (167)
..|+.|-++++...+.. -++++...+.+++|..+
T Consensus 26 dgi~~i~~~~~~~~~~~---~~~~e~~~~~~~~~~~e 59 (82)
T PF14747_consen 26 DGIVKIAEKFKSQFAKA---KGNKEAAKKFFEKYKAE 59 (82)
T ss_pred HHHHHHHHHHHhccccc---cCCHHHHHHHHHHHHHH
Confidence 46788899999988875 78999999999988766
No 62
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=47.29 E-value=24 Score=22.60 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhc---hhhhhHHHHHHHHHHhhc
Q 031007 66 EEIEDFFAEWQAS---AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 66 e~v~~~~~~~d~~---~~~l~keeF~ef~~k~v~ 96 (167)
+.|-..|.+|-.. ...++|+||.+++++...
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp 39 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKELP 39 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHHHH
Confidence 4566677777532 557889999999887543
No 63
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=46.17 E-value=23 Score=26.58 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhc-hhhhhHHHHHHHHH
Q 031007 65 REEIEDFFAEWQAS-AEAERKDAFVEFMK 92 (167)
Q Consensus 65 ke~v~~~~~~~d~~-~~~l~keeF~ef~~ 92 (167)
.+.+.++++-.|.+ +|.++++||.=-|.
T Consensus 42 ~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 42 RDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 48999999999999 99999999976655
No 64
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=45.30 E-value=21 Score=28.92 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.1
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHH
Q 031007 52 NSALPGKHYDVPSREEIEDFFAEW 75 (167)
Q Consensus 52 Nk~lpG~h~dpPske~v~~~~~~~ 75 (167)
|...++..+++|+.++++++.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T TIGR02493 209 GIEYPLEGVKPPNKEQLERAAEIF 232 (235)
T ss_pred CCcCccCCCCCCCHHHHHHHHHHH
Confidence 344456678999999999987743
No 65
>PHA02030 hypothetical protein
Probab=44.09 E-value=16 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhch
Q 031007 60 YDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVTL 97 (167)
Q Consensus 60 ~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~~ 97 (167)
|+.|++|.-..+|-+=.. ++..+|.-++|-|++-+.+
T Consensus 202 W~~ptkEtWdsl~I~Gt~-D~GKSKN~lQE~i~~A~df 238 (336)
T PHA02030 202 WDAPTKETWDALHIEGTS-DNGKSKNFLQETIRKATDF 238 (336)
T ss_pred ecCCChhhhhheeecccC-CCccchHHHHHHHHHhhcC
Confidence 566777666655542211 2235778889999987775
No 66
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=43.02 E-value=1.9e+02 Score=25.51 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=55.8
Q ss_pred CChHHHHHHHH-HHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHH--------HHHHHhhchhcchhhhh
Q 031007 35 KNFDDFHRAIL-DMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFV--------EFMKDTVTLSKLDNYTV 105 (167)
Q Consensus 35 ~~f~dfy~Ail-~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~--------ef~~k~v~~~~~~~~l~ 105 (167)
..+..+..+|. +.|..|.+.+.. ..++.+++|+.+..+....+|.+|. .+.+.++.+..+....+
T Consensus 104 ~~~q~~~E~iHs~sYs~il~tl~~------~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~~~~lv~~~~lEgi~F 177 (330)
T PTZ00211 104 YGFQIAMENIHSETYSLLIDTYIT------DEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSFAERLVAFAAVEGIFF 177 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHh
Confidence 34455555554 777777776542 2356666777666654444555553 34444555445667777
Q ss_pred HhhcchhHHHHHHHHhhccCCcc-cccccCCccc
Q 031007 106 ITGIVTPPAAMAAKKAAENVPQI-NIIKAIPDVI 138 (167)
Q Consensus 106 I~~~~aP~~A~~~Kra~e~VP~l-~~vk~vPn~v 138 (167)
-.|++.|. .+.+ .+-.||+ .+++.|--+=
T Consensus 178 ~sgF~~~~--~l~~--~g~m~g~~~~i~~I~RDE 207 (330)
T PTZ00211 178 SGSFCAIF--WLKK--RGLMPGLTFSNELISRDE 207 (330)
T ss_pred hhhHHHHH--HHHh--cCCCcchHHHHHHHHhhH
Confidence 78888877 3333 2458888 7777665543
No 67
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=42.66 E-value=42 Score=23.41 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHHHH-HHHHHhhCCCCCCCCCCHHHHHHHHHHHh
Q 031007 38 DDFHRAILDM-FNVINSALPGKHYDVPSREEIEDFFAEWQ 76 (167)
Q Consensus 38 ~dfy~Ail~v-~n~iNk~lpG~h~dpPske~v~~~~~~~d 76 (167)
++||++++.+ +-.|++.-+-....+...|.+.+++++|=
T Consensus 1 ~~~~~~ll~~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl 40 (77)
T smart00576 1 NELAFALLRIAVAQILESAGFDSFQESALETLTDILQSYI 40 (77)
T ss_pred CHHHHHHHHHHHHHHHHHcCccccCHHHHHHHHHHHHHHH
Confidence 4788888877 88888887767778888888888888773
No 68
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=40.88 E-value=50 Score=29.52 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHH---hhc-hhhhhHHHHHHHHHHh
Q 031007 40 FHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEW---QAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 40 fy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~---d~~-~~~l~keeF~ef~~k~ 94 (167)
|..+=+++|.-+|..-|+ +| .++..+..| +.. |.++++++|.+|++-.
T Consensus 71 yW~~R~~Fl~lLn~~~p~-~y------~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~ 122 (292)
T PF13929_consen 71 YWSLRLKFLKLLNIADPQ-NY------SVRRFINDYFLLKKSMGCELTKEDLISFLKLV 122 (292)
T ss_pred hHHHHHHHHHHHhhcCcc-cC------CHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 899999999999999997 44 455677765 566 8999999999999853
No 69
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=40.66 E-value=28 Score=28.89 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHhhc-hhhhhHHHHHHHHH
Q 031007 64 SREEIEDFFAEWQAS-AEAERKDAFVEFMK 92 (167)
Q Consensus 64 ske~v~~~~~~~d~~-~~~l~keeF~ef~~ 92 (167)
++++|+++|+..|.+ +|.|+..+|...+.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHH
Confidence 667777777766666 55444444443333
No 70
>PLN02952 phosphoinositide phospholipase C
Probab=39.56 E-value=58 Score=31.73 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=38.0
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
.++|++|-+ |-+.+. +.....++||+++|++|-.+++.++.++|..|+++.=+
T Consensus 16 ~l~f~~f~~--------f~~~~k--~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 16 SYNYKMFNL--------FNRKFK--ITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQD 68 (599)
T ss_pred CcCHHHHHH--------HHHHhc--cccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCC
Confidence 577877743 222222 33455789999999999766678999999999997554
No 71
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=39.45 E-value=43 Score=24.63 Aligned_cols=51 Identities=16% Similarity=0.463 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 36 NFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 36 ~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
+|.+||.. +.+..|+.....|+|.-+.. ..+.+--+.++..+.+|++.++.
T Consensus 42 eF~~L~~~-------L~~~~~~~~~~lP~K~~~~~---~~~~~~ie~Rr~~Le~fL~~ll~ 92 (109)
T cd06870 42 EFDKLYES-------LKKQFPASNLKIPGKRLFGN---NFDPDFIKQRRAGLDEFIQRLVS 92 (109)
T ss_pred HHHHHHHH-------HHHHCcccCcCCCCCccccc---CCCHHHHHHHHHHHHHHHHHHhC
Confidence 46666654 44556766666776653320 22222224578899999998876
No 72
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=38.72 E-value=80 Score=28.27 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=73.1
Q ss_pred HHHHHHHhh-----CCCCCCCCCCHHHHHHHHHHHhh-chhhhhHHHHHHHHHHhhchhcchhhhhHhhcchhHHHHHHH
Q 031007 46 DMFNVINSA-----LPGKHYDVPSREEIEDFFAEWQA-SAEAERKDAFVEFMKDTVTLSKLDNYTVITGIVTPPAAMAAK 119 (167)
Q Consensus 46 ~v~n~iNk~-----lpG~h~dpPske~v~~~~~~~d~-~~~~l~keeF~ef~~k~v~~~~~~~~l~I~~~~aP~~A~~~K 119 (167)
++||+||+. .-|+-.+.=|.++|-..+..+.+ |=.+++.+.=+.+|++....+.--..+++=.++ |+. ---.
T Consensus 78 ~lf~~i~~d~~~~~~vgwA~~~isP~~IS~~Ml~r~kynLNevshdsam~LI~~v~~~gvnvteiyVDTVG-pp~-~Yq~ 155 (301)
T KOG2299|consen 78 ELFNKIKEDEELTSNVGWATDCISPREISASMLRRNKYNLNEVSHDSAMGLIDEVLDQGVNVTEIYVDTVG-PPA-KYQE 155 (301)
T ss_pred HHHHHHhhhhhhhhceeeEeeecCHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhCCceEEEEEecCC-ChH-HHHH
Confidence 678999875 36788899999999998886633 334578888889999877655433444443433 333 3344
Q ss_pred HhhccCCcc-cccccCCccchhHHHHHHHHHHHHHHHHHhhh
Q 031007 120 KAAENVPQI-NIIKAIPDVIFVPSVTVLALISAKISRKMIQG 160 (167)
Q Consensus 120 ra~e~VP~l-~~vk~vPn~vfvp~~T~~av~~~kl~r~~~~~ 160 (167)
|--+.-||+ -.|.+=-|++| |.+. +|-+.||++|--+.|
T Consensus 156 kLek~FP~~k~tV~kKADSlf-piVS-~ASI~AKVtRD~alk 195 (301)
T KOG2299|consen 156 KLEKRFPGIKFTVTKKADSLF-PIVS-AASIVAKVTRDRALK 195 (301)
T ss_pred HHHhhCCCeEEEEeecccccc-cchh-hhhhhhhhhhccccc
Confidence 455778999 45555556655 5554 444568999984444
No 73
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=38.70 E-value=47 Score=34.39 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=37.0
Q ss_pred cCChHHH-HHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 34 VKNFDDF-HRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 34 ~~~f~df-y~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
.++-+|| +.-+..++|+||- +-+|+++|.++..+ ...+++++|++|+.+.-+
T Consensus 199 sI~~d~f~~e~f~~~l~klcp-----------R~eie~iF~ki~~~~kpylT~~ql~dfln~~Qr 252 (1189)
T KOG1265|consen 199 SIEPDDFTLEKFYRLLNKLCP-----------RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQR 252 (1189)
T ss_pred ccChhhccHHHHHHHHHhcCC-----------chhHHHHHHHhccCCCccccHHHHHHHHhhhcc
Confidence 3444444 2233356666663 34799999999888 588999999999998755
No 74
>TIGR03157 cas_Csc2 CRISPR-associated protein Csc2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc2 for CRISPR/Cas Subtype Cyano protein 2, as it is often the second gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Probab=37.83 E-value=91 Score=27.82 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHhhh------cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHH
Q 031007 18 LSALTGALYTTFIEKD------VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAE 74 (167)
Q Consensus 18 ~~~~~g~vyd~f~~k~------~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~ 74 (167)
.--++-.+||+|...+ .++.+|.-.++-++++.++++-+..|+++- -+++.+++.+
T Consensus 218 nl~~tqa~y~~l~~~~~l~l~~pL~~~~v~~~a~~~~~~l~~~~~i~~~~~~-~~~~~~ll~e 279 (282)
T TIGR03157 218 NLELTQATYDQFASGKGLDLPDPLNVDQVNAAVREAIKNLSKEGRIVTFDLL-GDEVVKLLTD 279 (282)
T ss_pred hHHHHHHHHHHHhcCCCcccCCCcCHHHHHHHHHHHHHHHHhhCceeecccc-cHHHHHHHHh
Confidence 4457889999998743 467999999999999999988887788877 4555555543
No 75
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=36.84 E-value=2e+02 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.435 Sum_probs=29.0
Q ss_pred CCcc--cccccCCccch-hHHHHHHHHHHHHHHHHHhhhhcCC
Q 031007 125 VPQI--NIIKAIPDVIF-VPSVTVLALISAKISRKMIQGTMGK 164 (167)
Q Consensus 125 VP~l--~~vk~vPn~vf-vp~~T~~av~~~kl~r~~~~~~~~~ 164 (167)
..|+ ..+.-+|--++ +|+.-++++.+.+....+.++..+|
T Consensus 117 ~~G~l~~l~~ilPq~I~~IPa~lia~~~~~~fs~~~l~~~~~k 159 (200)
T TIGR02831 117 MKGVLLAFLGVLPQNLIIIPGILIASVIAISFSLGLLRSGFNK 159 (200)
T ss_pred ccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4554 44455776555 9999999999988888888765554
No 76
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=36.72 E-value=1.3e+02 Score=20.13 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=27.4
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHH
Q 031007 33 DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFA 73 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~ 73 (167)
.+..+++||..++.+...+|... ..|=+.+||+...+
T Consensus 27 ~v~~~~~~~~~v~~~~~~~N~~~----~~PL~~~Ev~~i~k 63 (71)
T PF08708_consen 27 GVDQEEQFRQEVLSLAQAINSNF----SPPLPESEVKAIAK 63 (71)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 34444489999999999999986 34446777877665
No 77
>PRK02999 malate synthase G; Provisional
Probab=36.48 E-value=66 Score=32.11 Aligned_cols=66 Identities=18% Similarity=0.434 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhc-----CChHHHHHHHHHHHHHH---HhhCCCCCCCCCCHHHHHHHHHHHhhc--hhhhhHHHHHHHHH
Q 031007 23 GALYTTFIEKDV-----KNFDDFHRAILDMFNVI---NSALPGKHYDVPSREEIEDFFAEWQAS--AEAERKDAFVEFMK 92 (167)
Q Consensus 23 g~vyd~f~~k~~-----~~f~dfy~Ail~v~n~i---Nk~lpG~h~dpPske~v~~~~~~~d~~--~~~l~keeF~ef~~ 92 (167)
.+..-+|++.+. ++=++|....-.+++++ |++| .-.+|++|..++.||.+ +...+.++...|++
T Consensus 13 ~~~l~~fi~~e~lpgtgv~~~~fW~~~~~~v~~~~p~n~~l------l~~r~~lq~~id~wh~~~~g~~~d~~~y~~fl~ 86 (726)
T PRK02999 13 AAVLYDFVNNEALPGTGVDADAFWAGFAAIVHDLAPKNRAL------LAKRDELQAKIDAWHRAHPGPPHDLAAYKAFLT 86 (726)
T ss_pred cHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhCchHHHH------HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 333444888554 56788999988888886 5544 34689999999999998 55678999999999
Q ss_pred Hh
Q 031007 93 DT 94 (167)
Q Consensus 93 k~ 94 (167)
+.
T Consensus 87 ~i 88 (726)
T PRK02999 87 EI 88 (726)
T ss_pred hc
Confidence 83
No 78
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=36.47 E-value=76 Score=21.65 Aligned_cols=16 Identities=0% Similarity=0.094 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHhhc
Q 031007 81 AERKDAFVEFMKDTVT 96 (167)
Q Consensus 81 ~l~keeF~ef~~k~v~ 96 (167)
.++..+|.+++.++-.
T Consensus 43 ~l~~~~~~~~l~~L~~ 58 (87)
T cd08768 43 PLTQRRISDLLSELEM 58 (87)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4555566666665543
No 79
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=35.34 E-value=1.6e+02 Score=20.89 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhCC-CCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc--hhcchhhhhHhh
Q 031007 39 DFHRAILDMFNVINSALP-GKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT--LSKLDNYTVITG 108 (167)
Q Consensus 39 dfy~Ail~v~n~iNk~lp-G~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~--~~~~~~~l~I~~ 108 (167)
++-.|+..+.+.|.+.-. ..+..-=+.+|+++++.+.-.-+...+.+|-.+++++.-. -|+++..=++..
T Consensus 4 ~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~l 76 (88)
T cd05029 4 PLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTF 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 566788888888887654 1123355778888888652112444677777777776543 356666666544
No 80
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=35.26 E-value=39 Score=26.77 Aligned_cols=51 Identities=31% Similarity=0.377 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHHHH-HHhhc---hhhhhHHHHHHHHHHhhchhcchhhhhHhh
Q 031007 58 KHYDVPSREEIEDFFA-EWQAS---AEAERKDAFVEFMKDTVTLSKLDNYTVITG 108 (167)
Q Consensus 58 ~h~dpPske~v~~~~~-~~d~~---~~~l~keeF~ef~~k~v~~~~~~~~l~I~~ 108 (167)
..|-.||-|+|-.-|. +-... +.+.+.+||.+||..+=..++-|+.+-.++
T Consensus 26 ~~y~tPTeEeL~~r~sPELrkr~~~~r~~Rq~e~~~~~~~lKe~skSdkPIW~~~ 80 (128)
T PF07960_consen 26 VKYTTPTEEELFKRYSPELRKRYLENRELRQQEFDEFMKILKETSKSDKPIWKTG 80 (128)
T ss_pred heecCCCHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceeeC
Confidence 4678999999877665 33222 445667899999986555555555555554
No 81
>PF12630 Pox_polyA_pol_N: Poxvirus poly(A) polymerase N-terminal domain; InterPro: IPR024398 This domain is found at the N terminus of the pox virus Poly(A) polymerase protein []. Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit.; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=34.91 E-value=57 Score=25.27 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchh--hhhHHHHHHHHHHhhc
Q 031007 47 MFNVINSALPGKHYDVPSREEIEDFFAEWQASAE--AERKDAFVEFMKDTVT 96 (167)
Q Consensus 47 v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~--~l~keeF~ef~~k~v~ 96 (167)
+++-|++.|+ +.||.++-..+-..+..-.. .-+++.|..+++++-+
T Consensus 5 ~~~~i~~YLg----r~ps~~~y~~Lk~q~~~I~~I~~Fnkd~Fi~LikKNk~ 52 (108)
T PF12630_consen 5 IREIIEEYLG----RNPSLEEYHMLKSQVRNIQRIINFNKDIFISLIKKNKK 52 (108)
T ss_dssp HHHHHHHHHT----S---HHHHHHHGGGHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CCCChHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4677888877 78999998865554433233 3478999999999866
No 82
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=34.89 E-value=40 Score=26.62 Aligned_cols=43 Identities=28% Similarity=0.503 Sum_probs=14.5
Q ss_pred chhhhhhhhHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhCCC
Q 031007 14 SGQMLSALTGALYTTFIEKDVKNFDDFHRAILDMFNVINSALPG 57 (167)
Q Consensus 14 ~~~~~~~~~g~vyd~f~~k~~~~f~dfy~Ail~v~n~iNk~lpG 57 (167)
..|+.+-+-+++|+|=+. ++.+...-.+|+|+.|+.=|-++|-
T Consensus 46 ~~qil~elne~i~nR~id-~t~~~s~~e~~vLDlYe~SnIrIP~ 88 (130)
T PF06720_consen 46 RTQILSELNEVIYNRSID-KTVNLSACESAVLDLYEQSNIRIPS 88 (130)
T ss_dssp -----------------S-S-SSS-HHHHHHHHHHHHTT----H
T ss_pred HHHHHHHHHHHHHhhccC-cchhHHHHHHHHHHHHHHcCCCCcH
Confidence 356677777777777555 3444455556999999998887774
No 83
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=34.04 E-value=1.8e+02 Score=20.83 Aligned_cols=71 Identities=18% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCC-CCCCCHHHHHHHHHHHhhc--hhhhhHHHHHHHHHHhhc--hhcchhhhhHhhc
Q 031007 39 DFHRAILDMFNVINSALPGKH-YDVPSREEIEDFFAEWQAS--AEAERKDAFVEFMKDTVT--LSKLDNYTVITGI 109 (167)
Q Consensus 39 dfy~Ail~v~n~iNk~lpG~h-~dpPske~v~~~~~~~d~~--~~~l~keeF~ef~~k~v~--~~~~~~~l~I~~~ 109 (167)
++-.||..+.+.|+++..--+ -..=|++|++.+++.--.+ +...+.++..+++++.=. -|.++..=++..+
T Consensus 3 ~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 3 ETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 445556666666666432212 1234666666666643222 222334455555554311 2456666565553
No 84
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=33.96 E-value=1.3e+02 Score=26.20 Aligned_cols=33 Identities=6% Similarity=0.147 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 64 SREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 64 ske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
++=-++.++++.|.| ++.++..||.=+.++.-+
T Consensus 133 THL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 133 THLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 445567777777777 777777777776666444
No 85
>PF06996 DUF1305: Protein of unknown function (DUF1305); InterPro: IPR010732 This entry consists of several hypothetical bacterial proteins of around 300 residues in length. Their function is unknown although they are associated with type VI secretion loci, suggesting a role in virulence [, ].
Probab=33.45 E-value=81 Score=27.26 Aligned_cols=68 Identities=18% Similarity=0.380 Sum_probs=43.9
Q ss_pred hhhhc-CCCCchhhhhhhhHHHHHHHHhhh--cCChHH-HH-HHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHH
Q 031007 5 MSLMG-KGVPSGQMLSALTGALYTTFIEKD--VKNFDD-FH-RAILDMFNVINSALPGKHYDVPSREEIEDFFA 73 (167)
Q Consensus 5 ~s~~~-~g~p~~~~~~~~~g~vyd~f~~k~--~~~f~d-fy-~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~ 73 (167)
.++|| -|. .+-++...++.+.++..+++ ..+|=| || +.+..+|..--|..+..+++.+..+.+.+.+.
T Consensus 68 ~~f~GL~G~-~gpLP~~ytE~~~~~~~~~d~a~~~FlDiFnhRl~~L~yraw~k~r~~~~~~~~~~d~~~~~l~ 140 (303)
T PF06996_consen 68 VNFLGLYGP-SGPLPLHYTELLLQRLRQGDHALRDFLDIFNHRLLSLFYRAWRKYRPALQFERGADDPFSRYLL 140 (303)
T ss_pred EecccCCCC-CCCCcHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCchhccCCCCCCHHHHHHH
Confidence 35566 454 56699999999999944422 133433 44 45556667777777888888877666655554
No 86
>PF09688 Wx5_PLAF3D7: Protein of unknown function (Wx5_PLAF3D7); InterPro: IPR006496 This entry represents a set of protein sequences found in Plasmodium species. An interesting feature is five perfectly conserved Trp residues.
Probab=33.24 E-value=86 Score=25.27 Aligned_cols=49 Identities=24% Similarity=0.555 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q 031007 41 HRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKD 93 (167)
Q Consensus 41 y~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k 93 (167)
+-=+=-|++.||+.|-.+++-+|.+|.+-..+=.|-.. +-+-|.+++++
T Consensus 95 ~kYLe~v~~~In~~L~n~n~s~~~kE~ii~~~l~w~~~----DF~~FL~~vk~ 143 (147)
T PF09688_consen 95 YKYLENVHNTINKKLNNPNYSLEDKEAIINFWLEWAKE----DFEVFLNIVKE 143 (147)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33334588999999999999999999888777766322 34556665553
No 87
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=33.04 E-value=43 Score=25.54 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 031007 61 DVPSREEIEDFFAEWQAS 78 (167)
Q Consensus 61 dpPske~v~~~~~~~d~~ 78 (167)
+|||+++|+++++....+
T Consensus 36 ~~~s~~eL~~~l~~~g~~ 53 (117)
T COG1393 36 TPPSREELKKILSKLGDG 53 (117)
T ss_pred CCCCHHHHHHHHHHcCcc
Confidence 499999999999887644
No 88
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=32.87 E-value=43 Score=23.62 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=16.5
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc
Q 031007 48 FNVINSALPGKHYDVPSREEIEDFFAEWQAS 78 (167)
Q Consensus 48 ~n~iNk~lpG~h~dpPske~v~~~~~~~d~~ 78 (167)
|+.||..||...+ +.++|..+|......
T Consensus 24 ~~eI~~~L~~~~~---~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 24 YDEINDALPEDDL---DPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHH-S-S------HHHHHHHHHHHHTT
T ss_pred HHHHHHHcCccCC---CHHHHHHHHHHHHHC
Confidence 5567999996554 348888888766543
No 89
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=32.60 E-value=1.7e+02 Score=26.96 Aligned_cols=50 Identities=14% Similarity=0.418 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHhhCC----CCCCCCCCHHHHHHHHHH--HhhchhhhhHHHHHHHHH
Q 031007 36 NFDDFHRAILDMFNVINSALP----GKHYDVPSREEIEDFFAE--WQASAEAERKDAFVEFMK 92 (167)
Q Consensus 36 ~f~dfy~Ail~v~n~iNk~lp----G~h~dpPske~v~~~~~~--~d~~~~~l~keeF~ef~~ 92 (167)
....|...++++|.+ +.... -....|||.+.|+.++++ |+-+ -||.+|.+
T Consensus 271 ~lPrfFkGv~~iY~~-~~~~~hlr~t~~k~pPs~etvk~i~r~~~~~mE------~efY~f~~ 326 (361)
T KOG3922|consen 271 YLPRFFKGVREIYAT-SAKKSHLRVTNKKKPPSSETVKDIQRRMIYKME------NEFYDFAR 326 (361)
T ss_pred HhHHHHHHHHHHHhh-hhhhhceeeecccCCCCHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 467899999999995 33322 246789999999998884 4332 36777775
No 90
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=32.55 E-value=64 Score=25.17 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=12.0
Q ss_pred HHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 71 FFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 71 ~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
.|+.|-.. -...||+||-.||.+
T Consensus 89 eF~~Fl~rLR~AKDk~EFD~FM~~ 112 (115)
T PF11014_consen 89 EFEDFLERLRRAKDKEEFDQFMAE 112 (115)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHh
Confidence 44444444 344456666666654
No 91
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.52 E-value=1.3e+02 Score=24.49 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=35.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 45 LDMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 45 l~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
-.|+..|++-|-.+..|-|=..++.+.|+. +|++|.+..|+++.
T Consensus 100 ~~VllsI~sLL~~PnpddPL~~~ia~~~k~--------d~~~~~~~ARewt~ 143 (148)
T KOG0417|consen 100 SKVLLSICSLLSDPNPDDPLVPDIAELYKT--------DRAKYERTAREWTR 143 (148)
T ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHHHh--------hHHHHHHHHHHHHH
Confidence 346667777788889999999999999886 67888888888776
No 92
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=32.13 E-value=1.4e+02 Score=27.80 Aligned_cols=71 Identities=14% Similarity=0.316 Sum_probs=51.9
Q ss_pred hhhhhcCCCCchhhhhhhhHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhCCCCCCC--C---------CCHHHHHHHH
Q 031007 4 MMSLMGKGVPSGQMLSALTGALYTTFIEKDVKNFDDFHRAILDMFNVINSALPGKHYD--V---------PSREEIEDFF 72 (167)
Q Consensus 4 ~~s~~~~g~p~~~~~~~~~g~vyd~f~~k~~~~f~dfy~Ail~v~n~iNk~lpG~h~d--p---------Pske~v~~~~ 72 (167)
..|++++|.|+..=++.+++++-++-- ..+.+|.+.-+.+.-...++.-|. +.+ + ++++-|++.|
T Consensus 61 ~~sil~fG~~aq~~~~~~s~~mL~~vk---~~~vgd~g~~l~~l~~~l~~~d~d-~l~~~~~~f~~Kif~r~~~siqe~~ 136 (386)
T COG3853 61 QQSLLDFGAEAQEKAAAFSNRMLNEVK---ITDVGDLGKMLEQLMFILKRFDPD-ELPSDKKGFLTKIFGRSKSSIQEIF 136 (386)
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHhc---ccccchHHHHHHHHHHHHhhcCCc-ccccccchHHHHHHhhhhhHHHHHH
Confidence 468899999998888999999888644 445667777666666666666664 222 2 4678999999
Q ss_pred HHHhhc
Q 031007 73 AEWQAS 78 (167)
Q Consensus 73 ~~~d~~ 78 (167)
.+|..-
T Consensus 137 ~kYQt~ 142 (386)
T COG3853 137 SKYQTI 142 (386)
T ss_pred HHHHHH
Confidence 999765
No 93
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=31.90 E-value=41 Score=31.33 Aligned_cols=25 Identities=16% Similarity=0.486 Sum_probs=14.3
Q ss_pred HHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 68 IEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 68 v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
|+.+| .+... ++.-+.|||.|++++
T Consensus 291 i~~ly-~~~~~~~~~pt~eEF~e~v~~ 316 (445)
T PF13608_consen 291 IEHLY-MLCKKHGKLPTEEEFLEYVEE 316 (445)
T ss_pred HHHHH-HHHHHhCCCCCHHHHHHHHHh
Confidence 44455 44444 556666677777664
No 94
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=31.76 E-value=96 Score=18.81 Aligned_cols=34 Identities=12% Similarity=0.320 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHhhc-hhhh-hHHHHHHHHHHh
Q 031007 61 DVPSREEIEDFFAEWQAS-AEAE-RKDAFVEFMKDT 94 (167)
Q Consensus 61 dpPske~v~~~~~~~d~~-~~~l-~keeF~ef~~k~ 94 (167)
+.=|.++|++-++.|... ++.. +|+|-.+.++++
T Consensus 2 dtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKKN 37 (38)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence 334678999999999888 5555 899999888864
No 95
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=31.73 E-value=2.1e+02 Score=26.12 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHhhchh------hhhHHHH-----HHHHHHhhchhcchhhhhHhhcchhHHHHHHHHh
Q 031007 60 YDVPSREEIEDFFAEWQASAE------AERKDAF-----VEFMKDTVTLSKLDNYTVITGIVTPPAAMAAKKA 121 (167)
Q Consensus 60 ~dpPske~v~~~~~~~d~~~~------~l~keeF-----~ef~~k~v~~~~~~~~l~I~~~~aP~~A~~~Kra 121 (167)
+-||+.++.++.|++|+.-.+ ..+-|+| .|++-.++. . ++-..+.+|.+....|+.
T Consensus 104 ~~P~~~~~w~~~f~~yk~~pey~~~~~~~~l~~fk~i~~~E~~HRllg-----~-~lGl~~l~~l~~~~~~~~ 170 (403)
T PTZ00127 104 KPPITQEEWEKEFDKYKQFPEYKQVHYGMTLEEFKKIFFWEWLHRMLG-----R-SIGLFFGLPLLYFAAKGY 170 (403)
T ss_pred ECCCCHHHHHHHHHHhccCchHhhhcCCCCHHHhhhHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHhcc
Confidence 347789999999998877632 2355664 444444433 1 111222257666666664
No 96
>PLN02230 phosphoinositide phospholipase C 4
Probab=31.42 E-value=46 Score=32.42 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 59 HYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 59 h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
....+.+.||+++|++|..+++.++.++|++|+++.=+
T Consensus 22 ~~~~~p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~ 59 (598)
T PLN02230 22 MTESGPVADVRDLFEKYADGDAHMSPEQLQKLMAEEGG 59 (598)
T ss_pred cccCCCcHHHHHHHHHHhCCCCccCHHHHHHHHHHhCC
Confidence 44556778999999999655678999999999998653
No 97
>TIGR01345 malate_syn_G malate synthase G. This model describes the G isozyme of malate synthase. Isocitrate synthase and malate synthase form the glyoxylate shunt, which generates additional TCA cycle intermediates.
Probab=31.05 E-value=86 Score=31.35 Aligned_cols=65 Identities=23% Similarity=0.472 Sum_probs=49.8
Q ss_pred HHHHHHHhhhc-----CChHHHHHHHHHHHHHH---HhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 24 ALYTTFIEKDV-----KNFDDFHRAILDMFNVI---NSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 24 ~vyd~f~~k~~-----~~f~dfy~Ail~v~n~i---Nk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
+...+|++.++ ++=++|....-.+++++ |++| .-.+|++|..++.||.+ .+..+.++...|+++.
T Consensus 12 ~~l~~fv~~e~lpgtgi~~~~fw~~~~~~~~~~~p~n~~l------l~~r~~lq~~id~wh~~~~~~~d~~~y~~fl~~i 85 (721)
T TIGR01345 12 ANLKRFVDEEVLPGTGLDAAAFWSGFDEIVHDLAPENRQL------LAERDEIQAAIDEWHRSNPGPIDKAAYKSFLREI 85 (721)
T ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhCchHHHH------HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhc
Confidence 33344887554 55789999988888886 5544 34689999999999998 4448999999999983
No 98
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.85 E-value=25 Score=24.76 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=20.3
Q ss_pred hhHHHHHHHHh--hhcCChHHHHHHHHH
Q 031007 21 LTGALYTTFIE--KDVKNFDDFHRAILD 46 (167)
Q Consensus 21 ~~g~vyd~f~~--k~~~~f~dfy~Ail~ 46 (167)
+-+++||+|-. ..+.+|-|+|.-|++
T Consensus 9 Iae~Lyd~~pdvDPktvrFtdlh~wi~e 36 (64)
T COG2975 9 IAEALYDAYPDVDPKTVRFTDLHQWICE 36 (64)
T ss_pred HHHHHHhcCCCCCcceeehhhHHHHHHh
Confidence 45788998865 446889999988876
No 99
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=30.09 E-value=39 Score=36.99 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHH------HHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 56 PGKHYDVPSREE------IEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 56 pG~h~dpPske~------v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
-+..|+.|+-|+ +++.+...|++ +|.+++++.+.||-+
T Consensus 2280 rslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2280 RSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 346799999986 99999999999 999999999999976
No 100
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=29.83 E-value=54 Score=25.01 Aligned_cols=55 Identities=15% Similarity=0.338 Sum_probs=29.9
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
.-+|.+||..+.+.|..+. .-..|++.-+-..+ -+.+--+.++.++.+|++.+++
T Consensus 63 YseF~~Lh~~L~~~~~~~~------~p~~P~K~~~~~~~--~~~~~ie~Rr~~Le~yL~~Ll~ 117 (133)
T cd06876 63 YSEFLELHKYLKKRYPGVL------KLDFPQKRKISLKY--SKTLLVEERRKALEKYLQELLK 117 (133)
T ss_pred hHHHHHHHHHHHHHCcCCC------CCCCCccccccCcc--CCHHHHHHHHHHHHHHHHHHHc
Confidence 3458888877766655431 11334443222111 0112235578888889988776
No 101
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=29.76 E-value=30 Score=31.82 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=35.8
Q ss_pred hhcCCCCchhhhhhhhHHHHHHHHh---hhcCChHHHHHHHHHHHHHHHh
Q 031007 7 LMGKGVPSGQMLSALTGALYTTFIE---KDVKNFDDFHRAILDMFNVINS 53 (167)
Q Consensus 7 ~~~~g~p~~~~~~~~~g~vyd~f~~---k~~~~f~dfy~Ail~v~n~iNk 53 (167)
++++|.+. +...+-..|-+.|-. |+.++++||+..+..|.+.||.
T Consensus 227 LL~~Gw~~--l~~~Ve~aV~~vf~~~~lkd~lsl~e~~~ll~~Ir~~ve~ 274 (432)
T PF04882_consen 227 LLNRGWKE--LIERVEEAVEEVFGSISLKDELSLEEFSELLWQIRKRVES 274 (432)
T ss_dssp HHTHHHHH--HHHHHHHHHHHHHTTS-TT-EEEHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHH--HHHHHHHHHHHHhCCCCcCcccCHHHHHHHHHHHHHHHHh
Confidence 45577755 777777777777766 7889999999999999999998
No 102
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=29.69 E-value=3.2e+02 Score=22.72 Aligned_cols=60 Identities=12% Similarity=0.273 Sum_probs=42.0
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhh-c-hhhhhHHHHHHHHHHh
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQA-S-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~-~-~~~l~keeF~ef~~k~ 94 (167)
...-+++|--+-++...+|+ +++.--|...+.+|++-+.+-+. . +++++.|+=++|.-.+
T Consensus 115 ~~a~DqLhPlL~dL~~slnr-~~~~~~dfe~r~kl~~Wl~~Ln~m~asdeL~e~q~rqllfDl 176 (188)
T PF03997_consen 115 YRAKDQLHPLLSDLMQSLNR-VTDLPPDFEGRSKLVEWLIKLNGMKASDELSEEQARQLLFDL 176 (188)
T ss_dssp --BHHHHHHHHHHHHHHHHH-CTTS-TT-CCHHHHHHHHHHHHTS-TT-B--HHHHHHHHHHH
T ss_pred chhHhhHhhHHHHHHHHHhc-cCCCCCCCccHHHHHHHHHHHhCCCcccccCHHHHHHHHHHH
Confidence 35689999999999999999 46633577899999988886654 3 7788888877776653
No 103
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=29.11 E-value=2.1e+02 Score=20.12 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhCCCC-CCCCCCHHHHHHHHHHHhhchhhhh----HHHHHHHHHHhhc--hhcchhhhhHhhcc
Q 031007 39 DFHRAILDMFNVINSALPGK-HYDVPSREEIEDFFAEWQASAEAER----KDAFVEFMKDTVT--LSKLDNYTVITGIV 110 (167)
Q Consensus 39 dfy~Ail~v~n~iNk~lpG~-h~dpPske~v~~~~~~~d~~~~~l~----keeF~ef~~k~v~--~~~~~~~l~I~~~~ 110 (167)
|+-.||..++..|+++=... +-.-=|+++++.+++.-- +..++ .++..+++++.=. -|.++..-++.++.
T Consensus 2 ~~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~--g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 2 ELEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKEL--PNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHh--hHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 56788888899998864321 345568888988887311 22233 6667777665422 35677666666544
No 104
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=28.86 E-value=53 Score=22.43 Aligned_cols=53 Identities=15% Similarity=0.436 Sum_probs=29.9
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
.-+|.+||..+...+. +..+|. .|.+.-... .+.+.-+.+++.+.+|++.++.
T Consensus 38 ysdF~~L~~~L~~~~~--~~~~p~----lP~k~~~~~----~~~~~~~~R~~~L~~yl~~l~~ 90 (106)
T cd06093 38 YSDFEELHEKLKKKFP--GVILPP----LPPKKLFGN----LDPEFIEERRKQLEQYLQSLLN 90 (106)
T ss_pred hHHHHHHHHHHHHHCC--CCccCC----CCCCccccc----CCHHHHHHHHHHHHHHHHHHhc
Confidence 3468888877777665 223332 333322221 1222335578888999988777
No 105
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=28.60 E-value=2e+02 Score=20.73 Aligned_cols=47 Identities=15% Similarity=0.381 Sum_probs=31.6
Q ss_pred HHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 46 DMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 46 ~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
+|.+-+|+. +|.+|+..++...+=+-.+|+.. -+.++|...|...++
T Consensus 3 eii~yLN~k-tg~~y~~~~k~~~~lI~aR~~eg---~~~~dfk~VId~k~~ 49 (77)
T TIGR02220 3 EIIEYLNEK-AGKSFKHTTAKHKKLIKARWNEG---YTLEDFKKVIDNKVS 49 (77)
T ss_pred HHHHHHHHh-cCcccccccHhHHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 567889995 88999998887776666666554 234566665554333
No 106
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=28.27 E-value=2.1e+02 Score=22.82 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCC
Q 031007 44 ILDMFNVINSALPGKHYDVPS 64 (167)
Q Consensus 44 il~v~n~iNk~lpG~h~dpPs 64 (167)
+...+|.||..+.=+++.||+
T Consensus 73 v~~~i~~i~~~l~~~~~~p~~ 93 (179)
T PF06757_consen 73 VYYYINQINDLLGLPPLNPTP 93 (179)
T ss_pred HHHHHHHHHHHHcCCcCCCCc
Confidence 455678888888767777763
No 107
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=27.87 E-value=1.1e+02 Score=21.04 Aligned_cols=35 Identities=9% Similarity=0.240 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHH-hhc-hhhhhHHHHHHHHHHhhc
Q 031007 62 VPSREEIEDFFAEW-QAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 62 pPske~v~~~~~~~-d~~-~~~l~keeF~ef~~k~v~ 96 (167)
+.+..+|.+.|++. +.. -+.++..+|.++++++-.
T Consensus 15 ~~~~~~vy~~Y~~lc~~~~~~pls~~r~~~~l~eL~~ 51 (85)
T PF09079_consen 15 EVTTGEVYEVYEELCESLGVDPLSYRRFSDYLSELEM 51 (85)
T ss_dssp SEEHHHHHHHHHHHHHHTTS----HHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 33444455555522 222 334556666666666533
No 108
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=27.49 E-value=67 Score=21.51 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc--hhhhhHHHHHHHHHHhhc
Q 031007 57 GKHYDVPSREEIEDFFAEWQAS--AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 57 G~h~dpPske~v~~~~~~~d~~--~~~l~keeF~ef~~k~v~ 96 (167)
+..+...|.+||-+...+|=.. +.....+++++-++..++
T Consensus 14 ~~~~~a~tedEll~~~~~Ha~~~Hg~~~~~~el~~~ir~~I~ 55 (57)
T PF06348_consen 14 GFVIRAETEDELLEAVVEHAREVHGMTEIPEELREKIRSAIK 55 (57)
T ss_pred CeEEeeCCHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHhh
Confidence 3567788999999999999666 555557899999988765
No 109
>PF14684 Tricorn_C1: Tricorn protease C1 domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=27.22 E-value=2.1e+02 Score=19.51 Aligned_cols=52 Identities=8% Similarity=0.321 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCC-CHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 41 HRAILDMFNVINSALPGKHYDVP-SREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 41 y~Ail~v~n~iNk~lpG~h~dpP-ske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
....=++++.+++. .|+|- .--+-++++++|.+- ....++++|...|.+++.
T Consensus 5 ~~~F~~~W~~~~~~----f~d~~~~gvDW~~~~~~Y~p~v~~~~~~~el~~vl~eMl~ 58 (70)
T PF14684_consen 5 RQMFDEAWRLVREN----FYDPDMHGVDWDAVYDRYRPLVPAAKTRDELYDVLNEMLG 58 (70)
T ss_dssp HHHHHHHHHHHHHH----SS-HHHHHHHHHHHHHHHHGGGGG--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCCCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33444556666665 33330 123567889999888 777789999999999887
No 110
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=26.86 E-value=78 Score=29.06 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 35 KNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 35 ~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
..++.|+..+-.+|+.+...--| +.+...-..++++|+..|.| +|.++.+||..+++...+
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG-~Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDG-FITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCC-cCcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 44677777777777776654222 22222222247899999999 999999999999986544
No 111
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=26.51 E-value=2.6e+02 Score=23.61 Aligned_cols=38 Identities=21% Similarity=0.485 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHH----HHHHhhCCC--CCCCCCCHHHHHHHHH
Q 031007 36 NFDDFHRAILDMF----NVINSALPG--KHYDVPSREEIEDFFA 73 (167)
Q Consensus 36 ~f~dfy~Ail~v~----n~iNk~lpG--~h~dpPske~v~~~~~ 73 (167)
+|...--.++..| +.+|+...+ .+...||+++|.++=+
T Consensus 36 EFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~ 79 (189)
T TIGR02132 36 EFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVAS 79 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3777777778777 777766553 4678999999987655
No 112
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=26.01 E-value=2e+02 Score=21.84 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=37.2
Q ss_pred hhhhhhhhHHHHHH----------HHh---hhcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHh
Q 031007 15 GQMLSALTGALYTT----------FIE---KDVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQ 76 (167)
Q Consensus 15 ~~~~~~~~g~vyd~----------f~~---k~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d 76 (167)
-+....+.+-.|.. |++ +++.+-+|.-.||-.-.+ +....+|++|.+.++=.+.+
T Consensus 21 ~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~-------~~f~~~p~~~~l~~~a~~~N 88 (117)
T cd07979 21 PRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD-------YSFTSPPPRDFLLELAREKN 88 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------cCCCCCCcHHHHHHHHHHhc
Confidence 34556666666652 444 567889999888776554 45557789999887766544
No 113
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=25.98 E-value=24 Score=35.57 Aligned_cols=37 Identities=38% Similarity=0.591 Sum_probs=27.7
Q ss_pred hhhcCCCCchhhhhhhhHHHHHHHHh----hhcCChHHHHHHHHHHH
Q 031007 6 SLMGKGVPSGQMLSALTGALYTTFIE----KDVKNFDDFHRAILDMF 48 (167)
Q Consensus 6 s~~~~g~p~~~~~~~~~g~vyd~f~~----k~~~~f~dfy~Ail~v~ 48 (167)
...|+|.|+-|++++. +|+- .++.+|||||+-++++=
T Consensus 867 t~rg~gspalq~l~aa------~fitavng~~t~~lddf~~~~~~ip 907 (955)
T KOG1421|consen 867 TSRGYGSPALQMLRAA------HFITAVNGHDTNTLDDFYHMLLEIP 907 (955)
T ss_pred eecccCChhHhhcchh------eeEEEecccccCcHHHHHHHHhhCC
Confidence 4567999998866553 3433 67899999999999863
No 114
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=25.10 E-value=1.1e+02 Score=22.48 Aligned_cols=15 Identities=20% Similarity=0.260 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHH
Q 031007 61 DVPSREEIEDFFAEW 75 (167)
Q Consensus 61 dpPske~v~~~~~~~ 75 (167)
+|||++++++++++.
T Consensus 34 ~p~s~~eL~~~l~~~ 48 (105)
T cd03035 34 DGLDAATLERWLAKV 48 (105)
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999998754
No 115
>PF14425 Imm3: Immunity protein Imm3
Probab=24.06 E-value=1.7e+02 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=30.5
Q ss_pred cCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHh
Q 031007 34 VKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQ 76 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d 76 (167)
.++++|+..+|-+.|++++.. + -=..+.+.+.+++|+
T Consensus 3 ~w~Y~El~e~i~E~y~e~~~~----d--~s~~eaiar~~~eye 39 (117)
T PF14425_consen 3 DWSYEELFEEINEFYDEYLNE----D--RSYSEAIARTFDEYE 39 (117)
T ss_pred cchHHHHHHHHHHHHHHHHHc----c--CCHHHHHHHHHHHHH
Confidence 478899999999999999885 2 246788899999996
No 116
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=23.97 E-value=2.6e+02 Score=27.03 Aligned_cols=63 Identities=10% Similarity=0.293 Sum_probs=42.1
Q ss_pred chhhhhhhhHHHHHH----HHh---hhcC---------ChHHHHHHHHHHHHHHHhhCCCCCCC------CCCHHHHHHH
Q 031007 14 SGQMLSALTGALYTT----FIE---KDVK---------NFDDFHRAILDMFNVINSALPGKHYD------VPSREEIEDF 71 (167)
Q Consensus 14 ~~~~~~~~~g~vyd~----f~~---k~~~---------~f~dfy~Ail~v~n~iNk~lpG~h~d------pPske~v~~~ 71 (167)
+.+++..+..+||++ |.+ .+.. .+..+|.-+..+++++++.+.+.+.+ .--.+.++.+
T Consensus 218 ~~~Vm~~fiervf~~~I~~~i~~lL~~a~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~l 297 (710)
T PF07393_consen 218 PEPVMQKFIERVFEQVIQEYIESLLEEASSISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESL 297 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHH
Confidence 557888999999996 333 1121 36677888899999999985555543 2223556667
Q ss_pred HHHHh
Q 031007 72 FAEWQ 76 (167)
Q Consensus 72 ~~~~d 76 (167)
|+.|=
T Consensus 298 F~~~l 302 (710)
T PF07393_consen 298 FEPYL 302 (710)
T ss_pred HHHHc
Confidence 77675
No 117
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=23.74 E-value=1.4e+02 Score=21.99 Aligned_cols=16 Identities=6% Similarity=0.422 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHhhc
Q 031007 81 AERKDAFVEFMKDTVT 96 (167)
Q Consensus 81 ~l~keeF~ef~~k~v~ 96 (167)
+.+|..+..|++.+..
T Consensus 74 e~Rr~~Le~fL~~l~~ 89 (106)
T cd06886 74 DARRRGLEQYLEKVCS 89 (106)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4577888888888776
No 118
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.63 E-value=83 Score=28.98 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHH----HHhhc-h--hhhhHHHHHHHHHH
Q 031007 61 DVPSREEIEDFFA----EWQAS-A--EAERKDAFVEFMKD 93 (167)
Q Consensus 61 dpPske~v~~~~~----~~d~~-~--~~l~keeF~ef~~k 93 (167)
+--|.+||+++|. +||.| + ++...|.|.|+=+.
T Consensus 14 k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eA 53 (371)
T COG0484 14 KDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEA 53 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 4468999999998 78888 3 35667788887665
No 119
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=23.31 E-value=42 Score=30.53 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=30.6
Q ss_pred hhHHHHHHHHh------hhcCChHHHHHHHHHHHH--HHHhhCCCCCCCCCCHHHHHHHH-HHHhhc
Q 031007 21 LTGALYTTFIE------KDVKNFDDFHRAILDMFN--VINSALPGKHYDVPSREEIEDFF-AEWQAS 78 (167)
Q Consensus 21 ~~g~vyd~f~~------k~~~~f~dfy~Ail~v~n--~iNk~lpG~h~dpPske~v~~~~-~~~d~~ 78 (167)
--++.+.||.. .+..+|+|+|..-+++++ .|.+.+- ...|.++|.+.+ ++|...
T Consensus 113 ~ee~fl~qyKali~~ll~~k~~Fe~ly~G~~e~~~~~~f~~~i~----~a~s~~el~~~l~e~y~~~ 175 (359)
T PF10140_consen 113 DEEDFLKQYKALIIALLDPKYSFEDLYNGSLELLKGSPFLKKIA----QAESLEELVELLEEQYQKE 175 (359)
T ss_dssp -HHHHHHHHHHHHHHHH-TT--HHHHHHS-GGG----HHHHHHH----H--SHHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHhChhhhcccCHHHHHHh----ccCCHHHHHHHHHHHHHHH
Confidence 34445555333 446889999999999988 7777654 467999999999 567655
No 120
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=23.29 E-value=96 Score=26.12 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=15.1
Q ss_pred hCCCCCCCCCCHHHHHHHHHHH
Q 031007 54 ALPGKHYDVPSREEIEDFFAEW 75 (167)
Q Consensus 54 ~lpG~h~dpPske~v~~~~~~~ 75 (167)
..|-.++..||.++++++.+..
T Consensus 270 ~~~~~~~~~p~~~~~~~~~~~~ 291 (295)
T TIGR02494 270 EYPDSEIPDPAEEQLLELKEIF 291 (295)
T ss_pred CCccCCCCCCCHHHHHHHHHHH
Confidence 3344566779999998876654
No 121
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=23.20 E-value=1.1e+02 Score=25.97 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHHHHH-------HHHh-hCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHhhc
Q 031007 34 VKNFDDFHRAILDMFN-------VINS-ALPGKHYDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 34 ~~~f~dfy~Ail~v~n-------~iNk-~lpG~h~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k~v~ 96 (167)
.++.+++..-|-++=+ .+-+ .-+-.|..|-.++++.+.|++++.. .+ +|..|.|++.+++.
T Consensus 115 ~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk--~krmf~ei~d~~~e 184 (201)
T KOG4603|consen 115 ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRK--RKRMFREIIDKLLE 184 (201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHc
Confidence 4666666655544422 1111 1234688888999999999988887 44 45599999998766
No 122
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=23.03 E-value=86 Score=24.87 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=7.8
Q ss_pred hhhhHHHHHHHHHHh
Q 031007 80 EAERKDAFVEFMKDT 94 (167)
Q Consensus 80 ~~l~keeF~ef~~k~ 94 (167)
+.|+-|.|..||+-.
T Consensus 47 ~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 47 EPIDYEGFKLFMKTY 61 (138)
T ss_dssp TEE-HHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 355555666666554
No 123
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=22.81 E-value=1.4e+02 Score=21.60 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=33.7
Q ss_pred hhHHHHHHHHh-h-hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHH
Q 031007 21 LTGALYTTFIE-K-DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEW 75 (167)
Q Consensus 21 ~~g~vyd~f~~-k-~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~ 75 (167)
+.+.||.+..+ | ...+|.|+-.-.++ =..=|-.+-+..+-.+|-+++++.-.+-
T Consensus 8 I~ddvYe~L~kmK~g~~SFSdvI~~l~~-kKr~~levl~~~~g~~s~eEvek~~~e~ 63 (74)
T COG1753 8 ISDDVYEKLVKMKRGKESFSDVIRELIE-KKRGNLEVLMRAFGTLSEEEVEKIKKEE 63 (74)
T ss_pred ecHHHHHHHHHHHcccccHHHHHHHHHH-HhhhhHHHHHHHhCCCcHHHHHHHHHHH
Confidence 46889998777 5 56789998665555 2222222222335678888888766543
No 124
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=22.67 E-value=72 Score=20.64 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=26.5
Q ss_pred cccccCCccchhHHHHHHHHHHHHHHHHHhhhhcC
Q 031007 129 NIIKAIPDVIFVPSVTVLALISAKISRKMIQGTMG 163 (167)
Q Consensus 129 ~~vk~vPn~vfvp~~T~~av~~~kl~r~~~~~~~~ 163 (167)
.++..+|+-+.+-.+.....+.+|..++...+-|.
T Consensus 10 ~ii~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~ 44 (53)
T PF05552_consen 10 QIIAYLPNIVGAILILIVGWWVAKFVRKLVRRLLE 44 (53)
T ss_dssp ---GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678898888888888888889999988887543
No 125
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=22.37 E-value=2.1e+02 Score=19.94 Aligned_cols=42 Identities=5% Similarity=0.200 Sum_probs=27.6
Q ss_pred cCChHHHHHHHHHH-----------HHHHHhhCCCCCCCCCCHHHHHHHHHHH
Q 031007 34 VKNFDDFHRAILDM-----------FNVINSALPGKHYDVPSREEIEDFFAEW 75 (167)
Q Consensus 34 ~~~f~dfy~Ail~v-----------~n~iNk~lpG~h~dpPske~v~~~~~~~ 75 (167)
.+|.=.||.+|... ...|.+.++.+.-..++-.+|++.|++|
T Consensus 35 ~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~ 87 (92)
T PF01388_consen 35 PVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKY 87 (92)
T ss_dssp E-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 46677888888753 5667777765443333357899999987
No 126
>PLN02228 Phosphoinositide phospholipase C
Probab=22.36 E-value=87 Score=30.34 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 58 KHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 58 ~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
.....+.++||.++|++|-.+ +.++.++|.+|+++.=+
T Consensus 16 ~~~~~~~~~ei~~if~~~s~~-~~~t~~~~~~FL~~~Q~ 53 (567)
T PLN02228 16 KEKTREPPVSIKRLFEAYSRN-GKMSFDELLRFVSEVQG 53 (567)
T ss_pred CcCCCCCcHHHHHHHHHhcCC-CccCHHHHHHHHHHhcC
Confidence 445566789999999999654 46999999999987543
No 127
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=22.22 E-value=3.6e+02 Score=21.30 Aligned_cols=59 Identities=25% Similarity=0.392 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHh--hhcCChHHH-------HHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhh
Q 031007 17 MLSALTGALYTTFIE--KDVKNFDDF-------HRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQA 77 (167)
Q Consensus 17 ~~~~~~g~vyd~f~~--k~~~~f~df-------y~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~ 77 (167)
.+|+.++.+++.+.+ +...+|... -..|.=++++|.+- |...|.|.+++++++.+..+.
T Consensus 10 alG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~--~~eld~~~~ee~e~L~~~L~~ 77 (147)
T PF05659_consen 10 ALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL--NVELDRPRQEEIERLKELLEK 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH--hhhcCCchhHHHHHHHHHHHH
Confidence 467788888887666 334444332 22333333333331 123344557888777665444
No 128
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=21.96 E-value=1.5e+02 Score=22.72 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhCCCC--CCCCCCHHHHHHHHHHHhhc
Q 031007 44 ILDMFNVINSALPGK--HYDVPSREEIEDFFAEWQAS 78 (167)
Q Consensus 44 il~v~n~iNk~lpG~--h~dpPske~v~~~~~~~d~~ 78 (167)
+--+.+.+.+..+.. +-+..|.||++.+.++.+.+
T Consensus 140 l~~i~~~~~~~~~~~~~~~~~~s~eel~~lv~~~~e~ 176 (183)
T PF01595_consen 140 LSFISNKILKLFGIENEEDPAVSEEELRSLVEEGEEE 176 (183)
T ss_pred HHHHHHHHHHHhCCCccccCCCCHHHHHHHHHhHHHC
Confidence 344556666655544 35678999999999988876
No 129
>PF08765 Mor: Mor transcription activator family; InterPro: IPR014875 Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N-terminal region of Mor is the dimerisation region, and the C-terminal contains a helix-turn-helix motif which binds DNA []. ; PDB: 1RR7_A.
Probab=21.63 E-value=1.1e+02 Score=22.61 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCHHHHH------HHHHHHhh
Q 031007 45 LDMFNVINSALPGKHYDVPSREEIE------DFFAEWQA 77 (167)
Q Consensus 45 l~v~n~iNk~lpG~h~dpPske~v~------~~~~~~d~ 77 (167)
.++.+.++++++|.++.+|..+.+. +++++|+.
T Consensus 34 ~~~~~~L~~~~gG~~iyiP~~~~~~~~~R~~~I~~~f~G 72 (108)
T PF08765_consen 34 EEVALKLCRYFGGQQIYIPKCDRLLRALRNREIRREFNG 72 (108)
T ss_dssp HHHHHHHHHHH-SS------SHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHCCEeEEeeCccHHHHHHHHHHHHHHhCC
Confidence 4577899999999999999976443 34555553
No 130
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=21.52 E-value=1e+02 Score=26.74 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhc-hhhhhHHHHHHHHHHh
Q 031007 67 EIEDFFAEWQAS-AEAERKDAFVEFMKDT 94 (167)
Q Consensus 67 ~v~~~~~~~d~~-~~~l~keeF~ef~~k~ 94 (167)
+.+.+|++||.+ |+-++--|.-.+|.|+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 345678899999 9999988888888775
No 131
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=21.28 E-value=2.3e+02 Score=25.06 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=49.2
Q ss_pred HHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHH-------HHHHHhhchhcchhhhhHhhcchhHHHHHH
Q 031007 46 DMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFV-------EFMKDTVTLSKLDNYTVITGIVTPPAAMAA 118 (167)
Q Consensus 46 ~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~-------ef~~k~v~~~~~~~~l~I~~~~aP~~A~~~ 118 (167)
+.|..|++.+.. | ++..++|+.++.+....+|.+|. +.+++.+...-+....+-.|+++|. .+.
T Consensus 108 esYs~il~tl~~-----~--~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~~~~~~va~~~lEgi~FysgF~~~~--~l~ 178 (324)
T PRK13966 108 KSYSQIFSTLCS-----T--AEIDDAFRWSEENRNLQRKAEIVLQYYRGDEPLKRKVASTLLESFLFYSGFYLPM--YWS 178 (324)
T ss_pred HHHHHHHHHhCC-----c--HHHHHHHHHHhcCHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHHHHHHHHHHHH--HHh
Confidence 678888888742 2 46677887766555555666765 2334444434445555667777775 333
Q ss_pred HHhhccCCcc-cccccCCccc
Q 031007 119 KKAAENVPQI-NIIKAIPDVI 138 (167)
Q Consensus 119 Kra~e~VP~l-~~vk~vPn~v 138 (167)
++ +..||+ ..++.|--+=
T Consensus 179 ~~--~km~g~~~~i~~I~RDE 197 (324)
T PRK13966 179 SR--AKLTNTADMIRLIIRDE 197 (324)
T ss_pred hc--CCCCcHHHHHHHHHHhH
Confidence 32 368888 7777665443
No 132
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=21.06 E-value=85 Score=19.43 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhc-hhhhhHHHHHHHHH
Q 031007 66 EEIEDFFAEWQAS-AEAERKDAFVEFMK 92 (167)
Q Consensus 66 e~v~~~~~~~d~~-~~~l~keeF~ef~~ 92 (167)
.+|++.+.+++.+ +..-+|.|.++.++
T Consensus 7 ~~Lk~iL~~~~I~~ps~AkKaeLv~L~~ 34 (35)
T PF12949_consen 7 AQLKRILDEHGIEFPSNAKKAELVALFN 34 (35)
T ss_dssp HHHHHHHHHHT---SSS--SHHHHHH--
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHc
Confidence 6888999999988 76677888887765
No 133
>PF13022 HTH_Tnp_1_2: Helix-turn-helix of insertion element transposase; PDB: 2AO9_I.
Probab=21.06 E-value=2.6e+02 Score=22.62 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=34.6
Q ss_pred hcCChHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhc-hhhhhH-HHHHHHHHHhhc
Q 031007 33 DVKNFDDFHRAILDMFNVINSALPGKHYDVPSREEIEDFFAEWQAS-AEAERK-DAFVEFMKDTVT 96 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~-~~~l~k-eeF~ef~~k~v~ 96 (167)
..++.++.--|-+++.|+++..-. .-+|.++|.+-.--.... -.--++ +.|+++..++..
T Consensus 9 ~~L~~~Q~kAa~ll~~ne~~~~~~----~r~T~~eiAee~Gis~~tLYrWr~~~~~Fiey~n~la~ 70 (142)
T PF13022_consen 9 AKLTLQQRKAAQLLVENELMPENG----ERRTQAEIAEEVGISRSTLYRWRQQNKAFIEYKNELAD 70 (142)
T ss_dssp TTS-HHHHHHHHHHHHHHHS----------S-HHHHHHHHTS-HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHhhhcc----ccchHHHHHHHhCCCHHHHHHHHhcCHHHHHHHHHHHH
Confidence 468999999999999999988643 567888887643211111 111122 359999887665
No 134
>PTZ00287 6-phosphofructokinase; Provisional
Probab=20.88 E-value=45 Score=35.65 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=48.2
Q ss_pred hcCCCCchhhhhh---hhHHHHHHHHh-hhcCChHHHHHHHHHHHHHHHhhCCCC-CCCCCCHHHHHH-HHHHHhhc-hh
Q 031007 8 MGKGVPSGQMLSA---LTGALYTTFIE-KDVKNFDDFHRAILDMFNVINSALPGK-HYDVPSREEIED-FFAEWQAS-AE 80 (167)
Q Consensus 8 ~~~g~p~~~~~~~---~~g~vyd~f~~-k~~~~f~dfy~Ail~v~n~iNk~lpG~-h~dpPske~v~~-~~~~~d~~-~~ 80 (167)
.|.+.|. +... +-|+-|..|.+ ++.|-.+|.|+ .||| ||.=|+.+.-.. ++.+...= +.
T Consensus 1286 ~g~~~pv--I~k~~Vdl~g~~fk~~~~~r~~W~~~d~y~------------~PGPiQ~~g~~~~~~~~tL~~e~~~y~~~ 1351 (1419)
T PTZ00287 1286 SKGDLPV--IPSAPVDLNGKAYRSLKIALQKWQMEDRFC------------NPGPIQFEGNASNYYNRILFEEQSEYFEM 1351 (1419)
T ss_pred ccCcccc--ccccccCCCCHHHHHHHHHHHhhhhcCcCC------------CCCCccccCccccCcCeeeeHhHHHHHHH
Confidence 3455564 3333 67788888877 66788888875 6887 888886642211 11111111 22
Q ss_pred hhhHHHHHHHHHHhhchhc
Q 031007 81 AERKDAFVEFMKDTVTLSK 99 (167)
Q Consensus 81 ~l~keeF~ef~~k~v~~~~ 99 (167)
...=|.|.+.+++.++||.
T Consensus 1352 l~~~~~~~~~~~~~c~fg~ 1370 (1419)
T PTZ00287 1352 LRYVECYANILKDTCRFGV 1370 (1419)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 2334789999999999764
No 135
>TIGR03613 RutR pyrimidine utilization regulatory protein R. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the TetR family of transcriptional regulators defined by the N-teminal model pfam00440 and the C-terminal model pfam08362 (YcdC-like protein, C-terminal region).
Probab=20.87 E-value=1.8e+02 Score=22.45 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=30.8
Q ss_pred hhhhhhhHHHHHHHHhhhcCChHHHHHHHHHHH-HHHHhhCCCCCCCCCCHHHHHHHHHHH
Q 031007 16 QMLSALTGALYTTFIEKDVKNFDDFHRAILDMF-NVINSALPGKHYDVPSREEIEDFFAEW 75 (167)
Q Consensus 16 ~~~~~~~g~vyd~f~~k~~~~f~dfy~Ail~v~-n~iNk~lpG~h~dpPske~v~~~~~~~ 75 (167)
+-+|+--+.+|..|-+| ++++.|+++-+ +.+.+.+-...-.-|..+.+++.+..+
T Consensus 36 ~~agvs~~~lY~hF~sK-----e~L~~av~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~ 91 (202)
T TIGR03613 36 ELAGVSKTNLLYYFPSK-----DALYLAVLRQILDIWLSPLKAFTEDFAPLAAIKAYIRAK 91 (202)
T ss_pred HHhCCCHHHHHHHcCCH-----HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 34566778889877665 45666665532 322222211111235667888877643
No 136
>PF09524 Phg_2220_C: Conserved phage C-terminus (Phg_2220_C); InterPro: IPR011741 This entry is represented by the C-terminal domain of Bacteriophage r1t, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=20.74 E-value=2.5e+02 Score=20.03 Aligned_cols=46 Identities=13% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhc
Q 031007 47 MFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFVEFMKDTVT 96 (167)
Q Consensus 47 v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~ef~~k~v~ 96 (167)
|.+-+|+. -|.+|++.++...+-+=.+++.. -+.|+|..-|...+.
T Consensus 1 II~yLN~~-tg~~f~~~~~~~~~~I~aRl~eG---~t~edf~~VID~k~~ 46 (74)
T PF09524_consen 1 IIDYLNKK-TGKKFKSNTKSTKKLIKARLNEG---YTLEDFKKVIDNKVA 46 (74)
T ss_pred CHHHHHHH-hcCccCCCcHHHHHHHHHHHHCC---CCHHHHHHHHHHHHH
Confidence 46778985 78999999988877666676554 345677766665444
No 137
>PLN02492 ribonucleoside-diphosphate reductase
Probab=20.73 E-value=5.7e+02 Score=22.32 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=53.0
Q ss_pred CChHHHHHHHH-HHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhchhhhhHHHHH--------HHHHHhhchhcchhhhh
Q 031007 35 KNFDDFHRAIL-DMFNVINSALPGKHYDVPSREEIEDFFAEWQASAEAERKDAFV--------EFMKDTVTLSKLDNYTV 105 (167)
Q Consensus 35 ~~f~dfy~Ail-~v~n~iNk~lpG~h~dpPske~v~~~~~~~d~~~~~l~keeF~--------ef~~k~v~~~~~~~~l~ 105 (167)
..+..+..+|. +.|..|++.+.. | .++.++.|+.+..+....+|.++. .+.+.++.+..+....+
T Consensus 93 ~~~q~~~E~iH~~sYs~i~~tl~~---d---~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~~lEgi~F 166 (324)
T PLN02492 93 YGFQIAIENIHSEMYSLLLDTYIK---D---PKEKDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFACVEGIFF 166 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC---C---HHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHhh
Confidence 33444445554 677777776542 2 245566676555553333444442 34444555445666677
Q ss_pred HhhcchhHHHHHHHHhhccCCcc-cccccCCcc
Q 031007 106 ITGIVTPPAAMAAKKAAENVPQI-NIIKAIPDV 137 (167)
Q Consensus 106 I~~~~aP~~A~~~Kra~e~VP~l-~~vk~vPn~ 137 (167)
-.++++|. .+.+| +-.||+ ..++.|--+
T Consensus 167 ~sgF~~~~--~l~~~--g~m~g~~~~i~~I~RD 195 (324)
T PLN02492 167 SGSFCAIF--WLKKR--GLMPGLTFSNELISRD 195 (324)
T ss_pred hhhHHHHH--HHHHc--CCCcchHHHHHHHHhh
Confidence 78888776 44443 468888 777665544
No 138
>PRK02925 glucuronate isomerase; Reviewed
Probab=20.61 E-value=6e+02 Score=24.23 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=38.6
Q ss_pred hcCChHHHHHHHHHHHHHHHhh--------CCCCCCCCCCHHHHHHHHHHHhhchhhhh
Q 031007 33 DVKNFDDFHRAILDMFNVINSA--------LPGKHYDVPSREEIEDFFAEWQASAEAER 83 (167)
Q Consensus 33 ~~~~f~dfy~Ail~v~n~iNk~--------lpG~h~dpPske~v~~~~~~~d~~~~~l~ 83 (167)
++.+|++|-.|.-.-.+.|.+. ++...|.+.|.+|++++|++--. ++.++
T Consensus 209 ~i~~~~~ll~AL~~R~~~F~~~Gc~~sDHgl~~~~~~~~~~~e~~~if~k~~~-g~~lt 266 (466)
T PRK02925 209 DITTFDGLLEALRKRRDYFAAHGCRSSDHGLDTVVTAELSEAEADAIFAKALA-GGTLT 266 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEhhcCCCccCCCCCCHHHHHHHHHHHHc-CCCCC
Confidence 6788999999988888888774 22378889999999999997743 34444
No 139
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=20.50 E-value=67 Score=29.96 Aligned_cols=31 Identities=3% Similarity=0.005 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHH
Q 031007 60 YDVPSREEIEDFFAEWQAS-AEAERKDAFVEF 90 (167)
Q Consensus 60 ~dpPske~v~~~~~~~d~~-~~~l~keeF~ef 90 (167)
+-||+|+++.=||.+||.| +..|+..|...+
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I 275 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAI 275 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhh
Confidence 4569999999999999999 999999887765
No 140
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=20.20 E-value=3.1e+02 Score=22.40 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHhhc-hhhhhHHHHHHHHHH
Q 031007 60 YDVPSREEIEDFFAEWQAS-AEAERKDAFVEFMKD 93 (167)
Q Consensus 60 ~dpPske~v~~~~~~~d~~-~~~l~keeF~ef~~k 93 (167)
+-++..++.+++|.-||.. ++.++-..--+.+|.
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa 39 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA 39 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHH
Confidence 4567778888888888888 777766666666664
No 141
>TIGR01102 yscR type III secretion apparatus protein, YscR/HrcR family. This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells.
Probab=20.11 E-value=5.3e+02 Score=21.93 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=8.3
Q ss_pred ccCCccchhHHHHH
Q 031007 132 KAIPDVIFVPSVTV 145 (167)
Q Consensus 132 k~vPn~vfvp~~T~ 145 (167)
+.+|-.+++|++.+
T Consensus 126 ~~~~~~vLiPAF~l 139 (202)
T TIGR01102 126 KKDSLLILLPAFTL 139 (202)
T ss_pred CCCCceeeHHHHHH
Confidence 45566666666544
No 142
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=20.07 E-value=1.9e+02 Score=17.62 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=19.2
Q ss_pred CCHHHHHHHHH----HHhhc-hh--hhhHHHHHHHHH
Q 031007 63 PSREEIEDFFA----EWQAS-AE--AERKDAFVEFMK 92 (167)
Q Consensus 63 Pske~v~~~~~----~~d~~-~~--~l~keeF~ef~~ 92 (167)
-+.++|++.|. +||.+ .+ ....+.|.++-.
T Consensus 12 ~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~ 48 (55)
T cd06257 12 ASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINE 48 (55)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHH
Confidence 47788887776 67777 33 345566665543
Done!