AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>031010
MLTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLS
NYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSE
DDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G54860 AT1G54860 AT1G54860	protein from Arabidopsis thaliana	2.9e-39
BLAST match view associations BLAST with AT3G06035 AT3G06035 AT3G06035	protein from Arabidopsis thaliana	3.2e-33
BLAST match view associations BLAST with AT5G19250 AT5G19250 AT5G19250	protein from Arabidopsis thaliana	4.2e-31
BLAST match view associations BLAST with AT5G19230 AT5G19230 AT5G19230	protein from Arabidopsis thaliana	2.6e-24
BLAST match view associations BLAST with AT5G19240 AT5G19240 AT5G19240	protein from Arabidopsis thaliana	7.8e-23
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031010
        (167 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2011025 - symbol:AT1G54860 "AT1G54860" species...   419  2.9e-39   1
TAIR|locus:505006331 - symbol:AT3G06035 "AT3G06035" speci...   362  3.2e-33   1
TAIR|locus:2182162 - symbol:AT5G19250 "AT5G19250" species...   342  4.2e-31   1
TAIR|locus:2182142 - symbol:AT5G19230 "AT5G19230" species...   278  2.6e-24   1
TAIR|locus:2182152 - symbol:AT5G19240 "AT5G19240" species...   264  7.8e-23   1


>TAIR|locus:2011025 [details] [associations]
            symbol:AT1G54860 "AT1G54860" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0016114 "terpenoid biosynthetic process" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0031225 EMBL:AC005388
            EMBL:AC069144 HOGENOM:HOG000242485 EMBL:AY085470 EMBL:BT003824
            EMBL:BT004947 IPI:IPI00538464 RefSeq:NP_564669.1 UniGene:At.37159
            PaxDb:Q9ZVL0 PRIDE:Q9ZVL0 EnsemblPlants:AT1G54860.1 GeneID:841925
            KEGG:ath:AT1G54860 TAIR:At1g54860 eggNOG:NOG252867
            InParanoid:Q9ZVL0 OMA:LSECKID PhylomeDB:Q9ZVL0
            ProtClustDB:CLSN2917281 ArrayExpress:Q9ZVL0 Genevestigator:Q9ZVL0
            Uniprot:Q9ZVL0
        Length = 200

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/141 (54%), Positives = 105/141 (74%)

Query:     6 EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTS------INIGVKSPPL 59
             EDNLLQG+NS+RT+  +P   K++KA C+ADE+A+ LEDQPCT+      +  G   P L
Sbjct:    32 EDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLEDQPCTNHTTASTVTPGSVPPRL 91

Query:    60 SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
             +NY  ++ +C ID NT RDG++LPVC+ + +PTL LTNYT + YA+YLN+S++ GAGVGS
Sbjct:    92 TNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGAGVGS 151

Query:   120 EDDWMVVVLTTNTAAGIFASG 140
             E +WMVVVLTT+T  G F +G
Sbjct:   152 EKEWMVVVLTTSTPGGSFTAG 172


>TAIR|locus:505006331 [details] [associations]
            symbol:AT3G06035 "AT3G06035" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0031225 "anchored to
            membrane" evidence=TAS] [GO:0010075 "regulation of meristem growth"
            evidence=RCA] GO:GO:0005886 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0031225 EMBL:AC068073 HOGENOM:HOG000242485
            ProtClustDB:CLSN2916455 EMBL:BT006414 EMBL:AY088405 EMBL:AF083696
            IPI:IPI00519419 RefSeq:NP_566267.1 UniGene:At.40575 PaxDb:Q84MC0
            PRIDE:Q84MC0 EnsemblPlants:AT3G06035.1 GeneID:819776
            KEGG:ath:AT3G06035 TAIR:At3g06035 eggNOG:NOG310952
            InParanoid:Q84MC0 OMA:VMPACVP PhylomeDB:Q84MC0
            Genevestigator:Q84MC0 GermOnline:AT3G06035 Uniprot:Q84MC0
        Length = 200

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/174 (41%), Positives = 107/174 (61%)

Query:     3 TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
             TD+ED LL GINS+RT+  + +L+K++ A CLADE+A+  +++PCT    S  +    P 
Sbjct:    26 TDEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPGTEPQ 85

Query:    59 LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVG 118
              +NY +++ KC ++++  RDG ++P CV  L   LVLTN+T S Y+  LN+SKF G G+G
Sbjct:    86 FANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIG 145

Query:   119 SEDDWMVVVLTTNTAAGIFASGAHHSVVSE-----IGWKRYAVCLLLGSLVYLV 167
              EDDW+VVVLTTNT  G +++       S      IG   Y V  +  S  + +
Sbjct:   146 KEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSSFCFFL 199


>TAIR|locus:2182162 [details] [associations]
            symbol:AT5G19250 "AT5G19250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0046658 "anchored to plasma membrane" evidence=IDA] [GO:0006833
            "water transport" evidence=RCA] [GO:0009651 "response to salt
            stress" evidence=RCA] [GO:0009750 "response to fructose stimulus"
            evidence=RCA] [GO:0030003 "cellular cation homeostasis"
            evidence=RCA] [GO:0070838 "divalent metal ion transport"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046658
            EMBL:AC069326 eggNOG:NOG323807 HOGENOM:HOG000242485 EMBL:BT014784
            EMBL:BT015011 EMBL:AK176065 IPI:IPI00536515 RefSeq:NP_197426.1
            UniGene:At.24816 STRING:P59833 PaxDb:P59833 PRIDE:P59833
            EnsemblPlants:AT5G19250.1 GeneID:832045 KEGG:ath:AT5G19250
            TAIR:At5g19250 InParanoid:P59833 OMA:NAECLAG PhylomeDB:P59833
            ProtClustDB:CLSN2916455 Genevestigator:P59833 GermOnline:AT5G19250
            Uniprot:P59833
        Length = 196

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 66/143 (46%), Positives = 96/143 (67%)

Query:     4 DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPPL 59
             D+ED LL GINS+R SL +  L  +  A CLADE+A+  ++QPCT    S ++   +P  
Sbjct:    28 DEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVPGTTPGF 87

Query:    60 SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
              N   L+ KC ++    RDG +LP CV +L P+LVLTN+T S Y++ LN+SKF G G+GS
Sbjct:    88 PNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGIGIGS 147

Query:   120 EDDWMVVVLTTNTAAGIFASGAH 142
             +D+W+VVVLTT+T  G ++  ++
Sbjct:   148 DDNWIVVVLTTSTPEGSYSPASN 170


>TAIR|locus:2182142 [details] [associations]
            symbol:AT5G19230 "AT5G19230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0031225 "anchored to
            membrane" evidence=TAS] [GO:0046658 "anchored to plasma membrane"
            evidence=IDA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046658
            EMBL:AC069326 EMBL:BT002398 EMBL:BT008443 IPI:IPI00548911
            RefSeq:NP_197424.1 UniGene:At.43949 PaxDb:Q8GUL8 PRIDE:Q8GUL8
            EnsemblPlants:AT5G19230.1 GeneID:832043 KEGG:ath:AT5G19230
            TAIR:At5g19230 eggNOG:NOG323807 HOGENOM:HOG000242485
            InParanoid:Q8GUL8 PhylomeDB:Q8GUL8 Genevestigator:Q8GUL8
            Uniprot:Q8GUL8
        Length = 189

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 62/136 (45%), Positives = 86/136 (63%)

Query:     3 TDDEDNLLQGI-NSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSN 61
             TD ED+LL  + N +RT L +  LTK++ A CLADEV + L++QPCT+ N    S P+  
Sbjct:    26 TDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVVDQLKNQPCTNTN---NSAPVPG 82

Query:    62 YNRLVKKCDIDINTNRDGVVLPVCV--HDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
              N L+ KC ++    RDGV++ VC   HD  P L  +N+ +S   + LN+SK  G G+GS
Sbjct:    83 -NNLLAKCSLNTTVVRDGVIMQVCFPKHDKNPDL--SNF-NSVVLKNLNDSKITGIGIGS 138

Query:   120 EDDWMVVVLTTNTAAG 135
              D W+VV+LTTNT  G
Sbjct:   139 GDIWVVVILTTNTPEG 154


>TAIR|locus:2182152 [details] [associations]
            symbol:AT5G19240 "AT5G19240" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0006569 "tryptophan catabolic process"
            evidence=RCA] [GO:0009684 "indoleacetic acid biosynthetic process"
            evidence=RCA] GO:GO:0005886 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0031225 EMBL:AC069326 eggNOG:NOG323807 HOGENOM:HOG000242485
            EMBL:AF083770 EMBL:BT004589 IPI:IPI00547867 RefSeq:NP_197425.1
            UniGene:At.19768 STRING:Q84VZ5 PaxDb:Q84VZ5 PRIDE:Q84VZ5
            EnsemblPlants:AT5G19240.1 GeneID:832044 KEGG:ath:AT5G19240
            TAIR:At5g19240 InParanoid:Q84VZ5 Genevestigator:Q84VZ5
            GermOnline:AT5G19240 Uniprot:Q84VZ5
        Length = 199

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 60/146 (41%), Positives = 87/146 (59%)

Query:     3 TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
             TD E+ L    N +R S+ +  L K+K A CLADEV + L++QPCT    S ++    P 
Sbjct:    27 TDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPGTDPG 86

Query:    59 LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVG 118
             + N+  L+ KC ++ N  RDG++L VC      T  L+++ +    + LN+SKF GAGVG
Sbjct:    87 IPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSFANV-LTKNLNDSKFTGAGVG 145

Query:   119 SEDD--WMVVVLTTNTAAGIFA-SGA 141
              + D  W+V VLTTNT  G ++ SGA
Sbjct:   146 IDSDGIWLVTVLTTNTPGGSYSNSGA 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       167   0.00075  108 3  11 22  0.40    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  157 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.27u 0.13s 15.40t   Elapsed:  00:00:00
  Total cpu time:  15.27u 0.13s 15.40t   Elapsed:  00:00:00
  Start:  Fri May 10 07:48:18 2013   End:  Fri May 10 07:48:18 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
