STRING 9.05 
  AT1G54860 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT1G54860
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- leaf whorl, petal, sepal, flower; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G19250.1); Has 42 Blast hits to 41 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (200 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G18280
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; protease inhibitor [...] (180 aa)
      0.863
AT3G18590
plastocyanin-like domain-containing protein; plastocyanin-like domain-containing protein; FUNCT [...] (188 aa)
       0.782
AT1G48940
plastocyanin-like domain-containing protein; plastocyanin-like domain-containing protein; FUNCT [...] (177 aa)
       0.782
AT1G64760
glycosyl hydrolase family 17 protein; glycosyl hydrolase family 17 protein; FUNCTIONS IN- catio [...] (481 aa)
       0.782
AT2G42940
DNA-binding family protein; DNA-binding family protein; FUNCTIONS IN- DNA binding; INVOLVED IN- [...] (257 aa)
       0.677
AT5G64790
glycosyl hydrolase family 17 protein; glycosyl hydrolase family 17 protein; FUNCTIONS IN- catio [...] (485 aa)
      0.675
AT1G33430
galactosyltransferase family protein; galactosyltransferase family protein; FUNCTIONS IN- trans [...] (395 aa)
       0.659
FLA3
FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR); FASCICLIN-LIKE ARABINOGALACTAN PROTE [...] (280 aa)
       0.595
SHT
SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE); N-acyltransferase/ hydroxycinnamoyltransferase/ [...] (451 aa)
       0.575
SBT5.4
SBT5.4; identical protein binding / serine-type endopeptidase; SBT5.4; FUNCTIONS IN- identical [...] (778 aa)
       0.567
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes

 Server load: very high (>100%)
Permalink