BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031010
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M57|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
pdb|1M57|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
Length = 566
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 123 WMVVVLTTNTAAGIFASGAHHSVVSEIGWKRY 154
W+ V T+ A +FA G + + S IGW Y
Sbjct: 144 WLYVAGTSLAVASLFAPGGNGQLGSGIGWVLY 175
>pdb|3OMI|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation
pdb|3OMI|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation
pdb|3OMN|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation In The
Reduced State
pdb|3OMN|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With D132a Mutation In The
Reduced State
Length = 535
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 123 WMVVVLTTNTAAGIFASGAHHSVVSEIGWKRY 154
W+ V T+ A +FA G + + S IGW Y
Sbjct: 128 WLYVAGTSLAVASLFAPGGNGQLGSGIGWVLY 159
>pdb|3OM3|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation In The
Reduced State
pdb|3OM3|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation In The
Reduced State
pdb|3OMA|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation
pdb|3OMA|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides With K362m Mutation
Length = 535
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 123 WMVVVLTTNTAAGIFASGAHHSVVSEIGWKRY 154
W+ V T+ A +FA G + + S IGW Y
Sbjct: 128 WLYVAGTSLAVASLFAPGGNGQLGSGIGWVLY 159
>pdb|1M56|A Chain A, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M56|G Chain G, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|2GSM|A Chain A, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides
pdb|2GSM|C Chain C, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides
pdb|3DTU|A Chain A, Catalytic Core Subunits (i And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides Complexed With Deoxycholic
Acid
pdb|3DTU|C Chain C, Catalytic Core Subunits (i And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides Complexed With Deoxycholic
Acid
pdb|3FYE|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State
pdb|3FYE|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State
pdb|3FYI|A Chain A, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State Bound
With Cyanide
pdb|3FYI|C Chain C, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase
From Rhodobacter Sphaeroides In The Reduced State Bound
With Cyanide
Length = 566
Score = 27.3 bits (59), Expect = 4.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 123 WMVVVLTTNTAAGIFASGAHHSVVSEIGWKRY 154
W+ V T+ A +FA G + + S IGW Y
Sbjct: 144 WLYVAGTSLAVASLFAPGGNGQLGSGIGWVLY 175
>pdb|2RIW|A Chain A, The Reactive Loop Cleaved Human Thyroxine Binding Globulin
Complexed With Thyroxine
Length = 338
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 49 SINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLN 108
S+ + S L +NRL++K +D+ + + +DL TL+ H+ Y
Sbjct: 242 SVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSI---SATYDLGATLLKMGIQHA----YSE 294
Query: 109 NSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWK 152
N+ F+G +ED+ G+ S A H V IG K
Sbjct: 295 NADFSGL---TEDN------------GLKLSNAAHKAVLHIGEK 323
>pdb|2RIV|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Human
Thyroxine Binding Globulin
pdb|2XN3|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Mefenamic Acid
Length = 343
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 49 SINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLN 108
S+ + S L +NRL++K +D+ + + +DL TL+ H+ Y
Sbjct: 247 SVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSI---SATYDLGATLLKMGIQHA----YSE 299
Query: 109 NSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWK 152
N+ F+G +ED+ G+ S A H V IG K
Sbjct: 300 NADFSGL---TEDN------------GLKLSNAAHKAVLHIGEK 328
>pdb|2CEO|A Chain A, Thyroxine-Binding Globulin Complex With Thyroxine
pdb|2CEO|B Chain B, Thyroxine-Binding Globulin Complex With Thyroxine
Length = 379
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 49 SINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLN 108
S+ + S L +NRL++K +D+ + + +DL TL+ H+ Y
Sbjct: 243 SVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSI---SATYDLGATLLKMGIQHA----YSE 295
Query: 109 NSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWK 152
N+ F+G +ED+ G+ S A H V IG K
Sbjct: 296 NADFSGL---TEDN------------GLKLSNAAHKAVLHIGEK 324
>pdb|2XN5|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Furosemide
pdb|2XN7|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein (T405-Cf)
Length = 350
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 49 SINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLN 108
S+ + S L +NRL++K +D+ + + +DL TL+ H+ Y
Sbjct: 248 SVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSI---SATYDLGATLLKMGIQHA----YSE 300
Query: 109 NSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWK 152
N+ F+G +ED+ G+ S A H V IG K
Sbjct: 301 NADFSGL---TEDN------------GLKLSNAAHKAVLHIGEK 329
>pdb|2XN6|A Chain A, Crystal Structure Of Thyroxine-Binding Globulin Complexed
With Thyroxine-Fluoresein
Length = 350
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 22/104 (21%)
Query: 49 SINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLN 108
S+ + S L +NRL++K +D+ + + +DL TL+ H+ Y
Sbjct: 248 SVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSI---SATYDLGATLLKMGIQHA----YSE 300
Query: 109 NSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWK 152
N+ F+G +ED+ G+ S A H V IG K
Sbjct: 301 NADFSGL---TEDN------------GLKLSNAAHKAVLHIGEK 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,045,585
Number of Sequences: 62578
Number of extensions: 195194
Number of successful extensions: 375
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 12
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)