BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031010
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84MC0|UGPI4_ARATH Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis
thaliana GN=At3g06035 PE=2 SV=1
Length = 200
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 9/174 (5%)
Query: 3 TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
TD+ED LL GINS+RT+ + +L+K++ A CLADE+A+ +++PCT S + P
Sbjct: 26 TDEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPGTEPQ 85
Query: 59 LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVG 118
+NY +++ KC ++++ RDG ++P CV L LVLTN+T S Y+ LN+SKF G G+G
Sbjct: 86 FANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIG 145
Query: 119 SEDDWMVVVLTTNTAAGIFASGAHHSVVSE-----IGWKRYAVCLLLGSLVYLV 167
EDDW+VVVLTTNT G +++ S IG Y V + S + +
Sbjct: 146 KEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSSFCFFL 199
>sp|P59833|UGPI3_ARATH Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis
thaliana GN=At5g19250 PE=1 SV=1
Length = 196
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 96/143 (67%), Gaps = 4/143 (2%)
Query: 4 DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPPL 59
D+ED LL GINS+R SL + L + A CLADE+A+ ++QPCT S ++ +P
Sbjct: 28 DEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVPGTTPGF 87
Query: 60 SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
N L+ KC ++ RDG +LP CV +L P+LVLTN+T S Y++ LN+SKF G G+GS
Sbjct: 88 PNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGIGIGS 147
Query: 120 EDDWMVVVLTTNTAAGIFASGAH 142
+D+W+VVVLTT+T G ++ ++
Sbjct: 148 DDNWIVVVLTTSTPEGSYSPASN 170
>sp|Q8GUL8|UGPI1_ARATH Uncharacterized GPI-anchored protein At5g19230 OS=Arabidopsis
thaliana GN=At5g19230 PE=1 SV=1
Length = 189
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 10/139 (7%)
Query: 3 TDDEDNLLQGI-NSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSN 61
TD ED+LL + N +RT L + LTK++ A CLADEV + L++QPCT+ N P
Sbjct: 26 TDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVVDQLKNQPCTNTNNSAPVPG--- 82
Query: 62 YNRLVKKCDIDINTNRDGVVLPVCV--HDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
N L+ KC ++ RDGV++ VC HD P L+N+ +S + LN+SK G G+GS
Sbjct: 83 -NNLLAKCSLNTTVVRDGVIMQVCFPKHDKNPD--LSNF-NSVVLKNLNDSKITGIGIGS 138
Query: 120 EDDWMVVVLTTNTAAGIFA 138
D W+VV+LTTNT G ++
Sbjct: 139 GDIWVVVILTTNTPEGGYS 157
>sp|Q84VZ5|UGPI2_ARATH Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis
thaliana GN=At5g19240 PE=2 SV=2
Length = 199
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 20/152 (13%)
Query: 3 TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
TD E+ L N +R S+ + L K+K A CLADEV + L++QPCT S ++ P
Sbjct: 27 TDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPGTDPG 86
Query: 59 LSNYNRLVKKCDIDINTNRDGVVLPVCV--HDLVPTLVLTNYTHSSYA----QYLNNSKF 112
+ N+ L+ KC ++ N RDG++L VC H P L SS+A + LN+SKF
Sbjct: 87 IPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDL-------SSFANVLTKNLNDSKF 139
Query: 113 AGAGVGSEDD--WMVVVLTTNTAAGIFA-SGA 141
GAGVG + D W+V VLTTNT G ++ SGA
Sbjct: 140 TGAGVGIDSDGIWLVTVLTTNTPGGSYSNSGA 171
>sp|Q5XK72|FA83G_XENLA Protein FAM83G OS=Xenopus laevis GN=fam83g PE=2 SV=1
Length = 933
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 14 NSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSI-----NIGVKSPPLSNYNRLVKK 68
NS +LG ++ ++++ + EDLE +P + +K PPL N+ L+K
Sbjct: 560 NSSGVTLGGQTVSNTEESSVASPGPYEDLEKEPVKDTVDELEDTSIKDPPLENFESLLKS 619
Query: 69 CDIDINTNRDGVVLP 83
+ I +N + V P
Sbjct: 620 QHLIIPSNTEPVTGP 634
>sp|Q803C7|LMBRL_DANRE Limb region 1 homolog-like protein OS=Danio rerio GN=lmbr1l PE=2
SV=1
Length = 491
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 24 VLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLP 83
+LT KK+A + V +D+ED I + + + LS V C + ++LP
Sbjct: 37 ILTHFKKSA---EFVTDDIEDATVNKIALWLCTFTLS-----VAVCAV--------LLLP 80
Query: 84 VCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHH 143
+ + + VL + HS Y Q+LN S G W +V L +N + A+
Sbjct: 81 ISI---LSNEVLLTFPHSYYMQWLNGSLIRGL-------WNLVFLFSNLSLVFLMPFAYF 130
Query: 144 SVVSE 148
SE
Sbjct: 131 FTESE 135
>sp|Q8K9P8|SOHB_BUCAP Probable protease SohB OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=sohB PE=3 SV=1
Length = 342
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 32 ACLADEVAEDLEDQPCTSI-NIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLV 90
AC+AD + P I +IGV L N+N+L+KKC+ID+ + G D
Sbjct: 178 ACVADYII----SAPFAIIGSIGV-VGQLPNFNKLLKKCNIDVELHTAG--------DYK 224
Query: 91 PTLVL----TNYTHSSYAQYLN 108
TL + T T + Q LN
Sbjct: 225 RTLTMFGQNTELTRKKFCQELN 246
>sp|A5GAG2|ATKA_GEOUR Potassium-transporting ATPase A chain OS=Geobacter uraniireducens
(strain Rf4) GN=kdpA PE=3 SV=1
Length = 592
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 148 EIGWKRYAVCLLLGSLVYLV 167
E+GWKRYA +LL +LV+ V
Sbjct: 60 EMGWKRYACAMLLFNLVFAV 79
>sp|A1B3F9|MURA_PARDP UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Paracoccus
denitrificans (strain Pd 1222) GN=murA PE=3 SV=1
Length = 426
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 30 KAACLADEVAEDLEDQPCTSINIGVKSPPLSN---YNRLVKKCDIDINTNRDGVVLPVCV 86
K ACLA A L DQP T N +P LS+ L++ ++ + +DG VL +
Sbjct: 22 KNACLALMPATLLTDQPLTLTN----APRLSDIRTMTALLQSLGAEVASLQDGQVLALSS 77
Query: 87 HDL 89
HDL
Sbjct: 78 HDL 80
>sp|A6UVG7|DAPA_META3 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=dapA PE=3 SV=1
Length = 288
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 6 EDNLLQGINSFRTSLGIPVL---TKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNY 62
++ L Q + S+ IP++ + A L E + L ++ + +P LS+
Sbjct: 110 QEGLKQHFSKIAESINIPIVLYNVPSRTAVNLQPETIKYLYEEYSNITTVKEANPDLSHI 169
Query: 63 NRLVKKCDIDINTNRDGVVLPVC------VHDLVPTLVLTNYTHSSYAQYLNNSKFAGA 115
+ ++ CDI + + D + LPV V +V +V + Y N KF A
Sbjct: 170 SDVINSCDISVLSGNDELTLPVISLGGNGVISVVANIVPNEFVQ--MVNYANEGKFKEA 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,832,293
Number of Sequences: 539616
Number of extensions: 2528569
Number of successful extensions: 5973
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5956
Number of HSP's gapped (non-prelim): 19
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)