Query 031010
Match_columns 167
No_of_seqs 40 out of 42
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:53:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05379 SCP_bacterial SCP_bact 97.6 7.9E-05 1.7E-09 52.3 3.8 42 7-48 2-43 (122)
2 TIGR02909 spore_YkwD uncharact 97.6 0.00025 5.5E-09 53.0 6.4 109 2-118 1-112 (127)
3 PF00188 CAP: Cysteine-rich se 92.4 0.021 4.5E-07 37.8 -1.2 43 10-52 1-44 (124)
4 cd05381 SCP_PR-1_like SCP_PR-1 86.8 0.46 1E-05 35.1 2.0 46 6-52 1-46 (136)
5 cd05384 SCP_PRY1_like SCP_PRY1 86.3 0.49 1.1E-05 34.6 1.8 38 5-42 2-39 (129)
6 cd00168 SCP SCP: SCP-like extr 84.8 0.51 1.1E-05 34.0 1.3 36 7-42 2-38 (122)
7 PF14412 AHH: A nuclease famil 80.4 0.96 2.1E-05 33.0 1.4 49 58-109 29-78 (109)
8 cd05382 SCP_GAPR-1_like SCP_GA 80.1 1.3 2.8E-05 32.2 1.9 39 6-44 3-41 (132)
9 COG2340 Uncharacterized protei 74.6 2.1 4.6E-05 35.1 1.9 109 3-119 78-188 (207)
10 cd05385 SCP_GLIPR-1_like SCP_G 70.5 4.1 8.9E-05 30.6 2.5 46 6-51 3-55 (144)
11 cd05380 SCP_euk SCP_euk: SCP-l 57.1 5.7 0.00012 28.6 1.1 43 7-49 2-58 (144)
12 PF10001 DUF2242: Uncharacteri 39.3 25 0.00055 28.1 2.3 56 82-137 42-109 (121)
13 smart00198 SCP SCP / Tpx-1 / A 36.4 21 0.00045 26.2 1.3 37 5-41 2-49 (144)
14 PF03164 Mon1: Trafficking pro 32.5 40 0.00087 30.8 2.7 40 78-132 220-259 (415)
15 PF12637 TSCPD: TSCPD domain; 29.8 76 0.0016 23.3 3.4 34 35-69 57-90 (95)
16 PF08291 Peptidase_M15_3: Pept 20.8 55 0.0012 24.4 1.2 37 89-125 72-108 (110)
17 PF12589 WBS_methylT: Methyltr 20.6 41 0.00089 24.8 0.5 7 108-114 75-81 (87)
18 COG3075 GlpB Anaerobic glycero 20.5 81 0.0018 29.9 2.5 51 35-86 154-226 (421)
No 1
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=97.59 E-value=7.9e-05 Score=52.32 Aligned_cols=42 Identities=29% Similarity=0.352 Sum_probs=37.2
Q ss_pred hHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCcc
Q 031010 7 DNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT 48 (167)
Q Consensus 7 d~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt 48 (167)
..+++.||.||+..++|+|+.+++-.+.|.+-|++.....+.
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~ 43 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYF 43 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCcc
Confidence 568999999999999999999999999999999988665553
No 2
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=97.56 E-value=0.00025 Score=53.02 Aligned_cols=109 Identities=22% Similarity=0.226 Sum_probs=65.3
Q ss_pred CCchhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhccccccccCCcee
Q 031010 2 LTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVV 81 (167)
Q Consensus 2 ~~d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC~inin~T~DG~i 81 (167)
|++.|+++|+-||.||+..+||+|+-|+.-.-.|.+=|+++..+.--..++ | ..-..-+.+++..++-. .=|-.
T Consensus 1 ~~~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~---~-~~~~~~~r~~~~g~~~~--~~gEN 74 (127)
T TIGR02909 1 LTAEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTS---P-TYGSPFDMMKKFGISYR--MAGEN 74 (127)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccC---C-CCCCHHHHHHHcCCCcc--cceee
Confidence 567899999999999999999999999999888887777775433222221 1 11111245555443211 11111
Q ss_pred eeeeccCCCccccccccchh--hhhhccc-CCCccccccc
Q 031010 82 LPVCVHDLVPTLVLTNYTHS--SYAQYLN-NSKFAGAGVG 118 (167)
Q Consensus 82 mPvCVP~l~~~~vltNyT~S--~y~~yLN-dSkytg~GiG 118 (167)
+-. -...+..++..+-+| ++..-|+ +.+..|||+.
T Consensus 75 i~~--g~~~~~~~v~~W~~S~gH~~nil~~~~~~~Gvg~~ 112 (127)
T TIGR02909 75 IAY--GNSTVEAVHNAWMNSPGHRANILNPNYTEIGVGYV 112 (127)
T ss_pred eec--cCCCHHHHHHHHHcCHhHHHHHcCCCcCeEeEEEE
Confidence 110 011334566777666 5666665 4566666664
No 3
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=92.45 E-value=0.021 Score=37.82 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=30.5
Q ss_pred hhhhhhhh-hhcCCCccccCCCCcccHHHHHHHcCCCCccccCC
Q 031010 10 LQGINSFR-TSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINI 52 (167)
Q Consensus 10 l~~iN~YR-~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~ 52 (167)
|+-+|.|| ...++|+|+-++...=.|.+-|++....++.....
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~~~~~~~~~ 44 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCANSNSLSHDS 44 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCSSEETTEES
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhhhccccccc
Confidence 67899999 88999999988887777888888876644444444
No 4
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=86.80 E-value=0.46 Score=35.05 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=38.7
Q ss_pred hhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCC
Q 031010 6 EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINI 52 (167)
Q Consensus 6 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~ 52 (167)
++++|+..|.||...++|+|+=++.-.=.|.+-|+++. ..|.....
T Consensus 1 ~~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~-~~c~~~~~ 46 (136)
T cd05381 1 PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRR-GDCALVHS 46 (136)
T ss_pred ChHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhc-CCCCcccC
Confidence 46799999999999999999999888888888888886 57765443
No 5
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=86.26 E-value=0.49 Score=34.64 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=33.9
Q ss_pred hhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHc
Q 031010 5 DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDL 42 (167)
Q Consensus 5 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~ 42 (167)
-+..+|+.+|.||...++|+|+=+..-+-.|..-|++.
T Consensus 2 ~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c 39 (129)
T cd05384 2 FASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSY 39 (129)
T ss_pred HHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHh
Confidence 46789999999999999999999998888888888875
No 6
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=84.79 E-value=0.51 Score=34.00 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=31.9
Q ss_pred hHHhhhhhhhhhhc-CCCccccCCCCcccHHHHHHHc
Q 031010 7 DNLLQGINSFRTSL-GIPVLTKHKKAACLADEVAEDL 42 (167)
Q Consensus 7 d~Ll~~iN~YR~sl-nLp~L~kN~kA~ClA~eiA~~~ 42 (167)
+++|+-+|.||... ++|+|.=+...+=.|.+-|++.
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c 38 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRC 38 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhc
Confidence 46899999999999 9999999988888888888775
No 7
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=80.45 E-value=0.96 Score=32.98 Aligned_cols=49 Identities=27% Similarity=0.455 Sum_probs=39.4
Q ss_pred CCCChhHhhhhccccccccCCceeeeeeccCCCccccccccchhh-hhhcccC
Q 031010 58 PLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSS-YAQYLNN 109 (167)
Q Consensus 58 q~pnyp~~l~kC~inin~T~DG~imPvCVP~l~~~~vltNyT~S~-y~~yLNd 109 (167)
..+...+.|.++.+++|...+|+.||..-. +....+.-.|+. |.+++++
T Consensus 29 ~~~~~~~~l~~~g~~in~~~Ngv~Lp~~~~---~~~~~H~g~H~~~Y~~~V~~ 78 (109)
T PF14412_consen 29 RSPKLRKILEKYGIDINDPENGVWLPNSEK---PGRPPHRGRHPNEYNKYVRE 78 (109)
T ss_pred ccHHHHHHHHHcCCCcCCccceeeeeccCC---CCcCCcCCCCcHHHHHHHHH
Confidence 346677899999999999999999997665 666677766665 8888764
No 8
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=80.07 E-value=1.3 Score=32.16 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=32.2
Q ss_pred hhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCC
Q 031010 6 EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLED 44 (167)
Q Consensus 6 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~ 44 (167)
+.++|+-+|.||...++|+|+=|+.-.=.|.+-|++...
T Consensus 3 ~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~ 41 (132)
T cd05382 3 QKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLAS 41 (132)
T ss_pred HHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhh
Confidence 567999999999999999999887766677777776653
No 9
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=74.57 E-value=2.1 Score=35.09 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=70.7
Q ss_pred CchhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhccccccccCCceee
Q 031010 3 TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVL 82 (167)
Q Consensus 3 ~d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC~inin~T~DG~im 82 (167)
.+.|...++-+|.+|+..+||+|+-|+-..=.|++-|++..+ .....-+.| ..+++-+-+++=++.-. .-|-.+
T Consensus 78 ~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~---~g~~sH~~~-~g~~~~~r~~~~g~~~~--~agENI 151 (207)
T COG2340 78 AQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAK---NGYFSHTSP-TGETPADRLKKYGISGA--TAGENI 151 (207)
T ss_pred chhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHH---cCCccccCC-CCCCHHHHHHhCCcccc--ccccee
Confidence 577889999999999999999999999988888888887644 222222222 34444556665554443 111111
Q ss_pred eeeccCCCc-cccccccchhh-hhhcccCCCcccccccC
Q 031010 83 PVCVHDLVP-TLVLTNYTHSS-YAQYLNNSKFAGAGVGS 119 (167)
Q Consensus 83 PvCVP~l~~-~~vltNyT~S~-y~~yLNdSkytg~GiGs 119 (167)
..-- .++ ..++-.+=.|. ..+.|=|..|+.+|+|.
T Consensus 152 a~g~--~~~~~~~v~~Wl~S~gH~~nll~~~~~~~Gv~~ 188 (207)
T COG2340 152 AYGS--NDPPEAAVDGWLNSPGHRKNLLNPAYTEIGVGV 188 (207)
T ss_pred ecCC--CCchHHHHHHhcCChhhhhhccCcchhheeEEE
Confidence 1100 111 35566666674 77778888999999884
No 10
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=70.47 E-value=4.1 Score=30.55 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=30.6
Q ss_pred hhHHhhhhhhhhhhc-----CCCccccCCCCcccHHHHHHH--cCCCCccccC
Q 031010 6 EDNLLQGINSFRTSL-----GIPVLTKHKKAACLADEVAED--LEDQPCTSIN 51 (167)
Q Consensus 6 Ed~Ll~~iN~YR~sl-----nLp~L~kN~kA~ClA~eiA~~--~~~qpCt~~t 51 (167)
.+++|+-.|.||... +++.|+=+..-+=.|.+-|++ +++.+|.+..
T Consensus 3 ~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~~C~~~~~~~~~~~ 55 (144)
T cd05385 3 IDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKR 55 (144)
T ss_pred HHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHhcCCCCCCchhhcc
Confidence 477999999999987 445577665555566666666 2334565543
No 11
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=57.07 E-value=5.7 Score=28.58 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=33.5
Q ss_pred hHHhhhhhhhhhhc------------CCCccccCCCCcccHHHHHHHcC--CCCccc
Q 031010 7 DNLLQGINSFRTSL------------GIPVLTKHKKAACLADEVAEDLE--DQPCTS 49 (167)
Q Consensus 7 d~Ll~~iN~YR~sl------------nLp~L~kN~kA~ClA~eiA~~~~--~qpCt~ 49 (167)
+.+|+.+|.||... +.+.|+=+..-+=.|.+-|++.. +.+|..
T Consensus 2 ~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~ 58 (144)
T cd05380 2 QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFEHSPCRN 58 (144)
T ss_pred cHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHhcCCCcCCcccC
Confidence 46899999999998 88999988877777777777762 335554
No 12
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=39.34 E-value=25 Score=28.15 Aligned_cols=56 Identities=36% Similarity=0.444 Sum_probs=43.1
Q ss_pred eeeeccCCCc---cccccccchhhhh-hcccCCCccccc--------ccCCCceEEEEEeccCCCCcc
Q 031010 82 LPVCVHDLVP---TLVLTNYTHSSYA-QYLNNSKFAGAG--------VGSEDDWMVVVLTTNTAAGIF 137 (167)
Q Consensus 82 mPvCVP~l~~---~~vltNyT~S~y~-~yLNdSkytg~G--------iGsed~WmVvVLtTnT~~Gsf 137 (167)
=-||.|.-.. +.+|.|=++.+|+ |=-|+|-=.|+| +|++||=||=|-+.--+.+.|
T Consensus 42 ~vvCa~~~~~~~~s~~fvnAlQdrY~lKks~~SASvGV~~lGSvSlP~~ss~DslVKv~seTI~~~~F 109 (121)
T PF10001_consen 42 RVVCAPDGSGGQSSTVFVNALQDRYALKKSNNSASVGVGVLGSVSLPISSSDDSLVKVASETIADGDF 109 (121)
T ss_pred EEEECCCCCCCeeEEEEEEeeeeeeeeeecCCcceEeeeeeEEEEeeccCCCccEEEeeeeeecchhH
Confidence 3589999766 8999999999986 556777666655 468999999887766666666
No 13
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=36.43 E-value=21 Score=26.16 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.3
Q ss_pred hhhHHhhhhhhhhhhcC-----------CCccccCCCCcccHHHHHHH
Q 031010 5 DEDNLLQGINSFRTSLG-----------IPVLTKHKKAACLADEVAED 41 (167)
Q Consensus 5 ~Ed~Ll~~iN~YR~sln-----------Lp~L~kN~kA~ClA~eiA~~ 41 (167)
..+.+|...|.||.... .+.|.=+..-+=.|.+.|++
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~~ 49 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWANQ 49 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHHh
Confidence 35789999999999977 88888776655566666665
No 14
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=32.49 E-value=40 Score=30.76 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=28.3
Q ss_pred CceeeeeeccCCCccccccccchhhhhhcccCCCcccccccCCCceEEEEEeccC
Q 031010 78 DGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNT 132 (167)
Q Consensus 78 DG~imPvCVP~l~~~~vltNyT~S~y~~yLNdSkytg~GiGsed~WmVvVLtTnT 132 (167)
.=.-+|+|.|+..++--|.=| -+||.+ +.+...|.++++.
T Consensus 220 ~E~W~PICLP~FN~~GFLyay-----v~~l~~----------~~~~~lvLiS~~~ 259 (415)
T PF03164_consen 220 GESWIPICLPKFNPNGFLYAY-----VSYLDE----------DSPVCLVLISTDK 259 (415)
T ss_pred CCceeccCCcccCCCceEEEE-----eeeccC----------CCceEEEEEeCCH
Confidence 346799999999887666544 466666 6667777777764
No 15
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=29.80 E-value=76 Score=23.32 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhc
Q 031010 35 ADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKC 69 (167)
Q Consensus 35 A~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC 69 (167)
.++|++||++..|.....-.. .+...-||++.|.
T Consensus 57 ~~~ii~~L~gi~~~~~~~~~~-~~~~S~~D~Ia~~ 90 (95)
T PF12637_consen 57 PEEIIDQLRGIRCGPSGTVGG-SRVTSCPDAIAKA 90 (95)
T ss_pred HHHHHHHhcCCCCCCCCccCC-CccCcHHHHHHHH
Confidence 689999999999987765222 3788888988764
No 16
>PF08291 Peptidase_M15_3: Peptidase M15 ; InterPro: IPR013230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents the C-terminal domain of zinc D-Ala-D-Ala carboxypeptidases from Streptomyces species and non-peptidase homologues that belong to MEROPS peptidase family M15 (subfamily M15A, clan MD) [].; PDB: 1LBU_A.
Probab=20.80 E-value=55 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=25.6
Q ss_pred CCccccccccchhhhhhcccCCCcccccccCCCceEE
Q 031010 89 LVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMV 125 (167)
Q Consensus 89 l~~~~vltNyT~S~y~~yLNdSkytg~GiGsed~WmV 125 (167)
.+-+....+.+..+..+++...-+.++|++-...|+=
T Consensus 72 ~A~Di~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~vH 108 (110)
T PF08291_consen 72 RAADIVVSGMSPEEVAQIARSAGFFGIGIYRYSGFVH 108 (110)
T ss_dssp -EEEE--TTT-HHHHHHHGGGTT-SEETSTT-SSSEE
T ss_pred EeEEEecCCCCHHHHHHHHHHcCCCCeeeccCCCEEE
Confidence 4455667777778899999999999999999889974
No 17
>PF12589 WBS_methylT: Methyltransferase involved in Williams-Beuren syndrome; InterPro: IPR022238 This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with PF08241 from PFAM. This family is made up of S-adenosylmethionine-dependent methyltransferases []. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype [].
Probab=20.59 E-value=41 Score=24.82 Aligned_cols=7 Identities=43% Similarity=0.904 Sum_probs=3.9
Q ss_pred cCCCccc
Q 031010 108 NNSKFAG 114 (167)
Q Consensus 108 NdSkytg 114 (167)
.||||||
T Consensus 75 ~DSKYTG 81 (87)
T PF12589_consen 75 PDSKYTG 81 (87)
T ss_pred CCCCCCC
Confidence 3556655
No 18
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=20.54 E-value=81 Score=29.88 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCCccccCCCCCCCCC----------------------CChhHhhhhccccccccCCceeeeeec
Q 031010 35 ADEVAEDLEDQPCTSINIGVKSPPL----------------------SNYNRLVKKCDIDINTNRDGVVLPVCV 86 (167)
Q Consensus 35 A~eiA~~~~~qpCt~~t~g~~~~q~----------------------pnyp~~l~kC~inin~T~DG~imPvCV 86 (167)
+.-.|+.|+.+.|.-+|..-+-|++ ++++.+.+.= +.+.++-|-|+||+|.
T Consensus 154 p~l~Aa~L~~a~~~~~t~~l~iP~ld~LR~n~~efR~vNiarlLd~~~~~~~L~d~l-~~~a~~ad~V~~PAc~ 226 (421)
T COG3075 154 PQLAAANLRQAGLPVTTAELNLPELDVLRDNATEFRAVNIARLLDNEEAWPALADEL-IPVANTAEMVLMPACF 226 (421)
T ss_pred HHHHHHHHHHcCCcceeccccCCChhhhhcCchhhhhcCHHHHhcchhhhHHHHHHH-HHhcCCcceEeeceee
Confidence 4566777777888887773333333 3445555444 7889999999999995
Done!