Query 031010
Match_columns 167
No_of_seqs 40 out of 42
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ifa_A Extracellular protein c 94.0 0.016 5.6E-07 50.2 1.4 117 5-130 220-338 (339)
2 4h0a_A Uncharacterized protein 93.0 0.026 8.8E-07 48.2 1.0 113 5-126 205-318 (323)
3 1cfe_A Pathogenesis-related pr 88.5 0.22 7.4E-06 36.4 2.1 46 4-50 2-47 (135)
4 3u3l_C Tablysin 15; CAP domain 65.0 1.9 6.3E-05 34.0 0.8 46 4-49 39-97 (233)
5 3q2u_A Glioma pathogenesis-rel 59.2 5.7 0.00019 30.4 2.6 45 6-50 19-70 (205)
6 4aiw_A Golgi-associated plant 58.8 3.2 0.00011 30.9 1.1 37 5-41 9-45 (154)
7 2vzn_A Venom allergen 3; major 51.2 5.7 0.0002 30.9 1.5 44 6-49 43-105 (218)
8 1qnx_A VES V 5, antigen 5; all 49.9 6.1 0.00021 30.5 1.4 44 6-49 46-108 (209)
9 3plv_C 66 kDa U4/U6.U5 small n 23.2 43 0.0015 18.5 1.7 16 11-26 5-20 (21)
10 2ddb_A Pseudecin, channel bloc 23.0 30 0.001 27.0 1.3 39 3-41 3-46 (210)
11 1xta_A Natrin 1; crisp, serine 21.7 29 0.001 27.2 1.1 38 4-41 13-55 (221)
No 1
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=93.96 E-value=0.016 Score=50.18 Aligned_cols=117 Identities=18% Similarity=0.250 Sum_probs=65.8
Q ss_pred hhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhccccccccCCceeeee
Q 031010 5 DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPV 84 (167)
Q Consensus 5 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC~inin~T~DG~imPv 84 (167)
.|.++|.-+|.||+..+||+|+-|+...-.|..=|+++-..-+-..+++. -.+..+.+++..+..... |--+=.
T Consensus 220 ~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~~----G~~~~~R~~~~G~~~~~~--GENIA~ 293 (339)
T 4ifa_A 220 NMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPT----LGTLGDRLQRGKVGFQLA--GENIAA 293 (339)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBTT----TBCHHHHHHHTTCCCSEE--EEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCCC----CCCHHHHHHHcCCCcCce--eEEEEE
Confidence 47899999999999999999999999888887777765433222222211 112335555554321110 000000
Q ss_pred eccCCCccccccccchh--hhhhcccCCCcccccccCCCceEEEEEec
Q 031010 85 CVHDLVPTLVLTNYTHS--SYAQYLNNSKFAGAGVGSEDDWMVVVLTT 130 (167)
Q Consensus 85 CVP~l~~~~vltNyT~S--~y~~yLNdSkytg~GiGsed~WmVvVLtT 130 (167)
.- ..+..++..+-.| +.+. |=+..|+-+|||-...|.+.++.+
T Consensus 294 G~--~s~~~av~~WmnSpGHr~N-IL~~~~t~iGvGv~~~YwtQ~F~~ 338 (339)
T 4ifa_A 294 QH--SDGVAALQGWLNSEGHRKN-LLNEQFTGLGVGVYDKFYTQNFIR 338 (339)
T ss_dssp SC--SSHHHHHHHHHTSHHHHHH-HTCTTCCEEEEEEETTEEEEEEEE
T ss_pred eC--CCHHHHHHHHhCCHhHHHH-HhCCCCCEEEEEEEecEEEEEEec
Confidence 00 1122334444445 4444 445677777777666655666553
No 2
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=93.02 E-value=0.026 Score=48.19 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=64.6
Q ss_pred hhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhccccccccCCceeeee
Q 031010 5 DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPV 84 (167)
Q Consensus 5 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC~inin~T~DG~imPv 84 (167)
+|.++|+-||.||+..+||+|+-|+...-.|..=|++....--. .++ + .-.+..+.+++..+.-.....=+-.
T Consensus 205 ~e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~-h~~---~-~g~~~~~R~~~~g~~~~~~gENIA~-- 277 (323)
T 4h0a_A 205 QLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSD-SVE---F-TEDALRGQLDKNHVTYKTTAQNVGY-- 277 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC-------C---C-CHHHHHHHHHHTTCCCSEEEEEEEE--
T ss_pred HHHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCC-CcC---C-CCCCHHHHHHHcCCCcCeeeeEEec--
Confidence 45789999999999999999999999988988888887433211 111 1 1112345566555432211100000
Q ss_pred eccCCCccccccccchh-hhhhcccCCCcccccccCCCceEEE
Q 031010 85 CVHDLVPTLVLTNYTHS-SYAQYLNNSKFAGAGVGSEDDWMVV 126 (167)
Q Consensus 85 CVP~l~~~~vltNyT~S-~y~~yLNdSkytg~GiGsed~WmVv 126 (167)
=-..+.-++..+-.| ...+.|=|.+|+-+|||-..++.+-
T Consensus 278 --g~~~~~~vv~~WmnSpgHR~NiL~~~~t~iGvGv~~~YwTQ 318 (323)
T 4h0a_A 278 --AFNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSL 318 (323)
T ss_dssp --SCCSHHHHHHHHHTSHHHHHHHTCSSCCEEEEEEETTEEEE
T ss_pred --CCCCHHHHHHHHHcCHHHHHHHcCCCCCEEEEEEEcCEEEE
Confidence 001233355555556 2444455678888888865554333
No 3
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1
Probab=88.46 E-value=0.22 Score=36.43 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=38.7
Q ss_pred chhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCcccc
Q 031010 4 DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSI 50 (167)
Q Consensus 4 d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~ 50 (167)
+.++++|+-.|.||...++|+|+=++.-.=.|.+-|+++.+ -|.-.
T Consensus 2 ~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~-~c~~~ 47 (135)
T 1cfe_A 2 NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAG-DCNLI 47 (135)
T ss_dssp CSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTT-TCCSC
T ss_pred cHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhc-CCCcc
Confidence 46788999999999999999999999988888888887753 36543
No 4
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*
Probab=65.04 E-value=1.9 Score=33.99 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=33.8
Q ss_pred chhhHHhhhhhhhhhhc-----------CCCccccCCCCcccHHHHHHHc--CCCCccc
Q 031010 4 DDEDNLLQGINSFRTSL-----------GIPVLTKHKKAACLADEVAEDL--EDQPCTS 49 (167)
Q Consensus 4 d~Ed~Ll~~iN~YR~sl-----------nLp~L~kN~kA~ClA~eiA~~~--~~qpCt~ 49 (167)
+..+.+|+-.|.||... |.|.|+=++.-+=+|.+-|++- ++.+|-+
T Consensus 39 ~~~~~il~~HN~~R~~va~G~~~~P~A~nM~~L~Wd~~La~~Aq~~a~~C~~~h~~c~~ 97 (233)
T 3u3l_C 39 EHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKGCVGETHACRN 97 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCCBSSCBCCEECHHHHHHHHHHHTTCCSCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccCCccEECHHHHHHHHHHHHhCCCCCCcccc
Confidence 34588999999999987 6788888877777777777763 3345543
No 5
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A
Probab=59.24 E-value=5.7 Score=30.40 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=33.5
Q ss_pred hhHHhhhhhhhhhhcCCC-----ccccCCCCcccHHHHHHH--cCCCCcccc
Q 031010 6 EDNLLQGINSFRTSLGIP-----VLTKHKKAACLADEVAED--LEDQPCTSI 50 (167)
Q Consensus 6 Ed~Ll~~iN~YR~slnLp-----~L~kN~kA~ClA~eiA~~--~~~qpCt~~ 50 (167)
.+++|+..|.||....-| .|+=++.-.=.|.+-|++ +++.+|.++
T Consensus 19 ~~~~L~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~C~~~h~~~~~~ 70 (205)
T 3q2u_A 19 IKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKP 70 (205)
T ss_dssp HHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTTCBSSCCTTSST
T ss_pred HHHHHHHHHHHHHhcCCCcccCccCccCHHHHHHHHHHHHhCCCCCCccccc
Confidence 378999999999998665 488777777777777776 455566543
No 6
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*
Probab=58.84 E-value=3.2 Score=30.89 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=26.9
Q ss_pred hhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHH
Q 031010 5 DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAED 41 (167)
Q Consensus 5 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~ 41 (167)
-++++|+.-|.||+..+.|+|+=++.-.=.|.+-|++
T Consensus 9 f~~~iL~~HN~~R~~~~~~~L~wd~~La~~Aq~~A~~ 45 (154)
T 4aiw_A 9 FHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEA 45 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHH
Confidence 3577999999999999999998776533334444443
No 7
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}
Probab=51.16 E-value=5.7 Score=30.92 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=31.9
Q ss_pred hhHHhhhhhhhhhhc-----------------CCCccccCCCCcccHHHHHHH--cCCCCccc
Q 031010 6 EDNLLQGINSFRTSL-----------------GIPVLTKHKKAACLADEVAED--LEDQPCTS 49 (167)
Q Consensus 6 Ed~Ll~~iN~YR~sl-----------------nLp~L~kN~kA~ClA~eiA~~--~~~qpCt~ 49 (167)
.+.+|...|.||... ++|+|+=++.-.=.|.+-|++ +++.+|.+
T Consensus 43 ~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~~C~~~Hs~c~~ 105 (218)
T 2vzn_A 43 KDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRN 105 (218)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCTTSCCCCBSCCCCCEECHHHHHHHHHHHTTCCSSCCSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCCCchhhchhccCCHHHHHHHHHHHHhCCcCCCCCCC
Confidence 467999999999975 356788777766677777776 34446644
No 8
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1
Probab=49.85 E-value=6.1 Score=30.48 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=31.4
Q ss_pred hhHHhhhhhhhhhhc-----------------CCCccccCCCCcccHHHHHHH--cCCCCccc
Q 031010 6 EDNLLQGINSFRTSL-----------------GIPVLTKHKKAACLADEVAED--LEDQPCTS 49 (167)
Q Consensus 6 Ed~Ll~~iN~YR~sl-----------------nLp~L~kN~kA~ClA~eiA~~--~~~qpCt~ 49 (167)
.+.+|+..|.||... ++|+|+=++.-.=.|.+-|++ +++.+|.+
T Consensus 46 ~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~~C~~~h~~~~~ 108 (209)
T 1qnx_A 46 KQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTCRD 108 (209)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHTTCCCSCCSCCC
T ss_pred HHHHHHHHHHHHHHHhcCccccCCCCCCCccccccccccCHHHHHHHHHHHhcCcccCCCccC
Confidence 478999999999975 256787777766677777776 34445544
No 9
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=23.22 E-value=43 Score=18.53 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.4
Q ss_pred hhhhhhhhhcCCCccc
Q 031010 11 QGINSFRTSLGIPVLT 26 (167)
Q Consensus 11 ~~iN~YR~slnLp~L~ 26 (167)
+.-|+-|.+++|+++.
T Consensus 5 EEtnk~r~~lGLkplp 20 (21)
T 3plv_C 5 EETNELRASLGLKLIP 20 (26)
T ss_dssp HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHcCCCCCC
Confidence 4569999999999874
No 10
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Probab=23.02 E-value=30 Score=26.98 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=27.9
Q ss_pred CchhhHHhhhhhhhhhhcCCC-----ccccCCCCcccHHHHHHH
Q 031010 3 TDDEDNLLQGINSFRTSLGIP-----VLTKHKKAACLADEVAED 41 (167)
Q Consensus 3 ~d~Ed~Ll~~iN~YR~slnLp-----~L~kN~kA~ClA~eiA~~ 41 (167)
.+...++|+..|.||....-| .|+=++...=.|++-|++
T Consensus 3 ~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~ 46 (210)
T 2ddb_A 3 KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADR 46 (210)
T ss_dssp -CHHHHHHHHHHHHHTTCSSCBSSCBCCEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCcccccCHHHHHHHHHHHhc
Confidence 456678999999999998655 476666655556666654
No 11
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A
Probab=21.74 E-value=29 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=27.9
Q ss_pred chhhHHhhhhhhhhhhcCCC-----ccccCCCCcccHHHHHHH
Q 031010 4 DDEDNLLQGINSFRTSLGIP-----VLTKHKKAACLADEVAED 41 (167)
Q Consensus 4 d~Ed~Ll~~iN~YR~slnLp-----~L~kN~kA~ClA~eiA~~ 41 (167)
+...++|+..|.||....-| .|+=++...=.|++-|++
T Consensus 13 ~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~~ 55 (221)
T 1xta_A 13 KKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANT 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCccccCccCccCHHHHHHHHHHHhc
Confidence 34577999999999998665 577777665566666654
Done!