BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031011
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain
pdb|3IKK|B Chain B, Crystal Structure Analysis Of Msp Domain
Length = 127
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 8 QLISVHPE-ELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWD 66
Q++S+ P+ ELKF +LK+ N T+ +V FKVKTT+P++Y VRPN+G++
Sbjct: 8 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 67 SCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLPPDTFNKDSGKTIEECKLRV 126
S + V LQ + P+ + K KF++QS P TD D+ + + + + + KLR
Sbjct: 68 SINVSVMLQP-FDYDPNEKSKHKFMVQSMFAP--TDTSDMEA-VWKEAKPEDLMDSKLRC 123
Query: 127 VY 128
V+
Sbjct: 124 VF 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp
Domain And Human Osbp Ffat Motif
Length = 130
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 1 MTADGGNQLISVHPEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTG 60
+ +D L+ P +LKF +LK+ N ++ V FKVKTT+P++Y VRPN+G
Sbjct: 2 LGSDHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSG 61
Query: 61 VVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNT-DVDDLPPDTFNKDSGKTI 119
++ P + + V LQ + P+ + K KF++Q+ P NT D++ + + + +
Sbjct: 62 IIDPGSTVTVSVMLQP-FDYDPNEKSKHKFMVQTIFAPPNTSDMEAV----WKEAKPDEL 116
Query: 120 EECKLRVVYVSPS 132
+ KLR V+ P+
Sbjct: 117 MDSKLRCVFEMPN 129
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp-
Associated Proteina
Length = 147
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 14 PEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73
P +LKF +LK+ N ++ V FKVKTT+P++Y VRPN+G++ P + V
Sbjct: 20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVM 79
Query: 74 LQAQRESPPDMQCKDKFLLQSTIVPSN-TDVDDLPPDTFNKDSGKTIEECKLRVVYVSPS 132
LQ + P+ + K KF++Q+ P N +D++ + + + + + KLR V+ P+
Sbjct: 80 LQP-FDYDPNEKSKHKFMVQTIFAPPNISDMEAV----WKEAKPDELMDSKLRCVFEMPN 134
Query: 133 SAQGNLEDEGLVSA 146
L D G S
Sbjct: 135 E-NDKLNDSGPSSG 147
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|B Chain B, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|C Chain C, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|D Chain D, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|E Chain E, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|F Chain F, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
Length = 128
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 14 PEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73
P +LKF +LK+ N ++ V FKVKTT+P++Y VRPN+GV+ P + V
Sbjct: 16 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVM 75
Query: 74 LQAQRESPPDMQCKDKFLLQSTIVPSN 100
LQ + P+ + K KF++Q+ P N
Sbjct: 76 LQP-FDYDPNEKSKHKFMVQTIFAPPN 101
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp
Homology Domain
Length = 128
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 14 PEELKFIFELEKQGFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73
P +LKF +LK+ N ++ V FKVKTT+P++Y VRPN+GV+ P + V
Sbjct: 16 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVX 75
Query: 74 LQAQRESPPDMQCKDKFLLQSTIVPSN 100
LQ + P+ + K KF +Q+ P N
Sbjct: 76 LQP-FDYDPNEKSKHKFXVQTIFAPPN 101
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna
6030424e15
Length = 152
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 9 LISVHPEELKFIFELEKQGFCDLKVINN-TEHHVAFKVKTTSPKKYFVRPNTGVVQPWDS 67
L+ + P E + +E L V+ N T++ VAFKV+TT+P+KY V+P+ P S
Sbjct: 18 LLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGAS 77
Query: 68 CIIRVTLQAQRESPPDMQCKDKFLLQST 95
I V+ + +D+FL+ +
Sbjct: 78 IDIIVSPHGGL----TVSAQDRFLIMAA 101
>pdb|1GRW|A Chain A, C. Elegans Major Sperm Protein
pdb|1GRW|B Chain B, C. Elegans Major Sperm Protein
pdb|1GRW|C Chain C, C. Elegans Major Sperm Protein
pdb|1GRW|D Chain D, C. Elegans Major Sperm Protein
Length = 126
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 31 LKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQA 76
+KVIN++ + + +KTT+ K+ V P GV+ P ++ ++ V+ A
Sbjct: 31 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAVSCDA 76
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 50 PKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTDVDDLP 107
P RP+ G+VQ W L+ + +SP D Q D F LQ I N D +P
Sbjct: 81 PDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNF-LQVLIKVRNRHNDVVP 137
>pdb|2MSP|A Chain A, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|B Chain B, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|C Chain C, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|D Chain D, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|E Chain E, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|F Chain F, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|G Chain G, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|H Chain H, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
Length = 126
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 31 LKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKF 90
+K+ N + + +KTT+ ++ V P +GV+ P + ++ V+ + D+ D+
Sbjct: 31 IKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLMAVSCDTFNAATEDLN-NDRI 89
Query: 91 LLQSTIVP 98
++ T P
Sbjct: 90 CIEWTNTP 97
>pdb|1MSP|A Chain A, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|1MSP|B Chain B, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|3MSP|A Chain A, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr,
20 Structures
pdb|3MSP|B Chain B, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr,
20 Structures
Length = 126
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 31 LKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQCKDKF 90
+K+ N + + +KTT+ ++ V P GV+ P + ++ V+ + D+ D+
Sbjct: 31 IKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLN-NDRI 89
Query: 91 LLQSTIVP 98
++ T P
Sbjct: 90 TIEWTNTP 97
>pdb|1ROW|A Chain A, Structure Of Ssp-19, An Msp-Domain Protein Like Family
Member In Caenorhabditis Elegans
pdb|1ROW|B Chain B, Structure Of Ssp-19, An Msp-Domain Protein Like Family
Member In Caenorhabditis Elegans
Length = 109
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 32 KVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDS--CIIRVTLQAQRE 79
K++N + FK+K+++ +Y + P G V P S +I T A +E
Sbjct: 22 KLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGAPKE 71
>pdb|1M1S|A Chain A, Structure Of Wr4, A C.Elegans Msp Family Member
Length = 116
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 27 GFCDLKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQRESPPDMQC 86
G + + ++ +AFKVK+++ + Y VRP G V + + + PP
Sbjct: 25 GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDIN---RLPGPPK--- 78
Query: 87 KDKFLLQSTIVPS 99
+DK ++Q VP+
Sbjct: 79 EDKIVIQYAEVPA 91
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 12 VHPEELKFIFELEKQGFCDLKV 33
VHPE LKFI LE GF D+K+
Sbjct: 162 VHPETLKFI--LEYLGFRDVKI 181
>pdb|2REU|A Chain A, Crystal Structure Of The C-Terminal Of Sau3ai Fragment
Length = 258
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 52 KYFVRPNTGVVQP----WDSCIIRVTLQAQRESPPDMQCKDKFLLQSTIVPSNTD-VDDL 106
K+F P + P WD + ++ E+ PD KD + +++ V + D + +
Sbjct: 141 KFFSMPEEDINGPVKRMWDDTVKKLKEGVTLEAVPDKSTKDGWRIKNNFVDKSDDLICHV 200
Query: 107 PPDTFNKD 114
P T N+D
Sbjct: 201 RPHTNNRD 208
>pdb|2BVU|A Chain A, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
pdb|2BVU|B Chain B, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
pdb|2BVU|C Chain C, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
pdb|2BVU|D Chain D, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
Length = 126
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 31 LKVINNTEHHVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVT 73
+K+ N + + +KTT+ ++ V P GV+ P + ++ V+
Sbjct: 31 IKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVS 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,265,035
Number of Sequences: 62578
Number of extensions: 208983
Number of successful extensions: 335
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 22
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)